F165969

General Info

Members Datasets Scaffolds Average Seq Length
136 111 117 352

Family's Representative Sequence

Representative Sequence 3300005546|Ga0070696_100013613|Ga0070696_1000136133
Length 425
Sequence MGGCCVPTAVGTKRTDPADATRVSGEFGRHAHPAVRPGFKPGGGRQPFPGRFDSCYLPPSSRPRNVSPPATMTSPMAPLSPEPRLTSLSHGGGCGCKIAPGVLAELLKGSLPSRPYADLMVGTETSDDAAVYRLNESLAVVATTDFFMPIVDDPFDFGRIAATNALSDIYAMGGRPLLALAIVGMPINTLSQATIRDILRGGEAVCERAGIPLAGGHSIDSVEPIYGLAVTGVVDPKKLKRNSSARSGDVLILGKPLGIGIFSAAFKKGLLDDAGYRAMIEVATQLNLPGMELSSVAGVHAMTDVTGFGLLGHLLEMCRGSGLAAQITAADLPLLPGLRALAQSGIATGASVRNWQFYGEDVRLAPHLDAPLQAVLTDPQTSGGLLVACDPDESSAVQAIFARLGFAQAAVIGRMSEGAPQIWVE

Samples

Sample ID Description Type Environment
1 2501025501 Paraburkholderia silvatlantica PVA5 Isolate Unclassified
2 2501025502 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
3 2501025504 Paraburkholderia silvatlantica SRMrh-20 Isolate Unclassified
4 2510917013 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
5 2510917014 Paraburkholderia silvatlantica SRMrh-20 Isolate Unclassified
6 2510917015 Paraburkholderia silvatlantica PVA5 Isolate Unclassified
7 2513237082 Paraburkholderia mimosarum STM3621 Isolate Nodule
8 2513237083 Paraburkholderia mimosarum LMG 23256 Isolate Nodule
9 2515154189 Paraburkholderia nodosa DSM 21604 Isolate Unclassified
10 2547132103 Chromobacterium sp. C-61 Isolate Rhizosphere
11 2562617112 Burkholderia sp. BT03 Isolate Rhizosphere
12 2643221583 Caulobacter sp. Root655 Isolate Unclassified
13 2711768613 Burkholderia sp. BT03 Isolate Rhizosphere
14 2713897090 Paracoccus sphaerophysae HAMBI 3106 Isolate Nodule
15 2843690924 Chromobacterium rhizoryzae JP2-74 Isolate Rhizosphere
16 2857357740 Paraburkholderia tropica BE15 Isolate Rhizosphere
17 2883087390 Paraburkholderia guartelaensis CNPSo 3008 Isolate Unclassified
18 2941485952 Brevundimonas faecalis 2814 Isolate Rhizosphere
19 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
20 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
21 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
22 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
25 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
31 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
32 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
40 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
41 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
42 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
50 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
51 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
52 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
53 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
54 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
55 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
56 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
57 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
58 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
59 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
60 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
61 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
62 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
63 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
64 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
65 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
66 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
67 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
68 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
69 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
70 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
71 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
72 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
75 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
76 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
77 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
78 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
79 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
80 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
81 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
82 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
83 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
84 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
85 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
86 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
87 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
88 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
89 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
90 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
91 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
92 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
98 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
99 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
100 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
101 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
102 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
103 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
104 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
105 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
106 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
107 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
108 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
109 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
110 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
111 8003955200 Paraburkholderia mimosarum LMG 23256 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 86.03
Metatranscriptomes 0
Isolates 13.97

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.94
Nodule 2.94
Rhizoplane 8.82
Rhizosphere 77.21
Stem 0
Stem Tuber 0
Unclassified 8.09

