F151401

General Info

Members Datasets Scaffolds Average Seq Length
132 104 127 448

Family's Representative Sequence

Representative Sequence 3300005295|Ga0065707_10088261|Ga0065707_100882613
Length 500
Sequence MRTHYYSRFCKIVFAILVALPLTTMAQLDKVHYMRPSYWRPYDKTGINVFETTKAPDSIPFDGLRIRFGAGFTQQFQDLTHENTKAINTQSPPADGSKAAVTTNHLYPIEPGFMTAQANLYTDVQLADGISLNLTTYLSARHHNEAWVKGGYLQFDKLPFKGQFWTNLMKITTIKIGHMEINYGDAHFRRSDGGHTFYNPFMESYIMDAYTTEIGGEVYLKKNSLFGMIGLTSGMIKGNIDSAVASPVDANTKRSPSIYLKGGFDKQLNDAVRVRVSGSYYHNGSSAGSGLTLYGGDRTGSNYQNVMELWKTPVYNAEKSNASTQTKDSIVQVYDATTQASTATAFSGRFNPGFSKKVDAVMLNGFLKFKGLELFGTYETAQGRSKAETDERTANQIAIDGVYRFGKNENLFIGARYNTVTAKLANTSAYLYTSDVKIDRTSFAAGWFITRNVMLKGEYVIQNYNNFEKTTKPNGSPYAGADYRSGGKFSGYVIEAAVAF

Samples

Sample ID Description Type Environment
1 2738541278 Niastella sp. CF465 Isolate Unclassified
2 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
3 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
4 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
5 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
6 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
10 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
11 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
12 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
13 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
14 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
15 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
16 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
17 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
18 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
19 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
20 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
23 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
32 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
35 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
39 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
44 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
45 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
46 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
47 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
48 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
69 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
70 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
71 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
72 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
73 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
74 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
75 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
76 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
77 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
78 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
79 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
80 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
81 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
82 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
83 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
84 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
85 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
86 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
87 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
88 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
89 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
90 3300049163 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_B_7_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
91 3300049551 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
94 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
95 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
96 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
99 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
100 3300053089 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 endosphere Metagenome Endosphere
101 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
102 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
103 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
104 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.18
Metatranscriptomes 3.03
Isolates 3.79

