F120239

General Info

Members Datasets Scaffolds Average Seq Length
123 95 246 300

Family's Representative Sequence

Representative Sequence 3300050513|nmdc:mga0rr50_372501_c1|nmdc:mga0rr50_372501_c1_45_1085
Length 346
Sequence LFGSLRRSDWNDHAPTLSERQIKRQYLVAWFTIRIGYAWAQMELRHLRYFVAVAEEQNVTRAAVRLHVSQPPLSRQIRNLEDELGIALFNRDAKTVRLTEAGRVFLNEARIILQRAGDAVQMAKAVAGGKRGEINVGYAPSLTVELLPRALKYFRESNPGVRVQLHDLSTQEMLHGLSDGKLQVGLLVQVSPKALAGLVFEELQRQVVCVAMHPAHPLARARKVGLEQIATERLITFTLADYPEHYAWIVGLFAPLNRLPQIAEEHDSVTSLIAAVESGRGVAVITQSLKCLAGPRLKIRPLQPAPPPLAIGIAYSRKFQSTAADHFIEAAKRAKEGRRERGGQWY

Samples

Sample ID Description Type Environment
1 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
13 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
14 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
19 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
20 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
21 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
28 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
29 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
30 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
31 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
41 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
42 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
43 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
44 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
45 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
46 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
47 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
48 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
49 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
50 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
51 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
52 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
53 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
54 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
55 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
56 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
57 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
58 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
59 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
60 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
61 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
62 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
63 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
64 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
65 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
66 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
67 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
68 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
69 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
70 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
71 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
72 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
73 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
74 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
75 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
76 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
77 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
87 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
88 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
89 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
91 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
92 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
93 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
94 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
95 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.37
Metatranscriptomes 0
Isolates 1.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 94.31
Stem 0
Stem Tuber 0
Unclassified 13.01