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070660_100175030 3300005339 Bacteria 1735
2 Ga0070667_100000012 3300005367 Bacteria 258575
3 Ga0070713_100078427 3300005436 Bacteria 2811
4 Ga0070685_10114834 3300005466 Bacteria 1664
5 Ga0068853_100212949 3300005539 Bacteria 1762
6 Ga0070696_100013613 3300005546 Bacteria 5459
7 Ga0070704_100066593 3300005549 Bacteria 2598
8 Ga0068855_100596625 3300005563 Bacteria 1191
9 Ga0068859_100321278 3300005617 Bacteria 1642
10 Ga0068863_100383360 3300005841 Bacteria 1373
11 Ga0068858_100330945 3300005842 Bacteria 1457
12 Ga0070716_100113202 3300006173 Bacteria 1685
13 Ga0070712_100222159 3300006175 Bacteria 1496
14 Ga0075362_10037161 3300006177 Bacteria 2133
15 Ga0097620_100321271 3300006931 Bacteria 1642
16 Ga0105240_10142879 3300009093 Bacteria 2860
17 Ga0111539_10041046 3300009094 Bacteria 5565
18 Ga0105248_10024305 3300009177 Bacteria 6738
19 Ga0157370_10084858 3300013104 Bacteria 2976
20 Ga0163162_10008445 3300013306 Bacteria 10046
21 Ga0163162_10023624 3300013306 Bacteria 6070
22 Ga0157379_10008250 3300014968 Bacteria 9049
23 Ga0157376_10003417 3300014969 Bacteria 10928
24 Ga0213872_10000103 3300021361 Bacteria 78708
25 Ga0207660_10173057 3300025917 Bacteria 1672
26 Ga0207689_10380845 3300025942 Bacteria 1175
27 Ga0207667_10199172 3300025949 Bacteria 2055
28 Ga0207658_10000027 3300025986 Bacteria 174626
29 Ga0207703_10154154 3300026035 Bacteria 2006
30 Ga0207702_10308705 3300026078 Bacteria 1503
31 Ga0207698_10223395 3300026142 Bacteria 1704
32 Ga0265338_10000023 3300028800 Bacteria 300147
33 Ga0265338_10004783 3300028800 Bacteria 18097
34 Ga0265338_10016989 3300028800 Bacteria 7872
35 Ga0265338_10018352 3300028800 Bacteria 7494
36 Ga0265324_10000008 3300029957 Bacteria 259947
37 Ga0265324_10015621 3300029957 Bacteria 2789
38 Ga0307511_10068483 3300030521 Bacteria 2620
39 Ga0265328_10000752 3300031239 Bacteria 14981
40 Ga0265325_10000154 3300031241 Bacteria 48571
41 Ga0265331_10000030 3300031250 Bacteria 215032
42 Ga0265327_10000072 3300031251 Bacteria 215055
43 Ga0265327_10000166 3300031251 Bacteria 141539
44 Ga0265327_10000356 3300031251 Bacteria 87168
45 Ga0265327_10001660 3300031251 Bacteria 26802
46 Ga0307408_100008122 3300031548 Bacteria 6937
47 Ga0316575_10000015 3300031665 Bacteria 44411
48 Ga0265314_10023283 3300031711 Bacteria 4725
49 Ga0307406_10030610 3300031901 Bacteria 3270
50 Ga0307414_10236969 3300032004 Bacteria 1508
51 Ga0316583_10056878 3300032133 Bacteria 1374
52 Ga0373925_0054809 3300037068 Bacteria 2983
53 Ga0395900_0014019 3300037418 Bacteria 8185
54 Ga0395905_0020996 3300037471 Bacteria 6183
55 Ga0395905_0093972 3300037471 Bacteria 2813
56 Ga0395901_0056579 3300038443 Bacteria 4080
57 Ga0395901_0082632 3300038443 Bacteria 3356
58 Ga0436365_0720684 3300039437 Bacteria 2128
