F119513

General Info

Members Datasets Scaffolds Average Seq Length
123 49 123 437

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0000373|Ga0453684_0000373_11339_12859
Length 506
Sequence MNPLTSKTYATFGSSKISIVASLSKSLYNETKDATFIYVEFKKKSPRAQLRLISQTTWLYNTLLLPITISRQKNGAHKELFVNFEKICILGLGYIGLPTASMFATHGLKVVGVDVNQHVVETLRAGKLHIHEPGLEEAVKKAVETGNLSVATTPEPADAFIIAVPTPFYDDKRADMRAVTSATEAIVPHLRKGNLVVLESTSPPLTTVNLVTPILEKSGLKAGSDFFVAYSPERVLPGQILRELIENARVIGGITPESAEAGHKLYATFVKGDIIQTTATTAEMVKLMENTYRDVNIAIANEFARLADRFGIDVWEAIGLANLHPRVKILSPGPGVGGHCISVDPWFLVEAAPDLTPLILTARKVNDSQPHFVLGMVKTALGGSLHKKKIAALGLAYKPDVDDLRESPAVEVVHMLQEEGALIKCFEPFKPDAALPELTLVPTLDAALADADLILLLVNHTQFCALTPESLAASTPARLLVDTVNGWKKQDWASAGFKIQRLGVRK

Samples

Sample ID Description Type Environment
1 2162886006 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v1 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
6 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
7 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
8 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
9 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
10 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
11 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
12 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
13 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
14 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
15 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
16 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
17 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
18 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
21 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
25 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
26 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
27 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
28 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
29 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
30 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
31 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
32 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
33 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
34 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
35 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
36 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
37 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
38 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
39 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
40 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
41 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
42 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
43 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
44 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
45 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
46 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
47 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
48 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
49 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 86.99
Stem 0
Stem Tuber 0
Unclassified 13.01

