F160169

General Info

Members Datasets Scaffolds Average Seq Length
134 113 103 492

Family's Representative Sequence

Representative Sequence 3300028563|Ga0265319_1002973|Ga0265319_10029731
Length 532
Sequence LISFANLENSLGISPFLMAARLAAMAESERRGRACMDYSLKNLLSGTTVLALRGDADRAITGLVTDSRRVVPGALFFALEGARVNGADFVEEAIGRGAVAVVSARPPAKHSPAVWAQVLDVRVAMAEIARRFYRDPDEDLFLTGVTGTNGKTTVSMMTQFLLKGPDAPCGLIGTVRYEVGARTLPSYKTTPESVDLFALFDQMRDAGCTACAMEVSSHAVAQARIHGVRFDAVAFTNLTQDHLDYHGSLENYFNAKARLFTGECGHQARVAVINVDDPYGRVLVDRLPAGVEAVTYGFSASAGLRAVNVVLAPGGSQCEVEWTGGRARLTLALPGRYNILNALCALGLARAAGRDLNLLVPRLAQFSGVPGRMEKIDSSQPFQVLVDYAHTDDALSHALTMLRDVCAGRLLVVFGCGGNRDRAKRPRMTAAVQRWADFAWATADNPRKEPLAQIFADMRGGLTAPTRIRFVDDRRRAIALAMEEAKPGDCVLIAGKGHETFQEFADTVVPFDDRQVARELLNLRYGTTLRRP

Samples

Sample ID Description Type Environment
1 2511231119 Bacillus velezensis CAU B946 Isolate Rhizosphere
2 2540341094 Bacillus subtilis XF-1 Isolate Rhizosphere
3 2545555800 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
4 2576861599 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
5 2630968484 Bacillus methylotrophicus KACC 13105 Isolate Rhizosphere
6 2648501850 Bacillus amyloliquefaciens RHNK22 Isolate Rhizosphere
7 2671180844 Bacillus amyloliquefaciens Bs006 Isolate Unclassified
8 2684623219 Planctomyces sp. SH-PL14 Isolate Unclassified
9 2695420354 Bacillus sp. Co1-6 Isolate Unclassified
10 2716884898 Bacillus methylotrophicus FKM10 Isolate Rhizosphere
11 2808606399 Bacillus sp. SJZ110 Isolate Rhizosphere
12 2816332295 Bacillus paralicheniformis MDJK30 Isolate Rhizosphere
13 2860837431 Bacillus sp. WR11 Isolate Unclassified
14 2877768649 Bacillus amyloliquefaciens Y14 Isolate Rhizosphere
15 2880169592 Bacillus velezensis T20E-257 Isolate Unclassified
16 2897109615 Bacillus amyloliquefaciens YP6 Isolate Unclassified
17 2904560550 Bacillus velezensis 1780 Isolate Rhizosphere
18 2962290636 Bacillus subtilis TLO3 Isolate Rhizosphere
19 2969136845 Bacillus subtilis TLO3 Isolate Rhizosphere
20 2969141011 Bacillus velezensis MH25 Isolate Unclassified
21 2969765954 Bacillus intestinalis GM2 Isolate Rhizosphere
22 2969770375 Bacillus subtilis GM5 Isolate Rhizosphere
23 2971893375 Bacillus sp. HNA3 Isolate Rhizosphere
24 2980492589 Bacillus subtilis GQJK2 Isolate Rhizosphere
25 3006858327 Bacillus paralicheniformis SUBG0010 Isolate Unclassified
26 3006879489 Bacillus atrophaeus UCMB-5137 Isolate Rhizosphere
27 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
28 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
29 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
30 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
31 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
32 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
33 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
34 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
35 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
36 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
37 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
38 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
39 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
40 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
41 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
42 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
43 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
44 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
45 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
46 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
48 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
50 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
51 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
55 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
70 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
73 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
74 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
75 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
76 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
77 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
78 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
79 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
80 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
81 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
82 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
83 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
84 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
85 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
86 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
87 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
88 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
89 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
90 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
91 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
92 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
93 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
99 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
100 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
101 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
104 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
105 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
106 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
107 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
108 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
109 8022630665 Bacillus sp. PW192 Isolate Rhizosphere
110 8022653035 Bacillus sp. Rc4 Isolate Unclassified
111 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere
112 8051952484 Bacillus amyloliquefaciens K2 Isolate Rhizosphere
113 8052174270 Bacillus velezensis CH13 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.87
Metatranscriptomes 0
Isolates 23.13