59 Ga0436360_0784353 3300039438 Bacteria 5148
60 Ga0436360_0895772 3300039438 Bacteria 4279
61 Ga0436360_1277984 3300039438 Bacteria 3803
62 Ga0436361_0246541 3300039447 Bacteria 7118
63 Ga0436361_0293914 3300039447 Bacteria 22531
64 Ga0436361_0694025 3300039447 Bacteria 1789
65 Ga0436361_1000114 3300039447 Bacteria 1791
66 Ga0439442_003909 3300042002 Bacteria 2954
67 Ga0466969_0042830 3300044656 Bacteria 2257
68 Ga0453683_0091150 3300044673 Bacteria 1911
69 Ga0466961_0008460 3300044693 Bacteria 6554
70 Ga0453684_0002303 3300044712 Bacteria 46928
71 Ga0466959_0002013 3300045049 Bacteria 12826
72 Ga0466959_0012883 3300045049 Bacteria 6053
73 Ga0451576_0002234 3300045051 Bacteria 29772
74 Ga0495628_0006558 3300046516 Bacteria 10155
75 Ga0495623_0030925 3300046679 Bacteria 3444
76 Ga0495613_0010383 3300046689 Bacteria 6916
77 Ga0495649_0000586 3300046694 Bacteria 30569
78 Ga0495686_0000029 3300047472 Bacteria 369110
79 Ga0495686_0100793 3300047472 Bacteria 1742
80 Ga0495593_0113137 3300047673 Bacteria 1385
81 Ga0496101_0325866 3300048904 Bacteria 1205
82 Ga0496104_0005744 3300048907 Bacteria 10858
83 Ga0496104_0072439 3300048907 Bacteria 3276
84 Ga0496105_0024604 3300048908 Bacteria 4893
85 Ga0496105_0030377 3300048908 Bacteria 4427
86 Ga0496106_0000010 3300048909 Bacteria 232347
87 Ga0496110_0048291 3300048913 Bacteria 3731
88 Ga0496112_0238453 3300048915 Bacteria 1772
89 Ga0496114_0017844 3300048917 Bacteria 5736
90 Ga0496114_0022640 3300048917 Bacteria 5122
91 Ga0496115_0001104 3300048918 Bacteria 19472
92 Ga0496115_0014591 3300048918 Bacteria 5949
93 Ga0496121_0034385 3300048924 Bacteria 4562
94 Ga0496124_0117364 3300048927 Bacteria 2132
95 Ga0501032_0002377 3300049569 Bacteria 14696
96 Ga0501037_0015964 3300049573 Bacteria 5528
97 Ga0501040_0196220 3300049576 Bacteria 1433
98 Ga0501043_0031275 3300049579 Bacteria 4185
99 Ga0501047_0003890 3300049581 Bacteria 14039
100 Ga0501067_0001126 3300049583 Bacteria 14472
101 Ga0501068_0020319 3300049584 Bacteria 3867
102 Ga0501073_0000010 3300049589 Bacteria 171144
103 Ga0501073_0002497 3300049589 Bacteria 13742
104 Ga0501077_0000611 3300049593 Bacteria 21707
105 Ga0501080_0007506 3300049742 Bacteria 9847
106 Ga0501080_0009021 3300049742 Bacteria 9077
107 Ga0501044_0007627 3300049823 Bacteria 11901
108 Ga0501044_0009341 3300049823 Bacteria 10696
109 Ga0501044_0446207 3300049823 Bacteria 1201
110 nmdc:mga03683_101454_c1 3300050489 Bacteria 1265
111 nmdc:mga08y16_30942_c1 3300050511 Bacteria 5628
112 nmdc:mga0n895_83840_c1 3300050512 Bacteria 3180
113 nmdc:mga0rr50_1019_c1 3300050513 Bacteria 15205
114 nmdc:mga08x19_1055_c1 3300050514 Bacteria 17218
115 nmdc:mga0a205_3779_c1 3300050515 Bacteria 13551
116 Ga0500643_001164 3300053087 Bacteria 15686
117 Ga0500597_000333 3300053120 Bacteria 9746

