F133452

General Info

Members Datasets Scaffolds Average Seq Length
127 96 118 495

Family's Representative Sequence

Representative Sequence 3300005467|Ga0070706_100000683|Ga0070706_10000068321
Length 591
Sequence VAVLQDLPLRLESVGDRSPGVRDCHPLGPSRFAAIEFMKRLKVSSAAPQADMDLRLRYRGTGGRRIRSVQNAPYLVRLSGKSVRAALRGGETDSNAYEEVEPLASSLVESLRAFGYSPQAALADLVDNSITAGSKNVWIDLHWDGAASYVTILDDGEGMSESVLREAMRPGSTSPLDPRKKGDLGRFGLGLKTASFSQCRLLTVRSKTEKRAAATRCWDLDYVGASRQWRLLKQAHPETEPRLSGLNKVSTGTVISWEKMDRLVGGTDRDDNKAHRRFLTMIDEVEEHLGMVFHRFLSRSRGRLRLWINDRPVEAWDPYLTEHGSEALGTERIALRGQVMSVSPYVLPHKSRISNELHRKASGPNGWNAQQGFYVYRGDRLLVAGSWLGLPFAKEEHYKLARIALDIPTTMDLDWDINVTKSKAVPPGVLKEHLLRIANFTRERAVAVFRHRGKLDGRSSSEPWVYFWSRVESAGRISYRINRKHPLVLAVLGDLDPPQSAGVEKILRLAEETVPIPSIVVDSALRPEAHEQPFGHAKSAEVLDVMRTIYEAMIADGVKPRVAIDRLGKMEPFNQFPELVAVVDGGAEQIP

Samples

Sample ID Description Type Environment
1 2599185185 Pseudomonas sp. NFPP07 Isolate Rhizoplane
2 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
3 2687453130 Dyella thiooxydans ATSB10 Isolate Unclassified
4 2808606418 Herbaspirillum sp. SJZ107 Isolate Rhizosphere
5 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
6 2818991452 Burkholderia cepacia 561 Isolate Unclassified
7 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
8 2928170801 Burkholderia sp. 572 Isolate Unclassified
9 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
12 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
34 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
35 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
36 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
37 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
38 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
39 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
47 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
49 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
50 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
51 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
52 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
53 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
54 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
55 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
56 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
57 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
60 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
61 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
62 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
63 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
64 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
65 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
66 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
67 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
68 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
69 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
70 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
71 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
72 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
73 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
74 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
75 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
76 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
77 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
78 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
79 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
80 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
81 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
82 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
83 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
84 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
85 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
86 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
87 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
88 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
89 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
93 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
94 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
95 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
96 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.7
Metatranscriptomes 0
Isolates 6.3

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.15
Nodule 1.57
Rhizoplane 0.79
Rhizosphere 78.74
Stem 0
Stem Tuber 0
Unclassified 15.75