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.24
Nodule 0
Rhizoplane 0
Rhizosphere 88.81
Stem 0
Stem Tuber 0
Unclassified 8.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000132 3300003187 Bacteria 99442
2 rootH2_10007569 3300003320 Bacteria 6496
3 Ga0070675_100022413 3300005354 Bacteria 5046
4 Ga0070674_100152920 3300005356 Bacteria 1743
5 Ga0070673_100174365 3300005364 Bacteria 1837
6 Ga0070706_100084219 3300005467 Bacteria 2946
7 Ga0070698_100067500 3300005471 Bacteria 3596
8 Ga0068853_100000007 3300005539 Bacteria 283307
9 Ga0070665_100015294 3300005548 Bacteria 7705
10 Ga0068855_100123373 3300005563 Bacteria 2964
11 Ga0068857_100010883 3300005577 Bacteria 7916
12 Ga0068861_100004987 3300005719 Bacteria 8944
13 Ga0068863_100170234 3300005841 Bacteria 2089
14 Ga0068858_100032139 3300005842 Bacteria 4875
15 Ga0068858_100045617 3300005842 Bacteria 4063
16 Ga0081539_10005607 3300005985 Bacteria 12638
17 Ga0075428_100015028 3300006844 Bacteria 8600
18 Ga0075428_100312853 3300006844 Bacteria 1688
19 Ga0075431_100005416 3300006847 Bacteria 12608
20 Ga0075431_100168940 3300006847 Bacteria 2248
21 Ga0075429_100006233 3300006880 Bacteria 10323
22 Ga0105240_10074509 3300009093 Bacteria 4189
23 Ga0105240_10080826 3300009093 Bacteria 3996
24 Ga0111539_10024923 3300009094 Bacteria 7333
25 Ga0105245_10029425 3300009098 Bacteria 4852
26 Ga0105245_10055615 3300009098 Bacteria 3555
27 Ga0114129_10003259 3300009147 Bacteria 22784
28 Ga0114129_10165214 3300009147 Bacteria 3021
29 Ga0105241_10022384 3300009174 Bacteria 4681
30 Ga0157370_10154336 3300013104 Unclassified 2136
31 Ga0157369_10023802 3300013105 Bacteria 6819
32 Ga0157374_10188245 3300013296 Bacteria 2018
33 Ga0157372_10327124 3300013307 Bacteria 1785
34 Ga0157376_10000658 3300014969 Bacteria 22335
35 Ga0209147_102761 3300025229 Bacteria 3968
36 Ga0207680_10102724 3300025903 Bacteria 1840
37 Ga0207684_10071407 3300025910 Bacteria 2950
38 Ga0207695_10000149 3300025913 Bacteria 207941
39 Ga0207659_10024857 3300025926 Bacteria 4020
40 Ga0207687_10033878 3300025927 Bacteria 3466
41 Ga0207691_10054246 3300025940 Bacteria 3657
42 Ga0207667_10117427 3300025949 Bacteria 2742
43 Ga0207651_10126260 3300025960 Bacteria 1950
44 Ga0207639_10000001 3300026041 Bacteria 1431562
45 Ga0207641_10153761 3300026088 Bacteria 2086
46 Ga0207674_10000506 3300026116 Bacteria 51206
47 Ga0207675_100003814 3300026118 Bacteria 14671
48 Ga0209974_10010722 3300027876 Bacteria 3088
49 Ga0207428_10049555 3300027907 Bacteria 3364
50 Ga0268266_10011265 3300028379 Bacteria 7781
