F153570

General Info

Members Datasets Scaffolds Average Seq Length
132 87 131 482

Family's Representative Sequence

Representative Sequence 3300039438|Ga0436360_1098000|Ga0436360_1098000_2779_4329
Length 516
Sequence VVENRAKRGRFAYLTQKMRFGLFEKATQRMTEKDRFAPTLLTDLYQLTMAYGYWKKQMMEHEAIFHLSFRQQPFHGGYAIMCGLSDVIDYLQNFKFQRDDLAYLAELRGKDGLPLFEAKFLDYLHALRFTCNIDAIPEGNVVFPHEPLLRVSGSLLQGQLFETALLNIINFQTLIATKSARICLAAKGNPVMEFGLRRAQGSDGALAASRAAYIGGCFATSNVLAGKVFGIPVRGTHAHSWVMAFPTEYEAFEAYAESMPGDCVFLVDTYDTIEGIRHAVQVGHHLRLVGKELAGIRLDSGDLTFLSIVARDILDHAGFKTTRIVASNDLDEHVIASLKEQGALIDLWGVGTKLVTAYDQPALGGVYKLGAIRSGNGPWQRKLKLSEQAVKVSNPGSLQVRRFEDEKAYAGDMIYDELNGVPAGRTIVDLADVTIKKKIPGAARYRDLLVPIFRRGNLVYERPSIHRLRDLAQSELGRFYAGVKRLLNPHLYPVGLDLDLYQIKSRLIQETRDSIG

Samples

Sample ID Description Type Environment
1 2786546517 Verrucomicrobia bacterium LW23 Isolate Rhizoplane
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
6 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
9 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
16 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
19 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
22 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
25 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
30 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
31 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
32 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
33 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
34 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
35 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
36 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
37 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
47 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
48 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
49 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
50 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
51 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
52 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
53 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
54 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
55 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
56 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
57 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
58 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
59 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
60 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
61 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
62 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
63 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
64 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
65 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
66 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
67 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
68 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
69 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
70 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
71 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
77 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
78 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
79 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
80 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
81 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
82 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
83 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
84 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
85 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
86 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
87 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.24
Metatranscriptomes 0
Isolates 0.76

