F149494

General Info

Members Datasets Scaffolds Average Seq Length
131 100 262 173

Family's Representative Sequence

Representative Sequence 3300026041|Ga0207639_10418538|Ga0207639_104185382
Length 203
Sequence VGYPALRPAVNGRMAKCPRPTYTAALTMIMTTGQIATAISDRFGARVLASFPDDKHPRVHVNADDWAELAAYLHGEPTLKFDWLQSLSGVDYVADGKLCVVYDLWSFDHRHSFAVKVFCPREDPHIPSVVRLWSAADWQEREAYDMFGILFDGHPDLRRILCADDWEGFPLRKDYVFPREYHGIPASVELDWQQQSDYPKGNG

Samples

Sample ID Description Type Environment
1 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
19 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
26 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
27 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
28 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
29 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
30 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
31 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
32 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
33 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
34 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
35 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
36 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
37 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
55 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
56 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
57 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
58 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
59 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
60 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
61 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
62 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
63 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
64 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
65 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
66 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
67 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
68 3300041503 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaG Metagenome Unclassified
69 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
70 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
71 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
72 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
73 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
74 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
75 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
76 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
77 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
78 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
79 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
80 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
81 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
82 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
83 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
84 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
85 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
86 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
87 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
88 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
89 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
94 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
95 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
96 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
99 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
100 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.76
Rhizosphere 97.71
Stem 0
Stem Tuber 0
Unclassified 12.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207639_10418538 3300026041 Bacteria 1211
2 Ga0070670_100107962 3300005331 Bacteria 2398
3 Ga0070670_100548923 3300005331 Bacteria 1031
4 Ga0070670_100658657 3300005331 Bacteria 940
5 Ga0068868_100684283 3300005338 Bacteria 916
6 Ga0070661_100034950 3300005344 Bacteria 3647
7 Ga0070661_100094099 3300005344 Bacteria 2220
8 Ga0070668_100514623 3300005347 Bacteria 1038
9 Ga0070675_100093484 3300005354 Bacteria 2522
10 Ga0070675_100133087 3300005354 Bacteria 2120
11 Ga0070675_100160386 3300005354 Bacteria 1933
12 Ga0070675_100421951 3300005354 Bacteria 1193
13 Ga0070671_100034673 3300005355 Bacteria 4178