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10086895 3300003316 Bacteria 5211
2 rootH1_10003347 3300003323 Bacteria 19564
3 rootH1_10009085 3300003323 Bacteria 31856
4 rootH1_10192082 3300003323 Unclassified 3214
5 Ga0058692_1001160 3300003856 Bacteria 10147
6 Ga0070683_100048993 3300005329 Viruses 3906
7 Ga0070711_100009213 3300005439 Bacteria 6070
8 Ga0070681_10019922 3300005458 Bacteria 6721
9 Ga0070706_100000683 3300005467 Bacteria 38463
10 Ga0070707_100000325 3300005468 Bacteria 46858
11 Ga0070707_100002147 3300005468 Bacteria 18879
12 Ga0070707_100067852 3300005468 Bacteria 3432
13 Ga0070698_100000460 3300005471 Bacteria 43138
14 Ga0070698_100001211 3300005471 Bacteria 28683
15 Ga0070699_100011455 3300005518 Bacteria 7658
16 Ga0070679_100002285 3300005530 Bacteria 17335
17 Ga0070684_100014666 3300005535 Bacteria 6356
18 Ga0070697_100003138 3300005536 Bacteria 12700
19 Ga0068855_100000542 3300005563 Bacteria 46212
20 Ga0068855_100023583 3300005563 Bacteria 7368
21 Ga0068856_100000013 3300005614 Bacteria 165611
22 Ga0068864_100000022 3300005618 Bacteria 261941
23 Ga0068858_100026301 3300005842 Bacteria 5409
24 Ga0075366_10000246 3300006195 Bacteria 23769
25 Ga0097621_100000191 3300006237 Bacteria 39497
26 Ga0068871_100000314 3300006358 Bacteria 33723
27 Ga0079104_1000047 3300006946 Bacteria 182563
28 Ga0105240_10213587 3300009093 Bacteria 2253
29 Ga0105237_10001956 3300009545 Bacteria 26233
30 Ga0157369_10001247 3300013105 Bacteria 31703
31 Ga0157372_10006723 3300013307 Bacteria 12230
32 Ga0157380_10000020 3300014326 Bacteria 114925
33 Ga0182006_1000228 3300015261 Bacteria 53618
34 Ga0213876_10000958 3300021384 Bacteria 18971
35 Ga0209233_1001182 3300025261 Bacteria 10542
36 Ga0209025_1000790 3300025294 Bacteria 51927
37 Ga0207684_10000706 3300025910 Bacteria 39424
38 Ga0207707_10020037 3300025912 Bacteria 5835
39 Ga0207695_10000025 3300025913 Bacteria 627211
40 Ga0207652_10000312 3300025921 Bacteria 50048
41 Ga0207646_10000512 3300025922 Bacteria 51799
42 Ga0207646_10001537 3300025922 Bacteria 28255
43 Ga0207667_10003629 3300025949 Bacteria 19042
44 Ga0207667_10047114 3300025949 Unclassified 4564
45 Ga0207676_10000029 3300026095 Bacteria 232795
46 Ga0209281_1000012 3300027111 Bacteria 684886
47 Ga0209371_1002504 3300027312 Bacteria 10173
48 Ga0209371_1006876 3300027312 Bacteria 4106
49 Ga0265336_10000011 3300028666 Bacteria 275816
50 Ga0268256_1000831 3300030500 Bacteria 21976
51 Ga0268256_1006991 3300030500 Bacteria 4106
52 Ga0307511_10001484 3300030521 Bacteria 24833
53 Ga0265327_10002573 3300031251 Bacteria 18776
54 Ga0265327_10049395 3300031251 Bacteria 2207
55 Ga0265316_10001699 3300031344 Bacteria 23355
56 Ga0307509_10164691 3300031507 Bacteria 2108
57 Ga0307508_10005169 3300031616 Bacteria 12495
58 Ga0307414_10000092 3300032004 Bacteria 72333
