F167223

General Info

Members Datasets Scaffolds Average Seq Length
136 93 272 457

Family's Representative Sequence

Representative Sequence 3300035090|Ga0373949_0000158|Ga0373949_0000158_10580_12073
Length 497
Sequence MSTRLTSLVLGGVLGLLAVPSCDLNVPDLNNPGLNELVDTPTPNKVNAAATGMLVGNRAGKSAPTGLVNQLGILGRESYDFDPNDGRFINELIRGTLQRGSPFGGVFWAGNYSNILNGNNIVHALDKLTVFDTAANVDAQKTAMKGFVHTIQGMEFEVIYLTHYDTGAPIDVDHPLGSPLGPFVSKDDVLKEANRLLDLGKTELLATTSTSFTFGLSLGYKNLDTPLTFLKFNRAMRAQTALYAKDYATVLKILNIVDPKSKDPDRSFIVDPAPGTTPALTAADLNVGAFHSYSTGAGDQVNGLFNRTSVLAHPSFETDAQKQADGSLDQRFQDKISIALDDMGKEAPTTSANDDSLSSALSFTIYNAADAPVPVIRNEELLLIKAEALWFTSDHAGAIDELNKVRTLSGKLPALTFDPAMTNDQFIDALLYERRYSLMYEGGHRWIDLRRFNRPLPLDDPKAHKKNFRYPVPQGECDARPGEAACTIKSTDPLPAN

Samples

Sample ID Description Type Environment
1 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
2 3300003575 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_25 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
21 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
25 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
26 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
27 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
28 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
31 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
32 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027378 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes) (version 2) Metagenome Rhizosphere
49 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
50 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
52 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
53 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
54 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
55 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
56 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
57 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
58 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
59 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
60 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
61 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
62 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
63 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
64 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
65 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
66 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
67 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
68 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
71 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
72 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
73 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
74 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
75 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
76 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
77 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
78 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
79 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
80 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
81 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
82 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
83 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
84 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
85 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
86 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
87 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
88 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
89 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
90 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
91 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
92 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
93 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.26
Metatranscriptomes 0.74
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.38
Nodule 0
Rhizoplane 0.74
Rhizosphere 74.26
Stem 0
Stem Tuber 0
Unclassified 16.91