14 Ga0070674_100124298 3300005356 Bacteria 1914
15 Ga0070673_100052143 3300005364 Bacteria 3208
16 Ga0070673_100132376 3300005364 Bacteria 2094
17 Ga0070667_100779624 3300005367 Bacteria 887
18 Ga0070708_100035811 3300005445 Unclassified 4326
19 Ga0070685_10564605 3300005466 Bacteria 814
20 Ga0070684_100473873 3300005535 Bacteria 1158
21 Ga0070672_100443251 3300005543 Bacteria 1118
22 Ga0068859_100332368 3300005617 Bacteria 1614
23 Ga0068864_100569336 3300005618 Bacteria 1097
24 Ga0068860_100552282 3300005843 Unclassified 1154
25 Ga0068862_100191215 3300005844 Bacteria 1842
26 Ga0081539_10049037 3300005985 Bacteria 2398
27 Ga0075428_100742812 3300006844 Bacteria 1044
28 Ga0075430_100516390 3300006846 Bacteria 986
29 Ga0075431_100209476 3300006847 Bacteria 1992
30 Ga0097620_100332401 3300006931 Bacteria 1614
31 Ga0105240_10320503 3300009093 Bacteria 1767
32 Ga0105245_10084481 3300009098 Bacteria 2908
33 Ga0105241_10790399 3300009174 Bacteria 873
34 Ga0105248_10804498 3300009177 Bacteria 1061
35 Ga0105237_10896180 3300009545 Unclassified 894
36 Ga0105238_10278637 3300009551 Unclassified 1653
37 Ga0105249_11186485 3300009553 Bacteria 834
38 Ga0105239_10005738 3300010375 Bacteria 14488
39 Ga0105246_10472456 3300011119 Bacteria 1059
40 Ga0157374_10912801 3300013296 Archaea 896
41 Ga0157372_10010317 3300013307 Bacteria 9926
42 Ga0157372_10400879 3300013307 Unclassified 1599
43 Ga0157372_10609658 3300013307 Bacteria 1272
44 Ga0157372_12186707 3300013307 Unclassified 636
45 Ga0157380_11044836 3300014326 Unclassified 853
46 Ga0157379_10284973 3300014968 Bacteria 1504
47 Ga0207645_10089666 3300025907 Bacteria 1977
48 Ga0207695_10317243 3300025913 Unclassified 1448
49 Ga0207649_10168180 3300025920 Unclassified 1525
50 Ga0207649_10252408 3300025920 Bacteria 1271
51 Ga0207650_10160643 3300025925 Bacteria 1780
52 Ga0207650_10164724 3300025925 Bacteria 1758
53 Ga0207659_10083405 3300025926 Bacteria 2369
54 Ga0207659_10184273 3300025926 Bacteria 1656
55 Ga0207659_10357549 3300025926 Bacteria 1213
56 Ga0207706_10789437 3300025933 Bacteria 807
57 Ga0207669_10293080 3300025937 Bacteria 1233
58 Ga0207691_10043267 3300025940 Bacteria 4151
59 Ga0207689_10384110 3300025942 Bacteria 1169
60 Ga0207679_10251933 3300025945 Bacteria 1502
61 Ga0207651_10304922 3300025960 Bacteria 1326
62 Ga0207668_10653955 3300025972 Bacteria 920
63 Ga0207677_10716932 3300026023 Bacteria 889
64 Ga0207677_10944133 3300026023 Bacteria 780
65 Ga0207674_10000909 3300026116 Bacteria 38609
66 Ga0207674_10117950 3300026116 Bacteria 2624
67 Ga0207683_10175107 3300026121 Bacteria 1944
68 Ga0268266_10000771 3300028379 Bacteria 42872
69 Ga0268264_10450359 3300028381 Unclassified 1247
70 Ga0307408_100352611 3300031548 Bacteria 1249
71 Ga0307405_10125385 3300031731 Bacteria 1765
72 Ga0307405_10219933 3300031731 Bacteria 1393
73 Ga0307413_10057984 3300031824 Bacteria 2371
74 Ga0307406_10077370 3300031901 Bacteria 2201
75 Ga0307406_10247619 3300031901 Bacteria 1341
76 Ga0307409_100057208 3300031995 Bacteria 3020
77 Ga0307409_100105368 3300031995 Bacteria 2351
78 Ga0307409_100123605 3300031995 Bacteria 2197
79 Ga0307414_10123572 3300032004 Bacteria 1995
80 Ga0307411_10014820 3300032005 Bacteria 4354
81 Ga0307411_10504226 3300032005 Bacteria 1024
82 Ga0307411_11070654 3300032005 Bacteria 725
83 Ga0307415_100313797 3300032126 Bacteria 1304
84 Ga0373937_0010821 3300036401 Bacteria 7985
85 Ga0373937_0719311 3300036401 Bacteria 945
86 Ga0373925_0391250 3300037068 Bacteria 1133
87 Ga0373925_0803236 3300037068 Bacteria 776
88 Ga0395900_0974072 3300037418 Bacteria 769
89 Ga0395901_0282244 3300038443 Bacteria 1725
90 Ga0451800_0653208 3300041459 Bacteria 661
91 Ga0451839_0134109 3300041496 Bacteria 650
92 Ga0451847_0911459 3300041503 Bacteria 787
93 Ga0453684_0293100 3300044712 Bacteria 1852
94 Ga0453684_0774697 3300044712 Bacteria 1037
95 Ga0451576_0273387 3300045051 Bacteria 1766
96 Ga0495592_0598309 3300046454 Archaea 673
97 Ga0495580_0537688 3300046472 Archaea 777
98 Ga0495664_0659744 3300046477 Archaea 620
99 Ga0495608_0153120 3300046511 Bacteria 1469
100 Ga0495618_0017046 3300046514 Unclassified 4452
101 Ga0495630_0002558 3300046517 Bacteria 12620
102 Ga0495666_0334923 3300046526 Archaea 682
103 Ga0495665_0220425 3300046531 Bacteria 981
104 Ga0495586_0330811 3300046535 Bacteria 874
