F158066

General Info

Members Datasets Scaffolds Average Seq Length
133 91 133 304

Family's Representative Sequence

Representative Sequence 3300059421|Ga0590071_001226|Ga0590071_001226_391_1368
Length 325
Sequence MSSQPFGVTGPERFAAQAEEQPVSAAIESSDLTRRFGRMEAVRGLDLHVPAGSVFALIGPNGAGKTTTIKLLMNLVRPTGGRATVLGVDSRQIGISELARIGYVSENQRLPDWMTPAELLDYCRPFYPTWDPDLVQKLQSDLGLVNRSRLRNLSRGTRMKAALLASLAYRPELIVLDEPFTGLDPLVRDELIRSLLEVSTDQPRTVFVSSHDVDEVERLADWVGFMAEGRLVFAEPVSSLLARFRLVEVTGEAALAPEFPGNPEWLLQGRAGRTLRFVDTMHDRADAEPRIARAFPGSSIRRTPLSLREIFVTLAADMKDRAVVS

Samples

Sample ID Description Type Environment
1 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
2 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
9 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
10 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
11 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
12 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
13 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
14 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
15 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
16 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
17 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
18 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
19 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
20 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
21 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
22 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
27 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
28 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
29 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
30 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
34 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
35 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
36 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
37 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
38 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
39 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
40 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
41 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
42 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
43 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
44 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
45 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
46 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
47 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
48 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
49 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
50 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
51 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
52 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
53 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
54 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
55 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
56 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
57 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
58 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
59 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
60 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
61 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
62 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
63 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
64 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
71 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
72 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
73 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
74 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
75 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
77 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
78 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
79 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
80 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
81 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
82 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
83 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
84 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
85 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
86 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
87 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
88 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
89 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
90 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
91 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.52
Nodule 0
Rhizoplane 0
Rhizosphere 91.73
Stem 0
Stem Tuber 0
Unclassified 0.75

