F146182

General Info

Members Datasets Scaffolds Average Seq Length
130 108 260 263

Family's Representative Sequence

Representative Sequence 3300035090|Ga0373949_0000081|Ga0373949_0000081_23133_24023
Length 296
Sequence MLSTSDPAPGLRTPAIRALYTSALPQAHRPMIESIHRYPRTQHLEGSRLQPGDSDLTQVPLSDLRGAYCVVEEKLDGANAGISVGDDGRIRLQSRGHVLVGGAREKHWDLFKQWARTHEAALAARIPAGATLYGEWLYAKHTIYYDQLPHYFLEFDMRDATGAFWSTARRAAHLAGSPVVSVPVLWRGVVTAPGELPKLVAHSLYKSPRWRERMREVAAAASVDPDRTALETDPTDLAEGLYLKVEDPDTGVVLGRYKWIRASFLTSVLDSGSHWLNRPIVPNQLTDGVELFAEHP

Samples

Sample ID Description Type Environment
1 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
4 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
7 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
8 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
14 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
15 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
34 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
45 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
47 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
48 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
49 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
50 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
51 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
52 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
53 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
54 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
55 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
56 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
57 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
58 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
59 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
60 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
61 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
62 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
63 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
64 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
65 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
66 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
67 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
68 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
69 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
70 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
71 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
72 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
73 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
74 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
75 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
76 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
77 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
78 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
79 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
80 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
81 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
82 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
83 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
87 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
88 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
89 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
90 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
91 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
92 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
93 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
94 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
95 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
96 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
97 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
98 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
99 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
100 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
101 2831426010 Nostoc sp. 106C Isolate Unclassified
102 2848694841 Nostoc sp. RF31YmG Isolate Unclassified
103 2849660919 Nostoc sp. T09 Isolate Unclassified
104 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
105 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
106 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
107 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
108 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.08
Metatranscriptomes 0
Isolates 6.92

