F147726

General Info

Members Datasets Scaffolds Average Seq Length
131 102 128 545

Family's Representative Sequence

Representative Sequence 3300004799|Ga0058863_10121961|Ga0058863_101219613
Length 607
Sequence MATALTPDFAPFTASANGPATAVLTVRQRCEILRGQLEAERASFIAHWKDLNDYIRPRRGRFAVTDVNKGDRRSRNILDSTATFSARVLSAGMMSGITSPARPWFRLTTPDQDVADQGDVKQWLHEVEERMRMVFLRSNLYNILPIVYGDLGVFGTSAMAIYEDDESVIRCYDFPVGSYFIANDDKLRVRTFGRVFRMTVDQIVKRWGDIDQTGRPCFLRGEPCTISATVQNLWMRGNRAAWIDIVHIIQENLAYDGNKIDARFKAFEDIYYELGTPNVAIADQQIGVLSHQGFDEFPVLCPRWETNSEDVYATDCPGMTALGDIKELQTRTKRQAQAVEKMINPPMTGPSALRQAKASLLPGDITYLDVNNANQGFKPAHEVNFGAAFGPLEDGSQKTRLRIQRAFYEDLFLMLSQSDRREITAREIDERHEEKLLALGPVLERLNQDLLDPLIERTFAIMSRKGLIPPAPDAIQGQSLRIDYVSIMAQAQKAQSLSGLERFAGFIGQTAEVDPSVLDKVNSDELVNQYADATGIAPKIVRSDDEVQAMRDQKAKAANMPGIAGAAKDLSQTQTTGNSVLANLVSKARARQTLNATANPVPAGGVA

Samples

Sample ID Description Type Environment
1 2939573065 Citrobacter sp. 506 Isolate Rhizosphere
2 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
5 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
6 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
7 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
25 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
28 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
29 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
44 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
45 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
46 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
47 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
48 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
49 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
50 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
51 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
52 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
53 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
54 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
55 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
56 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
57 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
58 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
59 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
60 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
61 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
62 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
63 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
64 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
65 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
66 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
67 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
68 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
69 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
70 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
71 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
72 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
73 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
74 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
75 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
76 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
77 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
78 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
79 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
80 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
81 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
82 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
83 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
84 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
85 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
86 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
87 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
88 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
89 3300049518 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_B_5_control Metagenome Rhizosphere
90 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049684 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_B_3_control Metagenome Rhizosphere
92 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
93 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
94 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
95 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
96 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
97 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
98 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
99 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
100 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
101 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
102 8055097453 Leclercia tamurae H6W5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.95
Metatranscriptomes 1.53
Isolates 1.53

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.11
Nodule 2.29
Rhizoplane 1.53
Rhizosphere 85.5
Stem 0
Stem Tuber 0
Unclassified 4.58