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10119243 3300003322 Bacteria 6781
2 Ga0065714_10128944 3300005288 Bacteria 1268
3 Ga0070683_100082396 3300005329 Bacteria 3013
4 Ga0070661_100124204 3300005344 Bacteria 1935
5 Ga0070713_100155631 3300005436 Bacteria 2037
6 Ga0070705_100036285 3300005440 Bacteria 2771
7 Ga0070706_100244873 3300005467 Bacteria 1674
8 Ga0070684_100071350 3300005535 Bacteria 3057
9 Ga0070684_100183299 3300005535 Bacteria 1904
10 Ga0070697_100076275 3300005536 Bacteria 2757
11 Ga0068862_100087782 3300005844 Bacteria 2705
12 Ga0068862_100363365 3300005844 Bacteria 1346
13 Ga0081539_10095940 3300005985 Bacteria 1522
14 Ga0075368_10051137 3300006042 Bacteria 1642
15 Ga0075364_10040912 3300006051 Bacteria 3007
16 Ga0070716_100120910 3300006173 Bacteria 1639
17 Ga0075367_10098382 3300006178 Bacteria 1786
18 Ga0075367_10151811 3300006178 Bacteria 1438
19 Ga0075366_10007115 3300006195 Bacteria 6160
20 Ga0075366_10161304 3300006195 Bacteria 1359
21 Ga0075428_100002259 3300006844 Bacteria 20864
22 Ga0075428_100004146 3300006844 Bacteria 15956
23 Ga0075428_100092465 3300006844 Bacteria 3298
24 Ga0075430_100000470 3300006846 Bacteria 30141
25 Ga0075430_100015404 3300006846 Bacteria 6508
26 Ga0075430_100257899 3300006846 Bacteria 1444
27 Ga0075431_100002795 3300006847 Bacteria 16913
28 Ga0075431_100020804 3300006847 Bacteria 6705
29 Ga0075431_100264846 3300006847 Bacteria 1743
30 Ga0075433_10063695 3300006852 Bacteria 3231
31 Ga0075434_100106877 3300006871 Bacteria 2808
32 Ga0075434_100242309 3300006871 Bacteria 1823
33 Ga0075429_100002481 3300006880 Bacteria 15520
34 Ga0075429_100071422 3300006880 Bacteria 3022
35 Ga0105240_10095757 3300009093 Bacteria 3619
36 Ga0111539_10004040 3300009094 Bacteria 19257
37 Ga0114129_10001568 3300009147 Bacteria 31016
38 Ga0114129_10004533 3300009147 Bacteria 19610
39 Ga0114129_10024142 3300009147 Bacteria 8616
40 Ga0114129_10151490 3300009147 Bacteria 3174
41 Ga0114129_10243310 3300009147 Bacteria 2418
42 Ga0114129_10605703 3300009147 Bacteria 1419
43 Ga0105237_10020003 3300009545 Bacteria 6911
44 Ga0157374_10126996 3300013296 Bacteria 2465
45 Ga0163162_10481527 3300013306 Bacteria 1372
46 Ga0163162_10768769 3300013306 Bacteria 1082
47 Ga0157376_10056521 3300014969 Bacteria 3278
48 Ga0157376_10082619 3300014969 Bacteria 2761
49 Ga0207684_10166585 3300025910 Bacteria 1899
50 Ga0207695_10044660 3300025913 Bacteria 4710
51 Ga0207671_10102200 3300025914 Bacteria 2172
52 Ga0207428_10006174 3300027907 Bacteria 11071
53 Ga0265337_1004077 3300028556 Bacteria 6154
54 Ga0265337_1024427 3300028556 Bacteria 1849
55 Ga0265319_1000418 3300028563 Bacteria 30687
56 Ga0265323_10009452 3300028653 Bacteria 3983
57 Ga0265330_10023884 3300031235 Bacteria 2774
58 Ga0265320_10000281 3300031240 Bacteria 41248
59 Ga0265331_10017661 3300031250 Bacteria 3714
60 Ga0265327_10000127 3300031251 Bacteria 166247
61 Ga0265327_10103020 3300031251 Bacteria 1374
62 Ga0265316_10029106 3300031344 Bacteria 4547
63 Ga0307408_100018916 3300031548 Bacteria 4631
64 Ga0307408_100300947 3300031548 Bacteria 1343
65 Ga0307408_100423426 3300031548 Bacteria 1149
66 Ga0265313_10000016 3300031595 Bacteria 154004
67 Ga0316578_10212018 3300031728 Bacteria 1165
