F134609

General Info

Members Datasets Scaffolds Average Seq Length
127 100 254 401

Family's Representative Sequence

Representative Sequence 3300026035|Ga0207703_10061156|Ga0207703_100611563
Length 458
Sequence VNKARVSNGAVKQGGTASLVEGPCKHLKEFLALLVVCKDFLIVRKVPHMTASDEKQGYFGEFGGRYVPEMLVPALEELEAAFEEAKRDSEFEGEFAELLSNFAGRPTPLTYARRLTEELGGAKIYLKNEGLNITGAHKITHCLGQVLLARRMGKKRLIAETGAGQHGVATATVAAKMGMECTVFMGEVDMERQRPNVFLMEWLGAKVVPVNYGGRTLKDAVNAAIKDWTWHAADTYYLLGSALGPHPYPSMVKYFQSVVSREIRAQLEAAEGKLPDYVLACVGGGSNAIGAFADFLDEPSVKLIGVEAGGRGSRVGEHARRFPGGATGVVEGYKSVFLQDDDGQLSPTHSISAGLDYPGIGPELAHLQAQGRVSFTSATDEAVLLALDLVAKREGIIAALESSHALAEAVRLAPTLSRDQVMVVNVSGRGDKDIFILARALGDASFRAFLTQEEKRYE

Samples

Sample ID Description Type Environment
1 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
9 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
10 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
11 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
15 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
16 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
17 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
18 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
19 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
20 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
21 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
22 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
23 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
34 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
35 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
36 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
37 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
38 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
39 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
40 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
41 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
42 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
43 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
44 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
45 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
46 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
47 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
48 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
49 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
50 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
51 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
52 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
53 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
54 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
55 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
56 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
57 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
58 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
59 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
60 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
61 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
62 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
63 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
64 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
65 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
68 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
69 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
70 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
71 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
72 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
75 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
76 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
77 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
78 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
79 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
80 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
81 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
82 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
83 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
84 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
85 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
86 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
87 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
88 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
89 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
90 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
91 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
92 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
93 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
94 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
95 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
96 2855683550 Micromonospora sp. RP3T Isolate Unclassified
97 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
98 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
99 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
100 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.46
Metatranscriptomes 9.45
Isolates 7.09