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.09
Nodule 0
Rhizoplane 0
Rhizosphere 75.76
Stem 0
Stem Tuber 0
Unclassified 15.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10002806 3300003316 Bacteria 15576
2 rootH2_10031892 3300003320 Bacteria 18542
3 rootH2_10045602 3300003320 Bacteria 22112
4 rootL2_10294851 3300003322 Bacteria 3982
5 rootL2_10365057 3300003322 Bacteria 1770
6 Ga0055535_1002602 3300003761 Bacteria 6057
7 Ga0055542_1003942 3300003762 Bacteria 3802
8 Ga0065165_1024846 3300005262 Bacteria 2004
9 Ga0065714_10082170 3300005288 Bacteria 2325
10 Ga0065707_10088261 3300005295 Bacteria 4716
11 Ga0070683_100002171 3300005329 Bacteria 15517
12 Ga0070683_100033916 3300005329 Bacteria 4659
13 Ga0070690_100001350 3300005330 Bacteria 12766
14 Ga0070670_100021500 3300005331 Bacteria 5549
15 Ga0070666_10036229 3300005335 Bacteria 3273
16 Ga0070689_100206988 3300005340 Bacteria 1604
17 Ga0070675_100225329 3300005354 Bacteria 1634
18 Ga0070673_100148738 3300005364 Bacteria 1982
19 Ga0070681_10141538 3300005458 Bacteria 2335
20 Ga0068867_100149811 3300005459 Bacteria 1831
21 Ga0070684_100058483 3300005535 Unclassified 3369
22 Ga0070684_100072128 3300005535 Bacteria 3039
23 Ga0068855_100000463 3300005563 Bacteria 50000
24 Ga0068855_100008378 3300005563 Bacteria 12502
25 Ga0068855_100042055 3300005563 Bacteria 5415
26 Ga0068852_100083165 3300005616 Unclassified 2846
27 Ga0068852_100087561 3300005616 Unclassified 2779
28 Ga0068858_100136515 3300005842 Bacteria 2301
29 Ga0097621_100149181 3300006237 Bacteria 2004
30 Ga0068871_100051379 3300006358 Bacteria 3337
31 Ga0105240_10002010 3300009093 Bacteria 33532
32 Ga0105240_10039725 3300009093 Bacteria 6023
33 Ga0105240_10150241 3300009093 Bacteria 2775
34 Ga0114129_10000267 3300009147 Bacteria 59005
35 Ga0105242_10017601 3300009176 Bacteria 5574
36 Ga0105237_10006548 3300009545 Bacteria 12885
37 Ga0105237_10032111 3300009545 Bacteria 5317
38 Ga0105237_10040154 3300009545 Bacteria 4720
39 Ga0105239_10016576 3300010375 Bacteria 8145
40 Ga0105239_10073172 3300010375 Unclassified 3768
41 Ga0105239_10116813 3300010375 Bacteria 2961
42 Ga0157373_10133734 3300013100 Unclassified 1743
43 Ga0157371_10014385 3300013102 Bacteria 5972
44 Ga0157370_10217979 3300013104 Bacteria 1768
45 Ga0157369_10269649 3300013105 Unclassified 1774
46 Ga0157374_10000982 3300013296 Bacteria 24733
47 Ga0157374_10035043 3300013296 Bacteria 4590
48 Ga0157378_10016092 3300013297 Bacteria 6549
49 Ga0163162_10010781 3300013306 Bacteria 8892
50 Ga0157372_10034385 3300013307 Bacteria 5571
51 Ga0157372_10173337 3300013307 Bacteria 2496
52 Ga0157372_10205532 3300013307 Bacteria 2282
53 Ga0157375_10002038 3300013308 Bacteria 17420
54 Ga0163163_10027670 3300014325 Bacteria 5435
55 Ga0157376_10002592 3300014969 Bacteria 12272
56 Ga0182005_1000087 3300015265 Bacteria 70160
57 Ga0163161_10005937 3300017792 Bacteria 8463
58 Ga0209436_106078 3300025208 Bacteria 2690
59 Ga0209258_100160 3300025242 Bacteria 154101
60 Ga0209148_1000153 3300025254 Bacteria 147028
61 Ga0207642_10057239 3300025899 Bacteria 1792
62 Ga0207707_10157035 3300025912 Bacteria 1989