68 Ga0307406_10135645 3300031901 Bacteria 1734
69 Ga0307412_10024431 3300031911 Bacteria 3730
70 Ga0307412_10268367 3300031911 Bacteria 1334
71 Ga0307416_100045293 3300032002 Unclassified 3463
72 Ga0307416_100058629 3300032002 Bacteria 3123
73 Ga0307411_10034267 3300032005 Bacteria 3158
74 Ga0316583_10000786 3300032133 Bacteria 9999
75 Ga0373943_0049044 3300035170 Bacteria 2071
76 Ga0373947_0074233 3300035725 Bacteria 2092
77 Ga0373937_0011785 3300036401 Bacteria 7672
78 Ga0373937_0228806 3300036401 Bacteria 1751
79 Ga0373925_0039153 3300037068 Bacteria 3506
80 Ga0395901_0418280 3300038443 Bacteria 1375
81 Ga0439464_0000523 3300042439 Bacteria 7898
82 Ga0451577_0042524 3300042876 Bacteria 4075
83 Ga0451577_0375506 3300042876 Bacteria 1290
84 Ga0453684_0096878 3300044712 Bacteria 3622
85 Ga0453684_0209018 3300044712 Bacteria 2270
86 Ga0495662_0090611 3300046476 Bacteria 1491
87 Ga0495616_0106973 3300046513 Bacteria 1304
88 Ga0495674_0091884 3300047319 Unclassified 2592
89 Ga0495672_0093608 3300047320 Bacteria 1645
90 Ga0495684_0077625 3300047471 Unclassified 2521
91 Ga0501299_001302 3300049522 Bacteria 3171
92 Ga0501032_0064422 3300049569 Bacteria 2453
93 Ga0501033_0000421 3300049570 Bacteria 40599
94 Ga0501033_0004258 3300049570 Bacteria 11506
95 Ga0501034_0013573 3300049571 Bacteria 8384
96 Ga0501043_0056714 3300049579 Bacteria 3077
97 Ga0501046_0026429 3300049580 Bacteria 4741
98 Ga0501047_0053075 3300049581 Bacteria 3918
99 Ga0501070_0360092 3300049586 Bacteria 1180
100 Ga0501071_0027812 3300049587 Bacteria 3981
101 Ga0501075_0075379 3300049591 Bacteria 2551
102 Ga0501217_046469 3300049661 Bacteria 1121
103 Ga0501261_005410 3300049690 Bacteria 1605
104 Ga0501035_0001944 3300049822 Bacteria 20690
105 Ga0501044_0001902 3300049823 Bacteria 24152
106 Ga0501044_0008178 3300049823 Bacteria 11482
107 Ga0501044_0023323 3300049823 Bacteria 6583
108 nmdc:mga0k408_3824_c1 3300050493 Bacteria 7983
109 nmdc:mga07m45_29207_c1 3300050496 Bacteria 3047
110 nmdc:mga05p37_116633_c1 3300050507 Bacteria 3282
111 nmdc:mga05p37_1459_c1 3300050507 Bacteria 27476
112 nmdc:mga05p37_1901_c1 3300050507 Bacteria 24342
113 nmdc:mga05p37_27322_c1 3300050507 Bacteria 6947
114 nmdc:mga05p37_487029_c1 3300050507 Bacteria 1419
115 nmdc:mga09592_14702_c1 3300050508 Bacteria 6387
116 nmdc:mga09592_67366_c1 3300050508 Bacteria 3036
117 nmdc:mga0qj67_14070_c1 3300050509 Bacteria 6041
118 nmdc:mga0qj67_1601_c1 3300050509 Bacteria 15928
119 nmdc:mga0qj67_22790_c1 3300050509 Bacteria 4811
120 nmdc:mga06r32_10058_c1 3300050510 Bacteria 8537
121 nmdc:mga06r32_147182_c1 3300050510 Bacteria 2333
122 nmdc:mga06r32_2279_c1 3300050510 Bacteria 17166
123 nmdc:mga06r32_3285_c1 3300050510 Bacteria 14486
124 nmdc:mga08y16_2665_c1 3300050511 Bacteria 18357
125 nmdc:mga0n895_119083_c1 3300050512 Bacteria 2661
126 nmdc:mga0n895_325532_c1 3300050512 Bacteria 1557
127 nmdc:mga08x19_24675_c1 3300050514 Bacteria 3740
128 Ga0500641_0035645 3300053096 Bacteria 1986
129 Ga0500622_0190609 3300053156 Bacteria 940
130 Ga0590071_001226 3300059421 Bacteria 6942
131 Ga0590074_002425 3300059423 Bacteria 3054
132 Ga0590075_000111 3300059424 Bacteria 21103
133 Ga0590077_002041 3300059426 Bacteria 4432