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL3b_contig_776222 2162886006 Bacteria 2685
2 SwRhRL2b_contig_894093 2162886007 Bacteria 9255
3 JGI25406J46586_10004543 3300003203 Bacteria 6461
4 Ga0065707_10082328 3300005295 Bacteria 16804
5 Ga0065707_10082601 3300005295 Bacteria 13465
6 Ga0065707_10116703 3300005295 Bacteria 2230
7 Ga0070700_100013699 3300005441 Bacteria 4560
8 Ga0070706_100146042 3300005467 Bacteria 2208
9 Ga0070707_100055997 3300005468 Bacteria 3781
10 Ga0070698_100043098 3300005471 Bacteria 4628
11 Ga0070699_100016517 3300005518 Bacteria 6337
12 Ga0070699_100083350 3300005518 Bacteria 2789
13 Ga0070696_100155765 3300005546 Unclassified 1680
14 Ga0068859_100011914 3300005617 Bacteria 8737
15 Ga0081539_10002002 3300005985 Bacteria 30906
16 Ga0075427_10000090 3300006194 Bacteria 7322
17 Ga0075433_10007132 3300006852 Bacteria 8849
18 Ga0075434_100101734 3300006871 Unclassified 2880
19 Ga0075429_100005319 3300006880 Bacteria 11080
20 Ga0075429_100202074 3300006880 Unclassified 1741
21 Ga0097620_100011914 3300006931 Bacteria 8737
22 Ga0111539_10089250 3300009094 Bacteria 3622
23 Ga0114129_10004095 3300009147 Bacteria 20597
24 Ga0114129_10010331 3300009147 Bacteria 13317
25 Ga0114129_10034228 3300009147 Bacteria 7174
26 Ga0114129_10128684 3300009147 Bacteria 3480
27 Ga0114129_10246039 3300009147 Bacteria 2402
28 Ga0213876_10001178 3300021384 Bacteria 16529
29 Ga0213876_10002201 3300021384 Bacteria 11504
30 Ga0213876_10026477 3300021384 Bacteria 3057
31 Ga0207646_10051313 3300025922 Bacteria 3691
32 Ga0207675_100049082 3300026118 Bacteria 3940
33 Ga0268265_10156551 3300028380 Bacteria 1929
34 Ga0268265_10201225 3300028380 Bacteria 1728
35 Ga0265318_10001809 3300028577 Bacteria 12157
36 Ga0265330_10016375 3300031235 Bacteria 3422
37 Ga0265328_10038255 3300031239 Bacteria 1771
38 Ga0265325_10062943 3300031241 Bacteria 1879
39 Ga0265340_10000496 3300031247 Bacteria 21514
40 Ga0265327_10009599 3300031251 Bacteria 6952
41 Ga0265313_10020451 3300031595 Bacteria 3652
42 Ga0316579_10004641 3300031691 Bacteria 5468
43 Ga0316578_10005610 3300031728 Bacteria 6108
44 Ga0316582_0000102 3300036647 Bacteria 23595
45 Ga0316582_0026210 3300036647 Bacteria 3507
46 Ga0316581_0009085 3300037588 Bacteria 2724
47 Ga0436364_1131285 3300037853 Bacteria 14064
48 Ga0436364_1214756 3300037853 Bacteria 3513
49 Ga0400483_122153 3300039062 Bacteria 36694
50 Ga0400483_284656 3300039062 Bacteria 17935
51 Ga0436365_0063185 3300039437 Bacteria 17116
52 Ga0436365_0358239 3300039437 Bacteria 4076
53 Ga0436365_0367590 3300039437 Bacteria 2822
54 Ga0436365_0413643 3300039437 Bacteria 15994
55 Ga0436365_0753461 3300039437 Bacteria 9698
56 Ga0436365_0817272 3300039437 Bacteria 31363
57 Ga0436365_1425608 3300039437 Bacteria 7569
58 Ga0436365_1796951 3300039437 Bacteria 2081
59 Ga0436363_1614707 3300039450 Bacteria 2655
60 Ga0451577_0001316 3300042876 Bacteria 33916
61 Ga0451577_0009501 3300042876 Bacteria 9360
