F136633

General Info

Members Datasets Scaffolds Average Seq Length
128 98 256 755

Family's Representative Sequence

Representative Sequence 3300005327|Ga0070658_10035609|Ga0070658_100356093
Length 784
Sequence MNEAETRAEHIDPALQVAGWGVVEGSRVRREFPITPGRIEGAGRRGKALTADYVLEYRNTKLAIIEAKAWHEPPTLGVAQAKNYADKTAIRYTYSSNGQVIYGIDMQTGKEGEIERYPSPEELWDLTFAKPIDQRGYGLQFLTSATNDWRNRFAAIPYPDKSGSWSIRYYQETAVNRVLEAIEDGKDRILLTLATGTGKTSIAFQIAWKLFQARWNLTDWKTGAVPTRRPRILFLADRNNLADQAYNDFTSFTAFSEDALARIKPDEIRKKGKVPKNASVFFTIFQTFMSGQDKDGNPAPYFGEYPPDFFDFIVIDECHRGGANDESTWRGIMEYFAPAVQLGLTATPKRKENTDTYAYFGEPVYIYSLKEGINDGFLTPFRVKQIATTLDEYVYTPDDNVVEGEVEAGKRYIESDFNKIIEIKEREAHRVKLFMDQIDQREKTLVFCATQNHALIVRDLINQMKTSTDPNYCHRVTADDGELGEQYLRAFQDNEKTIPTILTTSQKLSTGVDARNIRNIVLMRPIKTMIEFKQIIGRGTRLYDGKDYFTIYDFVKAYHHFSDPEWDGEPIEPEPCKKCGFNPCQCVKTAKVKLADGKERAIQHMVCTSFWHPDGTPMSANQFMEMLFGKLPEFFKDEDELRALWSAPDTRKKLLNGLAEKGFGHDQLIEMQKIIDAEKSDLFDVLAYVAYALPPLNREERATRARVAISTHFNNKQQAFLDFVLAHYVNVGVEELDQEKLTPLLRLKYHNSISDALADLGRAEDIGQVFAGFQKYLYETGAAG

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
4 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
5 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
6 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
7 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
16 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
20 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
21 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
22 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
23 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
29 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
30 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
31 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
32 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
33 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
34 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
35 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
49 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
50 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
51 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
52 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
53 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
54 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
55 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
56 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
57 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
58 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
59 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
60 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
61 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
62 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
63 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
64 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
65 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
66 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
67 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
68 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
69 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
74 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
75 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
76 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
77 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
78 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
79 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
80 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
81 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
82 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
83 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
87 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
88 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
89 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
90 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
91 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
92 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
93 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
94 2585428058 Methylibium sp. CF468 Isolate Rhizosphere
95 2721755755 Bradyrhizobium icense LMTR 13 Isolate Nodule
96 2818991272 Rhizobium sp. SLBN-4 Isolate Unclassified
97 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
98 2939622612 Stenotrophomonas sp. 2619 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.09
Metatranscriptomes 0
Isolates 3.91