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24751J29686_10002658 3300002459 Viruses 3596
2 rootL2_10021850 3300003322 Bacteria 47247
3 Ga0058863_10121961 3300004799 Viruses 3774
4 Ga0058862_10212931 3300004803 Viruses 3582
5 Ga0065704_10070245 3300005289 Bacteria 48841
6 Ga0065712_10000193 3300005290 Bacteria 22285
7 Ga0065712_10000201 3300005290 Bacteria 39891
8 Ga0070683_100000360 3300005329 Bacteria 31521
9 Ga0070683_100016459 3300005329 Bacteria 6523
10 Ga0070670_100004925 3300005331 Bacteria 11239
11 Ga0070670_100030061 3300005331 Viruses 4678
12 Ga0070668_100021818 3300005347 Bacteria 4838
13 Ga0070710_10000069 3300005437 Viruses 47294
14 Ga0070662_100003222 3300005457 Bacteria 10145
15 Ga0070681_10011943 3300005458 Bacteria 8611
16 Ga0070681_10016569 3300005458 Bacteria 7359
17 Ga0070681_10033181 3300005458 Bacteria 5182
18 Ga0070698_100002821 3300005471 Bacteria 19115
19 Ga0070679_100023835 3300005530 Bacteria 5996
20 Ga0070679_100046883 3300005530 Viruses 4308
21 Ga0068855_100158955 3300005563 Bacteria 2566
22 Ga0068856_100095778 3300005614 Archaea 2956
23 Ga0068859_100003020 3300005617 Viruses 17060
24 Ga0068864_100021506 3300005618 Bacteria 5404
25 Ga0068864_100028717 3300005618 Unclassified 4705
26 Ga0068861_100001510 3300005719 Bacteria 14753
27 Ga0081539_10005083 3300005985 Bacteria 13786
28 Ga0075365_10004787 3300006038 Bacteria 7224
29 Ga0097620_100003020 3300006931 Viruses 17060
30 Ga0079104_1000525 3300006946 Viruses 40739
31 Ga0075435_100000145 3300007076 Bacteria 40150
32 Ga0105238_10010116 3300009551 Bacteria 9456
33 Ga0105246_10002164 3300011119 Bacteria 11863
34 Ga0163163_10034237 3300014325 Viruses 4917
35 Ga0163163_10049210 3300014325 Viruses 4147
36 Ga0209148_1000820 3300025254 Bacteria 22417
37 Ga0209455_1000802 3300025272 Bacteria 17299
38 Ga0207692_10000031 3300025898 Viruses 47298
39 Ga0207707_10014619 3300025912 Bacteria 6839
40 Ga0207707_10049360 3300025912 Viruses 3666
41 Ga0207660_10062555 3300025917 Bacteria 2681
42 Ga0207652_10014927 3300025921 Bacteria 6298
43 Ga0207694_10007060 3300025924 Bacteria 8526
44 Ga0207650_10001222 3300025925 Bacteria 18819
45 Ga0207650_10007173 3300025925 Bacteria 7596
46 Ga0207706_10007679 3300025933 Bacteria 9961
47 Ga0207661_10035362 3300025944 Bacteria 3892
48 Ga0207667_10030679 3300025949 Bacteria 5811
49 Ga0207667_10091459 3300025949 Bacteria 3143
50 Ga0207702_10037759 3300026078 Unclassified 4044
51 Ga0207676_10074997 3300026095 Bacteria 2727
52 Ga0207676_10096758 3300026095 Viruses 2437
53 Ga0207675_100000557 3300026118 Bacteria 36421
54 Ga0209281_1000014 3300027111 Bacteria 643021
55 Ga0209966_1000665 3300027695 Bacteria 7600
56 Ga0307515_10001880 3300028794 Bacteria 46721
57 Ga0265338_10038574 3300028800 Bacteria 4523
58 Ga0307408_100005691 3300031548 Bacteria 8306
59 Ga0307408_100007587 3300031548 Bacteria 7172
60 Ga0307408_100008504 3300031548 Bacteria 6777
61 Ga0307405_10000109 3300031731 Bacteria 33914
62 Ga0307406_10000112 3300031901 Bacteria 46783
63 Ga0307406_10001493 3300031901 Bacteria 12923
