F159648

General Info

Members Datasets Scaffolds Average Seq Length
134 88 133 235

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10108179|Ga0114129_101081792
Length 256
Sequence MSTIYSQAAVPGGGNDARSALLMTELVIRTEKLTRSYSMGGNAVVALREADLTIRAGEFIALMGASGSGKSTLLNLIGLLDRATSGEYWLEGRAAWSLRRDELSELRGRRIGFIFQNFNLLPRLSAWENVALPLAYRKGEFGAQDQLARAREALARVQLDHRIEHQPMELSGGERQRVAIARALITQPAVILADEPTGNLDSKTGVEIMHLLKELNDEDRTIIVVTHDSNVAHFANRICHMRDGILTEGESDHVAA

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
7 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
8 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
22 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
23 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
27 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
43 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
44 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
59 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
60 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
61 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
62 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
63 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
64 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
65 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
66 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
67 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
68 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
69 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
70 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
71 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
72 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
73 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
74 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
77 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
78 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
79 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
80 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
81 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049851 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_B_0_drought Metagenome Rhizosphere
83 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
84 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
85 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
86 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
87 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
88 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.51
Metatranscriptomes 0.75
Isolates 0.75

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.75
Nodule 0
Rhizoplane 1.49
Rhizosphere 97.01
Stem 0
Stem Tuber 0
Unclassified 0.75

