F108084

General Info

Members Datasets Scaffolds Average Seq Length
120 92 90 408

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2829745981|2829748767
Length 472
Sequence PVNADDTARSAAKGASLPDHALTDHALMGGDGGVDNAPGIDACNMRAGAGRPAAGRGAGPRTDYEAHFRGALERLHSERRYRVFADIERISGRFPQATWRRPEGGTREITVWCSNDYLGMGQHPEVVEAMTRTAARCGVGAGGTRNIAGNNSPLVDLERELADLHGKEAGLVFTSGYVSNQSGIATIAKLIPDCLILSDAFNHNSMIEGVRHSGCEKRVFRHNDLDHLEELLVAAGDRPKLICFESVYSMDGDVAPIAAICDLADTYGAMTYLDEVHAVGLYGERGAGIAERDGVMHRVDVIEGTLAKGYGCVGGYITGTATLCDAVRSHAAGFIFTTALPPAIAAAARASVRYLKRSGTERAAHQHQAAQTKAALAAAGLPVLATETHIVPLMVGDAELCKAAADHLLEHHDIYIQPINYPTVPRGTERLRITPSPFHDEARIAALTAALVETWDTLDLPRAGTVFAAAAE

Samples

Sample ID Description Type Environment
1 2513237098 Bradyrhizobium elkanii WSM2783 Isolate Nodule
2 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
3 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
4 2595698237 Methylobacterium sp. UNCCL125 Isolate Unclassified
5 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
6 2738543024 Aminobacter sp. AP02 Isolate Unclassified
7 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
8 2818991440 Luteibacter yeojuensis 583 Isolate Unclassified
9 2829745981 Methylorubrum rhodinum DSM 2163 Isolate Rhizosphere
10 2842698319 Methylobacterium sp. R-72139 Isolate Unclassified
11 2861691609 Methylorubrum thiocyanatum DSM 11490 Isolate Rhizosphere
12 2879163058 Sphingomonas pokkalii L3B27 Isolate Rhizosphere
13 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
14 2902330777 Methylobacterium sp. 2A Isolate Unclassified
15 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
16 2903768456 Bradyrhizobium sp. Leo121 Isolate Unclassified
17 2904463128 Luteibacter yeojuensis 3191 Isolate Unclassified
18 2919450847 Ancylobacter sp. 3268 Isolate Rhizosphere
19 2928125067 Methylobacterium sp. 1973 Isolate Unclassified
20 2932801729 Bradyrhizobium sp. S3.3.6 Isolate Nodule
21 2935638405 Bradyrhizobium sp. JR19.8 Isolate Nodule
22 2935665750 Bradyrhizobium sp. JR7.2 Isolate Nodule
23 2935827899 Bradyrhizobium sp. RT4a Isolate Nodule
24 2995392953 Martelella limonii NBRC 109441 Isolate Unclassified
25 3300001991 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 Metagenome Rhizosphere
26 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
27 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
28 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
29 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
30 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
31 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
32 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
33 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
34 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
35 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
36 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
39 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
40 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
42 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
50 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
51 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
52 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
53 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
54 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
55 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
56 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
57 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
58 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
59 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
60 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
61 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
62 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
63 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
64 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
65 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
66 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
67 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
68 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
69 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
70 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
71 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
72 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
73 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
74 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
75 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
79 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
80 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
81 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
82 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
83 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
84 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
85 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
86 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
87 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
88 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
89 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
90 641522639 Methylobacterium sp. 4-46 Isolate Nodule
91 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
92 8001845381 Ancylobacter sonchi VKM B-3145 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 75
Metatranscriptomes 0
Isolates 25

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.33
Nodule 9.17
Rhizoplane 0
Rhizosphere 66.67
Stem 0
Stem Tuber 0
Unclassified 15.83

