F110795

General Info

Members Datasets Scaffolds Average Seq Length
121 75 242 374

Family's Representative Sequence

Representative Sequence 3300031824|Ga0307413_10028222|Ga0307413_100282223
Length 438
Sequence VLVSVSIRGKALICVSRGAGAAFICGNSFVHVTQVTGLLPDSGILSWNVISPHIRANTMATRQRRWRRVEKKALKRLRKIAAPAPEVVSDPIESAQAAGLRYVSDTQPGIRRKRAGKGFAYVGPDGKTIRDAKELARIRSLAIPPAYTDVWICPSPNGHIQATGRDARGRKQYRYHPKWREVRDETKFGRMLAFSEALPKIRGRVERDLNLPGLPREKVLATVVRLLECTCIRVGNDEYAKSNRSFGLTTLQDRHVEISGANLRFEFRGKSGKTHKVDLNDRRLARIVQRCQALPGEDLFQYIDDEGVRQTVGSGDVNDYIRDISGQEFTAKDFRTWNGTLLAVEALTEVGAWGTQRQAKSNVLRAIDRVAEQLNNTRSVCRKYYVHPAVFESYLAGSMLAQLQNGTKQTVTNDLTADEAAVVRLLRHHLANGVNGKQ

Samples

Sample ID Description Type Environment
1 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
6 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
24 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
25 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
30 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
31 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
32 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
39 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
41 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
42 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
43 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
44 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
45 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
46 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
47 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
48 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
49 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
50 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
51 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
52 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
53 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
54 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
55 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
56 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
57 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
58 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
59 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
60 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
61 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
62 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
63 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
64 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
65 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
66 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
67 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
68 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
69 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
70 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
71 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
72 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
73 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
74 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
75 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 9.92
Rhizosphere 82.64
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307413_10028222 3300031824 Bacteria 3122
2 Ga0070683_100253087 3300005329 Bacteria 1675
3 Ga0070688_100008920 3300005365 Bacteria 5460
4 Ga0070714_100000124 3300005435 Bacteria 60894
5 Ga0070708_100144033 3300005445 Bacteria 2212
6 Ga0070681_10063991 3300005458 Bacteria 3650
7 Ga0070681_10090750 3300005458 Bacteria 3005
8 Ga0070706_100369003 3300005467 Bacteria 1337
9 Ga0070707_100078144 3300005468 Bacteria 3193
10 Ga0070699_100007573 3300005518 Bacteria 9441
11 Ga0070684_100041054 3300005535 Bacteria 3987
12 Ga0070695_100028442 3300005545 Bacteria 3469
13 Ga0070665_100000134 3300005548 Bacteria 139586
14 Ga0068854_100050635 3300005578 Bacteria 2973
15 Ga0068859_100011422 3300005617 Bacteria 8928