63 Ga0207695_10000071 3300025913 Bacteria 315568
64 Ga0207695_10174561 3300025913 Bacteria 2072
65 Ga0207671_10024058 3300025914 Bacteria 4584
66 Ga0207671_10044528 3300025914 Bacteria 3282
67 Ga0207649_10093983 3300025920 Bacteria 1969
68 Ga0207650_10017308 3300025925 Bacteria 5044
69 Ga0207706_10076542 3300025933 Bacteria 2943
70 Ga0207686_10095244 3300025934 Bacteria 1975
71 Ga0207689_10014515 3300025942 Bacteria 6700
72 Ga0207661_10016413 3300025944 Bacteria 5463
73 Ga0207661_10196023 3300025944 Bacteria 1773
74 Ga0207667_10000209 3300025949 Bacteria 83277
75 Ga0207667_10004997 3300025949 Bacteria 16203
76 Ga0207667_10009630 3300025949 Bacteria 11364
77 Ga0207651_10203929 3300025960 Bacteria 1587
78 Ga0207703_10249242 3300026035 Bacteria 1600
79 Ga0207702_10020489 3300026078 Bacteria 5474
80 Ga0207648_10063676 3300026089 Bacteria 3214
81 Ga0207674_10013465 3300026116 Bacteria 9073
82 Ga0207698_10077868 3300026142 Bacteria 2660
83 Ga0268264_10026241 3300028381 Bacteria 4759
84 Ga0307517_10039647 3300028786 Bacteria 5164
85 Ga0307515_10000001 3300028794 Bacteria 4259510
86 Ga0307515_10000300 3300028794 Bacteria 122040
87 Ga0307515_10042641 3300028794 Bacteria 7089
88 Ga0307511_10005409 3300030521 Bacteria 12994
89 Ga0265327_10006116 3300031251 Bacteria 9746
90 Ga0307509_10143219 3300031507 Bacteria 2321
91 Ga0307508_10002678 3300031616 Bacteria 18650
92 Ga0307516_10002288 3300031730 Bacteria 25839
93 Ga0307516_10050403 3300031730 Bacteria 4085
94 Ga0307409_100199146 3300031995 Bacteria 1790
95 Ga0307416_100185288 3300032002 Bacteria 1956
96 Ga0307414_10000967 3300032004 Bacteria 14631
97 Ga0307415_100063501 3300032126 Unclassified 2566
98 Ga0395905_0002413 3300037471 Bacteria 20745
99 Ga0439436_0002702 3300041404 Bacteria 5357
100 Ga0439449_0002732 3300042007 Bacteria 6867
101 Ga0439457_001199 3300042014 Bacteria 7810
102 Ga0451577_0098173 3300042876 Bacteria 2616
103 Ga0453684_0029189 3300044712 Bacteria 7844
104 Ga0453684_0363039 3300044712 Bacteria 1630
105 Ga0466957_0000009 3300044842 Bacteria 76227
106 Ga0495643_0004352 3300046522 Bacteria 9930
107 Ga0496121_0000007 3300048924 Bacteria 942516
108 Ga0501310_002378 3300049130 Bacteria 1781
109 Ga0501305_003442 3300049161 Bacteria 1792
110 Ga0501342_00061 3300049163 Bacteria 2254
111 Ga0501335_000404 3300049551 Bacteria 2694
112 Ga0501047_0005603 3300049581 Bacteria 11824
113 Ga0501047_0125927 3300049581 Bacteria 2442
114 Ga0501202_007325 3300049652 Bacteria 1993
115 Ga0501223_000691 3300049663 Bacteria 8052
116 Ga0501223_013141 3300049663 Bacteria 1650
117 Ga0501221_002706 3300049704 Bacteria 2914
118 Ga0501035_0106202 3300049822 Bacteria 2462
119 Ga0501044_0016671 3300049823 Bacteria 7889
120 Ga0501044_0161717 3300049823 Bacteria 2215
121 nmdc:mga05p37_1247_c1 3300050507 Bacteria 11142
122 Ga0500578_0000307 3300053086 Bacteria 60033
123 Ga0500581_059661 3300053089 Bacteria 1934
124 Ga0500646_0015259 3300053090 Unclassified 2000
125 Ga0500583_0000290 3300053092 Bacteria 17375
126 Ga0500589_027667 3300053147 Unclassified 2634
127 Ga0500622_0009940 3300053156 Bacteria 5247

