F141989

General Info

Members Datasets Scaffolds Average Seq Length
129 109 122 284

Family's Representative Sequence

Representative Sequence 3300025906|Ga0207699_10064602|Ga0207699_100646022
Length 336
Sequence MAGKGNCRGGPNGHKLKREVRAGSARRPDAGHTGPHHRGMSQYAPPMPEPSKVVLITGCSSGIGHATALRLARGGWSVYATARRPEMIADLAEAGCETLALDVTDEQSMRAAVDHVEGAAGAVGVLINNAGYSQSGAIETVPLKAARAQFETNVFGLVRLTQMVLPRMRAQHWGRIVNVGSMGGRLSFPGAGHYHATKHALEAISDAMRFELRGFGIDVVLLEPGLITTEFGETATASIAETSTAANGAQPNAGDPYGEFNTTVGAVTKGAYEGPMRLLGAGPDRVAKTIERVLKRRNPPARITITPSAKLMIGLRRVLPDRAWEAMMRAQFPQPH

Samples

Sample ID Description Type Environment
1 2643221576 Nocardioides sp. Root614 Isolate Unclassified
2 2643221590 Nocardioides sp. Root682 Isolate Unclassified
3 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
21 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
22 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
23 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
24 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
25 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
52 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
53 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
54 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
55 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
56 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
57 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
58 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
59 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
60 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
61 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
62 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
63 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
64 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
65 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
66 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
67 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
68 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
69 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
74 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
75 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
76 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
77 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
78 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
79 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
80 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
81 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
82 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
83 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
84 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
85 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
86 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
87 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
88 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
89 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
90 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
91 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
92 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
93 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
94 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
95 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
96 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
97 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
98 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
99 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
100 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
101 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
102 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
103 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
104 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
105 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
106 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
107 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
108 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
109 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.57
Metatranscriptomes 0
Isolates 5.43

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 6.98
Rhizosphere 86.82
Stem 0
Stem Tuber 0
Unclassified 6.2