64 Ga0307416_100000732 3300032002 Bacteria 17098
65 Ga0307414_10000189 3300032004 Bacteria 41445
66 Ga0307414_10034948 3300032004 Bacteria 3338
67 Ga0307411_10000027 3300032005 Bacteria 50474
68 Ga0307415_100000077 3300032126 Bacteria 39889
69 Ga0395899_0000235 3300037312 Bacteria 74348
70 Ga0395899_0000480 3300037312 Bacteria 44677
71 Ga0395899_0009647 3300037312 Bacteria 7409
72 Ga0395899_0033243 3300037312 Bacteria 3873
73 Ga0395900_0000768 3300037418 Bacteria 42674
74 Ga0395900_0008259 3300037418 Bacteria 10718
75 Ga0395900_0025373 3300037418 Bacteria 6068
76 Ga0395898_0001066 3300037466 Bacteria 42674
77 Ga0395898_0001103 3300037466 Bacteria 41638
78 Ga0395898_0002114 3300037466 Bacteria 24535
79 Ga0395898_0019365 3300037466 Bacteria 6928
80 Ga0395905_0000753 3300037471 Bacteria 42690
81 Ga0395901_0006633 3300038443 Bacteria 11696
82 Ga0436365_1233487 3300039437 Bacteria 3305
83 Ga0439453_0000623 3300041408 Bacteria 4002
84 Ga0439458_0000657 3300042157 Bacteria 8910
85 Ga0451577_0000736 3300042876 Bacteria 50682
86 Ga0453684_0002087 3300044712 Bacteria 50682
87 Ga0453684_0055134 3300044712 Bacteria 5170
88 Ga0451576_0115098 3300045051 Viruses 2800
89 Ga0495651_0000891 3300046462 Bacteria 23226
90 Ga0495606_0010028 3300046507 Bacteria 7919
91 Ga0495610_0000146 3300046512 Bacteria 77326
92 Ga0495618_0000629 3300046514 Bacteria 24983
93 Ga0495618_0004442 3300046514 Bacteria 8626
94 Ga0495630_0000429 3300046517 Bacteria 32108
95 Ga0495630_0000619 3300046517 Bacteria 25722
96 Ga0495652_0024477 3300046529 Bacteria 5344
97 Ga0495587_0000169 3300046536 Bacteria 47752
98 Ga0495587_0000215 3300046536 Bacteria 42857
99 Ga0495597_0002281 3300046542 Viruses 12456
100 Ga0495667_0000388 3300046559 Bacteria 27971
101 Ga0495656_0000074 3300046615 Bacteria 44629
102 Ga0495668_0002525 3300046616 Bacteria 14943
103 Ga0495634_0054191 3300046642 Bacteria 2685
104 Ga0495599_0000221 3300046678 Bacteria 36637
105 Ga0495613_0100057 3300046689 Bacteria 2094
106 Ga0495660_0000679 3300046810 Bacteria 26109
107 Ga0495676_0004026 3300047321 Bacteria 13374
108 Ga0495684_0001880 3300047471 Bacteria 16815
109 Ga0495626_0000382 3300048091 Bacteria 45946
110 Ga0496110_0000119 3300048913 Bacteria 43749
111 Ga0496111_0000063 3300048914 Bacteria 43828
112 Ga0496117_0078316 3300048920 Bacteria 2183
113 Ga0496118_0001187 3300048921 Bacteria 40177
114 Ga0496124_0001212 3300048927 Bacteria 39922
115 Ga0495678_003076 3300049459 Bacteria 10588
116 Ga0501295_001860 3300049518 Unclassified 2277
117 Ga0501047_0038754 3300049581 Viruses 4611
118 Ga0501255_001287 3300049684 Bacteria 1990
119 nmdc:mga03683_24023_c2 3300050489 Bacteria 2004
120 nmdc:mga0yw44_9670_c1 3300050492 Viruses 4893
121 nmdc:mga0n895_72057_c1 3300050512 Unclassified 3427
122 nmdc:mga0rr50_138_c1 3300050513 Bacteria 40150
123 nmdc:mga0a205_8186_c1 3300050515 Bacteria 9497
124 Ga0500593_051199 3300053117 Bacteria 1833
125 Ga0500568_0006494 3300053139 Bacteria 5863
126 Ga0500616_0001406 3300053153 Bacteria 23197
127 Ga0590074_000388 3300059423 Bacteria 6256
128 Ga0590075_000843 3300059424 Bacteria 8060