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.3
Nodule 0
Rhizoplane 0.76
Rhizosphere 85.61
Stem 0
Stem Tuber 0
Unclassified 8.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10044512 3300003320 Bacteria 30446
2 rootH2_10072321 3300003320 Bacteria 15505
3 rootL2_10158445 3300003322 Bacteria 5181
4 Ga0068869_100090394 3300005334 Bacteria 2301
5 Ga0070687_100008755 3300005343 Bacteria 4300
6 Ga0070709_10000025 3300005434 Bacteria 129264
7 Ga0070709_10010523 3300005434 Bacteria 5127
8 Ga0070709_10047532 3300005434 Bacteria 2674
9 Ga0070713_100010181 3300005436 Bacteria 6783
10 Ga0070701_10003481 3300005438 Bacteria 6237
11 Ga0070694_100015373 3300005444 Bacteria 4807
12 Ga0070708_100073543 3300005445 Bacteria 3081
13 Ga0070706_100093785 3300005467 Unclassified 2785
14 Ga0070698_100063269 3300005471 Bacteria 3731
15 Ga0070699_100145281 3300005518 Bacteria 2096
16 Ga0070697_100030725 3300005536 Bacteria 4316
17 Ga0070697_100191435 3300005536 Unclassified 1736
18 Ga0070686_100008516 3300005544 Bacteria 5746
19 Ga0070695_100018997 3300005545 Unclassified 4179
20 Ga0068863_100003375 3300005841 Bacteria 15757
21 Ga0070717_10115989 3300006028 Bacteria 2289
22 Ga0075364_10007715 3300006051 Bacteria 6404
23 Ga0075428_100021792 3300006844 Bacteria 7095
24 Ga0075433_10009065 3300006852 Bacteria 7948
25 Ga0075433_10010646 3300006852 Bacteria 7395
26 Ga0075434_100000121 3300006871 Bacteria 45784
27 Ga0075429_100005942 3300006880 Bacteria 10535
28 Ga0075436_100005070 3300006914 Bacteria 9065
29 Ga0075435_100000124 3300007076 Bacteria 43923
30 Ga0105240_10000536 3300009093 Bacteria 70093
31 Ga0105240_10051839 3300009093 Bacteria 5161
32 Ga0105247_10079556 3300009101 Unclassified 2063
33 Ga0114129_10001190 3300009147 Bacteria 34533
34 Ga0114129_10133278 3300009147 Bacteria 3411
35 Ga0105239_10163513 3300010375 Bacteria 2488
36 Ga0157370_10017908 3300013104 Bacteria 7134
37 Ga0157372_10142556 3300013307 Bacteria 2762
38 Ga0157372_10312722 3300013307 Unclassified 1828
39 Ga0157377_10000025 3300014745 Bacteria 140744
40 Ga0213873_10000002 3300021358 Bacteria 1164195
41 Ga0213872_10011289 3300021361 Unclassified 4230
42 Ga0213872_10014469 3300021361 Bacteria 3681
43 Ga0213872_10039572 3300021361 Bacteria 2151
44 Ga0213872_10054912 3300021361 Unclassified 1806
45 Ga0213874_10008273 3300021377 Bacteria 2532
46 Ga0213876_10000001 3300021384 Bacteria 1186326
47 Ga0207699_10000036 3300025906 Bacteria 129236
48 Ga0207699_10095242 3300025906 Bacteria 1877
49 Ga0207684_10000669 3300025910 Bacteria 40655
50 Ga0207695_10000124 3300025913 Bacteria 230517
51 Ga0207695_10001054 3300025913 Bacteria 48342
52 Ga0207662_10092951 3300025918 Bacteria 1858
53 Ga0207650_10091693 3300025925 Bacteria 2322
54 Ga0207689_10077185 3300025942 Bacteria 2739
55 Ga0207667_10077844 3300025949 Bacteria 3438
56 Ga0207641_10002506 3300026088 Bacteria 16941
57 Ga0207674_10120452 3300026116 Bacteria 2592
58 Ga0265318_10018581 3300028577 Bacteria 2833
59 Ga0265338_10016566 3300028800 Bacteria 8004
60 Ga0265332_10013028 3300031238 Bacteria 3687
61 Ga0265325_10000065 3300031241 Bacteria 73329
62 Ga0265339_10002195 3300031249 Bacteria 14164
63 Ga0265331_10000603 3300031250 Bacteria 31739
64 Ga0265313_10000231 3300031595 Bacteria 60332