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.72
Nodule 0.78
Rhizoplane 0
Rhizosphere 80.47
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10035609 3300005327 Bacteria 4010
2 rootH2_10000533 3300003320 Bacteria 48184
3 Ga0055526_1000257 3300003771 Bacteria 44910
4 Ga0055537_1000199 3300003773 Bacteria 45153
5 Ga0055524_1000321 3300003775 Bacteria 45153
6 Ga0055534_1000190 3300003784 Bacteria 45153
7 Ga0055528_1000257 3300003790 Bacteria 45153
8 Ga0070680_100000950 3300005336 Bacteria 20520
9 Ga0070681_10001571 3300005458 Bacteria 20288
10 Ga0070706_100010333 3300005467 Bacteria 8671
11 Ga0070707_100000723 3300005468 Bacteria 32932
12 Ga0070698_100002155 3300005471 Bacteria 21849
13 Ga0070698_100045956 3300005471 Bacteria 4467
14 Ga0070699_100000192 3300005518 Bacteria 59837
15 Ga0070679_100000154 3300005530 Bacteria 55597
16 Ga0068853_100020468 3300005539 Bacteria 5502
17 Ga0070696_100000004 3300005546 Bacteria 126811
18 Ga0070664_100011982 3300005564 Bacteria 7041
19 Ga0068852_100026180 3300005616 Bacteria 4737
20 Ga0075428_100014902 3300006844 Bacteria 8638
21 Ga0075436_100000109 3300006914 Bacteria 48509
22 Ga0075435_100006449 3300007076 Bacteria 8299
23 Ga0075435_100009962 3300007076 Bacteria 6924
24 Ga0099795_10000011 3300007788 Bacteria 78558
25 Ga0105251_10004271 3300009011 Bacteria 9825
26 Ga0105240_10000857 3300009093 Bacteria 54806
27 Ga0105240_10020371 3300009093 Bacteria 8849
28 Ga0111539_10000741 3300009094 Bacteria 42349
29 Ga0099796_10000058 3300010159 Bacteria 19986
30 Ga0157369_10063301 3300013105 Bacteria 3985
31 Ga0157374_10000028 3300013296 Bacteria 213725
32 Ga0157376_10000742 3300014969 Bacteria 21200
33 Ga0209565_1000141 3300025263 Bacteria 99867
34 Ga0209673_1000467 3300025273 Bacteria 68032
35 Ga0209675_1000244 3300025291 Bacteria 54148
36 Ga0209564_1000940 3300025295 Bacteria 37733
37 Ga0209256_1000223 3300025299 Bacteria 104801
38 Ga0207713_1000914 3300025735 Bacteria 26549
39 Ga0207705_10026716 3300025909 Bacteria 4115
40 Ga0207684_10007936 3300025910 Bacteria 9483
41 Ga0207707_10000013 3300025912 Bacteria 264517
42 Ga0207695_10000263 3300025913 Bacteria 132894
43 Ga0207695_10022409 3300025913 Bacteria 7169
44 Ga0207660_10000682 3300025917 Bacteria 22722
45 Ga0207652_10000259 3300025921 Bacteria 55289
46 Ga0207646_10002120 3300025922 Bacteria 23745
47 Ga0207689_10002318 3300025942 Bacteria 17841
48 Ga0207679_10008695 3300025945 Bacteria 6474
49 Ga0207639_10039857 3300026041 Bacteria 3503
50 Ga0207698_10088891 3300026142 Bacteria 2521
51 Ga0209179_1000037 3300027512 Bacteria 30658
52 Ga0265334_10005211 3300028573 Bacteria 5697
53 Ga0265318_10024887 3300028577 Bacteria 2369
54 Ga0265323_10009838 3300028653 Bacteria 3890
55 Ga0265322_10003891 3300028654 Bacteria 4480
56 Ga0307515_10111203 3300028794 Bacteria 3199
57 Ga0265324_10003253 3300029957 Bacteria 7824
58 Ga0265330_10000563 3300031235 Bacteria 24181
59 Ga0265330_10012861 3300031235 Bacteria 3906
60 Ga0265329_10003032 3300031242 Bacteria 7457
61 Ga0265339_10000020 3300031249 Bacteria 175703
62 Ga0265331_10008962 3300031250 Bacteria 5655
63 Ga0265331_10015146 3300031250 Bacteria 4082
64 Ga0265327_10000116 3300031251 Bacteria 173745
65 Ga0265327_10006234 3300031251 Bacteria 9607
66 Ga0265327_10024468 3300031251 Bacteria 3548
67 Ga0265316_10000573 3300031344 Bacteria 41152
68 Ga0265316_10005856 3300031344 Bacteria 11846
69 Ga0265316_10057607 3300031344 Bacteria 3029
70 Ga0265316_10067068 3300031344 Bacteria 2775
71 Ga0307513_10006976 3300031456 Bacteria 14690
72 Ga0307408_100000036 3300031548 Bacteria 197635
73 Ga0307508_10001315 3300031616 Bacteria 28115
74 Ga0307514_10005296 3300031649 Bacteria 11575
75 Ga0265314_10035798 3300031711 Bacteria 3615
76 Ga0265342_10000996 3300031712 Bacteria 27934
77 Ga0265342_10010181 3300031712 Bacteria 6549
78 Ga0307516_10002552 3300031730 Bacteria 24210
79 Ga0307414_10014753 3300032004 Bacteria 4696
80 Ga0373924_0010633 3300035410 Bacteria 3402
81 Ga0395899_0008660 3300037312 Bacteria 7828
82 Ga0395900_0016435 3300037418 Bacteria 7545
83 Ga0395898_0017808 3300037466 Bacteria 7248
84 Ga0395905_0000395 3300037471 Bacteria 61787
85 Ga0395905_0011524 3300037471 Bacteria 8543
86 Ga0450904_000818 3300042139 Bacteria 5164
87 Ga0451577_0000001 3300042876 Bacteria 2461803
88 Ga0451577_0000002 3300042876 Bacteria 1731375
89 Ga0451577_0000702 3300042876 Bacteria 52353
90 Ga0451577_0028087 3300042876 Bacteria 5090
91 Ga0453683_0000011 3300044673 Bacteria 412765
92 Ga0453683_0000034 3300044673 Bacteria 235218
93 Ga0453683_0000315 3300044673 Bacteria 59982