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10006931 3300002067 Bacteria 3708
2 Ga0070658_10001272 3300005327 Bacteria 21575
3 Ga0070683_100014641 3300005329 Bacteria 6868
4 Ga0070660_100061360 3300005339 Bacteria 2919
5 Ga0070674_100064589 3300005356 Bacteria 2565
6 Ga0070659_100000051 3300005366 Bacteria 97520
7 Ga0070659_100034146 3300005366 Bacteria 3955
8 Ga0070709_10146585 3300005434 Bacteria 1627
9 Ga0070714_100000243 3300005435 Bacteria 42598
10 Ga0070714_100005156 3300005435 Bacteria 9944
11 Ga0070705_100030559 3300005440 Bacteria 2975
12 Ga0070708_100400659 3300005445 Bacteria 1294
13 Ga0070707_100013268 3300005468 Bacteria 7707
14 Ga0070684_100233368 3300005535 Bacteria 1680
15 Ga0068853_100034264 3300005539 Unclassified 4310
16 Ga0068853_100085590 3300005539 Bacteria 2763
17 Ga0070664_100365274 3300005564 Bacteria 1315
18 Ga0068852_100119865 3300005616 Bacteria 2406
19 Ga0068862_100293619 3300005844 Bacteria 1494
20 Ga0070717_10000028 3300006028 Bacteria 144976
21 Ga0070712_100000005 3300006175 Bacteria 177449
22 Ga0075430_100002862 3300006846 Bacteria 14438
23 Ga0075434_100061741 3300006871 Bacteria 3730
24 Ga0075429_100033458 3300006880 Bacteria 4467
25 Ga0075436_100181147 3300006914 Bacteria 1489
26 Ga0105240_10009846 3300009093 Bacteria 13490
27 Ga0105240_10346415 3300009093 Bacteria 1686
28 Ga0114129_10656652 3300009147 Bacteria 1353
29 Ga0105243_10234479 3300009148 Bacteria 1630
30 Ga0105237_10002209 3300009545 Bacteria 24373
31 Ga0157369_10093360 3300013105 Bacteria 3212
32 Ga0207647_10082048 3300025904 Bacteria 1932
33 Ga0207699_10064602 3300025906 Bacteria 2215
34 Ga0207699_10166773 3300025906 Bacteria 1470
35 Ga0207705_10036486 3300025909 Bacteria 3517
36 Ga0207671_10003008 3300025914 Bacteria 17288
37 Ga0207693_10000023 3300025915 Bacteria 127876
38 Ga0207663_10028218 3300025916 Bacteria 3283
39 Ga0207646_10038489 3300025922 Bacteria 4308
40 Ga0207700_10309975 3300025928 Bacteria 1365
41 Ga0207664_10000013 3300025929 Bacteria 260716
42 Ga0207664_10002348 3300025929 Bacteria 12508
43 Ga0207690_10000064 3300025932 Bacteria 95169
44 Ga0207669_10217417 3300025937 Bacteria 1400
45 Ga0207665_10106217 3300025939 Bacteria 1967
46 Ga0207665_10169389 3300025939 Bacteria 1576
47 Ga0207661_10006600 3300025944 Bacteria 8201
48 Ga0207679_10018133 3300025945 Bacteria 4709
49 Ga0207639_10122170 3300026041 Bacteria 2141
50 Ga0207708_10128593 3300026075 Bacteria 1978
51 Ga0207702_10198774 3300026078 Bacteria 1857
52 Ga0207648_10233002 3300026089 Bacteria 1638
53 Ga0207675_100127957 3300026118 Bacteria 2407
54 Ga0207675_100221316 3300026118 Bacteria 1824
55 Ga0207698_10315936 3300026142 Bacteria 1461
56 Ga0265337_1001635 3300028556 Bacteria 10901
57 Ga0265326_10007343 3300028558 Bacteria 3383
58 Ga0265319_1000886 3300028563 Bacteria 18931
59 Ga0265319_1001042 3300028563 Bacteria 17339
60 Ga0265318_10001684 3300028577 Bacteria 12696
61 Ga0265336_10000002 3300028666 Bacteria 830172
62 Ga0265338_10000001 3300028800 Bacteria 1177449
63 Ga0265324_10010737 3300029957 Bacteria 3515
64 Ga0265340_10000001 3300031247 Bacteria 1647668
65 Ga0265339_10048668 3300031249 Bacteria 2324
66 Ga0265327_10065522 3300031251 Bacteria 1837
67 Ga0307408_100049340 3300031548 Bacteria 3023
68 Ga0265314_10142463 3300031711 Bacteria 1480
69 Ga0316578_10284428 3300031728 Bacteria 990
70 Ga0307413_10014139 3300031824 Bacteria 4041
71 Ga0307410_10015113 3300031852 Bacteria 4569
72 Ga0307416_100018379 3300032002 Bacteria 4923
73 Ga0307416_100189322 3300032002 Bacteria 1938
74 Ga0307414_10072752 3300032004 Bacteria 2484
75 Ga0307415_100048789 3300032126 Bacteria 2858
76 Ga0373925_0028025 3300037068 Bacteria 4125
77 Ga0395900_0205622 3300037418 Bacteria 1990
78 Ga0395900_0743082 3300037418 Bacteria 912
79 Ga0395898_0200005 3300037466 Bacteria 1908
80 Ga0395901_0004053 3300038443 Bacteria 14750
81 Ga0400489_62349 3300039093 Bacteria 1952
82 Ga0436365_0905595 3300039437 Bacteria 4244
83 Ga0436363_0817210 3300039450 Bacteria 5904
84 Ga0451833_0468897 3300041491 Bacteria 6795
85 Ga0451839_0155306 3300041496 Bacteria 3058
86 Ga0466966_0042694 3300044684 Bacteria 2909
87 Ga0466961_0023519 3300044693 Bacteria 3964
88 Ga0466961_0136305 3300044693 Bacteria 1538
89 Ga0466961_0176189 3300044693 Bacteria 1329
90 Ga0466961_0264458 3300044693 Archaea 1054
91 Ga0466963_0329916 3300044694 Archaea 1074
92 Ga0466963_0334173 3300044694 Bacteria 1067
93 Ga0466970_0111807 3300044765 Archaea 1492
94 Ga0466960_0032787 3300044901 Bacteria 2409
95 Ga0466959_0002810 3300045049 Bacteria 11209
96 Ga0466959_0015451 3300045049 Bacteria 5562
97 Ga0466958_0005729 3300045836 Bacteria 6712
98 Ga0466958_0011416 3300045836 Bacteria 5003
99 Ga0466967_0205359 3300045976 Bacteria 1867
100 Ga0466967_0388594 3300045976 Bacteria 1356
101 Ga0495618_0000030 3300046514 Bacteria 108007
102 Ga0495630_0001031 3300046517 Bacteria 19246
103 Ga0495645_0000021 3300046543 Bacteria 137604
104 Ga0495657_0000017 3300046675 Bacteria 174558
105 Ga0495604_0002295 3300047317 Bacteria 15322
106 Ga0495672_0007323 3300047320 Bacteria 8322
107 Ga0495679_063871 3300047446 Bacteria 1074
108 Ga0495684_0010858 3300047471 Bacteria 7042
109 Ga0495684_0022716 3300047471 Bacteria 4825
110 Ga0496100_0002490 3300048903 Bacteria 9370
111 Ga0496101_0001532 3300048904 Bacteria 13847
112 Ga0496102_0225949 3300048905 Bacteria 1765
113 Ga0496108_0140546 3300048911 Bacteria 2080
114 Ga0496109_0031004 3300048912 Bacteria 4794
115 Ga0496112_0000295 3300048915 Bacteria 32306
116 Ga0496113_0009655 3300048916 Bacteria 6338
117 Ga0496113_0032516 3300048916 Bacteria 3792
118 Ga0501042_0218905 3300049578 Bacteria 1373
119 nmdc:mga09592_16001_c1 3300050508 Bacteria 6130
120 nmdc:mga0n895_93860_c1 3300050512 Bacteria 3004
121 nmdc:mga08x19_76944_c1 3300050514 Bacteria 2184
122 Ga0495601_0013119 3300053077 Bacteria 4981