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_3276705 2162886007 Bacteria 6944
2 Ga0065704_10070879 3300005289 Bacteria 15107
3 Ga0065704_10097785 3300005289 Bacteria 2378
4 Ga0065707_10000514 3300005295 Bacteria 27365
5 Ga0070670_100114384 3300005331 Bacteria 2326
6 Ga0070691_10025488 3300005341 Bacteria 2753
7 Ga0070691_10052985 3300005341 Bacteria 1940
8 Ga0070673_100678543 3300005364 Bacteria 945
9 Ga0070678_100257635 3300005456 Bacteria 1465
10 Ga0070706_100064679 3300005467 Bacteria 3381
11 Ga0070707_100039917 3300005468 Bacteria 4489
12 Ga0070707_100064377 3300005468 Bacteria 3521
13 Ga0070707_100626341 3300005468 Bacteria 1038
14 Ga0070698_100045419 3300005471 Bacteria 4496
15 Ga0070698_100116887 3300005471 Bacteria 2629
16 Ga0070698_100382352 3300005471 Bacteria 1340
17 Ga0070698_100706036 3300005471 Bacteria 951
18 Ga0070699_100002529 3300005518 Bacteria 16422
19 Ga0070684_100070294 3300005535 Bacteria 3080
20 Ga0070665_100005715 3300005548 Bacteria 12766
21 Ga0068855_100000210 3300005563 Bacteria 74786
22 Ga0068854_100019469 3300005578 Bacteria 4575
23 Ga0068854_100227951 3300005578 Bacteria 1477
24 Ga0068859_100516617 3300005617 Bacteria 1289
25 Ga0068851_10331970 3300005834 Bacteria 881
26 Ga0068862_100099792 3300005844 Unclassified 2539
27 Ga0081539_10007587 3300005985 Bacteria 9805
28 Ga0081539_10055416 3300005985 Bacteria 2206
29 Ga0070712_100100084 3300006175 Bacteria 2141
30 Ga0075427_10000889 3300006194 Bacteria 3676
31 Ga0075428_100151754 3300006844 Bacteria 2517
32 Ga0075428_100381634 3300006844 Bacteria 1511
33 Ga0075430_100281082 3300006846 Bacteria 1377
34 Ga0075430_100294157 3300006846 Bacteria 1343
35 Ga0075431_100157146 3300006847 Bacteria 2339
36 Ga0075429_100037292 3300006880 Bacteria 4232
37 Ga0075429_100060582 3300006880 Bacteria 3296
38 Ga0075429_100156084 3300006880 Bacteria 1998
39 Ga0075429_100191098 3300006880 Bacteria 1794
40 Ga0075429_100468633 3300006880 Bacteria 1103
41 Ga0097620_100516627 3300006931 Bacteria 1289
42 Ga0105240_10000098 3300009093 Bacteria 178435
43 Ga0105240_10010495 3300009093 Bacteria 13021
44 Ga0105240_10116523 3300009093 Bacteria 3223
45 Ga0111539_10038971 3300009094 Bacteria 5731
46 Ga0114129_10108179 3300009147 Bacteria 3839
47 Ga0114129_10164867 3300009147 Bacteria 3025
48 Ga0114129_10387397 3300009147 Bacteria 1844
49 Ga0114129_10493055 3300009147 Bacteria 1601
50 Ga0105243_10382882 3300009148 Bacteria 1302
51 Ga0105249_10354209 3300009553 Bacteria 1488
52 Ga0105239_10069301 3300010375 Bacteria 3875
53 Ga0105246_10020939 3300011119 Bacteria 4200
54 Ga0157370_10038943 3300013104 Bacteria 4597
55 Ga0157369_10045151 3300013105 Bacteria 4794
56 Ga0157378_10030571 3300013297 Bacteria 4759
57 Ga0157378_10095914 3300013297 Bacteria 2702
58 Ga0163162_10044585 3300013306 Bacteria 4442
59 Ga0157372_10015046 3300013307 Bacteria 8281
60 Ga0157372_10279416 3300013307 Bacteria 1941
61 Ga0157375_10007987 3300013308 Bacteria 9266
62 Ga0163163_11345369 3300014325 Bacteria 776
63 Ga0157379_10030780 3300014968 Bacteria 4779
64 Ga0206352_10735866 3300020078 Bacteria 902
65 Ga0207647_10011231 3300025904 Bacteria 6289
66 Ga0207684_10065446 3300025910 Bacteria 3086
67 Ga0207695_10000568 3300025913 Bacteria 75553
