F109454

General Info

Members Datasets Scaffolds Average Seq Length
121 102 242 399

Family's Representative Sequence

Representative Sequence 3300005577|Ga0068857_100033513|Ga0068857_1000335132
Length 459
Sequence MVGMSLPHSACYVACLLLAVVSARWLGLTAPNEPGTEQHRQATVSINTKEPALSDVPSRPLSGIRVVELGRLVAAPLAAQILGDLGADVVKVEHPRGDEYRRYGPSFLAEPDGEPSQLSSGFISNNRNKQSVAVDFSTAEGQDIIRQLAGRADVFIENFKVGGLRKYGLDEAALRARHPGLIYLSVTGYGQTGPYSSRPATDGAIQAMSGMQSLTGEPDGPPQRAGTLIVDVITGIYSALGIVAALRQRDSTEAGQHIDMSLLDCAMASLATSVAEYRLSGEAPIRHGNTQPGSVPARSFVCRDGHVQIQAAFDAHFVRLCACFGYPELAGDRRFATRAARVEHEAELSAILEPEFASRSVDEVFRLLAPADIICSPVNSVAAALADPQVIAREVEQDFALPDGRTVPNVASPLRMSGTSISYDRPAPTIGHHTSEVLASWLNTTPEQIAAWRRRGVVA

Samples

Sample ID Description Type Environment
1 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
4 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
16 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
17 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
18 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
19 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
20 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
21 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
24 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
26 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
27 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
28 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
29 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
32 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
39 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
40 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
41 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
42 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
43 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
44 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
45 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
46 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
47 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
48 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
49 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
50 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
51 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
52 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
53 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
54 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
55 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
56 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
57 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
58 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
59 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
60 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
61 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
62 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
63 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
64 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
65 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
66 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
67 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
68 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
69 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
70 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
74 3300049767 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A15_B_4_drought Metagenome Rhizosphere
75 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
77 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
78 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
79 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
80 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
81 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
82 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
83 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
84 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
85 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
86 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
87 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
88 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
89 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
90 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
91 2739367655 Pusillimonas sp. YR330 Isolate Unclassified
92 2751185800 Brucella pituitosa AA2 Isolate Unclassified
93 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
94 2854911287 Brucella lupini LUP21 Isolate Unclassified
95 2881412998 Achromobacter aloeverae AVA-1 Isolate Unclassified
96 2881927736 Candidimonas sp. SYP-B2681 Isolate Rhizosphere
97 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
98 2937972304 Mesorhizobium sp. M8A.F.Ca.ET.173.01.1.1 Isolate Nodule
99 2941479691
100 8002392321 Alcaligenes faecalis Mc250 Isolate Rhizosphere
101 8048746797 Alcaligenes endophyticus DSM 100498 Isolate Unclassified
102 8055431914 Allorhizobium sonneratiae BGMRC 0089 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 89.26
Metatranscriptomes 0
Isolates 10.74

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 24.79
Nodule 0.83
Rhizoplane 2.48
Rhizosphere 59.5
Stem 0
Stem Tuber 0
Unclassified 0.83