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.77
Nodule 3.85
Rhizoplane 0.77
Rhizosphere 81.54
Stem 0
Stem Tuber 0
Unclassified 4.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0373949_0000081 3300035090 Bacteria 35760
2 Ga0070683_100015973 3300005329 Bacteria 6605
3 Ga0070687_100114903 3300005343 Bacteria 1530
4 Ga0070667_100169981 3300005367 Bacteria 1924
5 Ga0070714_100221220 3300005435 Bacteria 1740
6 Ga0070713_100141331 3300005436 Bacteria 2133
7 Ga0070710_10000470 3300005437 Bacteria 18972
8 Ga0070701_10033130 3300005438 Unclassified 2579
9 Ga0070707_100308574 3300005468 Bacteria 1538
10 Ga0070698_100028990 3300005471 Bacteria 5746
11 Ga0070679_100058653 3300005530 Unclassified 3836
12 Ga0070684_100006900 3300005535 Bacteria 8818
13 Ga0070697_100367127 3300005536 Bacteria 1245
14 Ga0070696_100622431 3300005546 Unclassified 872
15 Ga0070693_100368168 3300005547 Bacteria 988
16 Ga0070665_100281097 3300005548 Bacteria 1666
17 Ga0070704_100021152 3300005549 Bacteria 4212
18 Ga0068852_100400403 3300005616 Bacteria 1350
19 Ga0068863_100069173 3300005841 Bacteria 3338
20 Ga0081455_10020317 3300005937 Bacteria 6260
21 Ga0081455_10213195 3300005937 Bacteria 1437
22 Ga0081539_10158216 3300005985 Unclassified 1082
23 Ga0070715_10025722 3300006163 Bacteria 2335
24 Ga0075431_100023888 3300006847 Bacteria 6258
25 Ga0075431_100542715 3300006847 Bacteria 1151
26 Ga0075431_100545700 3300006847 Bacteria 1147
27 Ga0075434_100142215 3300006871 Bacteria 2419
28 Ga0075429_100096032 3300006880 Bacteria 2585
29 Ga0075429_100113749 3300006880 Bacteria 2365
30 Ga0079104_1000161 3300006946 Bacteria 94458
31 Ga0079104_1014828 3300006946 Bacteria 2336
32 Ga0111539_10532142 3300009094 Bacteria 1369
33 Ga0111539_10633794 3300009094 Bacteria 1245
34 Ga0114129_10233627 3300009147 Bacteria 2475
35 Ga0105248_10177778 3300009177 Bacteria 2398
36 Ga0105237_10058182 3300009545 Bacteria 3869
37 Ga0105249_10202208 3300009553 Bacteria 1945
38 Ga0105239_10198765 3300010375 Bacteria 2246
39 Ga0213876_10000017 3300021384 Bacteria 297728
40 Ga0207692_10001187 3300025898 Bacteria 9665
41 Ga0207642_10269913 3300025899 Bacteria 974
42 Ga0207685_10191975 3300025905 Bacteria 954
43 Ga0207671_10301105 3300025914 Bacteria 1267
44 Ga0207662_10107964 3300025918 Unclassified 1732
45 Ga0207646_10167190 3300025922 Bacteria 1986
46 Ga0207711_10085432 3300025941 Bacteria 2765
47 Ga0207661_10015060 3300025944 Bacteria 5680
48 Ga0207712_10136849 3300025961 Bacteria 1874
49 Ga0207712_10205078 3300025961 Bacteria 1566
50 Ga0207708_10105155 3300026075 Bacteria 2188
51 Ga0209281_1000231 3300027111 Bacteria 117695
52 Ga0209281_1000950 3300027111 Bacteria 23634
53 Ga0209281_1016509 3300027111 Bacteria 1516
54 Ga0268266_10101795 3300028379 Bacteria 2533
55 Ga0307515_10009595 3300028794 Bacteria 18694
56 Ga0265338_10037838 3300028800 Bacteria 4582
57 Ga0316177_1205165 3300030731 Bacteria 2451
58 Ga0316176_1122259 3300030732 Bacteria 2000
59 Ga0314311_1164410 3300030733 Bacteria 1602
60 Ga0316180_1184263 3300030736 Bacteria 2193
61 Ga0307509_10001582 3300031507 Bacteria 38308
62 Ga0307509_10074435 3300031507 Bacteria 3532
63 Ga0307509_10090271 3300031507 Bacteria 3140
64 Ga0307413_10368135 3300031824 Bacteria 1115
65 Ga0307415_100216751 3300032126 Bacteria 1531
66 Ga0307507_10245375 3300033179 Bacteria 1165
67 Ga0373949_0000144 3300035090 Bacteria 26810
68 Ga0373941_0001775 3300035115 Bacteria 4646
69 Ga0373954_0011243 3300035118 Bacteria 3963
70 Ga0373956_0000395 3300035119 Bacteria 17812
71 Ga0373927_0000017 3300035695 Bacteria 152346
72 Ga0373933_0020852 3300035724 Bacteria 3717
73 Ga0395900_0185461 3300037418 Bacteria 2112
74 Ga0395898_0263875 3300037466 Bacteria 1643
75 Ga0395905_0034760 3300037471 Bacteria 4733
76 Ga0395901_0499083 3300038443 Bacteria 1239
77 Ga0400483_240400 3300039062 Bacteria 2868
78 Ga0400487_51633 3300039110 Unclassified 4104
79 Ga0436365_0151695 3300039437 Bacteria 1317
80 Ga0436365_0827385 3300039437 Bacteria 2750
81 Ga0436365_0924676 3300039437 Bacteria 448697
82 Ga0436360_0793658 3300039438 Bacteria 1942
83 Ga0453683_0203513 3300044673 Bacteria 1257
84 Ga0466966_0015362 3300044684 Bacteria 5063
85 Ga0453684_0116867 3300044712 Bacteria 3228
86 Ga0466968_0008611 3300044735 Bacteria 3910
87 Ga0451576_0140958 3300045051 Bacteria 2514
88 Ga0451576_0226198 3300045051 Bacteria 1954
89 Ga0495629_0256949 3300046459 Bacteria 1201
90 Ga0495638_0050202 3300046460 Bacteria 2606
91 Ga0495594_0069710 3300046499 Bacteria 1953
92 Ga0495606_0001896 3300046507 Bacteria 26105
93 Ga0495668_0002363 3300046616 Bacteria 15699
94 Ga0495686_0033644 3300047472 Bacteria 3307