59 Ga0307414_10001274 3300032004 Bacteria 13008
60 Ga0307507_10000009 3300033179 Bacteria 265992
61 Ga0395899_0000006 3300037312 Bacteria 666341
62 Ga0395899_0000530 3300037312 Bacteria 41828
63 Ga0395900_0000545 3300037418 Bacteria 52739
64 Ga0395898_0000315 3300037466 Bacteria 111811
65 Ga0395905_0000005 3300037471 Bacteria 557808
66 Ga0395905_0005255 3300037471 Bacteria 13247
67 Ga0395905_0123573 3300037471 Bacteria 2434
68 Ga0395901_0000242 3300038443 Bacteria 68210
69 Ga0436365_0545430 3300039437 Bacteria 32751
70 Ga0439449_0023706 3300042007 Unclassified 2295
71 Ga0439463_000055 3300042016 Bacteria 23884
72 Ga0451577_0014335 3300042876 Bacteria 7390
73 Ga0466969_0000272 3300044656 Bacteria 28299
74 Ga0453683_0092551 3300044673 Bacteria 1895
75 Ga0453684_0000113 3300044712 Bacteria 359598
76 Ga0453684_0000185 3300044712 Bacteria 274418
77 Ga0453684_0000967 3300044712 Bacteria 94647
78 Ga0453684_0017500 3300044712 Bacteria 11098
79 Ga0453684_0111773 3300044712 Bacteria 3318
80 Ga0453684_0268665 3300044712 Bacteria 1950
81 Ga0451576_0002144 3300045051 Bacteria 30580
82 Ga0495580_0047672 3300046472 Unclassified 3037
83 Ga0495605_0019927 3300046474 Bacteria 3571
84 Ga0495583_0002286 3300046506 Bacteria 16764
85 Ga0495583_0017554 3300046506 Bacteria 3795
86 Ga0495643_0012090 3300046522 Bacteria 5218
87 Ga0495648_0004801 3300046524 Bacteria 11420
88 Ga0495648_0009256 3300046524 Bacteria 7656
89 Ga0495642_0000477 3300046528 Bacteria 20542
90 Ga0495597_0000102 3300046542 Bacteria 76204
91 Ga0495597_0000300 3300046542 Bacteria 44515
92 Ga0495633_0000007 3300046558 Bacteria 317976
93 Ga0495633_0018595 3300046558 Bacteria 3527
94 Ga0495668_0000778 3300046616 Bacteria 37231
95 Ga0495611_0001863 3300046648 Bacteria 10043
96 Ga0495611_0022140 3300046648 Bacteria 2749
97 Ga0495661_0000534 3300046665 Bacteria 39177
98 Ga0495589_0000091 3300046794 Bacteria 85670
99 Ga0495660_0002459 3300046810 Bacteria 11824
100 Ga0495660_0004845 3300046810 Bacteria 8114
101 Ga0495681_0000076 3300047470 Bacteria 89319
102 Ga0495681_0006088 3300047470 Bacteria 7973
103 Ga0495626_0000362 3300048091 Bacteria 47538
104 Ga0495626_0003247 3300048091 Bacteria 10525
105 Ga0496116_0000506 3300048919 Bacteria 52861
106 Ga0496121_0000008 3300048924 Bacteria 843593
107 Ga0496124_0003948 3300048927 Bacteria 17719
108 Ga0496124_0005135 3300048927 Bacteria 14903
109 Ga0496125_0000543 3300048928 Bacteria 64969
110 Ga0501034_0000218 3300049571 Bacteria 109350
111 Ga0501037_0000062 3300049573 Bacteria 97779
112 Ga0501043_0062996 3300049579 Bacteria 2912
113 Ga0501070_0069829 3300049586 Bacteria 2909
114 Ga0501070_0076131 3300049586 Bacteria 2778
115 Ga0501080_0010000 3300049742 Bacteria 8670
116 Ga0501083_0000633 3300049744 Bacteria 22747
117 Ga0501044_0008483 3300049823 Bacteria 11265
118 nmdc:mga0k408_399_c1 3300050493 Bacteria 23752