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068857_100033513 3300005577 Bacteria 4542
2 JGI25151J46595_10000254 3300003187 Bacteria 62429
3 Ga0055542_1000557 3300003762 Bacteria 32931
4 Ga0055529_1001556 3300003763 Bacteria 6471
5 Ga0055529_1001690 3300003763 Bacteria 5699
6 Ga0070658_10053872 3300005327 Bacteria 3266
7 Ga0070677_10017652 3300005333 Bacteria 2558
8 Ga0068868_100192896 3300005338 Bacteria 1695
9 Ga0070671_100011858 3300005355 Bacteria 7011
10 Ga0070705_100076751 3300005440 Bacteria 2038
11 Ga0070706_100102080 3300005467 Bacteria 2666
12 Ga0070706_100107877 3300005467 Bacteria 2590
13 Ga0070707_100128993 3300005468 Bacteria 2458
14 Ga0068855_100097527 3300005563 Bacteria 3386
15 Ga0068854_100021205 3300005578 Bacteria 4406
16 Ga0068854_100039730 3300005578 Bacteria 3316
17 Ga0068856_100182914 3300005614 Bacteria 2109
18 Ga0068852_100069365 3300005616 Bacteria 3089
19 Ga0075365_10020931 3300006038 Bacteria 4069
20 Ga0075368_10006897 3300006042 Bacteria 3993
21 Ga0075368_10074342 3300006042 Bacteria 1376
22 Ga0075364_10000143 3300006051 Bacteria 31207
23 Ga0075364_10013139 3300006051 Bacteria 5081
24 Ga0075432_10037387 3300006058 Bacteria 1690
25 Ga0075367_10004268 3300006178 Bacteria 6951
26 Ga0075367_10014837 3300006178 Bacteria 4221
27 Ga0075367_10036975 3300006178 Bacteria 2834
28 Ga0075430_100002695 3300006846 Bacteria 14826
29 Ga0075431_100131138 3300006847 Bacteria 2585
30 Ga0075431_100287009 3300006847 Bacteria 1665
31 Ga0105245_10006042 3300009098 Bacteria 10647
32 Ga0114129_10152080 3300009147 Bacteria 3166
33 Ga0105242_10125456 3300009176 Bacteria 2209
34 Ga0105248_10119367 3300009177 Bacteria 2974
35 Ga0157380_10010568 3300014326 Bacteria 6639
36 Ga0209563_104730 3300025230 Bacteria 2563
37 Ga0209148_1000126 3300025254 Bacteria 181590
38 Ga0209455_1000280 3300025272 Bacteria 55431
39 Ga0209455_1000566 3300025272 Bacteria 24635
40 Ga0209025_1000003 3300025294 Bacteria 1366495
41 Ga0207647_10028108 3300025904 Bacteria 3657
42 Ga0207667_10144002 3300025949 Bacteria 2454
43 Ga0207640_10069891 3300025981 Bacteria 2359
44 Ga0207639_10060998 3300026041 Bacteria 2911
45 Ga0207674_10102593 3300026116 Bacteria 2840
46 Ga0207698_10157955 3300026142 Bacteria 1979
47 Ga0209813_10002794 3300027866 Bacteria 4032
48 Ga0209974_10000666 3300027876 Bacteria 11642
49 Ga0265320_10002086 3300031240 Bacteria 14073
50 Ga0307408_100084004 3300031548 Bacteria 2387
51 Ga0307408_100091138 3300031548 Bacteria 2301
52 Ga0307413_10044846 3300031824 Bacteria 2616
53 Ga0307413_10145978 3300031824 Bacteria 1642
54 Ga0307407_10001400 3300031903 Bacteria 8698
55 Ga0307407_10011585 3300031903 Bacteria 4204
56 Ga0307412_10001167 3300031911 Bacteria 15025
57 Ga0307412_10018576 3300031911 Bacteria 4188
58 Ga0307409_100004062 3300031995 Bacteria 8135
59 Ga0307411_10042465 3300032005 Bacteria 2901
60 Ga0307415_100010255 3300032126 Bacteria 5297
61 Ga0307415_100010911 3300032126 Bacteria 5169
62 Ga0373929_0023148 3300035085 Bacteria 1274
63 Ga0400483_276724 3300039062 Bacteria 8274
64 Ga0436361_0480568 3300039447 Bacteria 5345
65 Ga0451577_0003980 3300042876 Bacteria 15930
66 Ga0453683_0007870 3300044673 Bacteria 7189
67 Ga0453684_0033733 3300044712 Bacteria 7126
68 Ga0453684_0207401 3300044712 Bacteria 2280
69 Ga0451576_0001241 3300045051 Bacteria 44894
70 Ga0451576_0015898 3300045051 Bacteria 8320
71 Ga0495580_0004523 3300046472 Bacteria 11677
72 Ga0495594_0136984 3300046499 Bacteria 1388
73 Ga0495610_0001615 3300046512 Bacteria 19815
74 Ga0495620_0054593 3300046515 Bacteria 1687
75 Ga0495643_0017178 3300046522 Bacteria 4235
76 Ga0495654_0025252 3300046530 Bacteria 3062
77 Ga0496102_0553790 3300048905 Bacteria 1073
78 Ga0496115_0291040 3300048918 Bacteria 1340
79 Ga0496116_0009703 3300048919 Bacteria 8179
80 Ga0496119_0030439 3300048922 Bacteria 3638
81 Ga0496120_0018760 3300048923 Bacteria 4446
82 Ga0496121_0000314 3300048924 Bacteria 100909
83 Ga0496122_0000046 3300048925 Bacteria 274640
84 Ga0496123_0084344 3300048926 Bacteria 1916
85 Ga0496125_0098322 3300048928 Bacteria 2165
86 Ga0501033_0064190 3300049570 Bacteria 2702
87 Ga0501034_0016087 3300049571 Bacteria 7676
88 Ga0501047_0029374 3300049581 Bacteria 5302
