F163568

General Info

Members Datasets Scaffolds Average Seq Length
135 70 135 319

Family's Representative Sequence

Representative Sequence 3300026116|Ga0207674_10317351|Ga0207674_103173511
Length 374
Sequence MLLDLSSIQLAHSRIRKTLHRTPVLTSARLNETRGAQLYFKCENFQKTGAFKARGATNAVLSLSDAEAEHGVATHSSGNHAAAVARAANLRGIPAYVVMPLGSSAVKIRAVKGYGAKVTFCENTHAAREETCRRVMRETGAALIHPFTDPRVMAGQGTAALELLEEIPDLDVILCPVGGGGLLCGTAIAAKALRPSIRVIAAEPVGADDAARSFAAGHRVTIDHPATIADGLRANIGEPNFEIIRAKVDEIVTVSEESIVTAMRTIWETLKIVVEPSAAVPYAALLENKISLLPATRVGLILTGATFADHMRDLASGSRRITTFGACLLRLGVLPVLMLTFARWLPCPIELRRVMIIQAAIILVAVLIQRQKRS

Samples

Sample ID Description Type Environment
1 2162886006 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v1 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
15 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
16 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
17 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
18 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
19 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
26 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
27 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
35 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
36 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
39 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
40 3300031018 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
41 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
42 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
43 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
44 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
45 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
46 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
47 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
48 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
49 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
50 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
51 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
52 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
53 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
54 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
55 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
57 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
58 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
59 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
60 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
61 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
62 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
63 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
64 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
65 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
66 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
67 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
68 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
69 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
70 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.78
Metatranscriptomes 2.22
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.89
Nodule 0
Rhizoplane 0
Rhizosphere 89.63
Stem 0
Stem Tuber 0
Unclassified 1.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL3b_contig_1349527 2162886006 Unclassified 4898
2 SwRhRL3b_contig_1534003 2162886006 Unclassified 3167
3 SwRhRL3b_contig_3653115 2162886006 Unclassified 3009
4 SwRhRL2b_contig_351850 2162886007 Bacteria 12835
5 JGI25406J46586_10006157 3300003203 Bacteria 5540
6 Ga0065704_10000291 3300005289 Bacteria 52676
7 Ga0065704_10172528 3300005289 Bacteria 1271
8 Ga0065707_10000435 3300005295 Bacteria 91033
9 Ga0065707_10084829 3300005295 Bacteria 6730
10 Ga0065707_10093073 3300005295 Bacteria 3679
11 Ga0065707_10105885 3300005295 Bacteria 2624
12 Ga0068868_100220981 3300005338 Bacteria 1586
13 Ga0070708_100033879 3300005445 Bacteria 4439
14 Ga0070706_100040439 3300005467 Bacteria 4304
15 Ga0070707_100015479 3300005468 Bacteria 7157
16 Ga0070698_100025297 3300005471 Bacteria 6186
17 Ga0070698_100025425 3300005471 Bacteria 6172
18 Ga0070698_100049358 3300005471 Bacteria 4295
19 Ga0070698_100054637 3300005471 Bacteria 4053
20 Ga0070699_100025001 3300005518 Bacteria 5149
21 Ga0070665_100001514 3300005548 Bacteria 26960
22 Ga0070665_100004333 3300005548 Bacteria 14924
23 Ga0068859_100126956 3300005617 Bacteria 2620
24 Ga0081539_10000046 3300005985 Bacteria 275677
25 Ga0081539_10047027 3300005985 Unclassified 2468
26 Ga0097621_100152660 3300006237 Unclassified 1981
27 Ga0075428_100074161 3300006844 Bacteria 3717
28 Ga0075428_100440616 3300006844 Unclassified 1395
29 Ga0075430_100125003 3300006846 Bacteria 2144
30 Ga0075431_100021665 3300006847 Bacteria 6572
31 Ga0075431_100097854 3300006847 Bacteria 3029
32 Ga0075433_10392315 3300006852 Bacteria 1225
33 Ga0075429_100001436 3300006880 Bacteria 19551
34 Ga0075429_100061939 3300006880 Bacteria 3260