65 Ga0265314_10000053 3300031711 Bacteria 186080
66 Ga0265342_10008179 3300031712 Bacteria 7544
67 Ga0316577_10025122 3300031733 Bacteria 3314
68 Ga0316582_0003018 3300036647 Bacteria 8119
69 Ga0316584_0000932 3300036712 Bacteria 16644
70 Ga0395905_0118335 3300037471 Bacteria 2490
71 Ga0436364_0397475 3300037853 Bacteria 5012
72 Ga0395901_0058525 3300038443 Bacteria 4008
73 Ga0436365_0712819 3300039437 Bacteria 66345
74 Ga0436365_0774883 3300039437 Bacteria 390569
75 Ga0436365_1098639 3300039437 Bacteria 2417
76 Ga0436360_0614620 3300039438 Bacteria 2844
77 Ga0436360_1098000 3300039438 Bacteria 6264
78 Ga0436361_0314526 3300039447 Bacteria 29245
79 Ga0436361_0436575 3300039447 Bacteria 3515
80 Ga0436361_0536065 3300039447 Bacteria 4626
81 Ga0436361_0812375 3300039447 Bacteria 4152
82 Ga0436363_0733654 3300039450 Bacteria 2747
83 Ga0436362_0059817 3300039453 Bacteria 1878
84 Ga0436362_0660519 3300039453 Bacteria 832172
85 Ga0451577_0000088 3300042876 Bacteria 206788
86 Ga0451577_0001375 3300042876 Bacteria 32691
87 Ga0451577_0022347 3300042876 Bacteria 5774
88 Ga0451577_0036263 3300042876 Bacteria 4439
89 Ga0451577_0073982 3300042876 Bacteria 3039
90 Ga0451577_0114653 3300042876 Bacteria 2412
91 Ga0453683_0000016 3300044673 Bacteria 310845
92 Ga0453683_0000184 3300044673 Bacteria 86818
93 Ga0453683_0001986 3300044673 Bacteria 16570
94 Ga0453683_0002983 3300044673 Bacteria 12686
95 Ga0453683_0003117 3300044673 Bacteria 12376
96 Ga0453683_0011169 3300044673 Bacteria 5936
97 Ga0453683_0030096 3300044673 Bacteria 3433
98 Ga0453683_0081320 3300044673 Bacteria 2029
99 Ga0453683_0126664 3300044673 Bacteria 1608
100 Ga0453684_0000309 3300044712 Bacteria 207063
101 Ga0453684_0002339 3300044712 Bacteria 46367
102 Ga0453684_0026012 3300044712 Bacteria 8473
103 Ga0453684_0067380 3300044712 Bacteria 4552
104 Ga0453684_0073160 3300044712 Bacteria 4323
105 Ga0453684_0102177 3300044712 Unclassified 3505
106 Ga0451576_0000011 3300045051 Bacteria 676436
107 Ga0451576_0005520 3300045051 Bacteria 15796
108 Ga0451576_0007477 3300045051 Bacteria 13038
109 Ga0451576_0009105 3300045051 Bacteria 11549
110 Ga0451576_0035068 3300045051 Bacteria 5324
111 Ga0451576_0081819 3300045051 Bacteria 3358
112 Ga0496116_0010144 3300048919 Bacteria 7932
113 Ga0501034_0000234 3300049571 Bacteria 103136
114 Ga0501037_0003211 3300049573 Bacteria 11846
115 Ga0501038_0000165 3300049574 Bacteria 56067
116 Ga0501042_0133324 3300049578 Bacteria 1791
117 Ga0501048_0048612 3300049582 Bacteria 3025
118 Ga0501081_0115845 3300049743 Bacteria 1905
119 Ga0501044_0023078 3300049823 Bacteria 6623
120 nmdc:mga00v17_94_c1 3300050491 Bacteria 52910
121 nmdc:mga00v17_98751_c1 3300050491 Unclassified 1841
122 nmdc:mga0yw44_48_c1 3300050492 Bacteria 40823
123 nmdc:mga0k408_44831_c1 3300050493 Unclassified 2551
124 nmdc:mga05p37_11163_c1 3300050507 Bacteria 10676
125 nmdc:mga05p37_354365_c1 3300050507 Bacteria 1727
126 nmdc:mga09592_3514_c1 3300050508 Bacteria 12666
127 nmdc:mga0rr50_388_c1 3300050513 Bacteria 23983
128 nmdc:mga08x19_14891_c1 3300050514 Bacteria 4724
129 nmdc:mga0a205_8_c1 3300050515 Bacteria 127532
130 Ga0500555_000093 3300053103 Bacteria 42057
131 Ga0500559_0001423 3300053136 Bacteria 13576