16 Ga0068861_100322329 3300005719 Bacteria 1346
17 Ga0068863_100035841 3300005841 Bacteria 4724
18 Ga0068860_100385974 3300005843 Bacteria 1383
19 Ga0068860_100520694 3300005843 Bacteria 1189
20 Ga0081539_10000226 3300005985 Bacteria 132618
21 Ga0097621_100238292 3300006237 Bacteria 1590
22 Ga0075428_100001132 3300006844 Bacteria 28477
23 Ga0075428_100116252 3300006844 Bacteria 2913
24 Ga0075430_100019443 3300006846 Bacteria 5777
25 Ga0075431_100050541 3300006847 Bacteria 4286
26 Ga0075431_100166501 3300006847 Bacteria 2266
27 Ga0075433_10004636 3300006852 Bacteria 10725
28 Ga0075436_100002334 3300006914 Bacteria 13092
29 Ga0075436_100103240 3300006914 Bacteria 1987
30 Ga0097620_100011422 3300006931 Bacteria 8928
31 Ga0111539_10044794 3300009094 Bacteria 5298
32 Ga0105245_10181287 3300009098 Bacteria 2012
33 Ga0114129_10002644 3300009147 Bacteria 24929
34 Ga0105246_10081621 3300011119 Bacteria 2305
35 Ga0157379_10161459 3300014968 Bacteria 2023
36 Ga0213875_10001692 3300021388 Bacteria 13879
37 Ga0207707_10222144 3300025912 Bacteria 1644
38 Ga0207695_10149432 3300025913 Bacteria 2276
39 Ga0207661_10212638 3300025944 Bacteria 1705
40 Ga0207640_10027221 3300025981 Bacteria 3481
41 Ga0207678_10094123 3300026067 Bacteria 2560
42 Ga0207675_100389125 3300026118 Bacteria 1372
43 Ga0207428_10012397 3300027907 Bacteria 7490
44 Ga0268264_10411741 3300028381 Bacteria 1302
45 Ga0307408_100024779 3300031548 Bacteria 4101
46 Ga0307413_10037157 3300031824 Bacteria 2811
47 Ga0307413_10168290 3300031824 Bacteria 1548
48 Ga0307410_10000890 3300031852 Bacteria 12765
49 Ga0307410_10030878 3300031852 Bacteria 3429
50 Ga0307410_10038850 3300031852 Bacteria 3121
51 Ga0307410_10101227 3300031852 Bacteria 2065
52 Ga0307410_10196049 3300031852 Bacteria 1539
53 Ga0307406_10023114 3300031901 Bacteria 3697
54 Ga0307406_10036208 3300031901 Bacteria 3039
55 Ga0307406_10040863 3300031901 Bacteria 2886
56 Ga0307407_10090917 3300031903 Bacteria 1870
57 Ga0307409_100001397 3300031995 Bacteria 11798
58 Ga0307409_100014002 3300031995 Bacteria 5194
59 Ga0307409_100024320 3300031995 Bacteria 4222
60 Ga0307409_100025054 3300031995 Bacteria 4175
61 Ga0307409_100028683 3300031995 Bacteria 3970
62 Ga0307409_100181915 3300031995 Bacteria 1862
63 Ga0307416_100003711 3300032002 Bacteria 9052
64 Ga0307416_100008198 3300032002 Bacteria 6716
65 Ga0307416_100018671 3300032002 Bacteria 4894
66 Ga0307416_100084594 3300032002 Bacteria 2696
67 Ga0307416_100149113 3300032002 Bacteria 2141
68 Ga0307414_10013159 3300032004 Bacteria 4918
69 Ga0307414_10016649 3300032004 Bacteria 4475
70 Ga0307414_10043545 3300032004 Bacteria 3059
71 Ga0307414_10044116 3300032004 Bacteria 3042
72 Ga0307414_10054690 3300032004 Bacteria 2791
73 Ga0307414_10071334 3300032004 Bacteria 2505
74 Ga0307411_10015226 3300032005 Bacteria 4313
75 Ga0307411_10065056 3300032005 Bacteria 2444
76 Ga0307411_10069037 3300032005 Bacteria 2385
77 Ga0307411_10144031 3300032005 Bacteria 1761
78 Ga0307415_100005866 3300032126 Bacteria 6568
79 Ga0307415_100010266 3300032126 Bacteria 5294
80 Ga0307415_100039405 3300032126 Bacteria 3123
81 Ga0307415_100042717 3300032126 Bacteria 3019
82 Ga0307415_100050957 3300032126 Bacteria 2807
83 Ga0307415_100179221 3300032126 Bacteria 1661
84 Ga0373931_0042634 3300035691 Bacteria 2387
85 Ga0436364_0187275 3300037853 Bacteria 5504
86 Ga0436364_0250839 3300037853 Bacteria 7350
87 Ga0436364_0458543 3300037853 Bacteria 3324
88 Ga0436364_0558108 3300037853 Bacteria 39499
89 Ga0436364_0641102 3300037853 Bacteria 17591
90 Ga0436364_0791623 3300037853 Bacteria 5466
91 Ga0436364_0844537 3300037853 Bacteria 2894
92 Ga0436364_1278930 3300037853 Bacteria 1340
93 Ga0436361_0651334 3300039447 Bacteria 20505
94 Ga0439439_0003906 3300041406 Bacteria 3319
95 Ga0439458_0017054 3300042157 Bacteria 1655
96 Ga0439434_0013127 3300042435 Bacteria 2457
97 Ga0466964_0024006 3300044706 Bacteria 2373
98 Ga0466967_0005308 3300045976 Bacteria 8896