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2547132103 2547376011 329
2 iso_pu_bacteria 2843690924 2843693542 329
3 iso_pu_bacteria 2643221583 2643926647 330
4 3300013104 Ga0157370_10084858 Ga0157370_100848583 331
5 3300025917 Ga0207660_10173057 Ga0207660_101730572 331
6 3300046694 Ga0495649_0000586 Ga0495649_0000586_6541_7575 331
7 3300048904 Ga0496101_0325866 Ga0496101_0325866_13_1047 331
8 iso_pu_bacteria 2713897090 2715498828 331
9 iso_pu_bacteria 2941485952 2941489228 331
10 3300009177 Ga0105248_10024305 Ga0105248_100243054 332
11 3300013306 Ga0163162_10008445 Ga0163162_100084459 332
12 3300014968 Ga0157379_10008250 Ga0157379_100082508 332
13 3300014969 Ga0157376_10003417 Ga0157376_100034174 332
14 3300048907 Ga0496104_0005744 Ga0496104_0005744_4885_5922 332
15 3300048908 Ga0496105_0024604 Ga0496105_0024604_1712_2749 332
16 3300048913 Ga0496110_0048291 Ga0496110_0048291_765_1802 332
17 3300048917 Ga0496114_0022640 Ga0496114_0022640_3460_4497 332
18 3300048918 Ga0496115_0014591 Ga0496115_0014591_2919_3956 332
19 3300005466 Ga0070685_10114834 Ga0070685_101148342 333
20 3300021361 Ga0213872_10000103 Ga0213872_1000010336 333
21 3300031239 Ga0265328_10000752 Ga0265328_100007526 333
22 3300031250 Ga0265331_10000030 Ga0265331_1000003097 333
23 3300031251 Ga0265327_10000072 Ga0265327_1000007298 333
24 3300039447 Ga0436361_0293914 Ga0436361_0293914_13114_14154 333
25 3300047472 Ga0495686_0100793 Ga0495686_0100793_337_1377 333
26 3300006177 Ga0075362_10037161 Ga0075362_100371612 334
27 3300026078 Ga0207702_10308705 Ga0207702_103087052 334
28 3300029957 Ga0265324_10000008 Ga0265324_1000000846 334
29 3300029957 Ga0265324_10015621 Ga0265324_100156213 334
30 3300031241 Ga0265325_10000154 Ga0265325_1000015413 334
31 3300031251 Ga0265327_10000166 Ga0265327_1000016631 334
32 3300031251 Ga0265327_10000356 Ga0265327_1000035643 334
33 3300031711 Ga0265314_10023283 Ga0265314_100232832 334
34 3300032004 Ga0307414_10236969 Ga0307414_102369691 334
35 3300039438 Ga0436360_1277984 Ga0436360_1277984_1213_2271 334
36 3300039447 Ga0436361_0246541 Ga0436361_0246541_5685_6734 334
37 3300044712 Ga0453684_0002303 Ga0453684_0002303_38965_40011 334
38 3300045049 Ga0466959_0012883 Ga0466959_0012883_4990_6033 334
39 3300045051 Ga0451576_0002234 Ga0451576_0002234_27540_28586 334
40 3300049569 Ga0501032_0002377 Ga0501032_0002377_9114_10157 334
41 3300049573 Ga0501037_0015964 Ga0501037_0015964_1053_2096 334
42 3300049576 Ga0501040_0196220 Ga0501040_0196220_27_1073 334
43 3300049579 Ga0501043_0031275 Ga0501043_0031275_1095_2138 334
44 3300049581 Ga0501047_0003890 Ga0501047_0003890_2713_3759 334
45 3300049583 Ga0501067_0001126 Ga0501067_0001126_9779_10822 334
46 3300049584 Ga0501068_0020319 Ga0501068_0020319_2402_3445 334
47 3300049589 Ga0501073_0000010 Ga0501073_0000010_20211_21254 334
48 3300049589 Ga0501073_0002497 Ga0501073_0002497_4315_5361 334
49 3300049593 Ga0501077_0000611 Ga0501077_0000611_2218_3261 334
50 3300049742 Ga0501080_0007506 Ga0501080_0007506_7420_8463 334
51 3300049742 Ga0501080_0009021 Ga0501080_0009021_6787_7833 334
52 3300049823 Ga0501044_0007627 Ga0501044_0007627_3185_4228 334
53 3300049823 Ga0501044_0009341 Ga0501044_0009341_7377_8426 334
54 3300049823 Ga0501044_0446207 Ga0501044_0446207_107_1153 334
55 3300050489 nmdc:mga03683_101454_c1 nmdc:mga03683_101454_c1_82_1137 334
56 3300031251 Ga0265327_10001660 Ga0265327_100016607 335
57 3300046679 Ga0495623_0030925 Ga0495623_0030925_2139_3185 335
58 3300047673 Ga0495593_0113137 Ga0495593_0113137_305_1351 335
59 3300005549 Ga0070704_100066593 Ga0070704_1000665931 336
60 iso_pu_bacteria 2562617112 2563061180 336
61 iso_pu_bacteria 2711768613 2713476140 336
62 3300026142 Ga0207698_10223395 Ga0207698_102233952 337
63 3300039447 Ga0436361_1000114 Ga0436361_1000114_368_1423 337
64 iso_pu_bacteria 2501025501 2501073246 337
65 iso_pu_bacteria 2501025502 2501083777 337
66 iso_pu_bacteria 2501025504 2501413150 337
67 iso_pu_bacteria 2510917013 2511087395 337
68 iso_pu_bacteria 2510917014 2511100408 337
69 iso_pu_bacteria 2510917015 2511105928 337