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga0rr50_372501_c1 3300050513 Bacteria 1203
2 rootL2_10009169 3300003322 Bacteria 13843
3 Ga0065712_10085776 3300005290 Bacteria 2675
4 Ga0065707_10156640 3300005295 Unclassified 1602
5 Ga0070690_100021224 3300005330 Bacteria 3962
6 Ga0070666_10087637 3300005335 Bacteria 2134
7 Ga0070689_100031974 3300005340 Bacteria 4001
8 Ga0070689_100043119 3300005340 Unclassified 3466
9 Ga0070689_100083986 3300005340 Bacteria 2502
10 Ga0070688_100284961 3300005365 Bacteria 1189
11 Ga0070706_100095026 3300005467 Bacteria 2766
12 Ga0070707_100102533 3300005468 Bacteria 2772
13 Ga0070684_100179186 3300005535 Bacteria 1926
14 Ga0068853_100000034 3300005539 Bacteria 113508
15 Ga0070686_100098900 3300005544 Unclassified 1967
16 Ga0070686_100137726 3300005544 Bacteria 1696
17 Ga0070695_100239434 3300005545 Unclassified 1316
18 Ga0068855_100012956 3300005563 Bacteria 10060
19 Ga0070702_100094917 3300005615 Unclassified 1817
20 Ga0068859_100182138 3300005617 Unclassified 2184
21 Ga0068859_100297714 3300005617 Bacteria 1706
22 Ga0068860_100000754 3300005843 Bacteria 36689
23 Ga0068871_100488523 3300006358 Bacteria 1108
24 Ga0075434_100437638 3300006871 Bacteria 1329
25 Ga0097620_100182143 3300006931 Unclassified 2184
26 Ga0097620_100297720 3300006931 Bacteria 1706
27 Ga0099795_10080002 3300007788 Bacteria 1249
28 Ga0111539_10099058 3300009094 Bacteria 3424
29 Ga0105238_10084776 3300009551 Bacteria 3158
30 Ga0099796_10045733 3300010159 Unclassified 1500
31 Ga0105239_10119786 3300010375 Bacteria 2922
32 Ga0163163_10000038 3300014325 Bacteria 154457
33 Ga0163163_11088306 3300014325 Unclassified 862
34 Ga0213873_10022452 3300021358 Bacteria 1494
35 Ga0213872_10030847 3300021361 Bacteria 2457
36 Ga0213872_10038919 3300021361 Bacteria 2170
37 Ga0213872_10067711 3300021361 Bacteria 1611
38 Ga0213872_10079956 3300021361 Bacteria 1469
39 Ga0213871_10010974 3300021441 Bacteria 2069
40 Ga0207680_10072775 3300025903 Bacteria 2135
41 Ga0207663_10190624 3300025916 Unclassified 1472
42 Ga0207646_10097643 3300025922 Bacteria 2632
43 Ga0207694_10204333 3300025924 Bacteria 1608
44 Ga0207670_10026916 3300025936 Bacteria 3630
45 Ga0207670_10033069 3300025936 Bacteria 3330
46 Ga0207667_10008997 3300025949 Bacteria 11814
47 Ga0207639_10000052 3300026041 Bacteria 113608
48 Ga0207641_10018940 3300026088 Bacteria 5647
49 Ga0268264_10000747 3300028381 Bacteria 36690
50 Ga0265326_10035202 3300028558 Bacteria 1424
51 Ga0265338_10000479 3300028800 Bacteria 71329
52 Ga0265324_10023512 3300029957 Bacteria 2194
53 Ga0265327_10057406 3300031251 Bacteria 2002
54 Ga0265316_10041592 3300031344 Bacteria 3677
55 Ga0307509_10069815 3300031507 Bacteria 3671
56 Ga0265314_10000037 3300031711 Bacteria 225790
57 Ga0307412_10219042 3300031911 Bacteria 1458
58 Ga0373931_0166478 3300035691 Bacteria 1296
59 Ga0373937_0046332 3300036401 Bacteria 3976
60 Ga0373937_0339368 3300036401 Bacteria 1423
61 Ga0373925_0005231 3300037068 Bacteria 9700
62 Ga0395899_0310596 3300037312 Unclassified 1065
63 Ga0395905_0251239 3300037471 Bacteria 1652
64 Ga0395905_0316091 3300037471 Unclassified 1451
65 Ga0436364_1139057 3300037853 Bacteria 1853
66 Ga0436364_1460929 3300037853 Bacteria 7896
67 Ga0436360_0049554 3300039438 Bacteria 7177
68 Ga0436360_0830505 3300039438 Bacteria 1366
69 Ga0436361_0175765 3300039447 Bacteria 2234
70 Ga0436361_0455658 3300039447 Bacteria 1640
71 Ga0436361_0525718 3300039447 Bacteria 2838
72 Ga0436361_0556006 3300039447 Bacteria 1214
73 Ga0436361_0637260 3300039447 Bacteria 2763
74 Ga0436361_0797882 3300039447 Bacteria 3857
75 Ga0436363_0881410 3300039450 Bacteria 4712
76 Ga0436363_1327259 3300039450 Bacteria 1582
77 Ga0436362_1090933 3300039453 Bacteria 1588
78 Ga0451577_0000505 3300042876 Bacteria 65462
79 Ga0451577_0143945 3300042876 Bacteria 2143
80 Ga0451577_0173213 3300042876 Bacteria 1945
81 Ga0453684_0000001 3300044712 Bacteria 2623166
82 Ga0451576_0159612 3300045051 Bacteria 2353
83 Ga0495592_0000006 3300046454 Bacteria 192981
84 Ga0495629_0206054 3300046459 Bacteria 1359
85 Ga0495662_0002830 3300046476 Bacteria 8773
86 Ga0495664_0017469 3300046477 Bacteria 4102
87 Ga0495618_0002591 3300046514 Bacteria 11587
88 Ga0495628_0000235 3300046516 Bacteria 48651
89 Ga0495630_0016517 3300046517 Bacteria 5395
90 Ga0495666_0023768 3300046526 Bacteria 3031