35 Ga0075429_100123481 3300006880 Bacteria 2264
36 Ga0075429_100162820 3300006880 Bacteria 1954
37 Ga0097620_100126953 3300006931 Bacteria 2620
38 Ga0105240_10066361 3300009093 Unclassified 4477
39 Ga0111539_10009831 3300009094 Bacteria 12072
40 Ga0111539_10018285 3300009094 Bacteria 8681
41 Ga0111539_10036676 3300009094 Bacteria 5925
42 Ga0114129_10021346 3300009147 Bacteria 9193
43 Ga0114129_10029227 3300009147 Bacteria 7806
44 Ga0114129_10090001 3300009147 Bacteria 4254
45 Ga0105243_10004951 3300009148 Bacteria 10437
46 Ga0105249_10020645 3300009553 Bacteria 5889
47 Ga0105249_10268865 3300009553 Unclassified 1698
48 Ga0105249_10310270 3300009553 Bacteria 1586
49 Ga0207684_10039483 3300025910 Bacteria 4004
50 Ga0207684_10070249 3300025910 Unclassified 2976
51 Ga0207695_10245065 3300025913 Unclassified 1692
52 Ga0207662_10076281 3300025918 Bacteria 2037
53 Ga0207646_10018446 3300025922 Bacteria 6508
54 Ga0207709_10088323 3300025935 Bacteria 2018
55 Ga0207712_10010695 3300025961 Bacteria 5828
56 Ga0207674_10317351 3300026116 Unclassified 1508
57 Ga0207428_10045909 3300027907 Bacteria 3515
58 Ga0207428_10205413 3300027907 Bacteria 1481
59 Ga0265354_1000471 3300028016 Bacteria 6987
60 Ga0268266_10002116 3300028379 Bacteria 21916
61 Ga0268266_10030281 3300028379 Bacteria 4599
62 Ga0268265_10291229 3300028380 Bacteria 1466
63 Ga0307515_10026914 3300028794 Bacteria 9863
64 Ga0265770_1000443 3300030878 Bacteria 5671
65 Ga0265773_1000439 3300031018 Bacteria 1674
66 Ga0265760_10000139 3300031090 Bacteria 18327
67 Ga0265328_10034593 3300031239 Bacteria 1871
68 Ga0265320_10043280 3300031240 Bacteria 2227
69 Ga0265327_10008139 3300031251 Bacteria 7888
70 Ga0265327_10030092 3300031251 Bacteria 3075
71 Ga0265327_10053582 3300031251 Bacteria 2092
72 Ga0265313_10002045 3300031595 Bacteria 18093
73 Ga0316579_10110100 3300031691 Bacteria 1322
74 Ga0307416_100167441 3300032002 Bacteria 2041
75 Ga0307411_10038767 3300032005 Bacteria 3009
76 Ga0451577_0002343 3300042876 Bacteria 22808
77 Ga0451577_0063003 3300042876 Bacteria 3306
78 Ga0451577_0089349 3300042876 Unclassified 2749
79 Ga0451577_0122317 3300042876 Unclassified 2331
80 Ga0453683_0015178 3300044673 Bacteria 4997
81 Ga0453683_0017848 3300044673 Bacteria 4561
82 Ga0453683_0150754 3300044673 Bacteria 1469
83 Ga0453683_0228638 3300044673 Unclassified 1184
84 Ga0453684_0000044 3300044712 Bacteria 585643
85 Ga0453684_0000802 3300044712 Bacteria 107142
86 Ga0453684_0003756 3300044712 Bacteria 33560
87 Ga0453684_0005577 3300044712 Bacteria 24799
88 Ga0453684_0009536 3300044712 Bacteria 16954
89 Ga0453684_0037255 3300044712 Bacteria 6678
90 Ga0453684_0078843 3300044712 Unclassified 4119
91 Ga0453684_0085910 3300044712 Bacteria 3907
92 Ga0453684_0103409 3300044712 Bacteria 3480
93 Ga0453684_0161474 3300044712 Unclassified 2650
94 Ga0453684_0305866 3300044712 Bacteria 1806
95 Ga0453684_0334685 3300044712 Unclassified 1711
96 Ga0453684_0336322 3300044712 Bacteria 1706
97 Ga0453684_0436065 3300044712 Bacteria 1461
98 Ga0453684_0539951 3300044712 Bacteria 1286
99 Ga0466959_0011471 3300045049 Bacteria 6370
100 Ga0451576_0001278 3300045051 Bacteria 43871
101 Ga0451576_0043953 3300045051 Unclassified 4711
102 Ga0451576_0281623 3300045051 Bacteria 1738
103 Ga0451576_0690451 3300045051 Bacteria 1072
104 Ga0496126_0009874 3300048929 Bacteria 10095
105 Ga0501046_0056645 3300049580 Bacteria 3076
106 Ga0501070_0004468 3300049586 Bacteria 12013
107 Ga0501074_0230722 3300049590 Bacteria 1318
108 nmdc:mga05p37_136462_c1 3300050507 Unclassified 3008
109 nmdc:mga05p37_15741_c1 3300050507 Bacteria 9095
110 nmdc:mga05p37_22701_c1 3300050507 Bacteria 7611
111 nmdc:mga05p37_32407_c1 3300050507 Bacteria 6389
112 nmdc:mga09592_177191_c1 3300050508 Bacteria 1844
113 nmdc:mga09592_33278_c1 3300050508 Bacteria 4302
114 nmdc:mga09592_70523_c1 3300050508 Bacteria 2965
115 nmdc:mga0qj67_11042_c1 3300050509 Bacteria 6762
116 nmdc:mga0qj67_115113_c1 3300050509 Bacteria 2172
117 nmdc:mga06r32_1374_c1 3300050510 Bacteria 21995
118 nmdc:mga06r32_2540_c1 3300050510 Bacteria 16323
119 nmdc:mga06r32_42001_c1 3300050510 Bacteria 4346
120 nmdc:mga08y16_1981_c1 3300050511 Bacteria 20891
121 nmdc:mga08y16_220739_c1 3300050511 Bacteria 1962
122 nmdc:mga08y16_7955_c1 3300050511 Bacteria 11091
123 Ga0500610_0122122 3300053079 Bacteria 1331
124 Ga0500583_0001547 3300053092 Bacteria 6643
125 Ga0500583_0027231 3300053092 Bacteria 2466
126 Ga0500642_0024976 3300053130 Bacteria 2422
127 Ga0500568_0005368 3300053139 Bacteria 6638
128 Ga0500568_0011872 3300053139 Bacteria 4023
129 Ga0500568_0040625 3300053139 Bacteria 1872
130 Ga0500588_0046962 3300053146 Unclassified 1329
131 Ga0500616_0000063 3300053153 Bacteria 243457
132 Ga0500616_0005870 3300053153 Bacteria 8220
133 Ga0500622_0002151 3300053156 Bacteria 14613
134 Ga0500622_0009642 3300053156 Bacteria 5336
135 Ga0501082_0137614 3300060353 Bacteria 2119