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053156 Ga0500622_0190609 Ga0500622_0190609_74_874 264
2 3300009147 Ga0114129_10004533 Ga0114129_1000453315 273
3 3300009147 Ga0114129_10605703 Ga0114129_106057032 273
4 3300050510 nmdc:mga06r32_3285_c1 nmdc:mga06r32_3285_c1_3332_4159 273
5 3300036401 Ga0373937_0228806 Ga0373937_0228806_412_1296 290
6 3300046476 Ga0495662_0090611 Ga0495662_0090611_81_965 290
7 3300049570 Ga0501033_0004258 Ga0501033_0004258_42_920 290
8 3300049571 Ga0501034_0013573 Ga0501034_0013573_5910_6788 290
9 3300049823 Ga0501044_0001902 Ga0501044_0001902_14711_15589 290
10 3300005436 Ga0070713_100155631 Ga0070713_1001556312 293
11 3300006042 Ga0075368_10051137 Ga0075368_100511372 293
12 3300006051 Ga0075364_10040912 Ga0075364_100409123 293
13 3300006178 Ga0075367_10151811 Ga0075367_101518112 293
14 3300005844 Ga0068862_100087782 Ga0068862_1000877822 296
15 3300014969 Ga0157376_10056521 Ga0157376_100565213 296
16 3300036401 Ga0373937_0011785 Ga0373937_0011785_3904_4809 296
17 3300047319 Ga0495674_0091884 Ga0495674_0091884_941_1840 296
18 3300047471 Ga0495684_0077625 Ga0495684_0077625_1433_2332 296
19 3300013306 Ga0163162_10481527 Ga0163162_104815272 297
20 3300028556 Ga0265337_1024427 Ga0265337_10244272 297
21 3300049823 Ga0501044_0023323 Ga0501044_0023323_1248_2141 297
22 3300053096 Ga0500641_0035645 Ga0500641_0035645_402_1301 297
23 3300009147 Ga0114129_10243310 Ga0114129_102433102 298
24 3300028556 Ga0265337_1004077 Ga0265337_10040772 298
25 3300028563 Ga0265319_1000418 Ga0265319_100041813 298
26 3300028653 Ga0265323_10009452 Ga0265323_100094521 298
27 3300031235 Ga0265330_10023884 Ga0265330_100238842 298
28 3300031240 Ga0265320_10000281 Ga0265320_1000028114 298
29 3300031250 Ga0265331_10017661 Ga0265331_100176612 298
30 3300031344 Ga0265316_10029106 Ga0265316_100291063 298
31 3300031595 Ga0265313_10000016 Ga0265313_1000001669 298
32 3300044712 Ga0453684_0096878 Ga0453684_0096878_1004_1915 298
33 3300005288 Ga0065714_10128944 Ga0065714_101289442 299
34 3300005344 Ga0070661_100124204 Ga0070661_1001242043 299
35 3300005440 Ga0070705_100036285 Ga0070705_1000362854 299
36 3300005535 Ga0070684_100071350 Ga0070684_1000713502 299
37 3300005536 Ga0070697_100076275 Ga0070697_1000762752 299
38 3300013296 Ga0157374_10126996 Ga0157374_101269962 299
39 3300013306 Ga0163162_10768769 Ga0163162_107687691 299
40 3300014969 Ga0157376_10082619 Ga0157376_100826192 299
41 3300031548 Ga0307408_100018916 Ga0307408_1000189163 299
42 3300031911 Ga0307412_10024431 Ga0307412_100244313 299
43 3300031911 Ga0307412_10268367 Ga0307412_102683671 299
44 3300032002 Ga0307416_100058629 Ga0307416_1000586294 299
45 3300032005 Ga0307411_10034267 Ga0307411_100342672 299
46 3300049522 Ga0501299_001302 Ga0501299_001302_1843_2748 299
47 3300049661 Ga0501217_046469 Ga0501217_046469_193_1098 299
48 3300049690 Ga0501261_005410 Ga0501261_005410_493_1398 299
49 3300050514 nmdc:mga08x19_24675_c1 nmdc:mga08x19_24675_c1_2235_3167 299
50 3300006195 Ga0075366_10161304 Ga0075366_101613042 300
51 3300009093 Ga0105240_10095757 Ga0105240_100957572 300
52 3300009545 Ga0105237_10020003 Ga0105237_100200035 300
53 3300025913 Ga0207695_10044660 Ga0207695_100446602 300
54 3300025914 Ga0207671_10102200 Ga0207671_101022001 300
55 3300035170 Ga0373943_0049044 Ga0373943_0049044_810_1718 300
56 3300035725 Ga0373947_0074233 Ga0373947_0074233_539_1447 300
57 3300037068 Ga0373925_0039153 Ga0373925_0039153_2267_3175 300
58 3300042876 Ga0451577_0042524 Ga0451577_0042524_1261_2166 300
59 3300042876 Ga0451577_0375506 Ga0451577_0375506_208_1119 300
60 3300049587 Ga0501071_0027812 Ga0501071_0027812_2414_3319 300
61 3300049591 Ga0501075_0075379 Ga0501075_0075379_931_1836 300
62 3300006844 Ga0075428_100002259 Ga0075428_1000022594 301
63 3300006846 Ga0075430_100000470 Ga0075430_10000047012 301
64 3300006880 Ga0075429_100002481 Ga0075429_1000024818 301
65 3300009094 Ga0111539_10004040 Ga0111539_100040405 301
66 3300009147 Ga0114129_10001568 Ga0114129_100015684 301
67 3300027907 Ga0207428_10006174 Ga0207428_100061742 301
68 3300031251 Ga0265327_10000127 Ga0265327_1000012728 301
69 3300031548 Ga0307408_100423426 Ga0307408_1004234262 301