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.94
Nodule 0
Rhizoplane 0
Rhizosphere 88.98
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207703_10061156 3300026035 Bacteria 3082
2 Ga0070683_100028632 3300005329 Bacteria 5036
3 Ga0070670_100013050 3300005331 Bacteria 7115
4 Ga0068869_100057678 3300005334 Bacteria 2836
5 Ga0070691_10029615 3300005341 Bacteria 2562
6 Ga0070661_100074553 3300005344 Bacteria 2499
7 Ga0070714_100166284 3300005435 Bacteria 1999
8 Ga0070686_100001511 3300005544 Bacteria 13078
9 Ga0068855_100012294 3300005563 Bacteria 10343
10 Ga0068855_100066433 3300005563 Bacteria 4205
11 Ga0068857_100043229 3300005577 Bacteria 3997
12 Ga0068854_100000039 3300005578 Bacteria 94407
13 Ga0068856_100121877 3300005614 Bacteria 2609
14 Ga0068859_100030423 3300005617 Bacteria 5417
15 Ga0075364_10000215 3300006051 Bacteria 27260
16 Ga0075428_100024794 3300006844 Bacteria 6635
17 Ga0075429_100094516 3300006880 Bacteria 2607
18 Ga0097620_100030423 3300006931 Bacteria 5417
19 Ga0157374_10013106 3300013296 Bacteria 7231
20 Ga0157374_10023704 3300013296 Bacteria 5494
21 Ga0157378_10180848 3300013297 Bacteria 1984
22 Ga0157380_10002951 3300014326 Bacteria 11572
23 Ga0157379_10112535 3300014968 Bacteria 2446
24 Ga0206356_10754225 3300020070 Bacteria 3073
25 Ga0207643_10065120 3300025908 Bacteria 2087
26 Ga0207652_10127170 3300025921 Bacteria 2270
27 Ga0207650_10042994 3300025925 Bacteria 3315
28 Ga0207670_10210037 3300025936 Bacteria 1484
29 Ga0207689_10076816 3300025942 Bacteria 2745
30 Ga0207661_10096087 3300025944 Bacteria 2479
31 Ga0207667_10000625 3300025949 Bacteria 45747
32 Ga0207667_10012700 3300025949 Bacteria 9679
33 Ga0207640_10000024 3300025981 Bacteria 154876
34 Ga0207702_10087901 3300026078 Bacteria 2714
35 Ga0207674_10000982 3300026116 Bacteria 37279
36 Ga0265356_1000440 3300028017 Bacteria 7576
37 Ga0265334_10008614 3300028573 Bacteria 4331
38 Ga0265338_10000349 3300028800 Bacteria 84015
39 Ga0265338_10000681 3300028800 Bacteria 58385
40 Ga0265762_1007506 3300030760 Bacteria 1944
41 Ga0265332_10004269 3300031238 Bacteria 6753
42 Ga0265325_10003954 3300031241 Bacteria 9481
43 Ga0265340_10056071 3300031247 Bacteria 1896
44 Ga0265339_10009841 3300031249 Bacteria 5971
45 Ga0265339_10016514 3300031249 Bacteria 4398
46 Ga0265331_10016466 3300031250 Bacteria 3880
47 Ga0265327_10035062 3300031251 Bacteria 2778
48 Ga0265316_10008309 3300031344 Bacteria 9640
49 Ga0307408_100166263 3300031548 Bacteria 1757
50 Ga0265313_10000083 3300031595 Bacteria 92778
51 Ga0265313_10026949 3300031595 Bacteria 3016
52 Ga0316575_10000465 3300031665 Bacteria 11619
53 Ga0316579_10003259 3300031691 Bacteria 6296
54 Ga0265342_10003349 3300031712 Bacteria 13237
55 Ga0316576_10000087 3300031727 Bacteria 32443
56 Ga0316578_10001892 3300031728 Bacteria 8842
57 Ga0316578_10002155 3300031728 Bacteria 8481
58 Ga0316578_10067042 3300031728 Bacteria 2121
59 Ga0316577_10000133 3300031733 Bacteria 21962
60 Ga0316577_10003838 3300031733 Bacteria 7658
61 Ga0316577_10048093 3300031733 Bacteria 2382
62 Ga0307409_100101609 3300031995 Bacteria 2386
63 Ga0316585_10001029 3300032137 Bacteria 7216
64 Ga0316580_10000107 3300032139 Bacteria 15287
65 Ga0316593_10000243 3300032168 Bacteria 8868
66 Ga0316593_10000394 3300032168 Bacteria 7810
67 Ga0316593_10001926 3300032168 Bacteria 4761
68 Ga0316592_1000034 3300033524 Bacteria 10807
69 Ga0316588_1010099 3300033528 Bacteria 1982
70 Ga0316596_1000200 3300033541 Bacteria 8792
71 Ga0316596_1000411 3300033541 Bacteria 7126
72 Ga0316596_1003222 3300033541 Bacteria 3553
73 Ga0316596_1011223 3300033541 Bacteria 2184
74 Ga0316574_0001978 3300035398 Bacteria 10063
75 Ga0316582_0015325 3300036647 Bacteria 4379
76 Ga0316582_0062330 3300036647 Bacteria 2394
77 Ga0316584_0001413 3300036712 Bacteria 14365
78 Ga0316584_0003875 3300036712 Bacteria 9816
79 Ga0316584_0060627 3300036712 Bacteria 2834
80 Ga0316584_0212808 3300036712 Bacteria 1422
81 Ga0373925_0060116 3300037068 Bacteria 2853
82 Ga0395900_0015322 3300037418 Bacteria 7814
83 Ga0395898_0007865 3300037466 Bacteria 11312
84 Ga0316581_0009783 3300037588 Bacteria 2644
85 Ga0395901_0014048 3300038443 Bacteria 8150
86 Ga0395901_0175347 3300038443 Bacteria 2249
87 Ga0400485_12456 3300038735 Bacteria 2697
88 Ga0400486_17806 3300038742 Bacteria 7177
89 Ga0400483_195378 3300039062 Bacteria 81541
90 Ga0436360_0601861 3300039438 Bacteria 1884
91 Ga0436361_0454930 3300039447 Bacteria 8272
92 Ga0451577_0000991 3300042876 Bacteria 41360