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005468 Ga0070707_100013268 Ga0070707_1000132683 260
2 3300025922 Ga0207646_10038489 Ga0207646_100384894 260
3 iso_pu_bacteria 2643221576 2643889210 266
4 iso_pu_bacteria 2643221590 2643958265 266
5 3300044693 Ga0466961_0176189 Ga0466961_0176189_330_1184 268
6 3300044901 Ga0466960_0032787 Ga0466960_0032787_1363_2190 268
7 3300025904 Ga0207647_10082048 Ga0207647_100820482 269
8 3300006846 Ga0075430_100002862 Ga0075430_10000286210 270
9 3300025928 Ga0207700_10309975 Ga0207700_103099751 271
10 3300037418 Ga0395900_0205622 Ga0395900_0205622_1107_1943 271
11 3300038443 Ga0395901_0004053 Ga0395901_0004053_1286_2122 271
12 3300044693 Ga0466961_0264458 Ga0466961_0264458_128_961 271
13 3300044694 Ga0466963_0329916 Ga0466963_0329916_214_1047 271
14 3300044765 Ga0466970_0111807 Ga0466970_0111807_455_1288 271
15 3300045049 Ga0466959_0015451 Ga0466959_0015451_2652_3485 271
16 3300045836 Ga0466958_0011416 Ga0466958_0011416_2819_3652 271
17 3300045976 Ga0466967_0388594 Ga0466967_0388594_296_1129 271
18 3300047317 Ga0495604_0002295 Ga0495604_0002295_13458_14297 271
19 3300005356 Ga0070674_100064589 Ga0070674_1000645894 272
20 3300005366 Ga0070659_100034146 Ga0070659_1000341466 272
21 3300005844 Ga0068862_100293619 Ga0068862_1002936192 272
22 3300009147 Ga0114129_10656652 Ga0114129_106566522 272
23 3300009148 Ga0105243_10234479 Ga0105243_102344793 272
24 3300025937 Ga0207669_10217417 Ga0207669_102174172 272
25 3300026075 Ga0207708_10128593 Ga0207708_101285933 272
26 3300026089 Ga0207648_10233002 Ga0207648_102330022 272
27 3300026118 Ga0207675_100127957 Ga0207675_1001279575 272
28 3300032002 Ga0307416_100189322 Ga0307416_1001893223 272
29 3300032004 Ga0307414_10072752 Ga0307414_100727523 272
30 3300039437 Ga0436365_0905595 Ga0436365_0905595_1115_1945 272
31 3300041491 Ga0451833_0468897 Ga0451833_0468897_4598_5440 272
32 3300041496 Ga0451839_0155306 Ga0451839_0155306_981_1823 272
33 3300044684 Ga0466966_0042694 Ga0466966_0042694_653_1486 272
34 3300044693 Ga0466961_0023519 Ga0466961_0023519_676_1518 272
35 3300044693 Ga0466961_0136305 Ga0466961_0136305_19_852 272
36 3300045049 Ga0466959_0002810 Ga0466959_0002810_5472_6302 272
37 3300005327 Ga0070658_10001272 Ga0070658_100012724 273
38 3300005539 Ga0068853_100034264 Ga0068853_1000342647 273
39 3300005616 Ga0068852_100119865 Ga0068852_1001198653 273
40 3300009093 Ga0105240_10346415 Ga0105240_103464152 273
41 3300013105 Ga0157369_10093360 Ga0157369_100933602 273
42 3300025909 Ga0207705_10036486 Ga0207705_100364863 273
43 3300026142 Ga0207698_10315936 Ga0207698_103159362 273
44 3300037418 Ga0395900_0743082 Ga0395900_0743082_31_876 273
45 3300039450 Ga0436363_0817210 Ga0436363_0817210_3695_4537 273
46 3300045976 Ga0466967_0205359 Ga0466967_0205359_283_1125 273
47 iso_pu_bacteria 2791355406 2793983859 273
48 iso_pu_bacteria 8047893842 8047895036 273
49 iso_pu_bacteria 8048356638 8048364013 273
50 iso_pu_bacteria 8048369669 8048372063 273
51 iso_pu_bacteria 8048379754 8048380997 273
52 3300005539 Ga0068853_100085590 Ga0068853_1000855902 274
53 3300006871 Ga0075434_100061741 Ga0075434_1000617412 274
54 3300025939 Ga0207665_10106217 Ga0207665_101062172 274
55 3300026041 Ga0207639_10122170 Ga0207639_101221702 274
56 3300037466 Ga0395898_0200005 Ga0395898_0200005_440_1288 274
57 3300050512 nmdc:mga0n895_93860_c1 nmdc:mga0n895_93860_c1_832_1680 274
58 3300005435 Ga0070714_100000243 Ga0070714_10000024337 275
59 3300025929 Ga0207664_10000013 Ga0207664_10000013183 275
60 3300045836 Ga0466958_0005729 Ga0466958_0005729_4413_5261 275
61 3300046514 Ga0495618_0000030 Ga0495618_0000030_45373_46218 275
62 3300046517 Ga0495630_0001031 Ga0495630_0001031_14943_15788 275
63 3300046543 Ga0495645_0000021 Ga0495645_0000021_92729_93574 275
64 3300046675 Ga0495657_0000017 Ga0495657_0000017_77179_78024 275
65 3300047471 Ga0495684_0010858 Ga0495684_0010858_1905_2750 275