94 Ga0453683_0002397 3300044673 Bacteria 14632
95 Ga0453684_0000002 3300044712 Bacteria 1731375
96 Ga0453684_0000361 3300044712 Bacteria 188097
97 Ga0453684_0002686 3300044712 Bacteria 42328
98 Ga0453684_0005573 3300044712 Bacteria 24814
99 Ga0453684_0064736 3300044712 Bacteria 4668
100 Ga0453684_0080779 3300044712 Bacteria 4058
101 Ga0466957_0002951 3300044842 Bacteria 9222
102 Ga0451576_0000004 3300045051 Bacteria 1312238
103 Ga0451576_0000107 3300045051 Bacteria 212456
104 Ga0451576_0002446 3300045051 Bacteria 27697
105 Ga0451576_0018780 3300045051 Bacteria 7560
106 Ga0451576_0027693 3300045051 Bacteria 6084
107 Ga0495585_0000337 3300046492 Bacteria 45680
108 Ga0495680_0012133 3300047322 Bacteria 7603
109 Ga0496122_0010434 3300048925 Bacteria 9576
110 Ga0496123_0012107 3300048926 Bacteria 7390
111 Ga0501032_0013168 3300049569 Bacteria 5886
112 Ga0501034_0049273 3300049571 Bacteria 4251
113 Ga0501038_0001271 3300049574 Bacteria 22890
114 Ga0501229_000865 3300049706 Bacteria 3425
115 nmdc:mga0k408_50783_c1 3300050493 Bacteria 2401
116 nmdc:mga08y16_4055_c1 3300050511 Bacteria 15288
117 nmdc:mga0rr50_23409_c1 3300050513 Bacteria 4259
118 nmdc:mga0rr50_4230_c1 3300050513 Bacteria 8395
119 nmdc:mga08x19_44_c1 3300050514 Bacteria 147889
120 Ga0500594_0000891 3300053118 Bacteria 6404
121 Ga0500604_0000301 3300053151 Bacteria 13749
122 Ga0500604_0001381 3300053151 Bacteria 6765
123 Ga0500616_0003240 3300053153 Bacteria 12597
124 2587733613 2585428058 Bacteria 6853932
125 2723849003 2721755755 Bacteria 8322773
126 2819241936 2818991272 Bacteria 4622173
127 2883295841 2883291878 Bacteria 5894118
128 2939625060 2939622612 Bacteria 4698046
129 Ga0070658_10035609
130 rootH2_10000533
131 Ga0055526_1000257
132 Ga0055537_1000199
133 Ga0055524_1000321
134 Ga0055534_1000190
135 Ga0055528_1000257
136 Ga0070680_100000950
137 Ga0070681_10001571
138 Ga0070706_100010333
139 Ga0070707_100000723
140 Ga0070698_100002155
141 Ga0070698_100045956
142 Ga0070699_100000192
143 Ga0070679_100000154
144 Ga0068853_100020468
145 Ga0070696_100000004
146 Ga0070664_100011982
147 Ga0068852_100026180
148 Ga0075428_100014902
149 Ga0075436_100000109
150 Ga0075435_100006449
151 Ga0075435_100009962
152 Ga0099795_10000011
153 Ga0105251_10004271
154 Ga0105240_10000857
155 Ga0105240_10020371
156 Ga0111539_10000741
157 Ga0099796_10000058
158 Ga0157369_10063301
159 Ga0157374_10000028
160 Ga0157376_10000742
161 Ga0209565_1000141
162 Ga0209673_1000467
163 Ga0209675_1000244
164 Ga0209564_1000940
165 Ga0209256_1000223
166 Ga0207713_1000914
167 Ga0207705_10026716
168 Ga0207684_10007936
169 Ga0207707_10000013
170 Ga0207695_10000263
171 Ga0207695_10022409
172 Ga0207660_10000682
173 Ga0207652_10000259
174 Ga0207646_10002120
175 Ga0207689_10002318
176 Ga0207679_10008695
177 Ga0207639_10039857
178 Ga0207698_10088891
179 Ga0209179_1000037
180 Ga0265334_10005211
181 Ga0265318_10024887
182 Ga0265323_10009838
183 Ga0265322_10003891
184 Ga0307515_10111203
185 Ga0265324_10003253
186 Ga0265330_10000563
187 Ga0265330_10012861
188 Ga0265329_10003032
189 Ga0265339_10000020
190 Ga0265331_10008962
191 Ga0265331_10015146
192 Ga0265327_10000116
193 Ga0265327_10006234
194 Ga0265327_10024468
195 Ga0265316_10000573
196 Ga0265316_10005856
197 Ga0265316_10057607
198 Ga0265316_10067068
199 Ga0307513_10006976
200 Ga0307408_100000036
201 Ga0307508_10001315
202 Ga0307514_10005296
203 Ga0265314_10035798
204 Ga0265342_10000996
205 Ga0265342_10010181
206 Ga0307516_10002552
207 Ga0307414_10014753
208 Ga0373924_0010633
209 Ga0395899_0008660
210 Ga0395900_0016435
211 Ga0395898_0017808
212 Ga0395905_0000395
213 Ga0395905_0011524
214 Ga0450904_000818
215 Ga0451577_0000001
216 Ga0451577_0000002
217 Ga0451577_0000702
218 Ga0451577_0028087
219 Ga0453683_0000011
220 Ga0453683_0000034
221 Ga0453683_0000315
222 Ga0453683_0002397
223 Ga0453684_0000002
224 Ga0453684_0000361
225 Ga0453684_0002686
226 Ga0453684_0005573
227 Ga0453684_0064736
228 Ga0453684_0080779
229 Ga0466957_0002951
230 Ga0451576_0000004
231 Ga0451576_0000107
232 Ga0451576_0002446
233 Ga0451576_0018780
234 Ga0451576_0027693
235 Ga0495585_0000337
236 Ga0495680_0012133
237 Ga0496122_0010434
238 Ga0496123_0012107
239 Ga0501032_0013168
240 Ga0501034_0049273
241 Ga0501038_0001271
242 Ga0501229_000865
243 nmdc:mga0k408_50783_c1
244 nmdc:mga08y16_4055_c1
245 nmdc:mga0rr50_23409_c1
246 nmdc:mga0rr50_4230_c1
247 nmdc:mga08x19_44_c1
248 Ga0500594_0000891
249 Ga0500604_0000301
250 Ga0500604_0001381
251 Ga0500616_0003240
252 2587733613
253 2723849003
254 2819241936
255 2883295841
256 2939625060