51 Ga0268265_10116521 3300028380 Bacteria 2192
52 Ga0265337_1012205 3300028556 Bacteria 2929
53 Ga0265319_1002973 3300028563 Bacteria 9015
54 Ga0265319_1012813 3300028563 Bacteria 3369
55 Ga0265323_10001794 3300028653 Bacteria 10188
56 Ga0265322_10000285 3300028654 Bacteria 21602
57 Ga0265336_10001324 3300028666 Bacteria 11561
58 Ga0265338_10000027 3300028800 Bacteria 291580
59 Ga0265338_10000169 3300028800 Bacteria 120219
60 Ga0265338_10008112 3300028800 Bacteria 12825
61 Ga0265338_10019452 3300028800 Bacteria 7204
62 Ga0265320_10000825 3300031240 Bacteria 23361
63 Ga0265320_10001468 3300031240 Bacteria 17200
64 Ga0265316_10000008 3300031344 Bacteria 261948
65 Ga0265316_10041908 3300031344 Bacteria 3661
66 Ga0307409_100171258 3300031995 Bacteria 1911
67 Ga0373937_0029008 3300036401 Bacteria 5011
68 Ga0316582_0011979 3300036647 Bacteria 4823
69 Ga0316584_0027430 3300036712 Unclassified 4192
70 Ga0395901_0018344 3300038443 Bacteria 7144
71 Ga0451855_0274063 3300041511 Bacteria 2454
72 Ga0451577_0000354 3300042876 Bacteria 85568
73 Ga0453684_0002277 3300044712 Bacteria 47332
74 Ga0453684_0027188 3300044712 Bacteria 8215
75 Ga0453684_0201971 3300044712 Bacteria 2316
76 Ga0451576_0000141 3300045051 Bacteria 183004
77 Ga0451576_0001299 3300045051 Bacteria 43263
78 Ga0451576_0016159 3300045051 Bacteria 8247
79 Ga0495630_0000777 3300046517 Bacteria 22415
80 Ga0495624_0004525 3300046690 Bacteria 10166
81 Ga0495684_0010674 3300047471 Bacteria 7101
82 Ga0496126_0062054 3300048929 Bacteria 3355
83 Ga0501033_0079043 3300049570 Bacteria 2414
84 Ga0501034_0000381 3300049571 Bacteria 75686
85 Ga0501034_0001392 3300049571 Bacteria 32520
86 Ga0501037_0001907 3300049573 Bacteria 15144
87 Ga0501037_0035795 3300049573 Bacteria 3659
88 Ga0501038_0000457 3300049574 Bacteria 35723
89 Ga0501047_0035219 3300049581 Bacteria 4836
90 Ga0501070_0038597 3300049586 Bacteria 3985
91 Ga0501070_0128917 3300049586 Bacteria 2090
92 Ga0501080_0116233 3300049742 Bacteria 2480
93 Ga0501083_0037765 3300049744 Bacteria 3287
94 Ga0501044_0000291 3300049823 Bacteria 63806
95 nmdc:mga05p37_20_c1 3300050507 Bacteria 127415
96 nmdc:mga0qj67_25317_c1 3300050509 Bacteria 4584
97 nmdc:mga0qj67_49573_c1 3300050509 Bacteria 3319
98 nmdc:mga06r32_45947_c1 3300050510 Bacteria 4165
99 nmdc:mga06r32_95269_c1 3300050510 Bacteria 2913
100 nmdc:mga08y16_18545_c1 3300050511 Bacteria 7332
101 nmdc:mga0a205_92379_c1 3300050515 Bacteria 2924
102 Ga0500616_0000023 3300053153 Bacteria 456171
103 Ga0501082_0100316 3300060353 Bacteria 2504