105 Ga0495667_0032324 3300046559 Unclassified 3508
106 Ga0495599_0510038 3300046678 Bacteria 707
107 Ga0495613_0017441 3300046689 Bacteria 5346
108 Ga0495624_0174786 3300046690 Bacteria 1310
109 Ga0495581_0011694 3300047315 Bacteria 5078
110 Ga0495581_0366693 3300047315 Unclassified 841
111 Ga0495676_0105238 3300047321 Bacteria 2081
112 Ga0495680_0334210 3300047322 Unclassified 1058
113 Ga0495684_0042030 3300047471 Bacteria 3502
114 Ga0495684_0442238 3300047471 Bacteria 905
115 Ga0495684_0443707 3300047471 Bacteria 903
116 Ga0495614_0036346 3300048089 Bacteria 2115
117 Ga0501032_0424931 3300049569 Bacteria 852
118 Ga0501034_0000824 3300049571 Bacteria 46101
119 Ga0501034_0925811 3300049571 Unclassified 758
120 Ga0501037_0324568 3300049573 Unclassified 1065
121 Ga0501047_0044251 3300049581 Bacteria 4301
122 Ga0501070_0210255 3300049586 Unclassified 1597
123 Ga0501225_0086298 3300049705 Bacteria 906
124 Ga0501080_0030729 3300049742 Bacteria 5005
125 Ga0501083_0015905 3300049744 Bacteria 5266
126 Ga0501044_0000288 3300049823 Bacteria 64311
127 Ga0501044_0003738 3300049823 Bacteria 17099
128 nmdc:mga09592_21702_c1 3300050508 Bacteria 5294
129 nmdc:mga0qj67_506618_c1 3300050509 Bacteria 970
130 nmdc:mga0qj67_67020_c1 3300050509 Bacteria 2860
131 nmdc:mga08y16_864846_c1 3300050511 Bacteria 892
132 Ga0207639_10418538
133 Ga0070670_100107962
134 Ga0070670_100548923
135 Ga0070670_100658657
136 Ga0068868_100684283
137 Ga0070661_100034950
138 Ga0070661_100094099
139 Ga0070668_100514623
140 Ga0070675_100093484
141 Ga0070675_100133087
142 Ga0070675_100160386
143 Ga0070675_100421951
144 Ga0070671_100034673
145 Ga0070674_100124298
146 Ga0070673_100052143
147 Ga0070673_100132376
148 Ga0070667_100779624
149 Ga0070708_100035811
150 Ga0070685_10564605
151 Ga0070684_100473873
152 Ga0070672_100443251
153 Ga0068859_100332368
154 Ga0068864_100569336
155 Ga0068860_100552282
156 Ga0068862_100191215
157 Ga0081539_10049037
158 Ga0075428_100742812
159 Ga0075430_100516390
160 Ga0075431_100209476
161 Ga0097620_100332401
162 Ga0105240_10320503
163 Ga0105245_10084481
164 Ga0105241_10790399
165 Ga0105248_10804498
166 Ga0105237_10896180
167 Ga0105238_10278637
168 Ga0105249_11186485
169 Ga0105239_10005738
170 Ga0105246_10472456
171 Ga0157374_10912801
172 Ga0157372_10010317
173 Ga0157372_10400879
174 Ga0157372_10609658
175 Ga0157372_12186707
176 Ga0157380_11044836
177 Ga0157379_10284973
178 Ga0207645_10089666
179 Ga0207695_10317243
180 Ga0207649_10168180
181 Ga0207649_10252408
182 Ga0207650_10160643
183 Ga0207650_10164724
184 Ga0207659_10083405
185 Ga0207659_10184273
186 Ga0207659_10357549
187 Ga0207706_10789437
188 Ga0207669_10293080
189 Ga0207691_10043267
190 Ga0207689_10384110
191 Ga0207679_10251933
192 Ga0207651_10304922
193 Ga0207668_10653955
194 Ga0207677_10716932
195 Ga0207677_10944133
196 Ga0207674_10000909
197 Ga0207674_10117950
198 Ga0207683_10175107
199 Ga0268266_10000771
200 Ga0268264_10450359
201 Ga0307408_100352611
202 Ga0307405_10125385
203 Ga0307405_10219933
204 Ga0307413_10057984
205 Ga0307406_10077370
206 Ga0307406_10247619
207 Ga0307409_100057208
208 Ga0307409_100105368
209 Ga0307409_100123605
210 Ga0307414_10123572
211 Ga0307411_10014820
212 Ga0307411_10504226
213 Ga0307411_11070654
214 Ga0307415_100313797
215 Ga0373937_0010821
216 Ga0373937_0719311
217 Ga0373925_0391250
218 Ga0373925_0803236
219 Ga0395900_0974072
220 Ga0395901_0282244
221 Ga0451800_0653208
222 Ga0451839_0134109
223 Ga0451847_0911459
224 Ga0453684_0293100
225 Ga0453684_0774697
226 Ga0451576_0273387
227 Ga0495592_0598309
228 Ga0495580_0537688
229 Ga0495664_0659744
230 Ga0495608_0153120
231 Ga0495618_0017046
232 Ga0495630_0002558
233 Ga0495666_0334923
234 Ga0495665_0220425
235 Ga0495586_0330811
236 Ga0495667_0032324
237 Ga0495599_0510038
238 Ga0495613_0017441
239 Ga0495624_0174786
240 Ga0495581_0011694
241 Ga0495581_0366693
242 Ga0495676_0105238
243 Ga0495680_0334210
244 Ga0495684_0042030
245 Ga0495684_0442238
246 Ga0495684_0443707
247 Ga0495614_0036346
248 Ga0501032_0424931
249 Ga0501034_0000824
250 Ga0501034_0925811
251 Ga0501037_0324568
252 Ga0501047_0044251
253 Ga0501070_0210255
254 Ga0501225_0086298
255 Ga0501080_0030729
256 Ga0501083_0015905
257 Ga0501044_0000288
258 Ga0501044_0003738
259 nmdc:mga09592_21702_c1
260 nmdc:mga0qj67_506618_c1
261 nmdc:mga0qj67_67020_c1
262 nmdc:mga08y16_864846_c1