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049578 Ga0501042_0133324 Ga0501042_0133324_434_1687 416
2 3300014745 Ga0157377_10000025 Ga0157377_100000259 420
3 3300005545 Ga0070695_100018997 Ga0070695_1000189973 433
4 3300005334 Ga0068869_100090394 Ga0068869_1000903941 434
5 3300025942 Ga0207689_10077185 Ga0207689_100771851 434
6 3300026116 Ga0207674_10120452 Ga0207674_101204523 447
7 3300005471 Ga0070698_100063269 Ga0070698_1000632692 451
8 3300050491 nmdc:mga00v17_98751_c1 nmdc:mga00v17_98751_c1_429_1823 453
9 3300048919 Ga0496116_0010144 Ga0496116_0010144_1752_3239 457
10 3300005434 Ga0070709_10047532 Ga0070709_100475322 461
11 3300006852 Ga0075433_10009065 Ga0075433_100090655 461
12 3300006852 Ga0075433_10010646 Ga0075433_100106464 461
13 3300006871 Ga0075434_100000121 Ga0075434_10000012117 461
14 3300006914 Ga0075436_100005070 Ga0075436_1000050705 461
15 3300007076 Ga0075435_100000124 Ga0075435_10000012422 461
16 3300009147 Ga0114129_10133278 Ga0114129_101332782 461
17 3300025906 Ga0207699_10095242 Ga0207699_100952422 461
18 3300050507 nmdc:mga05p37_354365_c1 nmdc:mga05p37_354365_c1_100_1521 461
19 3300050513 nmdc:mga0rr50_388_c1 nmdc:mga0rr50_388_c1_10758_12179 461
20 3300050514 nmdc:mga08x19_14891_c1 nmdc:mga08x19_14891_c1_1217_2638 461
21 3300050515 nmdc:mga0a205_8_c1 nmdc:mga0a205_8_c1_51088_52509 461
22 3300021358 Ga0213873_10000002 Ga0213873_10000002713 464
23 3300021384 Ga0213876_10000001 Ga0213876_10000001796 464
24 3300039437 Ga0436365_0774883 Ga0436365_0774883_268123_269568 464
25 3300039453 Ga0436362_0660519 Ga0436362_0660519_213713_215158 464
26 3300049571 Ga0501034_0000234 Ga0501034_0000234_61948_63417 467
27 3300049573 Ga0501037_0003211 Ga0501037_0003211_9045_10514 467
28 3300050493 nmdc:mga0k408_44831_c1 nmdc:mga0k408_44831_c1_520_1950 467
29 3300039438 Ga0436360_0614620 Ga0436360_0614620_1082_2503 468
30 3300006051 Ga0075364_10007715 Ga0075364_100077156 470
31 3300009093 Ga0105240_10000536 Ga0105240_1000053633 470
32 3300025913 Ga0207695_10001054 Ga0207695_1000105416 470
33 3300042876 Ga0451577_0114653 Ga0451577_0114653_52_1476 470
34 3300050491 nmdc:mga00v17_94_c1 nmdc:mga00v17_94_c1_821_2311 470
35 3300050492 nmdc:mga0yw44_48_c1 nmdc:mga0yw44_48_c1_20848_22338 470
36 3300042876 Ga0451577_0073982 Ga0451577_0073982_1169_2647 471
37 3300044673 Ga0453683_0000184 Ga0453683_0000184_12040_13467 471
38 3300044673 Ga0453683_0030096 Ga0453683_0030096_1485_2963 471
39 3300044712 Ga0453684_0067380 Ga0453684_0067380_2673_4100 471
40 3300042876 Ga0451577_0001375 Ga0451577_0001375_26672_28123 472
41 3300028577 Ga0265318_10018581 Ga0265318_100185812 473
42 3300044673 Ga0453683_0000016 Ga0453683_0000016_263983_265422 473
43 3300044712 Ga0453684_0102177 Ga0453684_0102177_1539_2978 473
44 3300045051 Ga0451576_0000011 Ga0451576_0000011_634647_636086 473
45 3300005434 Ga0070709_10000025 Ga0070709_10000025100 475
46 3300025906 Ga0207699_10000036 Ga0207699_10000036101 475
47 3300010375 Ga0105239_10163513 Ga0105239_101635132 477
48 3300039437 Ga0436365_1098639 Ga0436365_1098639_580_2013 477
49 3300049574 Ga0501038_0000165 Ga0501038_0000165_40931_42400 479
50 3300049823 Ga0501044_0023078 Ga0501044_0023078_4951_6483 479
51 3300053103 Ga0500555_000093 Ga0500555_000093_40325_41776 481
52 3300053136 Ga0500559_0001423 Ga0500559_0001423_11459_12922 481
53 3300003322 rootL2_10158445 rootL2_101584452 483
54 3300037471 Ga0395905_0118335 Ga0395905_0118335_147_1613 484
55 3300013307 Ga0157372_10312722 Ga0157372_103127221 485
56 3300031733 Ga0316577_10025122 Ga0316577_100251222 485
57 3300036647 Ga0316582_0003018 Ga0316582_0003018_5875_7341 485
58 3300036712 Ga0316584_0000932 Ga0316584_0000932_9944_11410 485
59 3300005434 Ga0070709_10010523 Ga0070709_100105233 486
60 3300005436 Ga0070713_100010181 Ga0070713_1000101814 486
61 3300006844 Ga0075428_100021792 Ga0075428_1000217924 486
62 3300006880 Ga0075429_100005942 Ga0075429_1000059422 486
63 3300009093 Ga0105240_10051839 Ga0105240_100518393 486
64 3300009147 Ga0114129_10001190 Ga0114129_1000119015 486
65 3300013104 Ga0157370_10017908 Ga0157370_100179082 486