89 Ga0501235_021396 3300049669 Bacteria 1438
90 Ga0501270_001269 3300049767 Bacteria 2374
91 Ga0501035_0024305 3300049822 Bacteria 5557
92 Ga0501035_0143800 3300049822 Bacteria 2072
93 Ga0501044_0000022 3300049823 Bacteria 201689
94 Ga0501044_0008215 3300049823 Bacteria 11452
95 nmdc:mga03683_25596_c1 3300050489 Bacteria 2320
96 nmdc:mga00v17_126684_c1 3300050491 Bacteria 1630
97 nmdc:mga00v17_408_c1 3300050491 Bacteria 24376
98 nmdc:mga0yw44_67147_c1 3300050492 Bacteria 2216
99 nmdc:mga0k408_82168_c1 3300050493 Bacteria 1887
100 nmdc:mga06z11_8752_c1 3300050494 Bacteria 4239
101 nmdc:mga07m45_991_c1 3300050496 Bacteria 12531
102 nmdc:mga05p37_87783_c1 3300050507 Bacteria 3833
103 Ga0495619_0036655 3300053085 Unclassified 3194
104 Ga0500592_000060 3300053116 Bacteria 30689
105 Ga0500652_001161 3300053131 Bacteria 8403
106 Ga0500658_0022249 3300053134 Bacteria 2408
107 Ga0500627_0000112 3300053158 Bacteria 26712
108 Ga0500636_0016513 3300053177 Bacteria 4354
109 2561467792 2558860983 Bacteria 4133860
110 2739610178 2739367655 Bacteria 4051151
111 2753359418 2751185800 Bacteria 5467370
112 2758641678 2758568016 Bacteria 5645291
113 2854911957 2854911287 Bacteria 5582813
114 2881413980 2881412998 Bacteria 6492157
115 2881930628 2881927736 Bacteria 3993927
116 2915653879 2915650412 Bacteria 4288180
117 2937972683 2937972304 Bacteria 7532020
118 2941485180
119 8002392696 8002392321 Bacteria 4159911
120 8048747234 8048746797 Bacteria 3557226
121 8055434927 8055431914 Bacteria 4551896
122 Ga0068857_100033513
123 JGI25151J46595_10000254
124 Ga0055542_1000557
125 Ga0055529_1001556
126 Ga0055529_1001690
127 Ga0070658_10053872
128 Ga0070677_10017652
129 Ga0068868_100192896
130 Ga0070671_100011858
131 Ga0070705_100076751
132 Ga0070706_100102080
133 Ga0070706_100107877
134 Ga0070707_100128993
135 Ga0068855_100097527
136 Ga0068854_100021205
137 Ga0068854_100039730
138 Ga0068856_100182914
139 Ga0068852_100069365
140 Ga0075365_10020931
141 Ga0075368_10006897
142 Ga0075368_10074342
143 Ga0075364_10000143
144 Ga0075364_10013139
145 Ga0075432_10037387
146 Ga0075367_10004268
147 Ga0075367_10014837
148 Ga0075367_10036975
149 Ga0075430_100002695
150 Ga0075431_100131138
151 Ga0075431_100287009
152 Ga0105245_10006042
153 Ga0114129_10152080
154 Ga0105242_10125456
155 Ga0105248_10119367
156 Ga0157380_10010568
157 Ga0209563_104730
158 Ga0209148_1000126
159 Ga0209455_1000280
160 Ga0209455_1000566
161 Ga0209025_1000003
162 Ga0207647_10028108
163 Ga0207667_10144002
164 Ga0207640_10069891
165 Ga0207639_10060998
166 Ga0207674_10102593
167 Ga0207698_10157955
168 Ga0209813_10002794
169 Ga0209974_10000666
170 Ga0265320_10002086
171 Ga0307408_100084004
172 Ga0307408_100091138
173 Ga0307413_10044846
174 Ga0307413_10145978
175 Ga0307407_10001400
176 Ga0307407_10011585
177 Ga0307412_10001167
178 Ga0307412_10018576
179 Ga0307409_100004062
180 Ga0307411_10042465
181 Ga0307415_100010255
182 Ga0307415_100010911
183 Ga0373929_0023148
184 Ga0400483_276724
185 Ga0436361_0480568
186 Ga0451577_0003980
187 Ga0453683_0007870
188 Ga0453684_0033733
189 Ga0453684_0207401
190 Ga0451576_0001241
191 Ga0451576_0015898
192 Ga0495580_0004523
193 Ga0495594_0136984
194 Ga0495610_0001615
195 Ga0495620_0054593
196 Ga0495643_0017178
197 Ga0495654_0025252
198 Ga0496102_0553790
199 Ga0496115_0291040
200 Ga0496116_0009703
201 Ga0496119_0030439
202 Ga0496120_0018760
203 Ga0496121_0000314
204 Ga0496122_0000046
205 Ga0496123_0084344
206 Ga0496125_0098322
207 Ga0501033_0064190
208 Ga0501034_0016087
209 Ga0501047_0029374
210 Ga0501235_021396
211 Ga0501270_001269
212 Ga0501035_0024305
213 Ga0501035_0143800
214 Ga0501044_0000022
215 Ga0501044_0008215
216 nmdc:mga03683_25596_c1
217 nmdc:mga00v17_126684_c1
218 nmdc:mga00v17_408_c1
219 nmdc:mga0yw44_67147_c1
220 nmdc:mga0k408_82168_c1
221 nmdc:mga06z11_8752_c1
222 nmdc:mga07m45_991_c1
223 nmdc:mga05p37_87783_c1
224 Ga0495619_0036655
225 Ga0500592_000060
226 Ga0500652_001161
227 Ga0500658_0022249
228 Ga0500627_0000112
229 Ga0500636_0016513
230 2561467792
231 2739610178
232 2753359418
233 2758641678
234 2854911957
235 2881413980
236 2881930628
237 2915653879
238 2937972683
239 2941485180
240 8002392696
241 8048747234
242 8055434927