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049586 Ga0501070_0004468 Ga0501070_0004468_450_1409 305
2 3300003203 JGI25406J46586_10006157 JGI25406J46586_100061574 313
3 3300005295 Ga0065707_10093073 Ga0065707_100930734 313
4 3300005985 Ga0081539_10000046 Ga0081539_10000046208 313
5 3300006844 Ga0075428_100440616 Ga0075428_1004406162 313
6 3300009553 Ga0105249_10020645 Ga0105249_100206454 313
7 3300025961 Ga0207712_10010695 Ga0207712_100106956 313
8 3300031691 Ga0316579_10110100 Ga0316579_101101002 313
9 3300042876 Ga0451577_0002343 Ga0451577_0002343_10357_11298 313
10 3300042876 Ga0451577_0063003 Ga0451577_0063003_178_1119 313
11 3300042876 Ga0451577_0089349 Ga0451577_0089349_370_1311 313
12 3300044673 Ga0453683_0150754 Ga0453683_0150754_154_1098 313
13 3300044673 Ga0453683_0228638 Ga0453683_0228638_192_1133 313
14 3300044712 Ga0453684_0000802 Ga0453684_0000802_38614_39555 313
15 3300044712 Ga0453684_0003756 Ga0453684_0003756_31960_32904 313
16 3300044712 Ga0453684_0005577 Ga0453684_0005577_14341_15282 313
17 3300044712 Ga0453684_0009536 Ga0453684_0009536_4035_4991 313
18 3300044712 Ga0453684_0103409 Ga0453684_0103409_1599_2540 313
19 3300044712 Ga0453684_0305866 Ga0453684_0305866_430_1371 313
20 3300044712 Ga0453684_0334685 Ga0453684_0334685_710_1696 313
21 3300045051 Ga0451576_0001278 Ga0451576_0001278_11608_12552 313
22 3300045051 Ga0451576_0281623 Ga0451576_0281623_540_1496 313
23 3300053130 Ga0500642_0024976 Ga0500642_0024976_1246_2208 313
24 3300053146 Ga0500588_0046962 Ga0500588_0046962_90_1052 313
25 3300053156 Ga0500622_0002151 Ga0500622_0002151_5838_6779 313
26 3300005295 Ga0065707_10084829 Ga0065707_100848293 314
27 3300005338 Ga0068868_100220981 Ga0068868_1002209812 314
28 3300005471 Ga0070698_100025297 Ga0070698_1000252974 314
29 3300005548 Ga0070665_100004333 Ga0070665_10000433310 314
30 3300005617 Ga0068859_100126956 Ga0068859_1001269564 314
31 3300006844 Ga0075428_100074161 Ga0075428_1000741613 314
32 3300006846 Ga0075430_100125003 Ga0075430_1001250033 314
33 3300006847 Ga0075431_100021665 Ga0075431_1000216654 314
34 3300006880 Ga0075429_100001436 Ga0075429_10000143613 314
35 3300006880 Ga0075429_100162820 Ga0075429_1001628202 314
36 3300006931 Ga0097620_100126953 Ga0097620_1001269532 314
37 3300009094 Ga0111539_10009831 Ga0111539_100098317 314
38 3300009094 Ga0111539_10018285 Ga0111539_100182858 314
39 3300009147 Ga0114129_10021346 Ga0114129_100213463 314
40 3300009147 Ga0114129_10029227 Ga0114129_100292277 314
41 3300009553 Ga0105249_10268865 Ga0105249_102688652 314
42 3300009553 Ga0105249_10310270 Ga0105249_103102702 314
43 3300027907 Ga0207428_10045909 Ga0207428_100459093 314
44 3300027907 Ga0207428_10205413 Ga0207428_102054132 314
45 3300028016 Ga0265354_1000471 Ga0265354_10004713 314
46 3300028379 Ga0268266_10030281 Ga0268266_100302812 314