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044712 Ga0453684_0201971 Ga0453684_0201971_1040_2290 407
2 3300026088 Ga0207641_10153761 Ga0207641_101537611 410
3 3300009174 Ga0105241_10022384 Ga0105241_100223843 441
4 3300050509 nmdc:mga0qj67_49573_c1 nmdc:mga0qj67_49573_c1_1345_2892 444
5 3300049570 Ga0501033_0079043 Ga0501033_0079043_13_1392 446
6 3300036712 Ga0316584_0027430 Ga0316584_0027430_485_1921 458
7 iso_pu_bacteria 2540341094 2540606650 458
8 3300036647 Ga0316582_0011979 Ga0316582_0011979_3098_4537 472
9 3300005539 Ga0068853_100000007 Ga0068853_100000007173 473
10 3300026041 Ga0207639_10000001 Ga0207639_1000000151 473
11 3300031344 Ga0265316_10000008 Ga0265316_10000008125 473
12 3300014969 Ga0157376_10000658 Ga0157376_1000065823 474
13 3300027876 Ga0209974_10010722 Ga0209974_100107222 474
14 iso_pu_bacteria 8036736890 8036737169 474
15 3300044712 Ga0453684_0027188 Ga0453684_0027188_4166_5623 475
16 3300045051 Ga0451576_0016159 Ga0451576_0016159_192_1649 475
17 3300041511 Ga0451855_0274063 Ga0451855_0274063_393_1850 476
18 3300045051 Ga0451576_0001299 Ga0451576_0001299_10915_12375 476
19 3300044712 Ga0453684_0002277 Ga0453684_0002277_2145_3608 477
20 3300028800 Ga0265338_10008112 Ga0265338_1000811214 478
21 3300005548 Ga0070665_100015294 Ga0070665_1000152943 479
22 3300028379 Ga0268266_10011265 Ga0268266_100112653 479
23 3300028653 Ga0265323_10001794 Ga0265323_100017948 480
24 3300028654 Ga0265322_10000285 Ga0265322_1000028521 480
25 3300028800 Ga0265338_10000027 Ga0265338_1000002737 480
26 iso_pu_bacteria 2684623219 2687238700 480
27 3300003320 rootH2_10007569 rootH2_100075695 482
28 3300031344 Ga0265316_10041908 Ga0265316_100419082 482
29 3300028556 Ga0265337_1012205 Ga0265337_10122052 483
30 3300028563 Ga0265319_1002973 Ga0265319_10029731 483
31 3300028563 Ga0265319_1012813 Ga0265319_10128132 483
32 3300028800 Ga0265338_10000169 Ga0265338_1000016911 483
33 3300031240 Ga0265320_10000825 Ga0265320_1000082516 483
34 3300031240 Ga0265320_10001468 Ga0265320_100014684 483
35 3300042876 Ga0451577_0000354 Ga0451577_0000354_10072_11559 483
36 3300005841 Ga0068863_100170234 Ga0068863_1001702342 484
37 3300005985 Ga0081539_10005607 Ga0081539_100056075 484
38 3300009098 Ga0105245_10055615 Ga0105245_100556153 484
39 3300013105 Ga0157369_10023802 Ga0157369_100238025 484
40 3300013296 Ga0157374_10188245 Ga0157374_101882451 484
41 3300028666 Ga0265336_10001324 Ga0265336_100013248 484
42 3300036401 Ga0373937_0029008 Ga0373937_0029008_2429_3910 484
43 3300045051 Ga0451576_0000141 Ga0451576_0000141_165407_166921 484
44 3300049571 Ga0501034_0000381 Ga0501034_0000381_8913_10430 484
45 3300049571 Ga0501034_0001392 Ga0501034_0001392_29390_30886 484
46 3300049573 Ga0501037_0001907 Ga0501037_0001907_2604_4121 484
47 3300049573 Ga0501037_0035795 Ga0501037_0035795_1196_2692 484
48 3300049574 Ga0501038_0000457 Ga0501038_0000457_24906_26423 484
49 3300049581 Ga0501047_0035219 Ga0501047_0035219_3286_4782 484
50 3300049586 Ga0501070_0128917 Ga0501070_0128917_193_1689 484
51 3300049744 Ga0501083_0037765 Ga0501083_0037765_1247_2725 484
52 3300049823 Ga0501044_0000291 Ga0501044_0000291_33764_35260 484
53 3300060353 Ga0501082_0100316 Ga0501082_0100316_103_1599 484
54 iso_pu_bacteria 2816332295 2817479778 484
55 iso_pu_bacteria 3006858327 3006860112 484
56 3300005354 Ga0070675_100022413 Ga0070675_1000224134 485
57 3300005356 Ga0070674_100152920 Ga0070674_1001529201 485
58 3300005364 Ga0070673_100174365 Ga0070673_1001743651 485
59 3300005467 Ga0070706_100084219 Ga0070706_1000842192 485
60 3300005471 Ga0070698_100067500 Ga0070698_1000675002 485
61 3300005563 Ga0068855_100123373 Ga0068855_1001233733 485
62 3300005577 Ga0068857_100010883 Ga0068857_1000108832 485
63 3300005719 Ga0068861_100004987 Ga0068861_1000049872 485
64 3300005842 Ga0068858_100032139 Ga0068858_1000321394 485
65 3300005842 Ga0068858_100045617 Ga0068858_1000456172 485