99 Ga0496100_0169961 3300048903 Bacteria 1569
100 Ga0496100_0250062 3300048903 Bacteria 1311
101 Ga0496104_0094114 3300048907 Bacteria 2866
102 Ga0496106_0142291 3300048909 Bacteria 1887
103 Ga0496108_0000047 3300048911 Bacteria 133604
104 Ga0496108_0180755 3300048911 Bacteria 1826
105 Ga0496109_0043148 3300048912 Bacteria 4087
106 Ga0496109_0251969 3300048912 Bacteria 1663
107 Ga0496110_0300317 3300048913 Bacteria 1462
108 Ga0496113_0043010 3300048916 Bacteria 3341
109 Ga0496114_0027070 3300048917 Bacteria 4697
110 Ga0496114_0288347 3300048917 Bacteria 1448
111 Ga0501067_0002788 3300049583 Bacteria 9612
112 Ga0501069_0070562 3300049585 Bacteria 1957
113 Ga0501257_015638 3300049686 Bacteria 1754
114 Ga0501229_000682 3300049706 Bacteria 3819
115 Ga0501268_014337 3300049765 Bacteria 1290
116 nmdc:mga05p37_446_c1 3300050507 Bacteria 44825
117 nmdc:mga09592_3167_c1 3300050508 Bacteria 13368
118 nmdc:mga06r32_115236_c1 3300050510 Bacteria 2646
119 nmdc:mga0n895_203502_c1 3300050512 Bacteria 2010
120 nmdc:mga08x19_5359_c1 3300050514 Bacteria 7584
121 nmdc:mga0a205_3025_c1 3300050515 Bacteria 14900
122 Ga0307413_10028222
123 Ga0070683_100253087
124 Ga0070688_100008920
125 Ga0070714_100000124
126 Ga0070708_100144033
127 Ga0070681_10063991
128 Ga0070681_10090750
129 Ga0070706_100369003
130 Ga0070707_100078144
131 Ga0070699_100007573
132 Ga0070684_100041054
133 Ga0070695_100028442
134 Ga0070665_100000134
135 Ga0068854_100050635
136 Ga0068859_100011422
137 Ga0068861_100322329
138 Ga0068863_100035841
139 Ga0068860_100385974
140 Ga0068860_100520694
141 Ga0081539_10000226
142 Ga0097621_100238292
143 Ga0075428_100001132
144 Ga0075428_100116252
145 Ga0075430_100019443
146 Ga0075431_100050541
147 Ga0075431_100166501
148 Ga0075433_10004636
149 Ga0075436_100002334
150 Ga0075436_100103240
151 Ga0097620_100011422
152 Ga0111539_10044794
153 Ga0105245_10181287
154 Ga0114129_10002644
155 Ga0105246_10081621
156 Ga0157379_10161459
157 Ga0213875_10001692
158 Ga0207707_10222144
159 Ga0207695_10149432
160 Ga0207661_10212638
161 Ga0207640_10027221
162 Ga0207678_10094123
163 Ga0207675_100389125
164 Ga0207428_10012397
165 Ga0268264_10411741
166 Ga0307408_100024779
167 Ga0307413_10037157
168 Ga0307413_10168290
169 Ga0307410_10000890
170 Ga0307410_10030878
171 Ga0307410_10038850
172 Ga0307410_10101227
173 Ga0307410_10196049
174 Ga0307406_10023114
175 Ga0307406_10036208
176 Ga0307406_10040863
177 Ga0307407_10090917
178 Ga0307409_100001397
179 Ga0307409_100014002
180 Ga0307409_100024320
181 Ga0307409_100025054
182 Ga0307409_100028683
183 Ga0307409_100181915
184 Ga0307416_100003711
185 Ga0307416_100008198
186 Ga0307416_100018671
187 Ga0307416_100084594
188 Ga0307416_100149113
189 Ga0307414_10013159
190 Ga0307414_10016649
191 Ga0307414_10043545
192 Ga0307414_10044116
193 Ga0307414_10054690
194 Ga0307414_10071334
195 Ga0307411_10015226
196 Ga0307411_10065056
197 Ga0307411_10069037
198 Ga0307411_10144031
199 Ga0307415_100005866
200 Ga0307415_100010266
201 Ga0307415_100039405
202 Ga0307415_100042717
203 Ga0307415_100050957
204 Ga0307415_100179221
205 Ga0373931_0042634
206 Ga0436364_0187275
207 Ga0436364_0250839
208 Ga0436364_0458543
209 Ga0436364_0558108
210 Ga0436364_0641102
211 Ga0436364_0791623
212 Ga0436364_0844537
213 Ga0436364_1278930
214 Ga0436361_0651334
215 Ga0439439_0003906
216 Ga0439458_0017054
217 Ga0439434_0013127
218 Ga0466964_0024006
219 Ga0466967_0005308
220 Ga0496100_0169961
221 Ga0496100_0250062
222 Ga0496104_0094114
223 Ga0496106_0142291
224 Ga0496108_0000047
225 Ga0496108_0180755
226 Ga0496109_0043148
227 Ga0496109_0251969
228 Ga0496110_0300317
229 Ga0496113_0043010
230 Ga0496114_0027070
231 Ga0496114_0288347
232 Ga0501067_0002788
233 Ga0501069_0070562
234 Ga0501257_015638
235 Ga0501229_000682
236 Ga0501268_014337
237 nmdc:mga05p37_446_c1
238 nmdc:mga09592_3167_c1
239 nmdc:mga06r32_115236_c1
240 nmdc:mga0n895_203502_c1
241 nmdc:mga08x19_5359_c1
242 nmdc:mga0a205_3025_c1