47 3300028380 Ga0268265_10291229 Ga0268265_102912291 314
48 3300030878 Ga0265770_1000443 Ga0265770_10004435 314
49 3300031018 Ga0265773_1000439 Ga0265773_10004392 314
50 3300031090 Ga0265760_10000139 Ga0265760_100001392 314
51 3300031240 Ga0265320_10043280 Ga0265320_100432802 314
52 3300044712 Ga0453684_0539951 Ga0453684_0539951_235_1182 314
53 3300050507 nmdc:mga05p37_15741_c1 nmdc:mga05p37_15741_c1_6906_7850 314
54 3300050507 nmdc:mga05p37_22701_c1 nmdc:mga05p37_22701_c1_719_1684 314
55 3300050508 nmdc:mga09592_177191_c1 nmdc:mga09592_177191_c1_553_1497 314
56 3300050508 nmdc:mga09592_33278_c1 nmdc:mga09592_33278_c1_556_1521 314
57 3300050509 nmdc:mga0qj67_115113_c1 nmdc:mga0qj67_115113_c1_394_1365 314
58 3300050510 nmdc:mga06r32_1374_c1 nmdc:mga06r32_1374_c1_11552_12517 314
59 3300050511 nmdc:mga08y16_1981_c1 nmdc:mga08y16_1981_c1_4543_5508 314
60 3300050511 nmdc:mga08y16_7955_c1 nmdc:mga08y16_7955_c1_9174_10139 314
61 3300053092 Ga0500583_0027231 Ga0500583_0027231_1085_2041 314
62 3300053139 Ga0500568_0040625 Ga0500568_0040625_560_1516 314
63 3300053153 Ga0500616_0000063 Ga0500616_0000063_38414_39370 314
64 3300053153 Ga0500616_0005870 Ga0500616_0005870_6193_7146 314
65 2162886006 SwRhRL3b_contig_1349527 SwRhRL3b_0628.00000820 315
66 2162886006 SwRhRL3b_contig_1534003 SwRhRL3b_0965.00000220 315
67 2162886006 SwRhRL3b_contig_3653115 SwRhRL3b_0609.00000080 315
68 2162886007 SwRhRL2b_contig_351850 SwRhRL2b_0567.00006800 315
69 3300005289 Ga0065704_10000291 Ga0065704_1000029116 315
70 3300005289 Ga0065704_10172528 Ga0065704_101725282 315
71 3300005295 Ga0065707_10000435 Ga0065707_1000043545 315
72 3300005295 Ga0065707_10105885 Ga0065707_101058852 315
73 3300005445 Ga0070708_100033879 Ga0070708_1000338794 315
74 3300005467 Ga0070706_100040439 Ga0070706_1000404391 315
75 3300005468 Ga0070707_100015479 Ga0070707_1000154794 315
76 3300005471 Ga0070698_100025425 Ga0070698_1000254258 315
77 3300005471 Ga0070698_100049358 Ga0070698_1000493585 315
78 3300005471 Ga0070698_100054637 Ga0070698_1000546373 315
79 3300005518 Ga0070699_100025001 Ga0070699_1000250012 315
80 3300005548 Ga0070665_100001514 Ga0070665_1000015147 315
81 3300005985 Ga0081539_10047027 Ga0081539_100470272 315
82 3300006237 Ga0097621_100152660 Ga0097621_1001526602 315
83 3300006847 Ga0075431_100097854 Ga0075431_1000978543 315
84 3300006852 Ga0075433_10392315 Ga0075433_103923152 315
85 3300006880 Ga0075429_100061939 Ga0075429_1000619393 315
86 3300006880 Ga0075429_100123481 Ga0075429_1001234811 315
87 3300009093 Ga0105240_10066361 Ga0105240_100663614 315
88 3300009094 Ga0111539_10036676 Ga0111539_100366763 315
89 3300009147 Ga0114129_10090001 Ga0114129_100900012 315
90 3300009148 Ga0105243_10004951 Ga0105243_100049519 315
91 3300025910 Ga0207684_10039483 Ga0207684_100394832 315