70 iso_pu_bacteria 2513237082 2513551830 337
71 iso_pu_bacteria 2513237083 2513561966 337
72 iso_pu_bacteria 2515154189 2516017729 337
73 iso_pu_bacteria 2883087390 2883092628 337
74 iso_pu_bacteria 8003955200 8003956997 337
75 3300005367 Ga0070667_100000012 Ga0070667_100000012129 338
76 3300025986 Ga0207658_10000027 Ga0207658_10000027122 338
77 3300031548 Ga0307408_100008122 Ga0307408_1000081222 338
78 3300031665 Ga0316575_10000015 Ga0316575_100000153 338
79 3300031901 Ga0307406_10030610 Ga0307406_100306103 338
80 3300032133 Ga0316583_10056878 Ga0316583_100568782 338
81 3300042002 Ga0439442_003909 Ga0439442_003909_1587_2657 338
82 3300053087 Ga0500643_001164 Ga0500643_001164_7766_8821 338
83 3300053120 Ga0500597_000333 Ga0500597_000333_1148_2203 338
84 3300028800 Ga0265338_10004783 Ga0265338_1000478316 339
85 3300028800 Ga0265338_10018352 Ga0265338_100183524 339
86 3300044673 Ga0453683_0091150 Ga0453683_0091150_266_1324 339
87 3300048915 Ga0496112_0238453 Ga0496112_0238453_668_1732 339
88 iso_pu_bacteria 2857357740 2857364892 339
89 3300005539 Ga0068853_100212949 Ga0068853_1002129492 340
90 3300005563 Ga0068855_100596625 Ga0068855_1005966251 340
91 3300005617 Ga0068859_100321278 Ga0068859_1003212782 340
92 3300005842 Ga0068858_100330945 Ga0068858_1003309452 340
93 3300006931 Ga0097620_100321271 Ga0097620_1003212712 340
94 3300009093 Ga0105240_10142879 Ga0105240_101428792 340
95 3300009094 Ga0111539_10041046 Ga0111539_100410465 340
96 3300025942 Ga0207689_10380845 Ga0207689_103808451 340
97 3300025949 Ga0207667_10199172 Ga0207667_101991722 340
98 3300026035 Ga0207703_10154154 Ga0207703_101541542 340
99 3300028800 Ga0265338_10016989 Ga0265338_100169894 340
100 3300030521 Ga0307511_10068483 Ga0307511_100684832 340
101 3300037418 Ga0395900_0014019 Ga0395900_0014019_4580_5647 340
102 3300037471 Ga0395905_0020996 Ga0395905_0020996_2961_4031 340
103 3300037471 Ga0395905_0093972 Ga0395905_0093972_247_1323 340
104 3300038443 Ga0395901_0056579 Ga0395901_0056579_519_1586 340
105 3300038443 Ga0395901_0082632 Ga0395901_0082632_220_1296 340
106 3300046689 Ga0495613_0010383 Ga0495613_0010383_5535_6599 340
107 3300050511 nmdc:mga08y16_30942_c1 nmdc:mga08y16_30942_c1_3986_5059 340
108 3300050512 nmdc:mga0n895_83840_c1 nmdc:mga0n895_83840_c1_555_1628 340
109 3300050513 nmdc:mga0rr50_1019_c1 nmdc:mga0rr50_1019_c1_6679_7752 340
110 3300050514 nmdc:mga08x19_1055_c1 nmdc:mga08x19_1055_c1_12313_13386 340
111 3300050515 nmdc:mga0a205_3779_c1 nmdc:mga0a205_3779_c1_7024_8097 340
112 3300006173 Ga0070716_100113202 Ga0070716_1001132022 341
113 3300006175 Ga0070712_100222159 Ga0070712_1002221591 341
114 3300013306 Ga0163162_10023624 Ga0163162_100236244 341
115 3300028800 Ga0265338_10000023 Ga0265338_10000023162 341
116 3300037068 Ga0373925_0054809 Ga0373925_0054809_1191_2255 341
117 3300039437 Ga0436365_0720684 Ga0436365_0720684_582_1649 341
118 3300039447 Ga0436361_0694025 Ga0436361_0694025_397_1464 341
119 3300044656 Ga0466969_0042830 Ga0466969_0042830_1170_2234 341
120 3300044693 Ga0466961_0008460 Ga0466961_0008460_4095_5159 341
121 3300045049 Ga0466959_0002013 Ga0466959_0002013_4957_6021 341
122 3300046516 Ga0495628_0006558 Ga0495628_0006558_5201_6265 341
123 3300047472 Ga0495686_0000029 Ga0495686_0000029_118328_119392 341
124 3300048907 Ga0496104_0072439 Ga0496104_0072439_500_1564 341
125 3300048908 Ga0496105_0030377 Ga0496105_0030377_57_1121 341
126 3300048909 Ga0496106_0000010 Ga0496106_0000010_27928_28992 341
127 3300048917 Ga0496114_0017844 Ga0496114_0017844_1226_2290 341
128 3300048918 Ga0496115_0001104 Ga0496115_0001104_2989_4053 341
129 3300048924 Ga0496121_0034385 Ga0496121_0034385_1180_2244 341
130 3300048927 Ga0496124_0117364 Ga0496124_0117364_919_1983 341
131 3300039438 Ga0436360_0784353 Ga0436360_0784353_282_1364 344
132 3300039438 Ga0436360_0895772 Ga0436360_0895772_3143_4225 344
133 3300005436 Ga0070713_100078427 Ga0070713_1000784272 345
134 3300005339 Ga0070660_100175030 Ga0070660_1001750301 348
135 3300005546 Ga0070696_100013613 Ga0070696_1000136133 348
136 3300005841 Ga0068863_100383360 Ga0068863_1003833601 348