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0373949_0000158 3300035090 Bacteria 25614
2 Ga0007409J51694_1057246 3300003575 Bacteria 2494
3 Ga0070690_100033204 3300005330 Unclassified 3229
4 Ga0068869_100025971 3300005334 Bacteria 4073
5 Ga0070680_100077534 3300005336 Bacteria 2737
6 Ga0068868_100011795 3300005338 Bacteria 6371
7 Ga0068868_100027749 3300005338 Bacteria 4320
8 Ga0070689_100060235 3300005340 Bacteria 2951
9 Ga0070691_10033868 3300005341 Unclassified 2404
10 Ga0070700_100010834 3300005441 Bacteria 5039
11 Ga0070708_100000035 3300005445 Bacteria 86305
12 Ga0070708_100068178 3300005445 Bacteria 3197
13 Ga0070663_100194792 3300005455 Bacteria 1579
14 Ga0070678_100006486 3300005456 Bacteria 6871
15 Ga0070662_100019655 3300005457 Unclassified 4588
16 Ga0068867_100014714 3300005459 Bacteria 5545
17 Ga0068867_100017134 3300005459 Bacteria 5147
18 Ga0070706_100015669 3300005467 Bacteria 7002
19 Ga0070706_100131421 3300005467 Bacteria 2336
20 Ga0070707_100001650 3300005468 Bacteria 21607
21 Ga0070707_100034068 3300005468 Bacteria 4857
22 Ga0070698_100008037 3300005471 Bacteria 11412
23 Ga0070698_100235630 3300005471 Unclassified 1763
24 Ga0070699_100005527 3300005518 Bacteria 11075
25 Ga0070699_100176773 3300005518 Bacteria 1893
26 Ga0070679_100017453 3300005530 Bacteria 6946
27 Ga0070679_100059552 3300005530 Bacteria 3806
28 Ga0070696_100000048 3300005546 Bacteria 55771
29 Ga0070696_100029541 3300005546 Bacteria 3747
30 Ga0068866_10090033 3300005718 Unclassified 1669
31 Ga0068863_100019333 3300005841 Bacteria 6514
32 Ga0068863_100027277 3300005841 Bacteria 5447
33 Ga0068860_100011558 3300005843 Bacteria 8702
34 Ga0068860_100038201 3300005843 Bacteria 4594
35 Ga0068860_100122046 3300005843 Bacteria 2496
36 Ga0070717_10039680 3300006028 Bacteria 3831
37 Ga0075430_100135707 3300006846 Bacteria 2050
38 Ga0075429_100085301 3300006880 Bacteria 2753
39 Ga0068865_100008623 3300006881 Bacteria 6305
40 Ga0068865_100021415 3300006881 Bacteria 4203
41 Ga0075435_100007263 3300007076 Bacteria 7885
42 Ga0111539_10028987 3300009094 Bacteria 6750
43 Ga0105245_10025101 3300009098 Bacteria 5241
44 Ga0105245_10054642 3300009098 Bacteria 3586
45 Ga0157378_10002775 3300013297 Bacteria 15609
46 Ga0157378_10016549 3300013297 Bacteria 6459
47 Ga0207645_10026244 3300025907 Unclassified 3765
48 Ga0207652_10127696 3300025921 Bacteria 2266
49 Ga0207646_10002111 3300025922 Bacteria 23813
50 Ga0207646_10008478 3300025922 Bacteria 10298
51 Ga0207687_10031965 3300025927 Unclassified 3561
52 Ga0207706_10019877 3300025933 Bacteria 6037
53 Ga0207670_10086140 3300025936 Bacteria 2209
54 Ga0207669_10021086 3300025937 Bacteria 3432
55 Ga0207704_10016778 3300025938 Unclassified 3774
56 Ga0207704_10038144 3300025938 Bacteria 2783
57 Ga0207689_10045151 3300025942 Bacteria 3644
58 Ga0207712_10147308 3300025961 Unclassified 1814
59 Ga0207677_10018580 3300026023 Bacteria 4175
60 Ga0207677_10024734 3300026023 Unclassified 3735
61 Ga0207678_10052361 3300026067 Bacteria 3522
62 Ga0207708_10041325 3300026075 Unclassified 3516
63 Ga0207641_10021052 3300026088 Bacteria 5360
64 Ga0207641_10120497 3300026088 Bacteria 2340
65 Ga0207648_10027989 3300026089 Bacteria 5001
66 Ga0207648_10139174 3300026089 Viruses 2139
67 Ga0207683_10012736 3300026121 Bacteria 7178
68 Ga0209981_1003219 3300027378 Unclassified 2115
69 Ga0207428_10042891 3300027907 Bacteria 3657
70 Ga0268264_10004998 3300028381 Bacteria 11222
71 Ga0307515_10026758 3300028794 Bacteria 9905
72 Ga0307513_10177612 3300031456 Bacteria 1997
73 Ga0307509_10000133 3300031507 Bacteria 110450
74 Ga0307509_10034216 3300031507 Bacteria 5583
75 Ga0307509_10061791 3300031507 Bacteria 3953
76 Ga0307508_10056934 3300031616 Bacteria 3460
77 Ga0307516_10014140 3300031730 Bacteria 8459
78 Ga0307516_10027852 3300031730 Bacteria 5726
79 Ga0307516_10090519 3300031730 Unclassified 2888
80 Ga0307413_10025377 3300031824 Bacteria 3248
81 Ga0307410_10007946 3300031852 Bacteria 5848
82 Ga0307410_10128281 3300031852 Bacteria 1860
83 Ga0307406_10014665 3300031901 Bacteria 4512
84 Ga0307409_100034523 3300031995 Bacteria 3695
85 Ga0307416_100082763 3300032002 Bacteria 2720
86 Ga0307416_100142702 3300032002 Unclassified 2180
87 Ga0307414_10106084 3300032004 Bacteria 2126
88 Ga0307415_100016271 3300032126 Unclassified 4430
89 Ga0307415_100088493 3300032126 Bacteria 2234
90 Ga0373940_0020306 3300035088 Bacteria 1687
91 Ga0373961_0000057 3300035241 Bacteria 65115
92 Ga0453683_0011773 3300044673 Bacteria 5760
93 Ga0495686_0007700 3300047472 Bacteria 8041
94 Ga0496112_0021841 3300048915 Bacteria 6090
95 Ga0501036_0224491 3300049572 Unclassified 1577
96 Ga0501042_0098968 3300049578 Unclassified 2097
97 Ga0501068_0128972 3300049584 Bacteria 1581
98 Ga0501072_0054203 3300049588 Bacteria 3159
99 Ga0501076_0127565 3300049592 Unclassified 2062
100 Ga0501079_0082922 3300049741 Bacteria 2480