62 Ga0451577_0013259 3300042876 Bacteria 7723
63 Ga0451577_0015869 3300042876 Bacteria 6988
64 Ga0451577_0104066 3300042876 Bacteria 2537
65 Ga0451577_0158312 3300042876 Bacteria 2039
66 Ga0451577_0173596 3300042876 Bacteria 1942
67 Ga0451577_0175425 3300042876 Bacteria 1932
68 Ga0453683_0000129 3300044673 Bacteria 110609
69 Ga0453683_0014474 3300044673 Bacteria 5119
70 Ga0453683_0059941 3300044673 Bacteria 2379
71 Ga0453683_0103319 3300044673 Bacteria 1789
72 Ga0453684_0000003 3300044712 Bacteria 1481694
73 Ga0453684_0000056 3300044712 Bacteria 513389
74 Ga0453684_0000373 3300044712 Bacteria 183940
75 Ga0453684_0000564 3300044712 Bacteria 139611
76 Ga0453684_0000591 3300044712 Bacteria 134711
77 Ga0453684_0001737 3300044712 Bacteria 58357
78 Ga0453684_0002223 3300044712 Bacteria 48145
79 Ga0453684_0002374 3300044712 Bacteria 45985
80 Ga0453684_0004438 3300044712 Bacteria 29623
81 Ga0453684_0006135 3300044712 Bacteria 23142
82 Ga0453684_0007064 3300044712 Bacteria 20973
83 Ga0453684_0008174 3300044712 Archaea 18876
84 Ga0453684_0010121 3300044712 Bacteria 16200
85 Ga0453684_0011023 3300044712 Bacteria 15272
86 Ga0453684_0011299 3300044712 Bacteria 15019
87 Ga0453684_0016492 3300044712 Bacteria 11543
88 Ga0453684_0024538 3300044712 Bacteria 8808
89 Ga0453684_0024680 3300044712 Bacteria 8770
90 Ga0453684_0033043 3300044712 Bacteria 7221
91 Ga0453684_0036934 3300044712 Bacteria 6718
92 Ga0453684_0051172 3300044712 Bacteria 5420
93 Ga0453684_0057898 3300044712 Bacteria 5009
94 Ga0453684_0066651 3300044712 Bacteria 4583
95 Ga0453684_0084360 3300044712 Bacteria 3951
96 Ga0453684_0087384 3300044712 Bacteria 3864
97 Ga0453684_0112447 3300044712 Bacteria 3305
98 Ga0453684_0160425 3300044712 Bacteria 2660
99 Ga0453684_0173273 3300044712 Bacteria 2540
100 Ga0453684_0204240 3300044712 Bacteria 2301
101 Ga0453684_0216801 3300044712 Bacteria 2220
102 Ga0453684_0352659 3300044712 Bacteria 1658
103 Ga0453684_0367294 3300044712 Bacteria 1619
104 Ga0466960_0031750 3300044901 Bacteria 2439
105 Ga0451576_0000189 3300045051 Bacteria 155001
106 Ga0451576_0000817 3300045051 Bacteria 60779
107 Ga0451576_0005797 3300045051 Bacteria 15359
108 Ga0451576_0022085 3300045051 Bacteria 6905
109 Ga0451576_0082779 3300045051 Bacteria 3338
110 Ga0451576_0088624 3300045051 Bacteria 3219
111 Ga0451576_0120440 3300045051 Bacteria 2732
112 Ga0451576_0138835 3300045051 Unclassified 2535
113 Ga0451576_0176806 3300045051 Unclassified 2228
114 Ga0501072_0190255 3300049588 Unclassified 1637
115 Ga0501073_0088812 3300049589 Bacteria 2149
116 Ga0501075_0005914 3300049591 Bacteria 8370
117 nmdc:mga05p37_28310_c1 3300050507 Bacteria 6833
118 nmdc:mga05p37_4356_c1 3300050507 Bacteria 16522
119 nmdc:mga05p37_58955_c1 3300050507 Bacteria 4728
120 nmdc:mga05p37_61843_c1 3300050507 Bacteria 4609
121 nmdc:mga09592_197747_c1 3300050508 Unclassified 1741
122 nmdc:mga09592_5563_c1 3300050508 Bacteria 10258
123 nmdc:mga0a205_69934_c1 3300050515 Bacteria 3389