70 3300031901 Ga0307406_10135645 Ga0307406_101356453 301
71 3300032002 Ga0307416_100045293 Ga0307416_1000452932 301
72 3300038443 Ga0395901_0418280 Ga0395901_0418280_243_1157 301
73 3300042439 Ga0439464_0000523 Ga0439464_0000523_3049_3960 301
74 3300046513 Ga0495616_0106973 Ga0495616_0106973_249_1289 301
75 3300050507 nmdc:mga05p37_1901_c1 nmdc:mga05p37_1901_c1_19058_19969 301
76 3300050508 nmdc:mga09592_14702_c1 nmdc:mga09592_14702_c1_5235_6146 301
77 3300050509 nmdc:mga0qj67_1601_c1 nmdc:mga0qj67_1601_c1_4570_5481 301
78 3300050510 nmdc:mga06r32_10058_c1 nmdc:mga06r32_10058_c1_799_1710 301
79 3300050511 nmdc:mga08y16_2665_c1 nmdc:mga08y16_2665_c1_8412_9323 301
80 3300059421 Ga0590071_001226 Ga0590071_001226_391_1368 301
81 3300059423 Ga0590074_002425 Ga0590074_002425_836_1813 301
82 3300059424 Ga0590075_000111 Ga0590075_000111_5889_6866 301
83 3300059426 Ga0590077_002041 Ga0590077_002041_2488_3465 301
84 3300006173 Ga0070716_100120910 Ga0070716_1001209102 302
85 3300006178 Ga0075367_10098382 Ga0075367_100983821 302
86 3300006195 Ga0075366_10007115 Ga0075366_100071156 302
87 3300006852 Ga0075433_10063695 Ga0075433_100636952 302
88 3300006871 Ga0075434_100242309 Ga0075434_1002423092 302
89 3300009147 Ga0114129_10024142 Ga0114129_100241424 302
90 3300031251 Ga0265327_10103020 Ga0265327_101030201 302
91 3300050493 nmdc:mga0k408_3824_c1 nmdc:mga0k408_3824_c1_1940_2857 302
92 3300050496 nmdc:mga07m45_29207_c1 nmdc:mga07m45_29207_c1_1466_2383 302
93 3300050507 nmdc:mga05p37_116633_c1 nmdc:mga05p37_116633_c1_538_1452 302
94 3300050512 nmdc:mga0n895_325532_c1 nmdc:mga0n895_325532_c1_92_1009 302
95 3300005329 Ga0070683_100082396 Ga0070683_1000823961 303
96 3300005467 Ga0070706_100244873 Ga0070706_1002448732 303
97 3300005844 Ga0068862_100363365 Ga0068862_1003633652 303
98 3300005985 Ga0081539_10095940 Ga0081539_100959402 303
99 3300006844 Ga0075428_100004146 Ga0075428_10000414611 303
100 3300006844 Ga0075428_100092465 Ga0075428_1000924652 303
101 3300006846 Ga0075430_100015404 Ga0075430_1000154042 303
102 3300006846 Ga0075430_100257899 Ga0075430_1002578992 303
103 3300006847 Ga0075431_100002795 Ga0075431_1000027955 303
104 3300006847 Ga0075431_100020804 Ga0075431_1000208043 303
105 3300006847 Ga0075431_100264846 Ga0075431_1002648462 303
106 3300006871 Ga0075434_100106877 Ga0075434_1001068772 303
107 3300006880 Ga0075429_100071422 Ga0075429_1000714222 303
108 3300009147 Ga0114129_10151490 Ga0114129_101514903 303
109 3300025910 Ga0207684_10166585 Ga0207684_101665852 303
110 3300031548 Ga0307408_100300947 Ga0307408_1003009472 303
111 3300031728 Ga0316578_10212018 Ga0316578_102120182 303
112 3300032133 Ga0316583_10000786 Ga0316583_100007866 303
113 3300047320 Ga0495672_0093608 Ga0495672_0093608_283_1311 303
114 3300049569 Ga0501032_0064422 Ga0501032_0064422_637_1551 303
115 3300049570 Ga0501033_0000421 Ga0501033_0000421_33786_34700 303
116 3300049579 Ga0501043_0056714 Ga0501043_0056714_1371_2285 303
117 3300049580 Ga0501046_0026429 Ga0501046_0026429_3198_4112 303
118 3300049581 Ga0501047_0053075 Ga0501047_0053075_642_1556 303
119 3300049586 Ga0501070_0360092 Ga0501070_0360092_74_988 303
120 3300049822 Ga0501035_0001944 Ga0501035_0001944_658_1572 303
121 3300049823 Ga0501044_0008178 Ga0501044_0008178_3631_4545 303
122 3300050507 nmdc:mga05p37_1459_c1 nmdc:mga05p37_1459_c1_9730_10650 303
123 3300050507 nmdc:mga05p37_27322_c1 nmdc:mga05p37_27322_c1_3492_4427 303
124 3300050507 nmdc:mga05p37_487029_c1 nmdc:mga05p37_487029_c1_276_1196 303
125 3300050508 nmdc:mga09592_67366_c1 nmdc:mga09592_67366_c1_215_1159 303
126 3300050509 nmdc:mga0qj67_14070_c1 nmdc:mga0qj67_14070_c1_3034_3954 303
127 3300050509 nmdc:mga0qj67_22790_c1 nmdc:mga0qj67_22790_c1_2725_3645 303
128 3300050510 nmdc:mga06r32_147182_c1 nmdc:mga06r32_147182_c1_152_1096 303
129 3300050510 nmdc:mga06r32_2279_c1 nmdc:mga06r32_2279_c1_12210_13130 303
130 3300050512 nmdc:mga0n895_119083_c1 nmdc:mga0n895_119083_c1_1334_2266 303
131 3300005535 Ga0070684_100183299 Ga0070684_1001832992 311
132 3300003322 rootL2_10119243 rootL2_101192435 317
133 3300044712 Ga0453684_0209018 Ga0453684_0209018_368_1330 317