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005618 Ga0068864_100000022 Ga0068864_100000022133 397
2 3300026095 Ga0207676_10000029 Ga0207676_10000029106 397
3 3300044712 Ga0453684_0268665 Ga0453684_0268665_630_1919 416
4 3300046616 Ga0495668_0000778 Ga0495668_0000778_12057_13529 449
5 3300046524 Ga0495648_0009256 Ga0495648_0009256_5571_7043 453
6 3300046648 Ga0495611_0001863 Ga0495611_0001863_5240_6712 453
7 iso_pu_bacteria 2643221678 2644439997 457
8 3300046528 Ga0495642_0000477 Ga0495642_0000477_3336_4805 459
9 3300047470 Ga0495681_0006088 Ga0495681_0006088_2001_3470 459
10 3300037312 Ga0395899_0000006 Ga0395899_0000006_244316_245800 461
11 3300046648 Ga0495611_0022140 Ga0495611_0022140_1267_2703 461
12 3300048091 Ga0495626_0003247 Ga0495626_0003247_2860_4329 461
13 3300005329 Ga0070683_100048993 Ga0070683_1000489933 462
14 3300005535 Ga0070684_100014666 Ga0070684_1000146663 462
15 3300013307 Ga0157372_10006723 Ga0157372_1000672310 462
16 3300005518 Ga0070699_100011455 Ga0070699_1000114554 465
17 3300025922 Ga0207646_10000512 Ga0207646_1000051223 465
18 3300037312 Ga0395899_0000530 Ga0395899_0000530_419_1906 465
19 3300037418 Ga0395900_0000545 Ga0395900_0000545_48568_50055 465
20 3300037466 Ga0395898_0000315 Ga0395898_0000315_49942_51429 465
21 3300037471 Ga0395905_0000005 Ga0395905_0000005_410716_412203 465
22 3300038443 Ga0395901_0000242 Ga0395901_0000242_47933_49420 465
23 3300046542 Ga0495597_0000102 Ga0495597_0000102_46884_48398 465
24 3300046794 Ga0495589_0000091 Ga0495589_0000091_35159_36673 465
25 3300047470 Ga0495681_0000076 Ga0495681_0000076_69057_70574 465
26 3300048928 Ga0496125_0000543 Ga0496125_0000543_54000_55457 465
27 iso_pu_bacteria 2816332188 2816872519 466
28 3300046506 Ga0495583_0002286 Ga0495583_0002286_10146_11615 467
29 3300005530 Ga0070679_100002285 Ga0070679_1000022857 468
30 3300015261 Ga0182006_1000228 Ga0182006_100022827 468
31 3300025921 Ga0207652_10000312 Ga0207652_1000031224 468
32 3300032004 Ga0307414_10001274 Ga0307414_100012746 468
33 3300033179 Ga0307507_10000009 Ga0307507_100000099 468
34 3300046558 Ga0495633_0000007 Ga0495633_0000007_310496_311953 468
35 3300049579 Ga0501043_0062996 Ga0501043_0062996_575_2053 468
36 3300044712 Ga0453684_0017500 Ga0453684_0017500_1130_2581 470
37 3300046558 Ga0495633_0018595 Ga0495633_0018595_434_1951 471
38 3300006237 Ga0097621_100000191 Ga0097621_10000019123 472
39 3300006358 Ga0068871_100000314 Ga0068871_10000031420 472
40 3300028666 Ga0265336_10000011 Ga0265336_10000011222 474
41 3300046522 Ga0495643_0012090 Ga0495643_0012090_1609_3123 474
42 3300046665 Ga0495661_0000534 Ga0495661_0000534_4588_6102 474
43 3300048091 Ga0495626_0000362 Ga0495626_0000362_12359_13873 474
44 3300003323 rootH1_10003347 rootH1_100033478 475
45 3300005458 Ga0070681_10019922 Ga0070681_100199222 475
46 3300025912 Ga0207707_10020037 Ga0207707_100200372 475
47 3300031616 Ga0307508_10005169 Ga0307508_100051692 475
48 3300042007 Ga0439449_0023706 Ga0439449_0023706_208_1689 475
49 3300044712 Ga0453684_0000113 Ga0453684_0000113_279580_281049 475
50 3300025913 Ga0207695_10000025 Ga0207695_10000025488 476
51 3300032004 Ga0307414_10000092 Ga0307414_1000009211 476
52 3300049586 Ga0501070_0076131 Ga0501070_0076131_318_1793 476
53 3300003323 rootH1_10009085 rootH1_1000908510 477
54 3300005468 Ga0070707_100002147 Ga0070707_10000214711 477
55 3300025922 Ga0207646_10001537 Ga0207646_100015372 477
56 3300037471 Ga0395905_0123573 Ga0395905_0123573_801_2273 477
57 3300044712 Ga0453684_0000967 Ga0453684_0000967_27800_29272 477
58 3300044656 Ga0466969_0000272 Ga0466969_0000272_11948_13423 478
59 iso_pu_bacteria 2808606418 2809146891 478
60 3300031344 Ga0265316_10001699 Ga0265316_1000169913 479
61 3300031507 Ga0307509_10164691 Ga0307509_101646912 479
62 3300042876 Ga0451577_0014335 Ga0451577_0014335_4409_5911 479
63 3300044673 Ga0453683_0092551 Ga0453683_0092551_263_1741 479