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046514 Ga0495618_0004442 Ga0495618_0004442_192_1655 425
2 3300046559 Ga0495667_0000388 Ga0495667_0000388_13338_14801 425
3 3300046689 Ga0495613_0100057 Ga0495613_0100057_168_1631 425
4 3300011119 Ga0105246_10002164 Ga0105246_1000216412 426
5 3300003322 rootL2_10021850 rootL2_1002185042 458
6 3300046512 Ga0495610_0000146 Ga0495610_0000146_20844_22448 468
7 3300037312 Ga0395899_0009647 Ga0395899_0009647_759_2417 474
8 3300037418 Ga0395900_0000768 Ga0395900_0000768_30637_32295 474
9 3300037466 Ga0395898_0001066 Ga0395898_0001066_18340_19998 474
10 3300037471 Ga0395905_0000753 Ga0395905_0000753_18262_19920 474
11 3300005289 Ga0065704_10070245 Ga0065704_1007024536 477
12 3300037312 Ga0395899_0000235 Ga0395899_0000235_31951_33606 479
13 3300046536 Ga0495587_0000169 Ga0495587_0000169_2498_4369 479
14 3300046616 Ga0495668_0002525 Ga0495668_0002525_1235_2890 479
15 3300053117 Ga0500593_051199 Ga0500593_051199_106_1776 479
16 3300046542 Ga0495597_0002281 Ga0495597_0002281_6117_7772 480
17 3300005437 Ga0070710_10000069 Ga0070710_1000006924 481
18 3300025898 Ga0207692_10000031 Ga0207692_1000003139 481
19 3300028794 Ga0307515_10001880 Ga0307515_1000188041 481
20 3300026078 Ga0207702_10037759 Ga0207702_100377593 482
21 3300046529 Ga0495652_0024477 Ga0495652_0024477_3268_4905 482
22 3300046536 Ga0495587_0000215 Ga0495587_0000215_21378_23033 482
23 3300046615 Ga0495656_0000074 Ga0495656_0000074_31571_33238 482
24 3300039437 Ga0436365_1233487 Ga0436365_1233487_1124_2836 483
25 3300045051 Ga0451576_0115098 Ga0451576_0115098_1018_2718 483
26 3300046517 Ga0495630_0000429 Ga0495630_0000429_1468_3105 483
27 3300046642 Ga0495634_0054191 Ga0495634_0054191_545_2182 483
28 3300046678 Ga0495599_0000221 Ga0495599_0000221_30040_31677 483
29 3300047471 Ga0495684_0001880 Ga0495684_0001880_38_1675 483
30 3300049459 Ga0495678_003076 Ga0495678_003076_2094_3782 484
31 3300037466 Ga0395898_0001103 Ga0395898_0001103_27996_29714 485
32 3300041408 Ga0439453_0000623 Ga0439453_0000623_1372_3039 485
33 3300042157 Ga0439458_0000657 Ga0439458_0000657_2888_4555 485
34 3300046810 Ga0495660_0000679 Ga0495660_0000679_6084_7778 486
35 3300053139 Ga0500568_0006494 Ga0500568_0006494_1197_2906 487
36 3300005458 Ga0070681_10016569 Ga0070681_100165695 488
37 3300025254 Ga0209148_1000820 Ga0209148_100082021 488
38 3300025272 Ga0209455_1000802 Ga0209455_10008022 488
39 3300025912 Ga0207707_10014619 Ga0207707_100146198 488
40 3300042876 Ga0451577_0000736 Ga0451577_0000736_45884_47716 488
41 3300044712 Ga0453684_0002087 Ga0453684_0002087_21055_22887 488
42 iso_pu_bacteria 2939573065 2939575574 488
43 iso_pu_bacteria 8055097453 8055100373 488
44 3300037312 Ga0395899_0033243 Ga0395899_0033243_1746_3434 489
45 3300037466 Ga0395898_0019365 Ga0395898_0019365_415_2151 489
46 3300049518 Ga0501295_001860 Ga0501295_001860_512_2203 489
47 3300005614 Ga0068856_100095778 Ga0068856_1000957783 490
48 3300006946 Ga0079104_1000525 Ga0079104_100052523 490
49 3300009551 Ga0105238_10010116 Ga0105238_100101166 490
50 3300025924 Ga0207694_10007060 Ga0207694_100070609 490
51 3300027111 Ga0209281_1000014 Ga0209281_1000014113 490
52 3300027111 Ga0209281_1000014 Ga0209281_1000014165 490
53 3300028800 Ga0265338_10038574 Ga0265338_100385743 490
54 3300031548 Ga0307408_100005691 Ga0307408_1000056914 490
55 3300031901 Ga0307406_10000112 Ga0307406_1000011252 490
56 3300037466 Ga0395898_0002114 Ga0395898_0002114_1316_3004 490
57 3300046507 Ga0495606_0010028 Ga0495606_0010028_1747_3441 490
58 3300048091 Ga0495626_0000382 Ga0495626_0000382_10570_12252 490
59 3300048920 Ga0496117_0078316 Ga0496117_0078316_313_1983 490
60 3300048921 Ga0496118_0001187 Ga0496118_0001187_21493_23163 490
61 3300048927 Ga0496124_0001212 Ga0496124_0001212_20079_21749 490
62 3300059423 Ga0590074_000388 Ga0590074_000388_2023_3741 490
63 3300059424 Ga0590075_000843 Ga0590075_000843_4313_6031 490
64 3300005617 Ga0068859_100003020 Ga0068859_10000302013 491
65 3300006931 Ga0097620_100003020 Ga0097620_10000302013 491