92 3300025910 Ga0207684_10070249 Ga0207684_100702492 315
93 3300025913 Ga0207695_10245065 Ga0207695_102450652 315
94 3300025918 Ga0207662_10076281 Ga0207662_100762812 315
95 3300025922 Ga0207646_10018446 Ga0207646_100184464 315
96 3300025935 Ga0207709_10088323 Ga0207709_100883232 315
97 3300026116 Ga0207674_10317351 Ga0207674_103173511 315
98 3300028379 Ga0268266_10002116 Ga0268266_1000211612 315
99 3300028794 Ga0307515_10026914 Ga0307515_100269145 315
100 3300031239 Ga0265328_10034593 Ga0265328_100345932 315
101 3300031251 Ga0265327_10008139 Ga0265327_100081391 315
102 3300031251 Ga0265327_10030092 Ga0265327_100300922 315
103 3300031251 Ga0265327_10053582 Ga0265327_100535822 315
104 3300031595 Ga0265313_10002045 Ga0265313_100020456 315
105 3300032002 Ga0307416_100167441 Ga0307416_1001674412 315
106 3300032005 Ga0307411_10038767 Ga0307411_100387673 315
107 3300042876 Ga0451577_0122317 Ga0451577_0122317_1365_2312 315
108 3300044673 Ga0453683_0015178 Ga0453683_0015178_1173_2120 315
109 3300044673 Ga0453683_0017848 Ga0453683_0017848_1207_2157 315
110 3300044712 Ga0453684_0000044 Ga0453684_0000044_77007_77954 315
111 3300044712 Ga0453684_0037255 Ga0453684_0037255_804_1751 315
112 3300044712 Ga0453684_0078843 Ga0453684_0078843_263_1210 315
113 3300044712 Ga0453684_0085910 Ga0453684_0085910_529_1476 315
114 3300044712 Ga0453684_0161474 Ga0453684_0161474_1224_2183 315
115 3300044712 Ga0453684_0336322 Ga0453684_0336322_467_1432 315
116 3300044712 Ga0453684_0436065 Ga0453684_0436065_338_1294 315
117 3300045049 Ga0466959_0011471 Ga0466959_0011471_3131_4096 315
118 3300045051 Ga0451576_0043953 Ga0451576_0043953_342_1289 315
119 3300045051 Ga0451576_0690451 Ga0451576_0690451_62_1009 315
120 3300048929 Ga0496126_0009874 Ga0496126_0009874_12_986 315
121 3300049580 Ga0501046_0056645 Ga0501046_0056645_873_1853 315
122 3300049590 Ga0501074_0230722 Ga0501074_0230722_130_1080 315
123 3300050507 nmdc:mga05p37_136462_c1 nmdc:mga05p37_136462_c1_817_1764 315
124 3300050507 nmdc:mga05p37_32407_c1 nmdc:mga05p37_32407_c1_238_1191 315
125 3300050508 nmdc:mga09592_70523_c1 nmdc:mga09592_70523_c1_223_1191 315
126 3300050509 nmdc:mga0qj67_11042_c1 nmdc:mga0qj67_11042_c1_3369_4337 315
127 3300050510 nmdc:mga06r32_2540_c1 nmdc:mga06r32_2540_c1_9864_10832 315
128 3300050510 nmdc:mga06r32_42001_c1 nmdc:mga06r32_42001_c1_274_1227 315
129 3300050511 nmdc:mga08y16_220739_c1 nmdc:mga08y16_220739_c1_583_1530 315
130 3300053079 Ga0500610_0122122 Ga0500610_0122122_354_1319 315
131 3300053092 Ga0500583_0001547 Ga0500583_0001547_1808_2785 315
132 3300053139 Ga0500568_0005368 Ga0500568_0005368_2385_3344 315
133 3300053139 Ga0500568_0011872 Ga0500568_0011872_994_1953 315
134 3300053156 Ga0500622_0009642 Ga0500622_0009642_1657_2616 315
135 3300060353 Ga0501082_0137614 Ga0501082_0137614_717_1718 315