64 3300045051 Ga0451576_0002144 Ga0451576_0002144_22401_23879 479
65 3300046506 Ga0495583_0017554 Ga0495583_0017554_2227_3708 479
66 3300046810 Ga0495660_0004845 Ga0495660_0004845_1869_3371 479
67 iso_pu_bacteria 2687453130 2687581445 479
68 iso_pu_bacteria 2919468124 2919471677 479
69 3300003856 Ga0058692_1001160 Ga0058692_10011604 480
70 3300005563 Ga0068855_100023583 Ga0068855_1000235834 480
71 3300006946 Ga0079104_1000047 Ga0079104_1000047152 480
72 3300013105 Ga0157369_10001247 Ga0157369_1000124722 480
73 3300014326 Ga0157380_10000020 Ga0157380_1000002066 480
74 3300025949 Ga0207667_10047114 Ga0207667_100471142 480
75 3300027111 Ga0209281_1000012 Ga0209281_1000012596 480
76 3300027312 Ga0209371_1002504 Ga0209371_10025044 480
77 3300027312 Ga0209371_1006876 Ga0209371_10068762 480
78 3300030500 Ga0268256_1000831 Ga0268256_10008314 480
79 3300030500 Ga0268256_1006991 Ga0268256_10069911 480
80 3300046542 Ga0495597_0000300 Ga0495597_0000300_39393_40895 480
81 3300048927 Ga0496124_0005135 Ga0496124_0005135_6495_7997 480
82 3300048924 Ga0496121_0000008 Ga0496121_0000008_493205_494689 481
83 3300049571 Ga0501034_0000218 Ga0501034_0000218_15788_17278 481
84 3300049571 Ga0501034_0000218 Ga0501034_0000218_70401_71891 481
85 3300049586 Ga0501070_0069829 Ga0501070_0069829_1165_2664 481
86 3300049742 Ga0501080_0010000 Ga0501080_0010000_4591_6081 481
87 3300049744 Ga0501083_0000633 Ga0501083_0000633_46_1536 481
88 3300049823 Ga0501044_0008483 Ga0501044_0008483_6259_7749 481
89 3300037471 Ga0395905_0005255 Ga0395905_0005255_8239_9765 482
90 3300046474 Ga0495605_0019927 Ga0495605_0019927_1417_2931 482
91 3300025949 Ga0207667_10003629 Ga0207667_1000362911 483
92 3300030521 Ga0307511_10001484 Ga0307511_100014848 484
93 3300044712 Ga0453684_0000185 Ga0453684_0000185_8265_9767 484
94 3300005439 Ga0070711_100009213 Ga0070711_1000092137 485
95 3300006195 Ga0075366_10000246 Ga0075366_1000024612 485
96 3300050493 nmdc:mga0k408_399_c1 nmdc:mga0k408_399_c1_9766_11289 485
97 3300005842 Ga0068858_100026301 Ga0068858_1000263012 486
98 3300048927 Ga0496124_0003948 Ga0496124_0003948_4133_5641 487
99 iso_pu_bacteria 2599185185 2599484501 488
100 3300003323 rootH1_10192082 rootH1_101920822 489
101 3300044712 Ga0453684_0111773 Ga0453684_0111773_1389_2924 489
102 3300005468 Ga0070707_100000325 Ga0070707_10000032522 490
103 3300005471 Ga0070698_100001211 Ga0070698_1000012118 490
104 3300005563 Ga0068855_100000542 Ga0068855_10000054230 490
105 3300031251 Ga0265327_10002573 Ga0265327_100025737 490
106 3300042016 Ga0439463_000055 Ga0439463_000055_10390_11904 490
107 3300009545 Ga0105237_10001956 Ga0105237_1000195613 491
108 3300049573 Ga0501037_0000062 Ga0501037_0000062_87473_88990 491
109 3300005614 Ga0068856_100000013 Ga0068856_10000001345 492
110 3300025261 Ga0209233_1001182 Ga0209233_10011825 492
111 3300005468 Ga0070707_100067852 Ga0070707_1000678522 494
112 3300031251 Ga0265327_10049395 Ga0265327_100493952 494
113 3300005467 Ga0070706_100000683 Ga0070706_10000068321 495
114 3300005471 Ga0070698_100000460 Ga0070698_10000046025 495
115 3300005536 Ga0070697_100003138 Ga0070697_1000031389 495
116 3300025910 Ga0207684_10000706 Ga0207684_100007069 495
117 iso_pu_bacteria 2818991452 2819637388 495
118 iso_pu_bacteria 2928170801 2928178910 495
119 3300021384 Ga0213876_10000958 Ga0213876_100009585 496
120 3300039437 Ga0436365_0545430 Ga0436365_0545430_17186_18721 496
121 3300009093 Ga0105240_10213587 Ga0105240_102135872 499
122 3300025294 Ga0209025_1000790 Ga0209025_100079033 499
123 3300046524 Ga0495648_0004801 Ga0495648_0004801_1549_3057 499
124 3300046810 Ga0495660_0002459 Ga0495660_0002459_1917_3425 499
125 3300048919 Ga0496116_0000506 Ga0496116_0000506_47032_48537 499
126 3300046472 Ga0495580_0047672 Ga0495580_0047672_757_2310 500
127 3300003316 rootH1_10086895 rootH1_100868952 507