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300009147 Ga0114129_10128684 Ga0114129_101286844 406
2 3300050508 nmdc:mga09592_197747_c1 nmdc:mga09592_197747_c1_118_1338 406
3 3300044673 Ga0453683_0103319 Ga0453683_0103319_261_1550 407
4 3300037853 Ga0436364_1131285 Ga0436364_1131285_6453_7685 410
5 3300039437 Ga0436365_0817272 Ga0436365_0817272_22825_24057 410
6 3300039437 Ga0436365_1796951 Ga0436365_1796951_313_1563 413
7 3300044901 Ga0466960_0031750 Ga0466960_0031750_505_1752 413
8 3300044712 Ga0453684_0008174 Ga0453684_0008174_13337_14584 415
9 3300036647 Ga0316582_0000102 Ga0316582_0000102_8878_10152 416
10 3300042876 Ga0451577_0158312 Ga0451577_0158312_396_1646 416
11 3300044712 Ga0453684_0033043 Ga0453684_0033043_5070_6320 416
12 3300044712 Ga0453684_0000056 Ga0453684_0000056_482841_484094 417
13 3300039062 Ga0400483_122153 Ga0400483_122153_1854_3116 418
14 3300039062 Ga0400483_284656 Ga0400483_284656_1952_3214 418
15 3300031235 Ga0265330_10016375 Ga0265330_100163753 420
16 3300042876 Ga0451577_0009501 Ga0451577_0009501_158_1456 424
17 3300042876 Ga0451577_0104066 Ga0451577_0104066_526_1800 424
18 3300042876 Ga0451577_0175425 Ga0451577_0175425_10_1284 424
19 3300044712 Ga0453684_0000373 Ga0453684_0000373_11339_12859 424
20 3300044712 Ga0453684_0010121 Ga0453684_0010121_8641_9918 424
21 3300044712 Ga0453684_0011023 Ga0453684_0011023_4281_5579 424
22 3300044712 Ga0453684_0057898 Ga0453684_0057898_1317_2594 424
23 3300044712 Ga0453684_0204240 Ga0453684_0204240_1005_2285 424
24 3300044712 Ga0453684_0216801 Ga0453684_0216801_807_2081 424
25 3300044712 Ga0453684_0367294 Ga0453684_0367294_148_1425 424
26 3300045051 Ga0451576_0120440 Ga0451576_0120440_692_1966 424
27 3300044712 Ga0453684_0002374 Ga0453684_0002374_12316_13596 425
28 3300044673 Ga0453683_0059941 Ga0453683_0059941_746_2029 427
29 3300021384 Ga0213876_10001178 Ga0213876_100011783 428
30 3300021384 Ga0213876_10026477 Ga0213876_100264772 430
31 3300039437 Ga0436365_0063185 Ga0436365_0063185_356_2014 430
32 3300021384 Ga0213876_10002201 Ga0213876_100022012 431
33 3300037853 Ga0436364_1214756 Ga0436364_1214756_166_1482 431
34 3300039437 Ga0436365_0358239 Ga0436365_0358239_2359_3696 431
35 3300039437 Ga0436365_0367590 Ga0436365_0367590_864_2264 431
36 3300039437 Ga0436365_0413643 Ga0436365_0413643_3236_4552 431
37 3300039437 Ga0436365_1425608 Ga0436365_1425608_4370_5665 431
38 3300039450 Ga0436363_1614707 Ga0436363_1614707_486_1886 431
39 3300044712 Ga0453684_0004438 Ga0453684_0004438_27563_28900 431
40 3300044712 Ga0453684_0024538 Ga0453684_0024538_4113_5414 431
41 3300005467 Ga0070706_100146042 Ga0070706_1001460422 433
42 3300039437 Ga0436365_0753461 Ga0436365_0753461_2467_3777 433
43 3300044712 Ga0453684_0016492 Ga0453684_0016492_6894_8216 433
44 3300005295 Ga0065707_10116703 Ga0065707_101167032 434
45 3300005468 Ga0070707_100055997 Ga0070707_1000559973 434
46 3300006880 Ga0075429_100005319 Ga0075429_10000531910 434
47 3300006880 Ga0075429_100202074 Ga0075429_1002020742 434
48 3300009147 Ga0114129_10010331 Ga0114129_1001033112 434
49 3300025922 Ga0207646_10051313 Ga0207646_100513132 434
50 3300028577 Ga0265318_10001809 Ga0265318_100018093 434
51 3300031239 Ga0265328_10038255 Ga0265328_100382552 434
52 3300031241 Ga0265325_10062943 Ga0265325_100629432 434
53 3300031247 Ga0265340_10000496 Ga0265340_100004966 434
54 3300031251 Ga0265327_10009599 Ga0265327_100095992 434
55 3300031595 Ga0265313_10020451 Ga0265313_100204514 434
56 3300042876 Ga0451577_0015869 Ga0451577_0015869_3655_5061 434
57 3300042876 Ga0451577_0173596 Ga0451577_0173596_33_1340 434
58 3300044712 Ga0453684_0000003 Ga0453684_0000003_1114630_1115937 434
59 3300044712 Ga0453684_0002223 Ga0453684_0002223_5292_6596 434
60 3300044712 Ga0453684_0036934 Ga0453684_0036934_862_2268 434
61 3300045051 Ga0451576_0000189 Ga0451576_0000189_21587_22894 434
62 3300045051 Ga0451576_0005797 Ga0451576_0005797_11467_12834 434