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00291

PALP

Pyridoxal-phosphate dependent enzyme

15

304

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
5cvc-assembly1.cif.gz_A structure of maize serine racemase 0.9803 1 310
2gn2-assembly1.cif.gz_A crystal structure of tetrameric biodegradative threonine deaminase (tdcb) from salmonella typhimurium in complex with cmp at 2.5a resolution (hexagonal form) 0.9796 1 310
5cvc-assembly2.cif.gz_B-2 structure of maize serine racemase 0.9724 1 310
2zpu-assembly1.cif.gz_A crystal structure of modified serine racemase from s.pombe. 0.9635 1 310
5cvc-assembly1.cif.gz_A structure of maize serine racemase 0.9619 1 310
ID Description Score Start End Superfamily
5cvcC02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9714 52 146 3.40.50.1100
1wtcA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9582 1 310 3.40.50.1100
2gn1B02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9571 53 147 3.40.50.1100
2gn0D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9561 1 310 3.40.50.1100
3hmkA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9512 4 311 3.40.50.1100
ID Description Score Start End GO Terms
AF-V4SY39-F1-model_v4 Tryptophan synthase beta chain-like PALP domain-containing protein 0.9969 3 240 GO:0000287
GO:0003941
GO:0005524
GO:0008721
GO:0018114
GO:0030170
GO:0030378
GO:0070179
AF-A0A1G3QVW4-F1-model_v4 Serine dehydratase 0.9962 6 263 GO:0000287
GO:0003941
GO:0005524
GO:0018114
GO:0030170
GO:0030378
GO:0070179
AF-T1AWU3-F1-model_v4 Serine/threonine dehydratase 0.9962 1 180 GO:0000287
GO:0003941
GO:0005524
GO:0018114
GO:0030170
GO:0030378
GO:0070179
AF-A0A2G3BQ01-F1-model_v4 deleted 0.992 3 201
AF-A0A850LNU9-F1-model_v4 Pyridoxal-phosphate dependent enzyme 0.9915 1 117 GO:0000287
GO:0003941
GO:0005524
GO:0018114
GO:0030170
GO:0030378
GO:0070179

Feature Viewer

pLDDT pTM Quality
95.2 0.93 High
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Predicted Structure (AlphaFold2)

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