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00586

AIRS

AIR synthase related protein, N-terminal domain

126

234

0.95

PF02769

AIRS_C

AIR synthase related protein, C-terminal domain

246

424

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
2yye-assembly1.cif.gz_A crystal structure of selenophosphate synthetase from aquifex aeolicus complexed with ampcpp 0.8942 17 348
2yye-assembly1.cif.gz_B crystal structure of selenophosphate synthetase from aquifex aeolicus complexed with ampcpp 0.8939 20 348
2zod-assembly1.cif.gz_B crystal structure of selenophosphate synthetase from aquifex aeolicus 0.8912 21 348
2zau-assembly1.cif.gz_B-2 crystal structure of an n-terminally truncated selenophosphate synthetase from aquifex aeolicus 0.8874 64 348
2zod-assembly1.cif.gz_B crystal structure of selenophosphate synthetase from aquifex aeolicus 0.8859 21 348
ID Description Score Start End Superfamily
af_Q7XTY9_163_289_2.60.40.200 Mainly Beta;Sandwich;Immunoglobulin-like;Superoxide dismutase, copper/zinc binding domain 0.9383 65 80 2.60.40.200
2yyeA01 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;PurM-like, N-terminal domain 0.9044 17 170 3.30.1330.10
2zauB01 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;PurM-like, N-terminal domain 0.8917 64 175 3.30.1330.10
2zodA01 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;PurM-like, N-terminal domain 0.8893 21 170 3.30.1330.10
af_Q4CNK4_62_184_3.30.1330.10 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;PurM-like, N-terminal domain 0.8857 64 175 3.30.1330.10
ID Description Score Start End GO Terms
AF-A0A529IV71-F1-model_v4 deleted 0.9767 51 348
AF-A0A1J5PP33-F1-model_v4 Selenide, water dikinase (EC 2.7.9.3) 0.9746 188 348 GO:0004756
GO:0005524
GO:0005737
GO:0016260
AF-A0A259PD58-F1-model_v4 Selenide, water dikinase SelD 0.9744 76 348 GO:0004756
GO:0005524
GO:0005737
GO:0016260
AF-T1C2V3-F1-model_v4 Selenide, water dikinase (EC 2.7.9.3) 0.974 67 258 GO:0004756
GO:0005524
GO:0005737
GO:0016260
AF-A0A536AYF9-F1-model_v4 Selenide, water dikinase SelD (EC 2.7.9.3) 0.9733 68 222 GO:0004756
GO:0005524
GO:0005737
GO:0016260

Feature Viewer

pLDDT pTM Quality
86.09 0.86 High
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Predicted Structure (AlphaFold2)

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