91 Ga0495652_0070984 3300046529 Bacteria 2909
92 Ga0495586_0000275 3300046535 Bacteria 33057
93 Ga0495645_0024475 3300046543 Bacteria 4381
94 Ga0495634_0191072 3300046642 Bacteria 1277
95 Ga0495599_0008601 3300046678 Bacteria 6213
96 Ga0495658_0008243 3300046683 Bacteria 5162
97 Ga0495658_0081476 3300046683 Bacteria 1900
98 Ga0495658_0141931 3300046683 Unclassified 1469
99 Ga0495604_0215745 3300047317 Bacteria 1324
100 Ga0495674_0024629 3300047319 Bacteria 5525
101 Ga0501031_0001565 3300049568 Bacteria 14245
102 Ga0501032_0071959 3300049569 Bacteria 2304
103 Ga0501033_0028927 3300049570 Bacteria 4164
104 Ga0501036_0030192 3300049572 Bacteria 4580
105 Ga0501037_0000020 3300049573 Bacteria 155468
106 Ga0501038_0118309 3300049574 Bacteria 2188
107 Ga0501039_0001756 3300049575 Bacteria 15993
108 Ga0501039_0435057 3300049575 Unclassified 1030
109 Ga0501043_0000064 3300049579 Bacteria 93899
110 Ga0501043_0000514 3300049579 Bacteria 34829
111 Ga0501047_0015403 3300049581 Bacteria 7284
112 Ga0501047_0058550 3300049581 Bacteria 3722
113 Ga0501047_0330098 3300049581 Unclassified 1364
114 Ga0501070_0000840 3300049586 Bacteria 27876
115 Ga0501071_0058152 3300049587 Bacteria 2795
116 Ga0501083_0011136 3300049744 Bacteria 6314
117 Ga0501035_0000216 3300049822 Bacteria 69506
118 Ga0501044_0000510 3300049823 Bacteria 47224
119 nmdc:mga06r32_222849_c1 3300050510 Unclassified 1874
120 nmdc:mga08y16_112275_c1 3300050511 Bacteria 2837
121 nmdc:mga0a205_544500_c1 3300050515 Bacteria 1016
122 2795797722 2795385472 Bacteria 6627535
123 8033689756 8033684223 Bacteria 6906479
124 nmdc:mga0rr50_372501_c1
125 rootL2_10009169
126 Ga0065712_10085776
127 Ga0065707_10156640
128 Ga0070690_100021224
129 Ga0070666_10087637
130 Ga0070689_100031974
131 Ga0070689_100043119
132 Ga0070689_100083986
133 Ga0070688_100284961
134 Ga0070706_100095026
135 Ga0070707_100102533
136 Ga0070684_100179186
137 Ga0068853_100000034
138 Ga0070686_100098900
139 Ga0070686_100137726
140 Ga0070695_100239434
141 Ga0068855_100012956
142 Ga0070702_100094917
143 Ga0068859_100182138
144 Ga0068859_100297714
145 Ga0068860_100000754
146 Ga0068871_100488523
147 Ga0075434_100437638
148 Ga0097620_100182143
149 Ga0097620_100297720
150 Ga0099795_10080002
151 Ga0111539_10099058
152 Ga0105238_10084776
153 Ga0099796_10045733
154 Ga0105239_10119786
155 Ga0163163_10000038
156 Ga0163163_11088306
157 Ga0213873_10022452
158 Ga0213872_10030847
159 Ga0213872_10038919
160 Ga0213872_10067711
161 Ga0213872_10079956
162 Ga0213871_10010974
163 Ga0207680_10072775
164 Ga0207663_10190624
165 Ga0207646_10097643
166 Ga0207694_10204333
167 Ga0207670_10026916
168 Ga0207670_10033069
169 Ga0207667_10008997
170 Ga0207639_10000052
171 Ga0207641_10018940
172 Ga0268264_10000747
173 Ga0265326_10035202
174 Ga0265338_10000479
175 Ga0265324_10023512
176 Ga0265327_10057406
177 Ga0265316_10041592
178 Ga0307509_10069815
179 Ga0265314_10000037
180 Ga0307412_10219042
181 Ga0373931_0166478
182 Ga0373937_0046332
183 Ga0373937_0339368
184 Ga0373925_0005231
185 Ga0395899_0310596
186 Ga0395905_0251239
187 Ga0395905_0316091
188 Ga0436364_1139057
189 Ga0436364_1460929
190 Ga0436360_0049554
191 Ga0436360_0830505
192 Ga0436361_0175765
193 Ga0436361_0455658
194 Ga0436361_0525718
195 Ga0436361_0556006
196 Ga0436361_0637260
197 Ga0436361_0797882
198 Ga0436363_0881410
199 Ga0436363_1327259
200 Ga0436362_1090933
201 Ga0451577_0000505
202 Ga0451577_0143945
203 Ga0451577_0173213
204 Ga0453684_0000001
205 Ga0451576_0159612
206 Ga0495592_0000006
207 Ga0495629_0206054
208 Ga0495662_0002830
209 Ga0495664_0017469
210 Ga0495618_0002591
211 Ga0495628_0000235
212 Ga0495630_0016517
213 Ga0495666_0023768
214 Ga0495652_0070984
215 Ga0495586_0000275
216 Ga0495645_0024475
217 Ga0495634_0191072
218 Ga0495599_0008601
219 Ga0495658_0008243
220 Ga0495658_0081476
221 Ga0495658_0141931
222 Ga0495604_0215745
223 Ga0495674_0024629
224 Ga0501031_0001565
225 Ga0501032_0071959
226 Ga0501033_0028927
227 Ga0501036_0030192
228 Ga0501037_0000020
229 Ga0501038_0118309
230 Ga0501039_0001756
231 Ga0501039_0435057
232 Ga0501043_0000064
233 Ga0501043_0000514
234 Ga0501047_0015403
235 Ga0501047_0058550
236 Ga0501047_0330098
237 Ga0501070_0000840
238 Ga0501071_0058152
239 Ga0501083_0011136
240 Ga0501035_0000216
241 Ga0501044_0000510
242 nmdc:mga06r32_222849_c1
243 nmdc:mga08y16_112275_c1
244 nmdc:mga0a205_544500_c1
245 2795797722
246 8033689756