93 Ga0451577_0004623 3300042876 Bacteria 14457
94 Ga0453684_0000009 3300044712 Bacteria 1139914
95 Ga0453684_0000219 3300044712 Bacteria 250149
96 Ga0453684_0000518 3300044712 Bacteria 147557
97 Ga0453684_0004082 3300044712 Bacteria 31712
98 Ga0453684_0051159 3300044712 Bacteria 5421
99 Ga0453684_0073135 3300044712 Bacteria 4324
100 Ga0453684_0181738 3300044712 Bacteria 2469
101 Ga0451576_0000010 3300045051 Bacteria 679007
102 Ga0466958_0070598 3300045836 Bacteria 2138
103 Ga0466967_0001238 3300045976 Bacteria 14416
104 Ga0495592_0083295 3300046454 Eukaryota 2310
105 Ga0495594_0062077 3300046499 Bacteria 2069
106 Ga0495630_0000002 3300046517 Bacteria 1277125
107 Ga0495652_0000017 3300046529 Eukaryota 203141
108 Ga0495613_0038627 3300046689 Bacteria 3538
109 Ga0495602_0004302 3300048088 Eukaryota 14833
110 Ga0501310_000036 3300049130 Bacteria 13419
111 Ga0501075_0030432 3300049591 Bacteria 3999
112 Ga0501241_004644 3300049758 Bacteria 2566
113 Ga0501045_0184853 3300049824 Bacteria 1553
114 nmdc:mga00v17_43_c2 3300050491 Bacteria 71030
115 nmdc:mga0yw44_81_c1 3300050492 Bacteria 33838
116 nmdc:mga0k408_49613_c2 3300050493 Bacteria 2097
117 Ga0495612_0099439 3300053078 Bacteria 1238
118 Ga0500600_0059029 3300053149 Eukaryota 2146
119 2623590756 2622736626 Bacteria 7181580
120 2831936234 2831935698 Bacteria 5963223
121 2832004912 2832004796 Bacteria 6538017
122 2842760616 2842757796 Bacteria 3981385
123 2855684667 2855683550 Bacteria 7134265
124 2858905697 2858902515 Bacteria 7086037
125 2866071243 2866065130 Bacteria 6518152
126 2867511826 2867507094 Bacteria 6506033
127 2887486074 2887478801 Bacteria 8972725
128 Ga0207703_10061156
129 Ga0070683_100028632
130 Ga0070670_100013050
131 Ga0068869_100057678
132 Ga0070691_10029615
133 Ga0070661_100074553
134 Ga0070714_100166284
135 Ga0070686_100001511
136 Ga0068855_100012294
137 Ga0068855_100066433
138 Ga0068857_100043229
139 Ga0068854_100000039
140 Ga0068856_100121877
141 Ga0068859_100030423
142 Ga0075364_10000215
143 Ga0075428_100024794
144 Ga0075429_100094516
145 Ga0097620_100030423
146 Ga0157374_10013106
147 Ga0157374_10023704
148 Ga0157378_10180848
149 Ga0157380_10002951
150 Ga0157379_10112535
151 Ga0206356_10754225
152 Ga0207643_10065120
153 Ga0207652_10127170
154 Ga0207650_10042994
155 Ga0207670_10210037
156 Ga0207689_10076816
157 Ga0207661_10096087
158 Ga0207667_10000625
159 Ga0207667_10012700
160 Ga0207640_10000024
161 Ga0207702_10087901
162 Ga0207674_10000982
163 Ga0265356_1000440
164 Ga0265334_10008614
165 Ga0265338_10000349
166 Ga0265338_10000681
167 Ga0265762_1007506
168 Ga0265332_10004269
169 Ga0265325_10003954
170 Ga0265340_10056071
171 Ga0265339_10009841
172 Ga0265339_10016514
173 Ga0265331_10016466
174 Ga0265327_10035062
175 Ga0265316_10008309
176 Ga0307408_100166263
177 Ga0265313_10000083
178 Ga0265313_10026949
179 Ga0316575_10000465
180 Ga0316579_10003259
181 Ga0265342_10003349
182 Ga0316576_10000087
183 Ga0316578_10001892
184 Ga0316578_10002155
185 Ga0316578_10067042
186 Ga0316577_10000133
187 Ga0316577_10003838
188 Ga0316577_10048093
189 Ga0307409_100101609
190 Ga0316585_10001029
191 Ga0316580_10000107
192 Ga0316593_10000243
193 Ga0316593_10000394
194 Ga0316593_10001926
195 Ga0316592_1000034
196 Ga0316588_1010099
197 Ga0316596_1000200
198 Ga0316596_1000411
199 Ga0316596_1003222
200 Ga0316596_1011223
201 Ga0316574_0001978
202 Ga0316582_0015325
203 Ga0316582_0062330
204 Ga0316584_0001413
205 Ga0316584_0003875
206 Ga0316584_0060627
207 Ga0316584_0212808
208 Ga0373925_0060116
209 Ga0395900_0015322
210 Ga0395898_0007865
211 Ga0316581_0009783
212 Ga0395901_0014048
213 Ga0395901_0175347
214 Ga0400485_12456
215 Ga0400486_17806
216 Ga0400483_195378
217 Ga0436360_0601861
218 Ga0436361_0454930
219 Ga0451577_0000991
220 Ga0451577_0004623
221 Ga0453684_0000009
222 Ga0453684_0000219
223 Ga0453684_0000518
224 Ga0453684_0004082
225 Ga0453684_0051159
226 Ga0453684_0073135
227 Ga0453684_0181738
228 Ga0451576_0000010
229 Ga0466958_0070598
230 Ga0466967_0001238
231 Ga0495592_0083295
232 Ga0495594_0062077
233 Ga0495630_0000002
234 Ga0495652_0000017
235 Ga0495613_0038627
236 Ga0495602_0004302
237 Ga0501310_000036
238 Ga0501075_0030432
239 Ga0501241_004644
240 Ga0501045_0184853
241 nmdc:mga00v17_43_c2
242 nmdc:mga0yw44_81_c1
243 nmdc:mga0k408_49613_c2
244 Ga0495612_0099439
245 Ga0500600_0059029
246 2623590756
247 2831936234
248 2832004912
249 2842760616
250 2855684667
251 2858905697
252 2866071243
253 2867511826
254 2887486074