66 3300031548 Ga0307408_100007587 Ga0307408_1000075872 491
67 3300031548 Ga0307408_100008504 Ga0307408_1000085043 491
68 3300031731 Ga0307405_10000109 Ga0307405_1000010949 491
69 3300031901 Ga0307406_10001493 Ga0307406_100014939 491
70 3300032002 Ga0307416_100000732 Ga0307416_1000007326 491
71 3300032004 Ga0307414_10000189 Ga0307414_1000018920 491
72 3300032004 Ga0307414_10034948 Ga0307414_100349483 491
73 3300032005 Ga0307411_10000027 Ga0307411_1000002719 491
74 3300032126 Ga0307415_100000077 Ga0307415_10000007723 491
75 3300047321 Ga0495676_0004026 Ga0495676_0004026_10942_12681 491
76 3300049581 Ga0501047_0038754 Ga0501047_0038754_285_1982 491
77 3300049684 Ga0501255_001287 Ga0501255_001287_171_1856 491
78 3300004799 Ga0058863_10121961 Ga0058863_101219613 492
79 3300004803 Ga0058862_10212931 Ga0058862_102129314 492
80 3300005290 Ga0065712_10000201 Ga0065712_1000020147 492
81 3300005458 Ga0070681_10011943 Ga0070681_100119435 492
82 3300005471 Ga0070698_100002821 Ga0070698_10000282118 492
83 3300005530 Ga0070679_100023835 Ga0070679_1000238353 492
84 3300005563 Ga0068855_100158955 Ga0068855_1001589552 492
85 3300005719 Ga0068861_100001510 Ga0068861_1000015103 492
86 3300007076 Ga0075435_100000145 Ga0075435_10000014518 492
87 3300025921 Ga0207652_10014927 Ga0207652_100149276 492
88 3300025949 Ga0207667_10091459 Ga0207667_100914593 492
89 3300026118 Ga0207675_100000557 Ga0207675_1000005575 492
90 3300046462 Ga0495651_0000891 Ga0495651_0000891_18822_20663 492
91 3300050512 nmdc:mga0n895_72057_c1 nmdc:mga0n895_72057_c1_25_1842 492
92 3300050513 nmdc:mga0rr50_138_c1 nmdc:mga0rr50_138_c1_20219_22036 492
93 3300044712 Ga0453684_0055134 Ga0453684_0055134_2967_4709 493
94 3300046514 Ga0495618_0000629 Ga0495618_0000629_4041_5831 493
95 3300048913 Ga0496110_0000119 Ga0496110_0000119_30812_32533 493
96 3300048914 Ga0496111_0000063 Ga0496111_0000063_28723_30444 493
97 3300050515 nmdc:mga0a205_8186_c1 nmdc:mga0a205_8186_c1_767_2569 493
98 3300005458 Ga0070681_10033181 Ga0070681_100331813 494
99 3300005530 Ga0070679_100046883 Ga0070679_1000468833 494
100 3300005985 Ga0081539_10005083 Ga0081539_100050838 494
101 3300006038 Ga0075365_10004787 Ga0075365_100047874 494
102 3300025912 Ga0207707_10049360 Ga0207707_100493603 494
103 3300025917 Ga0207660_10062555 Ga0207660_100625553 494
104 3300025949 Ga0207667_10030679 Ga0207667_100306795 494
105 3300027695 Ga0209966_1000665 Ga0209966_10006659 494
106 3300037312 Ga0395899_0000480 Ga0395899_0000480_36564_38318 494
107 3300037418 Ga0395900_0008259 Ga0395900_0008259_2958_4712 494
108 3300037418 Ga0395900_0025373 Ga0395900_0025373_4313_6055 494
109 3300038443 Ga0395901_0006633 Ga0395901_0006633_7307_9049 494
110 3300050489 nmdc:mga03683_24023_c2 nmdc:mga03683_24023_c2_273_1934 494
111 3300050492 nmdc:mga0yw44_9670_c1 nmdc:mga0yw44_9670_c1_918_2579 494
112 3300053153 Ga0500616_0001406 Ga0500616_0001406_7100_8761 494
113 3300005329 Ga0070683_100016459 Ga0070683_1000164598 499
114 3300005331 Ga0070670_100004925 Ga0070670_10000492517 499
115 3300005618 Ga0068864_100028717 Ga0068864_1000287173 499
116 3300014325 Ga0163163_10034237 Ga0163163_100342376 499
117 3300025925 Ga0207650_10001222 Ga0207650_1000122224 499
118 3300025944 Ga0207661_10035362 Ga0207661_100353626 499
119 3300026095 Ga0207676_10074997 Ga0207676_100749973 499
120 3300046517 Ga0495630_0000619 Ga0495630_0000619_18858_20534 499
121 3300005347 Ga0070668_100021818 Ga0070668_1000218184 500
122 3300005457 Ga0070662_100003222 Ga0070662_1000032224 500
123 3300025933 Ga0207706_10007679 Ga0207706_100076797 500
124 3300002459 JGI24751J29686_10002658 JGI24751J29686_100026585 501
125 3300005290 Ga0065712_10000193 Ga0065712_100001936 501
126 3300005329 Ga0070683_100000360 Ga0070683_10000036018 501
127 3300005331 Ga0070670_100030061 Ga0070670_1000300616 501
128 3300005618 Ga0068864_100021506 Ga0068864_1000215067 501
129 3300014325 Ga0163163_10049210 Ga0163163_100492105 501
130 3300025925 Ga0207650_10007173 Ga0207650_100071738 501
131 3300026095 Ga0207676_10096758 Ga0207676_100967582 501