68 Ga0207695_10020937 3300025913 Bacteria 7474
69 Ga0207695_10118619 3300025913 Bacteria 2617
70 Ga0207671_10001564 3300025914 Bacteria 26154
71 Ga0207646_10033919 3300025922 Bacteria 4613
72 Ga0207644_10241254 3300025931 Bacteria 1439
73 Ga0207691_10260536 3300025940 Bacteria 1495
74 Ga0207667_10000246 3300025949 Bacteria 76379
75 Ga0207712_10410953 3300025961 Bacteria 1140
76 Ga0207640_10281745 3300025981 Bacteria 1306
77 Ga0207677_10322208 3300026023 Bacteria 1285
78 Ga0207683_10338963 3300026121 Bacteria 1379
79 Ga0268266_10005697 3300028379 Bacteria 11550
80 Ga0268265_10046428 3300028380 Bacteria 3247
81 Ga0307517_10011845 3300028786 Bacteria 12048
82 Ga0265338_10022579 3300028800 Bacteria 6508
83 Ga0265324_10046692 3300029957 Bacteria 1490
84 Ga0265327_10104104 3300031251 Bacteria 1365
85 Ga0265313_10167829 3300031595 Bacteria 929
86 Ga0307405_10398406 3300031731 Bacteria 1077
87 Ga0307405_10464539 3300031731 Bacteria 1007
88 Ga0307412_10087981 3300031911 Bacteria 2166
89 Ga0307409_100561099 3300031995 Bacteria 1123
90 Ga0307414_10423285 3300032004 Bacteria 1162
91 Ga0307415_100511651 3300032126 Bacteria 1052
92 Ga0373950_0012441 3300034818 Unclassified 1405
93 Ga0373934_0045690 3300035086 Bacteria 1732
94 Ga0316574_0005010 3300035398 Bacteria 7030
95 Ga0395899_0000021 3300037312 Bacteria 391702
96 Ga0451800_0859488 3300041459 Bacteria 1011
97 Ga0451577_0306301 3300042876 Bacteria 1440
98 Ga0453683_0021825 3300044673 Bacteria 4084
99 Ga0453683_0088146 3300044673 Bacteria 1945
100 Ga0453683_0105839 3300044673 Bacteria 1768
101 Ga0453683_0459060 3300044673 Unclassified 824
102 Ga0453684_0003088 3300044712 Bacteria 38418
103 Ga0453684_0004318 3300044712 Bacteria 30262
104 Ga0453684_0016578 3300044712 Bacteria 11501
105 Ga0453684_0224887 3300044712 Bacteria 2171
106 Ga0453684_0542282 3300044712 Bacteria 1282
107 Ga0453684_0547358 3300044712 Bacteria 1275
108 Ga0453684_0729620 3300044712 Bacteria 1074
109 Ga0451576_0019647 3300045051 Bacteria 7372
110 Ga0451576_0211114 3300045051 Bacteria 2027
111 Ga0451576_0211544 3300045051 Unclassified 2025
112 Ga0451576_0956629 3300045051 Bacteria 898
113 Ga0495642_0308363 3300046528 Bacteria 694
114 Ga0496115_0001781 3300048918 Bacteria 15408
115 Ga0495682_0000060 3300049460 Bacteria 102283
116 Ga0501217_135736 3300049661 Bacteria 725
117 Ga0501035_0041304 3300049822 Bacteria 4165
118 Ga0501212_023103 3300049851 Bacteria 973
119 nmdc:mga05p37_148531_c1 3300050507 Bacteria 2869
120 nmdc:mga05p37_183364_c1 3300050507 Bacteria 2546
121 nmdc:mga05p37_20910_c1 3300050507 Bacteria 7921
122 nmdc:mga09592_124073_c1 3300050508 Bacteria 2220
123 nmdc:mga09592_14336_c1 3300050508 Bacteria 6471
124 nmdc:mga09592_154109_c1 3300050508 Bacteria 1983
125 nmdc:mga09592_21047_c1 3300050508 Bacteria 5371
126 nmdc:mga09592_2548_c1 3300050508 Bacteria 14745
127 nmdc:mga09592_316536_c1 3300050508 Bacteria 1352
128 nmdc:mga0qj67_278508_c1 3300050509 Bacteria 1356
129 nmdc:mga0qj67_341345_c1 3300050509 Bacteria 1211
130 nmdc:mga06r32_138567_c1 3300050510 Bacteria 2408
131 nmdc:mga06r32_537917_c2 3300050510 Bacteria 801
132 nmdc:mga0a205_524506_c1 3300050515 Bacteria 1041
133 Ga0500646_0049018 3300053090 Bacteria 1213