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00005

ABC_tran

ABC transporter

42

181

0.94

PF13304

AAA_21

AAA domain, putative AbiEii toxin, Type IV TA system

134

217

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
6xjh-assembly1.cif.gz_D pmtcd abc exporter without the basket domain at c2 symmetry 0.8878 5 227
4rvc-assembly1.cif.gz_A structure of atp binding subunit of abc transporter 0.8863 3 233
7x0q-assembly1.cif.gz_B crystal structure of atpase clo1313_2554 from clostridium thermocellum 0.886 4 234
8eop-assembly1.cif.gz_A cryo-em structure of nanodisc reconstituted human abca7 eq mutant in atp bound closed state 0.8837 2 235
3puy-assembly1.cif.gz_B crystal structure of an outward-facing mbp-maltose transporter complex bound to amp-pnp after crystal soaking of the pretranslocation state 0.8803 1 235
ID Description Score Start End Superfamily
af_O86311_2_235_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9526 2 231 3.40.50.300
af_O53149_2_239_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9367 1 233 3.40.50.300
af_Q2FWW7_2_234_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9328 2 234 3.40.50.300
af_Q2FVS3_1_233_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9267 1 230 3.40.50.300
af_P9WQL7_7_248_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9231 2 231 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A2G2M205-F1-model_v4 Multidrug ABC transporter ATP-binding protein 0.9531 2 233 GO:0005524
GO:0016887
AF-A0A258H969-F1-model_v4 ABC transporter ATP-binding protein 0.95 4 233 GO:0005524
GO:0016887
AF-A0A1C5ZNW8-F1-model_v4 Thiamine import ATP-binding protein ThiQ (EC 3.6.3.-) 0.9416 3 234 GO:0005524
GO:0016887
AF-A0A3D5DMZ3-F1-model_v4 ABC transporter 0.9408 2 212 GO:0005524
GO:0016887
GO:0046677
AF-A0A830FP66-F1-model_v4 Copper ABC transporter ATP-binding protein 0.9358 2 233 GO:0005524
GO:0016887

Feature Viewer

pLDDT pTM Quality
89.42 0.85 High
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Predicted Structure (AlphaFold2)

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