95 Ga0495626_0000164 3300048091 Bacteria 81489
96 Ga0496109_0000438 3300048912 Bacteria 36175
97 Ga0496125_0034917 3300048928 Bacteria 4423
98 Ga0501037_0032280 3300049573 Bacteria 3867
99 Ga0501047_0007414 3300049581 Bacteria 10320
100 Ga0501047_0008848 3300049581 Bacteria 9498
101 Ga0501047_0030479 3300049581 Bacteria 5200
102 Ga0501048_0024052 3300049582 Bacteria 4448
103 Ga0501067_0066207 3300049583 Bacteria 2000
104 Ga0501069_0030951 3300049585 Bacteria 2941
105 Ga0501070_0166156 3300049586 Bacteria 1818
106 Ga0501073_0011278 3300049589 Bacteria 6539
107 Ga0501074_0018293 3300049590 Bacteria 5090
108 Ga0501257_016292 3300049686 Bacteria 1723
109 Ga0501261_001242 3300049690 Bacteria 3133
110 Ga0501044_0038600 3300049823 Bacteria 4987
111 nmdc:mga05p37_247328_c1 3300050507 Bacteria 2140
112 nmdc:mga09592_12229_c1 3300050508 Bacteria 6988
113 nmdc:mga09592_9464_c1 3300050508 Bacteria 7918
114 nmdc:mga06r32_5956_c1 3300050510 Bacteria 10972
115 nmdc:mga06r32_672769_c1 3300050510 Bacteria 1002
116 nmdc:mga08y16_15459_c1 3300050511 Bacteria 8027
117 nmdc:mga08y16_481442_c1 3300050511 Bacteria 1263
118 nmdc:mga0n895_531957_c1 3300050512 Bacteria 1182
119 nmdc:mga0n895_78243_c1 3300050512 Bacteria 3291
120 nmdc:mga0a205_100624_c1 3300050515 Bacteria 2789
121 Ga0500568_0023656 3300053139 Bacteria 2612
122 2831428994 2831426010 Bacteria 8662725
123 2848698877 2848694841 Bacteria 9205737
124 2849666655 2849660919 Bacteria 8251853
125 2887479487 2887478801 Bacteria 8972725
126 3003004230 3002998708 Bacteria 11715108
127 8001787935 8001781756 Bacteria 9586736
128 8001788462 8001781756 Bacteria 9586736
129 8047711799 8047710418 Bacteria 11023148
130 8053952768 8053945823 Bacteria 8962862
131 Ga0373949_0000081
132 Ga0070683_100015973
133 Ga0070687_100114903
134 Ga0070667_100169981
135 Ga0070714_100221220
136 Ga0070713_100141331
137 Ga0070710_10000470
138 Ga0070701_10033130
139 Ga0070707_100308574
140 Ga0070698_100028990
141 Ga0070679_100058653
142 Ga0070684_100006900
143 Ga0070697_100367127
144 Ga0070696_100622431
145 Ga0070693_100368168
146 Ga0070665_100281097
147 Ga0070704_100021152
148 Ga0068852_100400403
149 Ga0068863_100069173
150 Ga0081455_10020317
151 Ga0081455_10213195
152 Ga0081539_10158216
153 Ga0070715_10025722
154 Ga0075431_100023888
155 Ga0075431_100542715
156 Ga0075431_100545700
157 Ga0075434_100142215
158 Ga0075429_100096032
159 Ga0075429_100113749
160 Ga0079104_1000161
161 Ga0079104_1014828
162 Ga0111539_10532142
163 Ga0111539_10633794
164 Ga0114129_10233627
165 Ga0105248_10177778
166 Ga0105237_10058182
167 Ga0105249_10202208
168 Ga0105239_10198765
169 Ga0213876_10000017
170 Ga0207692_10001187
171 Ga0207642_10269913
172 Ga0207685_10191975
173 Ga0207671_10301105
174 Ga0207662_10107964
175 Ga0207646_10167190
176 Ga0207711_10085432
177 Ga0207661_10015060
178 Ga0207712_10136849
179 Ga0207712_10205078
180 Ga0207708_10105155
181 Ga0209281_1000231
182 Ga0209281_1000950
183 Ga0209281_1016509
184 Ga0268266_10101795
185 Ga0307515_10009595
186 Ga0265338_10037838
187 Ga0316177_1205165
188 Ga0316176_1122259
189 Ga0314311_1164410
190 Ga0316180_1184263
191 Ga0307509_10001582
192 Ga0307509_10074435
193 Ga0307509_10090271
194 Ga0307413_10368135
195 Ga0307415_100216751
196 Ga0307507_10245375
197 Ga0373949_0000144
198 Ga0373941_0001775
199 Ga0373954_0011243
200 Ga0373956_0000395
201 Ga0373927_0000017
202 Ga0373933_0020852
203 Ga0395900_0185461
204 Ga0395898_0263875
205 Ga0395905_0034760
206 Ga0395901_0499083
207 Ga0400483_240400
208 Ga0400487_51633
209 Ga0436365_0151695
210 Ga0436365_0827385
211 Ga0436365_0924676
212 Ga0436360_0793658
213 Ga0453683_0203513
214 Ga0466966_0015362
215 Ga0453684_0116867
216 Ga0466968_0008611
217 Ga0451576_0140958
218 Ga0451576_0226198
219 Ga0495629_0256949
220 Ga0495638_0050202
221 Ga0495594_0069710
222 Ga0495606_0001896
223 Ga0495668_0002363
224 Ga0495686_0033644
225 Ga0495626_0000164
226 Ga0496109_0000438
227 Ga0496125_0034917
228 Ga0501037_0032280
229 Ga0501047_0007414
230 Ga0501047_0008848
231 Ga0501047_0030479
232 Ga0501048_0024052
233 Ga0501067_0066207
234 Ga0501069_0030951
235 Ga0501070_0166156
236 Ga0501073_0011278
237 Ga0501074_0018293
238 Ga0501257_016292
239 Ga0501261_001242
240 Ga0501044_0038600
241 nmdc:mga05p37_247328_c1
242 nmdc:mga09592_12229_c1
243 nmdc:mga09592_9464_c1
244 nmdc:mga06r32_5956_c1
245 nmdc:mga06r32_672769_c1
246 nmdc:mga08y16_15459_c1
247 nmdc:mga08y16_481442_c1
248 nmdc:mga0n895_531957_c1
249 nmdc:mga0n895_78243_c1
250 nmdc:mga0a205_100624_c1
251 Ga0500568_0023656
252 2831428994
253 2848698877
254 2849666655
255 2887479487
256 3003004230
257 8001787935
258 8001788462
259 8047711799
260 8053952768