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13589

HATPase_c_3

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

116

253

0.93

PF02518

HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

117

214

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
1ysr-assembly1.cif.gz_C crystal structure of atp binding domain of prrb from mycobacterium tuberculosis 0.8871 44 85
4biy-assembly2.cif.gz_D crystal structure of cpxahdc (monoclinic form 2) 0.7475 41 95
1bis-assembly1.cif.gz_B hiv-1 integrase core domain 0.7387 58 75
6ex9-assembly1.cif.gz_A-2 crystal structure of hiv-1 integrase catalytic core domain with inhibitor peptide 0.7353 58 75
1px3-assembly1.cif.gz_D e. coli (lacz) beta-galactosidase (g794a) 0.7306 248 272
ID Description Score Start End Superfamily
af_Q23243_29_130_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.904 40 141 3.30.565.10
1ysrC00 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8871 44 85 3.30.565.10
af_Q23243_29_130_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8629 40 141 3.30.565.10
af_A0A1D6P0C0_307_431_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8368 29 145 3.30.565.10
af_F1QGA2_13_142_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8292 28 152 3.30.565.10
ID Description Score Start End GO Terms
AF-A0A3D3JHC4-F1-model_v4 ATP-binding protein 0.9518 18 210 GO:0005524
AF-A0A2S5LSY3-F1-model_v4 ATP-binding protein 0.9412 18 181
AF-A0A4V1TWJ3-F1-model_v4 deleted 0.9405 12 306
AF-A0A7W4AE97-F1-model_v4 ATP-binding protein 0.9391 42 362 GO:0005524
AF-A0A4Q3HCJ3-F1-model_v4 deleted 0.9321 12 369

Feature Viewer

pLDDT pTM Quality
82.8 0.68 Medium
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Predicted Structure (AlphaFold2)

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