66 3300013307 Ga0157372_10142556 Ga0157372_101425561 486
67 3300025913 Ga0207695_10000124 Ga0207695_1000012492 486
68 3300025949 Ga0207667_10077844 Ga0207667_100778444 486
69 3300028800 Ga0265338_10016566 Ga0265338_100165669 486
70 3300031238 Ga0265332_10013028 Ga0265332_100130282 486
71 3300031241 Ga0265325_10000065 Ga0265325_1000006550 486
72 3300031249 Ga0265339_10002195 Ga0265339_100021953 486
73 3300031250 Ga0265331_10000603 Ga0265331_1000060316 486
74 3300031595 Ga0265313_10000231 Ga0265313_100002312 486
75 3300031711 Ga0265314_10000053 Ga0265314_10000053115 486
76 3300031712 Ga0265342_10008179 Ga0265342_100081793 486
77 3300038443 Ga0395901_0058525 Ga0395901_0058525_1077_2549 486
78 3300039437 Ga0436365_0712819 Ga0436365_0712819_35680_37155 486
79 3300039447 Ga0436361_0536065 Ga0436361_0536065_695_2170 486
80 3300042876 Ga0451577_0022347 Ga0451577_0022347_4001_5491 486
81 3300044673 Ga0453683_0081320 Ga0453683_0081320_81_1553 486
82 3300044673 Ga0453683_0126664 Ga0453683_0126664_72_1544 486
83 3300044712 Ga0453684_0073160 Ga0453684_0073160_990_2474 486
84 3300045051 Ga0451576_0005520 Ga0451576_0005520_12290_13762 486
85 3300045051 Ga0451576_0081819 Ga0451576_0081819_171_1661 486
86 3300050507 nmdc:mga05p37_11163_c1 nmdc:mga05p37_11163_c1_6493_7953 486
87 3300050508 nmdc:mga09592_3514_c1 nmdc:mga09592_3514_c1_7691_9151 486
88 3300003320 rootH2_10044512 rootH2_100445123 487
89 3300003320 rootH2_10072321 rootH2_100723213 487
90 3300005343 Ga0070687_100008755 Ga0070687_1000087553 487
91 3300005438 Ga0070701_10003481 Ga0070701_100034814 487
92 3300005444 Ga0070694_100015373 Ga0070694_1000153732 487
93 3300005445 Ga0070708_100073543 Ga0070708_1000735432 487
94 3300005467 Ga0070706_100093785 Ga0070706_1000937853 487
95 3300005518 Ga0070699_100145281 Ga0070699_1001452811 487
96 3300005536 Ga0070697_100030725 Ga0070697_1000307252 487
97 3300005536 Ga0070697_100191435 Ga0070697_1001914351 487
98 3300005544 Ga0070686_100008516 Ga0070686_1000085164 487
99 3300005841 Ga0068863_100003375 Ga0068863_1000033755 487
100 3300006028 Ga0070717_10115989 Ga0070717_101159892 487
101 3300009101 Ga0105247_10079556 Ga0105247_100795562 487
102 3300021361 Ga0213872_10011289 Ga0213872_100112894 487
103 3300021361 Ga0213872_10014469 Ga0213872_100144691 487
104 3300021361 Ga0213872_10039572 Ga0213872_100395721 487
105 3300021361 Ga0213872_10054912 Ga0213872_100549122 487
106 3300021377 Ga0213874_10008273 Ga0213874_100082733 487
107 3300025910 Ga0207684_10000669 Ga0207684_1000066930 487
108 3300025918 Ga0207662_10092951 Ga0207662_100929512 487
109 3300025925 Ga0207650_10091693 Ga0207650_100916932 487
110 3300026088 Ga0207641_10002506 Ga0207641_100025064 487
111 3300037853 Ga0436364_0397475 Ga0436364_0397475_822_2303 487
112 3300039438 Ga0436360_1098000 Ga0436360_1098000_2779_4329 487
113 3300039447 Ga0436361_0314526 Ga0436361_0314526_5133_6605 487
114 3300039447 Ga0436361_0436575 Ga0436361_0436575_988_2460 487
115 3300039447 Ga0436361_0812375 Ga0436361_0812375_417_1895 487
116 3300039450 Ga0436363_0733654 Ga0436363_0733654_424_1905 487
117 3300039453 Ga0436362_0059817 Ga0436362_0059817_188_1660 487
118 3300042876 Ga0451577_0000088 Ga0451577_0000088_2490_3965 487
119 3300042876 Ga0451577_0036263 Ga0451577_0036263_1794_3287 487
120 3300044673 Ga0453683_0001986 Ga0453683_0001986_12653_14128 487
121 3300044673 Ga0453683_0002983 Ga0453683_0002983_8832_10310 487
122 3300044673 Ga0453683_0003117 Ga0453683_0003117_6448_7923 487
123 3300044673 Ga0453683_0011169 Ga0453683_0011169_1799_3274 487
124 3300044712 Ga0453684_0000309 Ga0453684_0000309_202822_204297 487
125 3300044712 Ga0453684_0002339 Ga0453684_0002339_31758_33239 487
126 3300044712 Ga0453684_0026012 Ga0453684_0026012_5188_6663 487
127 3300045051 Ga0451576_0007477 Ga0451576_0007477_608_2086 487
128 3300045051 Ga0451576_0009105 Ga0451576_0009105_4472_5947 487
129 3300045051 Ga0451576_0035068 Ga0451576_0035068_2516_3991 487
130 3300049582 Ga0501048_0048612 Ga0501048_0048612_1519_2994 487
131 3300049743 Ga0501081_0115845 Ga0501081_0115845_60_1535 487
132 iso_pu_bacteria 2786546517 2787438133 487