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21338

Top1B_N_bact

Bacterial DNA topoisomerase IB, N-terminal domain

118

166

0.99

PF01028

Topoisom_I

Eukaryotic DNA topoisomerase I, catalytic core

176

412

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2b9s-assembly1.cif.gz_A crystal structure of heterodimeric l. donovani topoisomerase i-vanadate-dna complex 0.7981 76 294
2h7g-assembly1.cif.gz_X structure of variola topoisomerase non-covalently bound to dna 0.764 27 330
1ej9-assembly1.cif.gz_A crystal structure of human topoisomerase i dna complex 0.764 76 330
1a35-assembly1.cif.gz_A human topoisomerase i/dna complex 0.7526 76 330
5zau-assembly1.cif.gz_B complex of the human fyn sh3 and monobody binder 0.7472 173 197
ID Description Score Start End Superfamily
3m4aA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.9256 128 243 3.90.15.10
3m4aA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.9035 128 243 3.90.15.10
af_A0A2R8S0L3_185_312_3.90.15.10 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.8923 98 202 3.90.15.10
2f4qA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.887 128 243 3.90.15.10
2f4qA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.8633 128 243 3.90.15.10
ID Description Score Start End GO Terms
AF-A0A401ZGZ0-F1-model_v4 DNA topoisomerase I catalytic core eukaryotic-type domain-containing protein 0.9904 246 317 GO:0003677
GO:0003917
GO:0006265
AF-A0A7W0YWZ9-F1-model_v4 DNA topoisomerase IB 0.9773 17 81 GO:0016853
AF-A0A2S9YM08-F1-model_v4 DNA topoisomerase IB N-terminal domain-containing protein 0.9748 8 104
AF-A0A3C0BSX0-F1-model_v4 Topoisomerase I 0.9727 16 94 GO:0016853
AF-A0A3D5MJ89-F1-model_v4 DNA topoisomerase (EC 5.6.2.1) 0.9718 104 330 GO:0003677
GO:0003917
GO:0006265

Map