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF09414

RNA_ligase

RNA ligase

67

260

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
6vtg-assembly4.cif.gz_D naegleria gruberi rna ligase e227a mutant apo 0.7458 28 229
6vtd-assembly1.cif.gz_A naegleria gruberi rna ligase r149a mutant with atp and mn 0.7352 28 229
6vte-assembly1.cif.gz_A naegleria gruberi rna ligase k170m mutant with amp and mn 0.7279 2 229
6vt6-assembly1.cif.gz_A naegleria gruberi rna ligase k170a mutant with atp and mn 0.7258 30 229
6vtb-assembly1.cif.gz_A naegleria gruberi rna ligase k326a mutant with atp and mn 0.7257 30 229
ID Description Score Start End Superfamily
5d1pB03 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.6743 46 150 3.30.470.30
5d1pB03 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.6631 46 150 3.30.470.30
2vugB03 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.6521 46 150 3.30.470.30
2hvrA02 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.6475 44 151 3.30.470.30
af_Q54EG7_220_414_3.30.470.30 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.6442 28 208 3.30.470.30
ID Description Score Start End GO Terms
AF-A0A1Y5X4L0-F1-model_v4 RNA ligase 0.9945 23 251 GO:0016874
AF-A0A848WIC0-F1-model_v4 RNA ligase family protein 0.9792 55 250 GO:0016874
AF-A0A810NRZ8-F1-model_v4 DNA ligase III 0.9748 1 254 GO:0016874
AF-A0A810NRZ8-F1-model_v4 DNA ligase III 0.971 1 254 GO:0016874
AF-A0A316HQ95-F1-model_v4 RNA ligase 0.969 1 246 GO:0016874

Map