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046528 Ga0495642_0308363 Ga0495642_0308363_85_675 192
2 3300045051 Ga0451576_0956629 Ga0451576_0956629_212_850 212
3 3300049661 Ga0501217_135736 Ga0501217_135736_35_706 216
4 3300044673 Ga0453683_0105839 Ga0453683_0105839_21_674 217
5 3300009553 Ga0105249_10354209 Ga0105249_103542092 218
6 3300049851 Ga0501212_023103 Ga0501212_023103_29_685 218
7 3300050508 nmdc:mga09592_154109_c1 nmdc:mga09592_154109_c1_845_1501 218
8 3300050510 nmdc:mga06r32_537917_c2 nmdc:mga06r32_537917_c2_28_684 218
9 3300050515 nmdc:mga0a205_524506_c1 nmdc:mga0a205_524506_c1_366_1022 218
10 3300049460 Ga0495682_0000060 Ga0495682_0000060_43306_43986 223
11 3300005289 Ga0065704_10097785 Ga0065704_100977852 227
12 3300044673 Ga0453683_0021825 Ga0453683_0021825_1488_2174 227
13 iso_pu_bacteria 2910245624 2910249549 227
14 3300013297 Ga0157378_10095914 Ga0157378_100959142 230
15 3300037312 Ga0395899_0000021 Ga0395899_0000021_294239_294931 230
16 3300005331 Ga0070670_100114384 Ga0070670_1001143843 231
17 3300005364 Ga0070673_100678543 Ga0070673_1006785431 231
18 3300005456 Ga0070678_100257635 Ga0070678_1002576352 231
19 3300005548 Ga0070665_100005715 Ga0070665_10000571512 231
20 3300005834 Ga0068851_10331970 Ga0068851_103319702 231
21 3300006175 Ga0070712_100100084 Ga0070712_1001000842 231
22 3300009093 Ga0105240_10010495 Ga0105240_100104958 231
23 3300010375 Ga0105239_10069301 Ga0105239_100693012 231
24 3300013297 Ga0157378_10030571 Ga0157378_100305715 231
25 3300013307 Ga0157372_10279416 Ga0157372_102794162 231
26 3300025904 Ga0207647_10011231 Ga0207647_100112313 231
27 3300025913 Ga0207695_10020937 Ga0207695_100209378 231
28 3300025913 Ga0207695_10118619 Ga0207695_101186192 231
29 3300025931 Ga0207644_10241254 Ga0207644_102412541 231
30 3300025940 Ga0207691_10260536 Ga0207691_102605362 231
31 3300026023 Ga0207677_10322208 Ga0207677_103222082 231
32 3300026121 Ga0207683_10338963 Ga0207683_103389632 231
33 3300028379 Ga0268266_10005697 Ga0268266_1000569711 231
34 3300028800 Ga0265338_10022579 Ga0265338_100225795 231
35 3300029957 Ga0265324_10046692 Ga0265324_100466922 231
36 3300031251 Ga0265327_10104104 Ga0265327_101041042 231
37 3300035086 Ga0373934_0045690 Ga0373934_0045690_521_1240 231
38 3300044712 Ga0453684_0004318 Ga0453684_0004318_17247_17945 231
39 3300044712 Ga0453684_0016578 Ga0453684_0016578_2443_3141 231
40 3300044712 Ga0453684_0224887 Ga0453684_0224887_489_1217 231
41 3300044712 Ga0453684_0542282 Ga0453684_0542282_373_1071 231
42 3300044712 Ga0453684_0547358 Ga0453684_0547358_32_730 231
43 3300044712 Ga0453684_0729620 Ga0453684_0729620_179_877 231
44 3300045051 Ga0451576_0019647 Ga0451576_0019647_91_786 231
45 3300048918 Ga0496115_0001781 Ga0496115_0001781_8027_8728 231
46 3300049822 Ga0501035_0041304 Ga0501035_0041304_2327_3055 231
47 3300005341 Ga0070691_10025488 Ga0070691_100254883 232
48 3300005341 Ga0070691_10052985 Ga0070691_100529853 232
49 3300005535 Ga0070684_100070294 Ga0070684_1000702942 232
50 3300005563 Ga0068855_100000210 Ga0068855_10000021031 232
51 3300005578 Ga0068854_100019469 Ga0068854_1000194694 232
52 3300005578 Ga0068854_100227951 Ga0068854_1002279512 232
53 3300006844 Ga0075428_100151754 Ga0075428_1001517542 232
54 3300006846 Ga0075430_100294157 Ga0075430_1002941571 232
55 3300006880 Ga0075429_100060582 Ga0075429_1000605822 232
56 3300009093 Ga0105240_10000098 Ga0105240_1000009882 232
57 3300009093 Ga0105240_10116523 Ga0105240_101165234 232
58 3300013104 Ga0157370_10038943 Ga0157370_100389433 232
59 3300013105 Ga0157369_10045151 Ga0157369_100451517 232
60 3300013306 Ga0163162_10044585 Ga0163162_100445852 232
61 3300013307 Ga0157372_10015046 Ga0157372_100150466 232
62 3300013308 Ga0157375_10007987 Ga0157375_100079874 232
63 3300014968 Ga0157379_10030780 Ga0157379_100307805 232
64 3300020078 Ga0206352_10735866 Ga0206352_107358661 232
65 3300025913 Ga0207695_10000568 Ga0207695_1000056832 232
66 3300025914 Ga0207671_10001564 Ga0207671_100015649 232
67 3300025949 Ga0207667_10000246 Ga0207667_1000024639 232
68 3300025981 Ga0207640_10281745 Ga0207640_102817452 232