101 Ga0501081_0021387 3300049743 Bacteria 4317
102 Ga0501081_0172675 3300049743 Unclassified 1561
103 Ga0501035_0000098 3300049822 Bacteria 109731
104 nmdc:mga09592_133050_c1 3300050508 Unclassified 2141
105 nmdc:mga09592_82762_c1 3300050508 Bacteria 2735
106 nmdc:mga08y16_64226_c1 3300050511 Bacteria 3834
107 nmdc:mga08y16_97511_c1 3300050511 Bacteria 3061
108 nmdc:mga0a205_10236_c1 3300050515 Bacteria 8615
109 nmdc:mga0a205_24178_c1 3300050515 Bacteria 5771
110 Ga0500635_0005533 3300053080 Bacteria 3320
111 Ga0500635_0007723 3300053080 Bacteria 2925
112 Ga0500578_0079345 3300053086 Bacteria 2089
113 Ga0500646_0004410 3300053090 Bacteria 3567
114 Ga0500566_0004776 3300053094 Bacteria 8075
115 Ga0500566_0007239 3300053094 Bacteria 6575
116 Ga0500566_0009202 3300053094 Bacteria 5840
117 Ga0500566_0013893 3300053094 Bacteria 4734
118 Ga0500640_001771 3300053095 Bacteria 6776
119 Ga0500640_008071 3300053095 Bacteria 4141
120 Ga0500554_000434 3300053102 Bacteria 8797
121 Ga0500554_000612 3300053102 Bacteria 7262
122 Ga0500554_017175 3300053102 Unclassified 1929
123 Ga0500572_000781 3300053111 Bacteria 10202
124 Ga0500572_001259 3300053111 Bacteria 7136
125 Ga0500595_000228 3300053119 Bacteria 37991
126 Ga0500595_000620 3300053119 Bacteria 21220
127 Ga0500597_034641 3300053120 Bacteria 2096
128 Ga0500614_000145 3300053123 Bacteria 17640
129 Ga0500614_000186 3300053123 Bacteria 16036
130 Ga0500614_001294 3300053123 Bacteria 6041
131 Ga0500642_0000930 3300053130 Bacteria 8495
132 Ga0500559_0021103 3300053136 Unclassified 2758
133 Ga0500568_0018805 3300053139 Bacteria 3014
134 Ga0500603_000893 3300053150 Bacteria 7084
135 Ga0501082_0135368 3300060353 Bacteria 2138
136 Ga0501082_0200341 3300060353 Unclassified 1737
137 Ga0373949_0000158
138 Ga0007409J51694_1057246
139 Ga0070690_100033204
140 Ga0068869_100025971
141 Ga0070680_100077534
142 Ga0068868_100011795
143 Ga0068868_100027749
144 Ga0070689_100060235
145 Ga0070691_10033868
146 Ga0070700_100010834
147 Ga0070708_100000035
148 Ga0070708_100068178
149 Ga0070663_100194792
150 Ga0070678_100006486
151 Ga0070662_100019655
152 Ga0068867_100014714
153 Ga0068867_100017134
154 Ga0070706_100015669
155 Ga0070706_100131421
156 Ga0070707_100001650
157 Ga0070707_100034068
158 Ga0070698_100008037
159 Ga0070698_100235630
160 Ga0070699_100005527
161 Ga0070699_100176773
162 Ga0070679_100017453
163 Ga0070679_100059552
164 Ga0070696_100000048
165 Ga0070696_100029541
166 Ga0068866_10090033
167 Ga0068863_100019333
168 Ga0068863_100027277
169 Ga0068860_100011558
170 Ga0068860_100038201
171 Ga0068860_100122046
172 Ga0070717_10039680
173 Ga0075430_100135707
174 Ga0075429_100085301
175 Ga0068865_100008623
176 Ga0068865_100021415
177 Ga0075435_100007263
178 Ga0111539_10028987
179 Ga0105245_10025101
180 Ga0105245_10054642
181 Ga0157378_10002775
182 Ga0157378_10016549
183 Ga0207645_10026244
184 Ga0207652_10127696
185 Ga0207646_10002111
186 Ga0207646_10008478
187 Ga0207687_10031965
188 Ga0207706_10019877
189 Ga0207670_10086140
190 Ga0207669_10021086
191 Ga0207704_10016778
192 Ga0207704_10038144
193 Ga0207689_10045151
194 Ga0207712_10147308
195 Ga0207677_10018580
196 Ga0207677_10024734
197 Ga0207678_10052361
198 Ga0207708_10041325
199 Ga0207641_10021052
200 Ga0207641_10120497
201 Ga0207648_10027989
202 Ga0207648_10139174
203 Ga0207683_10012736
204 Ga0209981_1003219
205 Ga0207428_10042891
206 Ga0268264_10004998
207 Ga0307515_10026758
208 Ga0307513_10177612
209 Ga0307509_10000133
210 Ga0307509_10034216
211 Ga0307509_10061791
212 Ga0307508_10056934
213 Ga0307516_10014140
214 Ga0307516_10027852
215 Ga0307516_10090519
216 Ga0307413_10025377
217 Ga0307410_10007946
218 Ga0307410_10128281
219 Ga0307406_10014665
220 Ga0307409_100034523
221 Ga0307416_100082763
222 Ga0307416_100142702
223 Ga0307414_10106084
224 Ga0307415_100016271
225 Ga0307415_100088493
226 Ga0373940_0020306
227 Ga0373961_0000057
228 Ga0453683_0011773
229 Ga0495686_0007700
230 Ga0496112_0021841
231 Ga0501036_0224491
232 Ga0501042_0098968
233 Ga0501068_0128972
234 Ga0501072_0054203
235 Ga0501076_0127565
236 Ga0501079_0082922
237 Ga0501081_0021387
238 Ga0501081_0172675
239 Ga0501035_0000098
240 nmdc:mga09592_133050_c1
241 nmdc:mga09592_82762_c1
242 nmdc:mga08y16_64226_c1
243 nmdc:mga08y16_97511_c1
244 nmdc:mga0a205_10236_c1
245 nmdc:mga0a205_24178_c1
246 Ga0500635_0005533
247 Ga0500635_0007723
248 Ga0500578_0079345
249 Ga0500646_0004410
250 Ga0500566_0004776
251 Ga0500566_0007239
252 Ga0500566_0009202
253 Ga0500566_0013893
254 Ga0500640_001771
255 Ga0500640_008071
256 Ga0500554_000434
257 Ga0500554_000612
258 Ga0500554_017175
259 Ga0500572_000781
260 Ga0500572_001259
261 Ga0500595_000228
262 Ga0500595_000620
263 Ga0500597_034641
264 Ga0500614_000145
265 Ga0500614_000186
266 Ga0500614_001294
267 Ga0500642_0000930
268 Ga0500559_0021103
269 Ga0500568_0018805
270 Ga0500603_000893
271 Ga0501082_0135368
272 Ga0501082_0200341