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049823 Ga0501044_0161717 Ga0501044_0161717_50_1120 355
2 3300025920 Ga0207649_10093983 Ga0207649_100939832 387
3 3300013100 Ga0157373_10133734 Ga0157373_101337342 406
4 3300049663 Ga0501223_000691 Ga0501223_000691_628_1944 413
5 3300028794 Ga0307515_10042641 Ga0307515_100426413 414
6 3300005262 Ga0065165_1024846 Ga0065165_10248462 415
7 3300015265 Ga0182005_1000087 Ga0182005_10000879 415
8 3300025208 Ga0209436_106078 Ga0209436_1060781 415
9 3300031730 Ga0307516_10050403 Ga0307516_100504033 416
10 3300048924 Ga0496121_0000007 Ga0496121_0000007_556121_557512 417
11 3300044712 Ga0453684_0363039 Ga0453684_0363039_324_1601 418
12 3300046522 Ga0495643_0004352 Ga0495643_0004352_132_1604 419
13 3300053156 Ga0500622_0009940 Ga0500622_0009940_3073_4473 419
14 3300053090 Ga0500646_0015259 Ga0500646_0015259_172_1434 420
15 3300053147 Ga0500589_027667 Ga0500589_027667_1237_2499 420
16 iso_pu_bacteria 2839989709 2839991760 426
17 3300003761 Ga0055535_1002602 Ga0055535_10026027 427
18 3300003762 Ga0055542_1003942 Ga0055542_10039421 427
19 3300025242 Ga0209258_100160 Ga0209258_10016074 427
20 3300025254 Ga0209148_1000153 Ga0209148_100015352 427
21 3300053089 Ga0500581_059661 Ga0500581_059661_253_1647 427
22 3300032002 Ga0307416_100185288 Ga0307416_1001852882 428
23 3300005354 Ga0070675_100225329 Ga0070675_1002253292 431
24 3300005364 Ga0070673_100148738 Ga0070673_1001487382 431
25 3300005535 Ga0070684_100072128 Ga0070684_1000721282 431
26 3300005616 Ga0068852_100083165 Ga0068852_1000831653 431
27 3300013104 Ga0157370_10217979 Ga0157370_102179792 431
28 3300014325 Ga0163163_10027670 Ga0163163_100276705 431
29 3300025960 Ga0207651_10203929 Ga0207651_102039291 431
30 3300028794 Ga0307515_10000300 Ga0307515_1000030070 431
31 iso_pu_bacteria 2738541278 2738725272 432
32 iso_pu_bacteria 2818991442 2819575601 432
33 3300049551 Ga0501335_000404 Ga0501335_000404_678_1988 433
34 3300003320 rootH2_10031892 rootH2_1003189210 435
35 3300005329 Ga0070683_100002171 Ga0070683_10000217113 435
36 3300005535 Ga0070684_100058483 Ga0070684_1000584832 435
37 3300005563 Ga0068855_100000463 Ga0068855_10000046346 435
38 3300005616 Ga0068852_100087561 Ga0068852_1000875614 435
39 3300009093 Ga0105240_10039725 Ga0105240_100397257 435
40 3300010375 Ga0105239_10073172 Ga0105239_100731723 435
41 3300013105 Ga0157369_10269649 Ga0157369_102696492 435
42 3300013307 Ga0157372_10034385 Ga0157372_100343856 435
43 3300025913 Ga0207695_10000071 Ga0207695_1000007194 435
44 3300025944 Ga0207661_10016413 Ga0207661_100164133 435
45 3300025949 Ga0207667_10000209 Ga0207667_1000020971 435
46 3300026142 Ga0207698_10077868 Ga0207698_100778681 435
47 3300042876 Ga0451577_0098173 Ga0451577_0098173_1138_2577 435
48 iso_pu_bacteria 2821136567 2821138150 435
49 iso_pu_bacteria 2904467357 2904468945 435
50 3300003320 rootH2_10045602 rootH2_100456027 436
51 3300010375 Ga0105239_10016576 Ga0105239_100165764 436
52 3300026078 Ga0207702_10020489 Ga0207702_100204895 436
53 3300031251 Ga0265327_10006116 Ga0265327_100061169 436
54 3300041404 Ga0439436_0002702 Ga0439436_0002702_2888_4201 436
55 3300042014 Ga0439457_001199 Ga0439457_001199_5475_6788 436
56 3300044842 Ga0466957_0000009 Ga0466957_0000009_56863_58179 436
57 3300049581 Ga0501047_0005603 Ga0501047_0005603_6472_7785 436
58 3300049822 Ga0501035_0106202 Ga0501035_0106202_236_1549 436
59 3300049823 Ga0501044_0016671 Ga0501044_0016671_821_2134 436
60 3300005563 Ga0068855_100008378 Ga0068855_1000083788 437
61 3300009093 Ga0105240_10150241 Ga0105240_101502413 437
62 3300009545 Ga0105237_10032111 Ga0105237_100321114 437
63 3300013307 Ga0157372_10205532 Ga0157372_102055323 437
64 3300025913 Ga0207695_10174561 Ga0207695_101745612 437
65 3300025914 Ga0207671_10044528 Ga0207671_100445283 437
66 3300025949 Ga0207667_10009630 Ga0207667_100096307 437