66 3300006844 Ga0075428_100015028 Ga0075428_1000150286 485
67 3300006844 Ga0075428_100312853 Ga0075428_1003128531 485
68 3300006847 Ga0075431_100005416 Ga0075431_1000054166 485
69 3300006847 Ga0075431_100168940 Ga0075431_1001689402 485
70 3300006880 Ga0075429_100006233 Ga0075429_1000062335 485
71 3300009093 Ga0105240_10074509 Ga0105240_100745093 485
72 3300009093 Ga0105240_10080826 Ga0105240_100808262 485
73 3300009098 Ga0105245_10029425 Ga0105245_100294252 485
74 3300009147 Ga0114129_10003259 Ga0114129_1000325914 485
75 3300009147 Ga0114129_10165214 Ga0114129_101652142 485
76 3300013104 Ga0157370_10154336 Ga0157370_101543362 485
77 3300013307 Ga0157372_10327124 Ga0157372_103271241 485
78 3300025903 Ga0207680_10102724 Ga0207680_101027241 485
79 3300025910 Ga0207684_10071407 Ga0207684_100714072 485
80 3300025913 Ga0207695_10000149 Ga0207695_1000014989 485
81 3300025926 Ga0207659_10024857 Ga0207659_100248573 485
82 3300025927 Ga0207687_10033878 Ga0207687_100338782 485
83 3300025940 Ga0207691_10054246 Ga0207691_100542461 485
84 3300025949 Ga0207667_10117427 Ga0207667_101174273 485
85 3300025960 Ga0207651_10126260 Ga0207651_101262601 485
86 3300026116 Ga0207674_10000506 Ga0207674_1000050626 485
87 3300026118 Ga0207675_100003814 Ga0207675_10000381413 485
88 3300028380 Ga0268265_10116521 Ga0268265_101165212 485
89 3300028800 Ga0265338_10019452 Ga0265338_100194525 485
90 3300031995 Ga0307409_100171258 Ga0307409_1001712582 485
91 3300038443 Ga0395901_0018344 Ga0395901_0018344_2709_4187 485
92 3300046517 Ga0495630_0000777 Ga0495630_0000777_20782_22248 485
93 3300046690 Ga0495624_0004525 Ga0495624_0004525_3623_5089 485
94 3300047471 Ga0495684_0010674 Ga0495684_0010674_1673_3139 485
95 3300050507 nmdc:mga05p37_20_c1 nmdc:mga05p37_20_c1_18587_20077 485
96 3300050509 nmdc:mga0qj67_25317_c1 nmdc:mga0qj67_25317_c1_2118_3596 485
97 3300050510 nmdc:mga06r32_45947_c1 nmdc:mga06r32_45947_c1_675_2165 485
98 3300050510 nmdc:mga06r32_95269_c1 nmdc:mga06r32_95269_c1_838_2316 485
99 3300050515 nmdc:mga0a205_92379_c1 nmdc:mga0a205_92379_c1_955_2445 485
100 3300049586 Ga0501070_0038597 Ga0501070_0038597_1333_2877 486
101 3300049742 Ga0501080_0116233 Ga0501080_0116233_423_1967 486
102 3300053153 Ga0500616_0000023 Ga0500616_0000023_394069_395613 486
103 iso_pu_bacteria 2511231119 2511699421 486
104 iso_pu_bacteria 2545555800 2545556367 486
105 iso_pu_bacteria 2576861599 2578929803 486
106 iso_pu_bacteria 2630968484 2631984104 486
107 iso_pu_bacteria 2648501850 2651532832 486
108 iso_pu_bacteria 2671180844 2674419722 486
109 iso_pu_bacteria 2695420354 2695627371 486
110 iso_pu_bacteria 2716884898 2717916836 486
111 iso_pu_bacteria 2808606399 2809054895 486
112 iso_pu_bacteria 2860837431 2860839079 486
113 iso_pu_bacteria 2877768649 2877770193 486
114 iso_pu_bacteria 2880169592 2880171197 486
115 iso_pu_bacteria 2897109615 2897111214 486
116 iso_pu_bacteria 2904560550 2904560735 486
117 iso_pu_bacteria 2962290636 2962292507 486
118 iso_pu_bacteria 2969136845 2969138474 486
119 iso_pu_bacteria 2969141011 2969142642 486
120 iso_pu_bacteria 2969765954 2969766477 486
121 iso_pu_bacteria 2969770375 2969772270 486
122 iso_pu_bacteria 2971893375 2971894960 486
123 iso_pu_bacteria 2980492589 2980494269 486
124 iso_pu_bacteria 3006879489 3006880718 486
125 iso_pu_bacteria 8022630665 8022630817 486
126 iso_pu_bacteria 8022653035 8022653408 486
127 iso_pu_bacteria 8051952484 8051952910 486
128 iso_pu_bacteria 8052174270 8052174591 486
129 3300009094 Ga0111539_10024923 Ga0111539_100249237 487
130 3300027907 Ga0207428_10049555 Ga0207428_100495552 487
131 3300048929 Ga0496126_0062054 Ga0496126_0062054_1107_2606 487
132 3300050511 nmdc:mga08y16_18545_c1 nmdc:mga08y16_18545_c1_5369_6901 487
133 3300025229 Ga0209147_102761 Ga0209147_1027613 490
134 3300003187 JGI25151J46595_10000132 JGI25151J46595_1000013210 491