63 3300045051 Ga0451576_0088624 Ga0451576_0088624_670_2076 434
64 3300049591 Ga0501075_0005914 Ga0501075_0005914_5347_6651 434
65 3300050507 nmdc:mga05p37_61843_c1 nmdc:mga05p37_61843_c1_2635_3939 434
66 3300050508 nmdc:mga09592_5563_c1 nmdc:mga09592_5563_c1_3454_4758 434
67 3300005518 Ga0070699_100016517 Ga0070699_1000165173 435
68 3300005518 Ga0070699_100083350 Ga0070699_1000833502 435
69 3300009147 Ga0114129_10004095 Ga0114129_1000409519 435
70 3300044712 Ga0453684_0066651 Ga0453684_0066651_2627_3934 435
71 3300049589 Ga0501073_0088812 Ga0501073_0088812_100_1533 435
72 3300050507 nmdc:mga05p37_4356_c1 nmdc:mga05p37_4356_c1_4890_6260 435
73 3300009094 Ga0111539_10089250 Ga0111539_100892503 436
74 3300005546 Ga0070696_100155765 Ga0070696_1001557651 437
75 3300006852 Ga0075433_10007132 Ga0075433_100071324 437
76 3300006871 Ga0075434_100101734 Ga0075434_1001017343 437
77 3300009147 Ga0114129_10034228 Ga0114129_100342282 437
78 3300042876 Ga0451577_0013259 Ga0451577_0013259_4123_5436 437
79 3300044673 Ga0453683_0000129 Ga0453683_0000129_73684_74997 437
80 3300044673 Ga0453683_0014474 Ga0453683_0014474_1486_2799 437
81 3300044712 Ga0453684_0051172 Ga0453684_0051172_2788_4101 437
82 3300044712 Ga0453684_0087384 Ga0453684_0087384_1267_2580 437
83 3300044712 Ga0453684_0112447 Ga0453684_0112447_12_1325 437
84 3300044712 Ga0453684_0352659 Ga0453684_0352659_334_1647 437
85 3300045051 Ga0451576_0000817 Ga0451576_0000817_2060_3373 437
86 3300045051 Ga0451576_0022085 Ga0451576_0022085_4165_5478 437
87 3300045051 Ga0451576_0176806 Ga0451576_0176806_106_1419 437
88 3300050507 nmdc:mga05p37_58955_c1 nmdc:mga05p37_58955_c1_1389_2702 437
89 3300050515 nmdc:mga0a205_69934_c1 nmdc:mga0a205_69934_c1_231_1544 437
90 3300031691 Ga0316579_10004641 Ga0316579_100046415 438
91 3300031728 Ga0316578_10005610 Ga0316578_100056104 438
92 3300036647 Ga0316582_0026210 Ga0316582_0026210_1180_2496 438
93 3300037588 Ga0316581_0009085 Ga0316581_0009085_1236_2552 438
94 3300044712 Ga0453684_0084360 Ga0453684_0084360_1791_3107 438
95 3300045051 Ga0451576_0082779 Ga0451576_0082779_1513_2829 438
96 3300005295 Ga0065707_10082601 Ga0065707_1008260111 439
97 3300044712 Ga0453684_0001737 Ga0453684_0001737_24389_25738 439
98 3300044712 Ga0453684_0160425 Ga0453684_0160425_1291_2610 439
99 3300044712 Ga0453684_0173273 Ga0453684_0173273_1171_2490 439
100 3300003203 JGI25406J46586_10004543 JGI25406J46586_100045435 440
101 3300005985 Ga0081539_10002002 Ga0081539_1000200222 440
102 3300006194 Ga0075427_10000090 Ga0075427_100000904 440
103 3300009147 Ga0114129_10246039 Ga0114129_102460393 440
104 3300026118 Ga0207675_100049082 Ga0207675_1000490823 440
105 3300028380 Ga0268265_10201225 Ga0268265_102012251 440
106 3300044712 Ga0453684_0000564 Ga0453684_0000564_97335_98663 442
107 3300044712 Ga0453684_0000591 Ga0453684_0000591_127855_129297 442
108 3300044712 Ga0453684_0024680 Ga0453684_0024680_4932_6260 442
109 3300049588 Ga0501072_0190255 Ga0501072_0190255_210_1538 442
110 2162886006 SwRhRL3b_contig_776222 SwRhRL3b_0301.00001660 444
111 2162886007 SwRhRL2b_contig_894093 SwRhRL2b_0545.00004230 444
112 3300005295 Ga0065707_10082328 Ga0065707_100823287 444
113 3300005441 Ga0070700_100013699 Ga0070700_1000136995 444
114 3300005471 Ga0070698_100043098 Ga0070698_1000430981 444
115 3300005617 Ga0068859_100011914 Ga0068859_1000119146 444
116 3300006931 Ga0097620_100011914 Ga0097620_1000119146 444
117 3300028380 Ga0268265_10156551 Ga0268265_101565512 444
118 3300042876 Ga0451577_0001316 Ga0451577_0001316_3981_5318 444
119 3300044712 Ga0453684_0006135 Ga0453684_0006135_6806_8143 444
120 3300044712 Ga0453684_0007064 Ga0453684_0007064_5143_6480 444
121 3300044712 Ga0453684_0011299 Ga0453684_0011299_10160_11500 444
122 3300045051 Ga0451576_0138835 Ga0451576_0138835_282_1616 444
123 3300050507 nmdc:mga05p37_28310_c1 nmdc:mga05p37_28310_c1_4983_6317 444