69 3300028786 Ga0307517_10011845 Ga0307517_100118455 232
70 3300031595 Ga0265313_10167829 Ga0265313_101678292 232
71 3300031995 Ga0307409_100561099 Ga0307409_1005610992 232
72 3300032004 Ga0307414_10423285 Ga0307414_104232851 232
73 3300044712 Ga0453684_0003088 Ga0453684_0003088_7191_7889 232
74 3300050508 nmdc:mga09592_2548_c1 nmdc:mga09592_2548_c1_9593_10300 232
75 3300050509 nmdc:mga0qj67_278508_c1 nmdc:mga0qj67_278508_c1_63_770 232
76 3300053090 Ga0500646_0049018 Ga0500646_0049018_490_1191 232
77 3300005985 Ga0081539_10055416 Ga0081539_100554162 233
78 3300006880 Ga0075429_100037292 Ga0075429_1000372924 233
79 3300009148 Ga0105243_10382882 Ga0105243_103828822 233
80 3300025961 Ga0207712_10410953 Ga0207712_104109532 233
81 3300028380 Ga0268265_10046428 Ga0268265_100464283 233
82 3300035398 Ga0316574_0005010 Ga0316574_0005010_5949_6665 233
83 3300050508 nmdc:mga09592_14336_c1 nmdc:mga09592_14336_c1_185_943 233
84 2162886007 SwRhRL2b_contig_3276705 SwRhRL2b_0887.00002580 234
85 3300005289 Ga0065704_10070879 Ga0065704_1007087912 234
86 3300005295 Ga0065707_10000514 Ga0065707_100005148 234
87 3300005467 Ga0070706_100064679 Ga0070706_1000646792 234
88 3300005468 Ga0070707_100039917 Ga0070707_1000399173 234
89 3300005468 Ga0070707_100064377 Ga0070707_1000643772 234
90 3300005468 Ga0070707_100626341 Ga0070707_1006263412 234
91 3300005471 Ga0070698_100045419 Ga0070698_1000454193 234
92 3300005471 Ga0070698_100116887 Ga0070698_1001168872 234
93 3300005471 Ga0070698_100382352 Ga0070698_1003823522 234
94 3300005471 Ga0070698_100706036 Ga0070698_1007060361 234
95 3300005518 Ga0070699_100002529 Ga0070699_1000025299 234
96 3300005617 Ga0068859_100516617 Ga0068859_1005166172 234
97 3300005844 Ga0068862_100099792 Ga0068862_1000997922 234
98 3300005985 Ga0081539_10007587 Ga0081539_100075875 234
99 3300006194 Ga0075427_10000889 Ga0075427_100008893 234
100 3300006844 Ga0075428_100381634 Ga0075428_1003816342 234
101 3300006846 Ga0075430_100281082 Ga0075430_1002810822 234
102 3300006847 Ga0075431_100157146 Ga0075431_1001571462 234
103 3300006880 Ga0075429_100156084 Ga0075429_1001560842 234
104 3300006880 Ga0075429_100191098 Ga0075429_1001910982 234
105 3300006880 Ga0075429_100468633 Ga0075429_1004686331 234
106 3300006931 Ga0097620_100516627 Ga0097620_1005166272 234
107 3300009094 Ga0111539_10038971 Ga0111539_100389712 234
108 3300009147 Ga0114129_10108179 Ga0114129_101081792 234
109 3300009147 Ga0114129_10164867 Ga0114129_101648672 234
110 3300009147 Ga0114129_10387397 Ga0114129_103873971 234
111 3300009147 Ga0114129_10493055 Ga0114129_104930552 234
112 3300011119 Ga0105246_10020939 Ga0105246_100209394 234
113 3300014325 Ga0163163_11345369 Ga0163163_113453691 234
114 3300025910 Ga0207684_10065446 Ga0207684_100654462 234
115 3300025922 Ga0207646_10033919 Ga0207646_100339194 234
116 3300031731 Ga0307405_10398406 Ga0307405_103984061 234
117 3300031731 Ga0307405_10464539 Ga0307405_104645391 234
118 3300031911 Ga0307412_10087981 Ga0307412_100879812 234
119 3300032126 Ga0307415_100511651 Ga0307415_1005116512 234
120 3300034818 Ga0373950_0012441 Ga0373950_0012441_394_1098 234
121 3300041459 Ga0451800_0859488 Ga0451800_0859488_227_937 234
122 3300042876 Ga0451577_0306301 Ga0451577_0306301_525_1229 234
123 3300044673 Ga0453683_0088146 Ga0453683_0088146_1173_1877 234
124 3300044673 Ga0453683_0459060 Ga0453683_0459060_60_764 234
125 3300045051 Ga0451576_0211114 Ga0451576_0211114_731_1435 234
126 3300045051 Ga0451576_0211544 Ga0451576_0211544_207_911 234
127 3300050507 nmdc:mga05p37_148531_c1 nmdc:mga05p37_148531_c1_1489_2193 234
128 3300050507 nmdc:mga05p37_183364_c1 nmdc:mga05p37_183364_c1_793_1509 234
129 3300050507 nmdc:mga05p37_20910_c1 nmdc:mga05p37_20910_c1_2200_2916 234
130 3300050508 nmdc:mga09592_124073_c1 nmdc:mga09592_124073_c1_691_1407 234
131 3300050508 nmdc:mga09592_21047_c1 nmdc:mga09592_21047_c1_44_760 234
132 3300050508 nmdc:mga09592_316536_c1 nmdc:mga09592_316536_c1_406_1176 234
133 3300050509 nmdc:mga0qj67_341345_c1 nmdc:mga0qj67_341345_c1_276_992 234
134 3300050510 nmdc:mga06r32_138567_c1 nmdc:mga06r32_138567_c1_391_1107 234