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

44

103

0.99

PF03466

LysR_substrate

LysR substrate binding domain

127

336

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ihs-assembly1.cif.gz_A crystal structure of benm_dbd/catb site 1 dna complex 0.9641 1 86
4ihs-assembly1.cif.gz_B crystal structure of benm_dbd/catb site 1 dna complex 0.9572 1 88
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.9523 1 85
4ihs-assembly3.cif.gz_C crystal structure of benm_dbd/catb site 1 dna complex 0.952 1 85
5xxp-assembly1.cif.gz_B crystal structure of cbnr_dbd-dna complex 0.9447 1 86
ID Description Score Start End Superfamily
af_P23841_7_96_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9924 1 88 1.10.10.10
af_Q47141_1_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9885 1 78 1.10.10.10
af_Q2FVT4_1_85_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9836 1 83 1.10.10.10
af_P77309_1_86_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9828 1 83 1.10.10.10
af_P37641_3_87_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9784 2 81 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A6F9E7D7-F1-model_v4 LysR family transcriptional regulator 0.9173 106 295 GO:0003677
GO:0003700
GO:0032993
AF-A0A6F9E7D7-F1-model_v4 LysR family transcriptional regulator 0.8907 106 295 GO:0003677
GO:0003700
GO:0032993
AF-A0A2S9FJT7-F1-model_v4 LysR family transcriptional regulator 0.8707 105 284 GO:0003677
GO:0003700
GO:0032993
AF-A0A2S9FJT7-F1-model_v4 LysR family transcriptional regulator 0.8534 105 284 GO:0003677
GO:0003700
GO:0032993
AF-A0A1X4HXC7-F1-model_v4 LysR family transcriptional regulator 0.8347 106 294 GO:0003677
GO:0003700
GO:0032993

Map