67 3300026116 Ga0207674_10013465 Ga0207674_100134655 437
68 3300005288 Ga0065714_10082170 Ga0065714_100821701 438
69 3300032004 Ga0307414_10000967 Ga0307414_1000096711 438
70 3300009147 Ga0114129_10000267 Ga0114129_1000026758 440
71 3300030521 Ga0307511_10005409 Ga0307511_100054093 440
72 3300050507 nmdc:mga05p37_1247_c1 nmdc:mga05p37_1247_c1_2659_3993 440
73 3300005458 Ga0070681_10141538 Ga0070681_101415382 441
74 3300005563 Ga0068855_100042055 Ga0068855_1000420553 441
75 3300009093 Ga0105240_10002010 Ga0105240_1000201013 441
76 3300009545 Ga0105237_10006548 Ga0105237_1000654810 441
77 3300009545 Ga0105237_10040154 Ga0105237_100401543 441
78 3300013297 Ga0157378_10016092 Ga0157378_100160923 441
79 3300025912 Ga0207707_10157035 Ga0207707_101570352 441
80 3300025914 Ga0207671_10024058 Ga0207671_100240583 441
81 3300025949 Ga0207667_10004997 Ga0207667_100049979 441
82 3300028786 Ga0307517_10039647 Ga0307517_100396472 441
83 3300031730 Ga0307516_10002288 Ga0307516_1000228814 441
84 3300042007 Ga0439449_0002732 Ga0439449_0002732_499_1869 442
85 3300044712 Ga0453684_0029189 Ga0453684_0029189_411_1841 443
86 3300049130 Ga0501310_002378 Ga0501310_002378_210_1583 443
87 3300049161 Ga0501305_003442 Ga0501305_003442_174_1547 443
88 3300049163 Ga0501342_00061 Ga0501342_00061_182_1555 443
89 3300013102 Ga0157371_10014385 Ga0157371_100143855 444
90 3300031995 Ga0307409_100199146 Ga0307409_1001991461 444
91 3300032126 Ga0307415_100063501 Ga0307415_1000635012 444
92 3300049652 Ga0501202_007325 Ga0501202_007325_513_1907 444
93 3300049663 Ga0501223_013141 Ga0501223_013141_104_1498 444
94 3300049704 Ga0501221_002706 Ga0501221_002706_1113_2507 444
95 3300005331 Ga0070670_100021500 Ga0070670_1000215003 445
96 3300025925 Ga0207650_10017308 Ga0207650_100173083 445
97 3300005459 Ga0068867_100149811 Ga0068867_1001498112 446
98 3300025899 Ga0207642_10057239 Ga0207642_100572392 446
99 3300026089 Ga0207648_10063676 Ga0207648_100636762 446
100 3300028381 Ga0268264_10026241 Ga0268264_100262416 446
101 3300049581 Ga0501047_0125927 Ga0501047_0125927_506_1852 446
102 3300013296 Ga0157374_10035043 Ga0157374_100350431 447
103 3300031507 Ga0307509_10143219 Ga0307509_101432192 447
104 3300053086 Ga0500578_0000307 Ga0500578_0000307_47116_48468 447
105 3300053092 Ga0500583_0000290 Ga0500583_0000290_13672_15021 447
106 3300013307 Ga0157372_10173337 Ga0157372_101733372 448
107 3300037471 Ga0395905_0002413 Ga0395905_0002413_13684_15039 448
108 3300005329 Ga0070683_100033916 Ga0070683_1000339164 449
109 3300005330 Ga0070690_100001350 Ga0070690_1000013507 449
110 3300005335 Ga0070666_10036229 Ga0070666_100362291 449
111 3300005340 Ga0070689_100206988 Ga0070689_1002069881 449
112 3300005842 Ga0068858_100136515 Ga0068858_1001365154 449
113 3300006237 Ga0097621_100149181 Ga0097621_1001491811 449
114 3300006358 Ga0068871_100051379 Ga0068871_1000513794 449
115 3300009176 Ga0105242_10017601 Ga0105242_100176016 449
116 3300010375 Ga0105239_10116813 Ga0105239_101168132 449
117 3300013296 Ga0157374_10000982 Ga0157374_1000098219 449
118 3300013306 Ga0163162_10010781 Ga0163162_100107819 449
119 3300013308 Ga0157375_10002038 Ga0157375_100020389 449
120 3300014969 Ga0157376_10002592 Ga0157376_1000259215 449
121 3300017792 Ga0163161_10005937 Ga0163161_100059375 449
122 3300025933 Ga0207706_10076542 Ga0207706_100765421 449
123 3300025934 Ga0207686_10095244 Ga0207686_100952442 449
124 3300025942 Ga0207689_10014515 Ga0207689_100145154 449
125 3300025944 Ga0207661_10196023 Ga0207661_101960231 449
126 3300026035 Ga0207703_10249242 Ga0207703_102492422 449
127 3300031616 Ga0307508_10002678 Ga0307508_100026784 449
128 3300003322 rootL2_10365057 rootL2_103650571 450
129 3300028794 Ga0307515_10000001 Ga0307515_100000011344 450
130 3300003316 rootH1_10002806 rootH1_100028067 451
131 3300003322 rootL2_10294851 rootL2_102948513 451
132 3300005295 Ga0065707_10088261 Ga0065707_100882613 451