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00005

ABC_tran

ABC transporter

47

198

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
5xu1-assembly1.cif.gz_A structure of a non-canonical abc transporter from streptococcus pneumoniae r6 0.9748 4 227
5xu1-assembly1.cif.gz_B structure of a non-canonical abc transporter from streptococcus pneumoniae r6 0.9739 4 230
5ws4-assembly1.cif.gz_B crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii 0.968 5 227
5xu1-assembly1.cif.gz_B structure of a non-canonical abc transporter from streptococcus pneumoniae r6 0.9612 4 230
5nik-assembly1.cif.gz_J structure of the macab-tolc abc-type tripartite multidrug efflux pump 0.9605 4 226
ID Description Score Start End Superfamily
5xu1A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9748 4 227 3.40.50.300
af_Q8T665_1_248_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9636 3 227 3.40.50.300
2pclA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9587 4 225 3.40.50.300
5xu1A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9575 4 227 3.40.50.300
af_A4I4M8_123_401_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9536 32 228 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A401N8Q6-F1-model_v4 deleted 0.9876 3 228
AF-A0A1Y4CW73-F1-model_v4 ABC transporter ATP-binding protein 0.9864 3 227 GO:0005524
GO:0016887
AF-A0A1Q6ERV0-F1-model_v4 deleted 0.9852 9 227
AF-A0A2A2RPT4-F1-model_v4 Macrolide ABC transporter ATP-binding protein 0.9823 4 228 GO:0005524
GO:0005886
GO:0016887
GO:0022857
AF-A0A1H5S202-F1-model_v4 deleted 0.9822 5 227

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pLDDT pTM Quality
92.5 0.89 High
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Predicted Structure (AlphaFold2)

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