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00329

Complex1_30kDa

Respiratory-chain NADH dehydrogenase, 30 Kd subunit

59

181

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3mcr-assembly1.cif.gz_A crystal structure of nadh dehydrogenase subunit c (tfu_2693) from thermobifida fusca yx-er1 at 2.65 a resolution 0.8853 2 126
8bqs-assembly1.cif.gz_AO cryo-em structure of the i-ii-iii2-iv2 respiratory supercomplex from tetrahymena thermophila 0.8419 10 134
8gym-assembly1.cif.gz_s3 cryo-em structure of tetrahymena thermophila respiratory mega-complex mc iv2+(i+iii2+ii)2 0.8405 9 134
2ia7-assembly1.cif.gz_A crystal structure of putative tail lysozyme (np_952040.1) from geobacter sulfurreducens at 1.44 a resolution 0.8332 55 91
7zmg-assembly1.cif.gz_G cryoem structure of mitochondrial complex i from chaetomium thermophilum (state 1) 0.8257 3 147
ID Description Score Start End Superfamily
af_Q9VZU4_36_188_3.30.460.80 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;NADH:ubiquinone oxidoreductase Nqo5 subunit 0.9209 3 130 3.30.460.80
af_A0A1D8PJ73_47_194_3.30.460.80 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;NADH:ubiquinone oxidoreductase Nqo5 subunit 0.9161 3 130 3.30.460.80
af_A0A2P2CLF6_6_131_3.30.460.80 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;NADH:ubiquinone oxidoreductase Nqo5 subunit 0.9118 8 130 3.30.460.80
af_P22237_2_142_3.30.460.80 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;NADH:ubiquinone oxidoreductase Nqo5 subunit 0.9106 3 130 3.30.460.80
af_P9WJH3_48_196_3.30.460.80 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;NADH:ubiquinone oxidoreductase Nqo5 subunit 0.8868 2 130 3.30.460.80
ID Description Score Start End GO Terms
AF-A0A7X5WD48-F1-model_v4 deleted 0.9384 5 126
AF-A0A3M1L5S8-F1-model_v4 NADH-quinone oxidoreductase subunit C 0.9381 1 100 GO:0008137
AF-A0A661V3C8-F1-model_v4 NADH:ubiquinone oxidoreductase 30kDa subunit domain-containing protein 0.9314 4 128 GO:0008137
AF-A0A3M1L5S8-F1-model_v4 NADH-quinone oxidoreductase subunit C 0.9292 1 100 GO:0008137
AF-A0A353GJV5-F1-model_v4 NADH:ubiquinone oxidoreductase 30kDa subunit domain-containing protein 0.9204 1 119 GO:0008137

Map