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17767

NAPRTase_N

Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain

40

170

0.96

PF17956

NAPRTase_C

Nicotinate phosphoribosyltransferase C-terminal domain

399

504

0.76

PF04095

NAPRTase

Nicotinate phosphoribosyltransferase (NAPRTase) family

190

376

0.69

Structural Annotation

Top 5 Hits

ID Description Score Start End
4mzy-assembly1.cif.gz_A crystal structure of enterococcus faecalis nicotinate phosphoribosyltransferase with malonate and phosphate bound 0.9571 7 484
4mzy-assembly1.cif.gz_A crystal structure of enterococcus faecalis nicotinate phosphoribosyltransferase with malonate and phosphate bound 0.934 7 484
2i14-assembly1.cif.gz_A crystal structure of nicotinate-nucleotide pyrophosphorylase from pyrococcus furiosus 0.8749 10 449
4yub-assembly1.cif.gz_A crystal structure of human nicotinic acid phosphoribosyltransferase 0.8706 13 478
2i1o-assembly1.cif.gz_A crystal structure of a nicotinate phosphoribosyltransferase from thermoplasma acidophilum 0.8537 10 449
ID Description Score Start End Superfamily
af_Q851M0_172_232_3.20.140.10 Alpha Beta;Alpha-Beta Barrel;nicotinate phosphoribosyltransferase;nicotinate phosphoribosyltransferase 0.9986 160 216 3.20.140.10
4mzyA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9712 158 325 3.20.20.70
af_P9WJI7_150_316_3.20.140.10 Alpha Beta;Alpha-Beta Barrel;nicotinate phosphoribosyltransferase;nicotinate phosphoribosyltransferase 0.9679 159 325 3.20.140.10
af_Q95XX1_282_400_3.20.140.10 Alpha Beta;Alpha-Beta Barrel;nicotinate phosphoribosyltransferase;nicotinate phosphoribosyltransferase 0.9654 219 325 3.20.140.10
4mzyA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9599 158 325 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A533RER0-F1-model_v4 Nicotinate phosphoribosyltransferase (EC 6.3.4.21) 0.9906 8 327 GO:0004516
GO:0005829
GO:0016757
GO:0034355
AF-A0A7C4QWL6-F1-model_v4 Nicotinate phosphoribosyltransferase (EC 6.3.4.21) 0.99 10 487 GO:0004516
GO:0005829
GO:0016757
GO:0034355
AF-A0A381SL01-F1-model_v4 nicotinate phosphoribosyltransferase (EC 6.3.4.21) 0.9883 12 484 GO:0004516
GO:0005829
GO:0034355
AF-A0A7J7AF08-F1-model_v4 deleted 0.9878 20 482
AF-A0A3C1AWT9-F1-model_v4 deleted 0.9878 9 335

Feature Viewer

pLDDT pTM Quality
94.32 0.93 High
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Predicted Structure (AlphaFold2)

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