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12236

Head-tail_con

Bacteriophage head to tail connecting protein

27

541

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
8ck0-assembly1.cif.gz_A carin1 bacteriophage portal assembly 0.8374 6 486
8ck0-assembly1.cif.gz_A carin1 bacteriophage portal assembly 0.7989 6 486
8i4m-assembly1.cif.gz_T portal-tail complex structure of the cyanophage p-scsp1u 0.6782 9 488
8dgf-assembly1.cif.gz_G avs4 bound to phage phiv-1 portal 0.6735 9 426
7y1c-assembly1.cif.gz_L cryoem structure of klebsiella phage kp9 tail complex applied with c6 symmetry 0.6699 14 473
ID Description Score Start End Superfamily
af_Q4DL24_425_648_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6858 209 251 2.130.10.10
af_O45087_265_444_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6662 209 251 2.130.10.10
af_Q24246_225_498_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.5715 207 251 2.130.10.10
af_Q2TTK0_755_909_2.70.130.10 Mainly Beta;Distorted Sandwich;Cation-dependent Mannose-6-phosphate Receptor; Chain A;Mannose-6-phosphate receptor binding domain 0.5122 209 248 2.70.130.10
af_Q9VW61_25_166_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.5022 414 491 1.20.140.150
ID Description Score Start End GO Terms
AF-A0A352SEB5-F1-model_v4 Uncharacterized protein 0.9571 2 258 GO:0046718
AF-A0A0F8X0B4-F1-model_v4 Uncharacterized protein 0.9477 4 201 GO:0044423
GO:0046718
AF-A0A0F9D1K1-F1-model_v4 Uncharacterized protein 0.9308 6 221 GO:0044423
GO:0046718
AF-A0A5C1M9H4-F1-model_v4 Phage portal protein 0.9305 6 176 GO:0046718
AF-A0A359MG77-F1-model_v4 deleted 0.9198 2 300

Feature Viewer

pLDDT pTM Quality
79.4 0.73 High
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Predicted Structure (AlphaFold2)

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