Structural Annotation

Top 5 Hits

ID Description Score Start End
4aui-assembly1.cif.gz_C structure and function of the porb porin from disseminating n. gonorrhoeae 0.7384 64 451
4aui-assembly1.cif.gz_C structure and function of the porb porin from disseminating n. gonorrhoeae 0.7363 64 451
3wi4-assembly1.cif.gz_A crystal structure of wild-type porb from neisseria meningitidis serogroup b 0.7023 64 451
3wi4-assembly1.cif.gz_A crystal structure of wild-type porb from neisseria meningitidis serogroup b 0.7003 64 451
6ehb-assembly1.cif.gz_B ompu, an outer membrane protein, of vibrio cholerae 0.6827 57 451
ID Description Score Start End Superfamily
4auiC00 Mainly Beta;Beta Barrel;Porin;Porin 0.7384 64 451 2.40.160.10
4auiC00 Mainly Beta;Beta Barrel;Porin;Porin 0.7363 64 451 2.40.160.10
1e54A00 Mainly Beta;Beta Barrel;Porin;Porin 0.6741 64 451 2.40.160.10
1e54A00 Mainly Beta;Beta Barrel;Porin;Porin 0.6705 64 451 2.40.160.10
3uu2B00 Mainly Beta;Beta Barrel;Porin;Porin 0.6672 55 451 2.40.160.10
ID Description Score Start End GO Terms
AF-A0A3N7ILI9-F1-model_v4 Porin 0.9665 105 451
AF-A0A3N7ILI9-F1-model_v4 Porin 0.9557 105 451
AF-A0A4S8HY91-F1-model_v4 Porin 0.9551 18 451
AF-A0A843TD60-F1-model_v4 Porin 0.9527 113 451
AF-A0A2N2W3H8-F1-model_v4 Porin 0.951 26 451

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Predicted Structure (AlphaFold2)

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