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00291

PALP

Pyridoxal-phosphate dependent enzyme

101

428

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
5ey5-assembly1.cif.gz_D lbcats 0.9899 9 388
6cut-assembly1.cif.gz_A engineered holo trpb from pyrococcus furiosus, pftrpb7e6 with (2s,3s)-isopropylserine bound as the external aldimine 0.9879 10 391
7rnp-assembly2.cif.gz_B engineered tryptophan synthase b-subunit from pyrococcus furiosus, pftrpb2b9_h275e with 4-cl-trp non-covalently bound 0.9872 10 390
6uap-assembly2.cif.gz_D crystal structure of tryptophan synthase from m. tuberculosis - open form with brd6309 bound 0.9862 4 393
6am8-assembly2.cif.gz_D engineered tryptophan synthase b-subunit from pyrococcus furiosus, pftrpb2b9 with trp bound as e(aex2) 0.9861 10 390
ID Description Score Start End Superfamily
af_Q60179_69_392_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9922 60 383 3.40.50.1100
af_Q60179_217_401_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9918 209 393 3.40.50.1100
af_P14671_91_282_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9887 21 205 3.40.50.1100
af_Q60179_69_392_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9861 60 383 3.40.50.1100
af_P43283_236_387_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9815 241 391 3.40.50.1100
ID Description Score Start End GO Terms
AF-G5SXB3-F1-model_v4 tryptophan synthase (EC 4.2.1.20) 1.009 111 175 GO:0004834
GO:0005737
AF-A0A317YN28-F1-model_v4 tryptophan synthase (EC 4.2.1.20) 1.001 105 207 GO:0004834
GO:0005737
AF-T1AR76-F1-model_v4 Tryptophan synthase, beta subunit 0.9992 241 343 GO:0004834
GO:0005737
AF-A0A2X3CN98-F1-model_v4 Tryptophan synthase beta chain (EC 4.2.1.20) 0.9981 96 223 GO:0004834
GO:0005737
AF-A0A6B3IFD7-F1-model_v4 Tryptophan synthase subunit beta (EC 4.2.1.20) 0.9981 238 350 GO:0004834
GO:0005737

Map