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08463

EcoEI_R_C

EcoEI R protein C-terminal

621

778

0.96

PF04851

ResIII

Type III restriction enzyme, res subunit

164

350

0.92

PF00270

DEAD

DEAD/DEAH box helicase

168

356

0.81

PF18766

SWI2_SNF2

SWI2/SNF2 ATPase

170

403

0.8

PF00271

Helicase_C

Helicase conserved C-terminal domain

427

543

0.72

Structural Annotation

Top 5 Hits

ID Description Score Start End
3h1t-assembly1.cif.gz_A the fragment structure of a putative hsdr subunit of a type i restriction enzyme from vibrio vulnificus yj016 0.8446 1 549
3h1t-assembly1.cif.gz_A the fragment structure of a putative hsdr subunit of a type i restriction enzyme from vibrio vulnificus yj016 0.8151 1 549
5jxt-assembly1.cif.gz_C crystal structure of mtiswi bound with histone h4 tail 0.7639 405 533
5jxt-assembly1.cif.gz_E crystal structure of mtiswi bound with histone h4 tail 0.7609 405 533
5gn1-assembly3.cif.gz_C crystal structure of the c-terminal part of fun30 atpase domain 0.7591 405 534
ID Description Score Start End Superfamily
3h1tA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9341 142 345 3.40.50.300
3h1tA01 Alpha Beta;Alpha-Beta Complex;tt1808, chain A; 0.931 1 127 3.90.1570.30
3h1tA01 Alpha Beta;Alpha-Beta Complex;tt1808, chain A; 0.8712 1 127 3.90.1570.30
3h1tA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8645 142 345 3.40.50.300
af_Q1MTR1_203_383_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8349 405 540 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A522UAH2-F1-model_v4 Restriction endonuclease subunit R 0.9888 1 203 GO:0003677
GO:0004519
GO:0005524
GO:0005829
AF-K2DHP6-F1-model_v4 Type I restriction-modification system, R subunit 0.9812 614 763 GO:0003677
GO:0003824
GO:0006304
AF-A0A2M7W0U1-F1-model_v4 Restriction endonuclease subunit R 0.9799 1 237 GO:0003677
GO:0004519
GO:0005524
GO:0005829
AF-A0A2S7XM43-F1-model_v4 Restriction endonuclease subunit R 0.9797 634 762 GO:0003677
GO:0004519
GO:0006304
AF-A0A522UAH2-F1-model_v4 Restriction endonuclease subunit R 0.9792 1 203 GO:0003677
GO:0004519
GO:0005524
GO:0005829

Map