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07980

SusD_RagB

SusD family

358

484

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
3jq1-assembly2.cif.gz_B crystal structure of susd superfamily protein (yp_001297730.1) from bacteroides vulgatus atcc 8482 at 1.55 a resolution 0.7076 52 462
3i4g-assembly1.cif.gz_A crystal structure of a susd-like carbohydrate binding protein (bf0978) from bacteroides fragilis nctc 9343 at 1.35 a resolution 0.6969 41 462
3myv-assembly2.cif.gz_B crystal structure of a susd superfamily protein (bvu_0732) from bacteroides vulgatus atcc 8482 at 1.80 a resolution 0.6968 51 473
7kv1-assembly2.cif.gz_B surface glycan-binding protein a from bacteroides uniformis 0.6893 51 462
7kv3-assembly1.cif.gz_AAA surface glycan-binding protein a from bacteroides thetaiotaomicron in complex with laminarihexaose 0.6884 47 464
ID Description Score Start End Superfamily
af_Q91XW8_170_316_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7325 117 249 1.25.40.10
af_D4A615_3_281_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7308 106 249 1.25.40.10
af_Q7XRB1_93_233_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7122 138 416 1.25.40.10
3ck9B01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.6827 66 199 1.25.40.390
af_A0A0M3HEL6_779_862_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.672 362 414 1.25.40.10
ID Description Score Start End GO Terms
AF-A0A6N9A7T8-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9268 26 467 GO:0009279
AF-A0A7W1SLU1-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9259 46 463
AF-A0A7X4E1E2-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9236 25 469
AF-A0A7X4EHC7-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9188 27 473 GO:0009279
AF-A0A841H5M0-F1-model_v4 RagB/SusD domain-containing protein 0.9171 26 464 GO:0009279

Map