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00984

UDPG_MGDP_dh

UDP-glucose/GDP-mannose dehydrogenase family, central domain

280

368

0.97

PF03720

UDPG_MGDP_dh_C

UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

391

489

0.95

PF03721

UDPG_MGDP_dh_N

UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain

85

265

0.95

PF03446

NAD_binding_2

NAD binding domain of 6-phosphogluconate dehydrogenase

86

222

0.81

PF02558

ApbA

Ketopantoate reductase PanE/ApbA

87

190

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
3nrn-assembly1.cif.gz_A crystal structure of pf1083 protein from pyrococcus furiosus, northeast structural genomics consortium target pfr223 0.9531 4 36
3ka7-assembly1.cif.gz_A crystal structure of an oxidoreductase from methanosarcina mazei. northeast structural genomics consortium target id mar208 0.9449 4 36
7fgp-assembly1.cif.gz_A crystal structure of aureimonas altamirenisis flavin-containing opine dehydrogenase (fad-bound form) 0.9382 2 35
3zdn-assembly1.cif.gz_A d11-c mutant of monoamine oxidase from aspergillus niger 0.9306 4 34
7eme-assembly1.cif.gz_B putative leptospira interrogans recombinant l-amino acid oxidase 0.9251 4 35
ID Description Score Start End Superfamily
af_Q54HR9_1_452_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9648 6 36 3.50.50.60
3ojoB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9596 4 207 3.40.50.720
3ojoB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9549 4 207 3.40.50.720
af_Q57871_2_201_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9498 3 207 3.40.50.720
4r16B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9471 6 207 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A1V6DDK3-F1-model_v4 UDP-glucose 6-dehydrogenase YwqF (EC 1.1.1.22) 0.979 291 430 GO:0000271
GO:0003979
GO:0016628
GO:0051287
AF-K1TTF2-F1-model_v4 Membrane protein containing UDP-glucose/GDP-mannose dehydrogenase (EC 1.1.1.-) 0.9755 4 72 GO:0016020
GO:0016616
GO:0051287
AF-A0A832S519-F1-model_v4 UDP-N-acetyl-D-mannosamine dehydrogenase (EC 1.1.1.336) (UDP-ManNAc 6-dehydrogenase) 0.9743 4 195 GO:0000271
GO:0016616
GO:0016628
GO:0051287
AF-A0A3M0XPJ8-F1-model_v4 UDP-glucose/GDP-mannose dehydrogenase N-terminal domain-containing protein 0.9708 1 148 GO:0000271
GO:0016616
GO:0016628
GO:0051287
AF-A0A7C7E1F8-F1-model_v4 UDP-N-acetyl-D-mannosamine dehydrogenase 0.9708 4 151 GO:0000271
GO:0016616
GO:0016628
GO:0051287

Feature Viewer

pLDDT pTM Quality
93.92 0.89 High
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Predicted Structure (AlphaFold2)

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