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02515

CoA_transf_3

CoA-transferase family III

61

434

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
5yit-assembly1.cif.gz_B crystal structure of hypothetical protein (rv3272) from mycobacterium tuberculosis 0.9537 23 407
5yit-assembly2.cif.gz_D crystal structure of hypothetical protein (rv3272) from mycobacterium tuberculosis 0.9526 23 405
5yiy-assembly1.cif.gz_B crystal structure of d175a mutant of rv3272 from mycobacterium tuberculosis 0.949 22 404
4hl6-assembly2.cif.gz_C yfde from escherichia coli 0.9486 23 406
5yx6-assembly1.cif.gz_B crystal structure of rv3272 from m. tuberculosis orthorhombic form 0.9469 23 407
ID Description Score Start End Superfamily
af_Q4V9F2_1_227_3.40.50.10540 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.9876 45 267 3.40.50.10540
af_Q9VDL4_46_327_3.40.50.10540 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.9812 24 314 3.40.50.10540
af_Q68FU4_261_348_3.30.1540.10 Alpha Beta;2-Layer Sandwich;formyl-coa transferase, domain 3;formyl-coa transferase, domain 3 0.9717 259 345 3.30.1540.10
af_Q9VDL4_46_327_3.40.50.10540 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.9709 24 314 3.40.50.10540
4ed9A02 Alpha Beta;2-Layer Sandwich;formyl-coa transferase, domain 3;formyl-coa transferase, domain 3 0.9675 257 348 3.30.1540.10
ID Description Score Start End GO Terms
AF-A0A516SD98-F1-model_v4 CoA transferase 0.9923 23 406 GO:0008410
AF-A0A7R6PCK0-F1-model_v4 CoA transferase 0.9913 23 406 GO:0008410
AF-A0A4Q3NI35-F1-model_v4 deleted 0.9911 23 106
AF-A0A538ATG5-F1-model_v4 CoA transferase 0.9895 23 406 GO:0008410
AF-A0A270AFS0-F1-model_v4 deleted 0.9867 23 406

Map