66 3300048915 Ga0496112_0000295 Ga0496112_0000295_21674_22525 275
67 3300053077 Ga0495601_0013119 Ga0495601_0013119_329_1228 275
68 3300005445 Ga0070708_100400659 Ga0070708_1004006591 276
69 3300026078 Ga0207702_10198774 Ga0207702_101987742 276
70 3300031728 Ga0316578_10284428 Ga0316578_102844281 276
71 3300039093 Ga0400489_62349 Ga0400489_62349_942_1805 276
72 3300050514 nmdc:mga08x19_76944_c1 nmdc:mga08x19_76944_c1_572_1420 276
73 3300002067 JGI24735J21928_10006931 JGI24735J21928_100069314 277
74 3300005329 Ga0070683_100014641 Ga0070683_1000146412 277
75 3300005339 Ga0070660_100061360 Ga0070660_1000613602 277
76 3300005366 Ga0070659_100000051 Ga0070659_1000000514 277
77 3300005434 Ga0070709_10146585 Ga0070709_101465852 277
78 3300005435 Ga0070714_100005156 Ga0070714_1000051563 277
79 3300005440 Ga0070705_100030559 Ga0070705_1000305592 277
80 3300005535 Ga0070684_100233368 Ga0070684_1002333682 277
81 3300005564 Ga0070664_100365274 Ga0070664_1003652742 277
82 3300006028 Ga0070717_10000028 Ga0070717_1000002898 277
83 3300006175 Ga0070712_100000005 Ga0070712_10000000577 277
84 3300006880 Ga0075429_100033458 Ga0075429_1000334583 277
85 3300006914 Ga0075436_100181147 Ga0075436_1001811472 277
86 3300009093 Ga0105240_10009846 Ga0105240_100098465 277
87 3300009545 Ga0105237_10002209 Ga0105237_1000220912 277
88 3300025906 Ga0207699_10064602 Ga0207699_100646022 277
89 3300025906 Ga0207699_10166773 Ga0207699_101667732 277
90 3300025914 Ga0207671_10003008 Ga0207671_100030088 277
91 3300025915 Ga0207693_10000023 Ga0207693_1000002397 277
92 3300025916 Ga0207663_10028218 Ga0207663_100282183 277
93 3300025929 Ga0207664_10002348 Ga0207664_100023483 277
94 3300025932 Ga0207690_10000064 Ga0207690_100000643 277
95 3300025939 Ga0207665_10169389 Ga0207665_101693892 277
96 3300025944 Ga0207661_10006600 Ga0207661_100066002 277
97 3300025945 Ga0207679_10018133 Ga0207679_100181331 277
98 3300026118 Ga0207675_100221316 Ga0207675_1002213162 277
99 3300028556 Ga0265337_1001635 Ga0265337_10016355 277
100 3300028558 Ga0265326_10007343 Ga0265326_100073432 277
101 3300028563 Ga0265319_1000886 Ga0265319_100088610 277
102 3300028563 Ga0265319_1001042 Ga0265319_100104215 277
103 3300028577 Ga0265318_10001684 Ga0265318_100016844 277
104 3300028666 Ga0265336_10000002 Ga0265336_1000000212 277
105 3300028800 Ga0265338_10000001 Ga0265338_10000001803 277
106 3300029957 Ga0265324_10010737 Ga0265324_100107373 277
107 3300031247 Ga0265340_10000001 Ga0265340_10000001801 277
108 3300031249 Ga0265339_10048668 Ga0265339_100486683 277
109 3300031251 Ga0265327_10065522 Ga0265327_100655222 277
110 3300031548 Ga0307408_100049340 Ga0307408_1000493403 277
111 3300031711 Ga0265314_10142463 Ga0265314_101424632 277
112 3300031824 Ga0307413_10014139 Ga0307413_100141393 277
113 3300031852 Ga0307410_10015113 Ga0307410_100151135 277
114 3300032002 Ga0307416_100018379 Ga0307416_1000183793 277
115 3300032126 Ga0307415_100048789 Ga0307415_1000487893 277
116 3300037068 Ga0373925_0028025 Ga0373925_0028025_1972_2850 277
117 3300044694 Ga0466963_0334173 Ga0466963_0334173_29_892 277
118 3300047320 Ga0495672_0007323 Ga0495672_0007323_2949_3812 277
119 3300047446 Ga0495679_063871 Ga0495679_063871_58_909 277
120 3300047471 Ga0495684_0022716 Ga0495684_0022716_3867_4718 277
121 3300048903 Ga0496100_0002490 Ga0496100_0002490_656_1519 277
122 3300048904 Ga0496101_0001532 Ga0496101_0001532_8082_8945 277
123 3300048905 Ga0496102_0225949 Ga0496102_0225949_300_1151 277
124 3300048911 Ga0496108_0140546 Ga0496108_0140546_295_1167 277
125 3300048912 Ga0496109_0031004 Ga0496109_0031004_1914_2786 277
126 3300048916 Ga0496113_0009655 Ga0496113_0009655_3174_4040 277
127 3300048916 Ga0496113_0032516 Ga0496113_0032516_1605_2480 277
128 3300049578 Ga0501042_0218905 Ga0501042_0218905_393_1259 277
129 3300050508 nmdc:mga09592_16001_c1 nmdc:mga09592_16001_c1_1220_2101 277