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02875

Mur_ligase_C

Mur ligase, glutamate ligase domain

371

497

0.96

PF08245

Mur_ligase_M

Mur ligase middle domain

145

349

0.94

PF01225

Mur_ligase

Mur ligase family, catalytic domain

59

133

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2xja-assembly3.cif.gz_C structure of mure from m.tuberculosis with dipeptide and adp 0.9146 24 488
2xja-assembly1.cif.gz_A structure of mure from m.tuberculosis with dipeptide and adp 0.9071 24 488
4bub-assembly2.cif.gz_B crystal structure of mure ligase from thermotoga maritima in complex with adp 0.9063 1 491
2wtz-assembly2.cif.gz_B mure ligase of mycobacterium tuberculosis 0.9049 24 489
4bub-assembly2.cif.gz_B crystal structure of mure ligase from thermotoga maritima in complex with adp 0.9045 1 491
ID Description Score Start End Superfamily
4c13A02 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.9655 99 337 3.40.1190.10
4c13A02 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.9576 99 337 3.40.1190.10
af_I1KPB4_561_737_3.90.190.20 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9487 340 490 3.90.190.20
af_P9WJL1_1_85_3.40.1390.10 Alpha Beta;3-Layer(aba) Sandwich;Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1;MurE/MurF, N-terminal domain 0.9413 25 81 3.40.1390.10
1e8cB03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9363 339 477 3.90.190.20
ID Description Score Start End GO Terms
AF-A0A2N1ZZU6-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) (Meso-A2pm-adding enzyme) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (UDP-MurNAc-tripeptide synthetase) (UDP-N-acetylmuramyl-tripeptide synthetase) 0.9717 1 487 GO:0000287
GO:0005524
GO:0005737
GO:0008360
GO:0008765
GO:0009252
GO:0051301
GO:0071555
AF-A0A2V6AFD5-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9687 1 170 GO:0005524
GO:0009058
GO:0016881
AF-A0A2N1ZZU6-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) (Meso-A2pm-adding enzyme) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (UDP-MurNAc-tripeptide synthetase) (UDP-N-acetylmuramyl-tripeptide synthetase) 0.9677 1 487 GO:0000287
GO:0005524
GO:0005737
GO:0008360
GO:0008765
GO:0009252
GO:0051301
GO:0071555
AF-A0A496UJS6-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9664 294 488 GO:0005524
GO:0009058
GO:0016881
AF-A0A3M1B732-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) (Meso-A2pm-adding enzyme) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (UDP-MurNAc-tripeptide synthetase) (UDP-N-acetylmuramyl-tripeptide synthetase) 0.9654 1 489 GO:0000287
GO:0005524
GO:0005737
GO:0008360
GO:0008765
GO:0009252
GO:0051301
GO:0071555

Feature Viewer

pLDDT pTM Quality
91.75 0.88 High
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Predicted Structure (AlphaFold2)

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