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

52

240

0.95

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

58

257

0.93

PF08659

KR

KR domain

52

223

0.9

PF13460

NAD_binding_10

NAD(P)H-binding

58

252

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
8g9v-assembly4.cif.gz_G crystal structures of 17-beta-hydroxysteroid dehydrogenase 13 0.9302 4 180
8g9m-assembly1.cif.gz_A acinetobacter_baumannii short-chain dehydrogenase 0.9279 3 171
8jfi-assembly2.cif.gz_E crystal structure of 3-oxoacyl-acp reductase fabg in complex with nadp+ and 3-keto-hexanoyl-acp from helicobacter pylori 0.9256 3 176
1w8d-assembly1.cif.gz_B binary structure of human decr. 0.9255 5 177
3v2h-assembly1.cif.gz_B the crystal structure of d-beta-hydroxybutyrate dehydrogenase from sinorhizobium meliloti 0.9241 5 176
ID Description Score Start End Superfamily
af_F4J128_251_373_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9723 80 179 3.40.50.720
af_A0A0R0JBZ9_6_171_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9556 76 186 3.40.50.720
af_A0A0N7KIR0_69_250_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9439 5 151 3.40.50.720
af_Q869Y3_41_268_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.942 6 176 3.40.50.720
6d9yB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9375 5 173 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A660LFR5-F1-model_v4 NADP-dependent 3-hydroxy acid dehydrogenase YdfG 0.9726 4 274 GO:0016491
AF-A0A2E5YT81-F1-model_v4 Short-chain dehydrogenase/reductase 0.9697 3 277 GO:0016491
AF-A0A7W1ITS8-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9632 2 274 GO:0016491
AF-A0A538A6F2-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9606 90 277 GO:0016491
AF-A0A143PST4-F1-model_v4 Gluconate 5-dehydrogenase (EC 1.1.1.69) 0.9604 4 173 GO:0008874

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pLDDT pTM Quality
89.55 0.9 High
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Predicted Structure (AlphaFold2)

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