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24743J22301_10011879 3300001991 Bacteria 1577
2 Ga0055524_1012477 3300003775 Bacteria 3260
3 Ga0055528_1000367 3300003790 Bacteria 36676
4 Ga0070658_10106204 3300005327 Bacteria 2323
5 Ga0070662_100007085 3300005457 Bacteria 7256
6 Ga0070679_100204289 3300005530 Bacteria 1940
7 Ga0068863_100038789 3300005841 Bacteria 4532
8 Ga0068862_100259647 3300005844 Bacteria 1586
9 Ga0075363_100093249 3300006048 Bacteria 1659
10 Ga0075364_10126151 3300006051 Bacteria 1716
11 Ga0075430_100012149 3300006846 Bacteria 7330
12 Ga0099794_10016810 3300007265 Bacteria 3250
13 Ga0105248_10010330 3300009177 Bacteria 10275
14 Ga0105248_10511188 3300009177 Bacteria 1354
15 Ga0213872_10000759 3300021361 Bacteria 23719
16 Ga0213872_10001429 3300021361 Bacteria 15596
17 Ga0213872_10005541 3300021361 Bacteria 6469
18 Ga0213872_10025593 3300021361 Bacteria 2712
19 Ga0213872_10053093 3300021361 Bacteria 1838
20 Ga0209673_1000005 3300025273 Bacteria 692788
21 Ga0209676_1018724 3300025292 Bacteria 2407
22 Ga0209564_1023075 3300025295 Bacteria 2175
23 Ga0209256_1000477 3300025299 Bacteria 59886
24 Ga0207644_10095351 3300025931 Bacteria 2225
25 Ga0207711_10007279 3300025941 Bacteria 9272
26 Ga0207641_10041043 3300026088 Bacteria 3877
27 Ga0207676_10037770 3300026095 Bacteria 3682
28 Ga0209974_10013394 3300027876 Bacteria 2732
29 Ga0268264_10038584 3300028381 Bacteria 3942
30 Ga0265324_10002080 3300029957 Bacteria 10604
31 Ga0265328_10004191 3300031239 Bacteria 6287
32 Ga0265320_10036610 3300031240 Bacteria 2478
33 Ga0265331_10000162 3300031250 Bacteria 84055
34 Ga0265327_10000665 3300031251 Bacteria 55138
35 Ga0265313_10000118 3300031595 Bacteria 79605
36 Ga0265314_10018345 3300031711 Bacteria 5457
37 Ga0265314_10044973 3300031711 Bacteria 3124
38 Ga0307410_10026878 3300031852 Bacteria 3629
39 Ga0307412_10000588 3300031911 Bacteria 21547
40 Ga0307412_10005733 3300031911 Bacteria 6980
41 Ga0307411_10125539 3300032005 Bacteria 1865
42 Ga0373947_0033590 3300035725 Bacteria 3030
43 Ga0395899_0047850 3300037312 Bacteria 3183
44 Ga0395900_0016627 3300037418 Bacteria 7504
45 Ga0395900_0167213 3300037418 Bacteria 2241
46 Ga0395905_0034899 3300037471 Bacteria 4722
47 Ga0395905_0098825 3300037471 Bacteria 2741
48 Ga0395901_0084609 3300038443 Bacteria 3315
49 Ga0436365_0122301 3300039437 Bacteria 13111
50 Ga0436361_0071737 3300039447 Bacteria 34284
51 Ga0436361_0279054 3300039447 Bacteria 24454
52 Ga0436361_0340956 3300039447 Bacteria 5060
53 Ga0436361_0429643 3300039447 Bacteria 1617
54 Ga0436361_0671065 3300039447 Bacteria 4316
55 Ga0436361_0691126 3300039447 Bacteria 4596
56 Ga0436361_0691819 3300039447 Bacteria 3209
57 Ga0436361_0760725 3300039447 Bacteria 19055
58 Ga0453683_0008519 3300044673 Bacteria 6877
59 Ga0466966_0098448 3300044684 Bacteria 1811
60 Ga0453684_0021200 3300044712 Bacteria 9727
61 Ga0453684_0063248 3300044712 Bacteria 4735
62 Ga0466968_0008229 3300044735 Bacteria 3988
63 Ga0466968_0009125 3300044735 Bacteria 3812
64 Ga0466959_0046499 3300045049 Bacteria 3193
65 Ga0451576_0000752 3300045051 Bacteria 64762
66 Ga0451576_0065419 3300045051 Bacteria 3786
67 Ga0466958_0001519 3300045836 Bacteria 11116
68 Ga0496123_0014850 3300048926 Bacteria 6427
69 Ga0496124_0000293 3300048927 Bacteria 93590
70 Ga0496124_0000674 3300048927 Bacteria 56134
71 Ga0501036_0002553 3300049572 Bacteria 14318
72 Ga0501040_0026429 3300049576 Bacteria 3904
73 Ga0501040_0143927 3300049576 Bacteria 1680
74 Ga0501041_0033678 3300049577 Bacteria 3100
75 Ga0501072_0000620 3300049588 Bacteria 25510
76 Ga0501072_0077140 3300049588 Bacteria 2638
77 Ga0501075_0000014 3300049591 Bacteria 77078
78 Ga0501076_0000344 3300049592 Bacteria 28618
79 Ga0501077_0019888 3300049593 Bacteria 4248
80 Ga0501077_0045553 3300049593 Bacteria 2787
81 Ga0501080_0057071 3300049742 Bacteria 3636
82 Ga0501083_0183974 3300049744 Bacteria 1364
83 Ga0501045_0111597 3300049824 Bacteria 2027
84 nmdc:mga0rr50_406635_c1 3300050513 Bacteria 1150
85 Ga0500562_000133 3300053108 Bacteria 22532
86 Ga0500616_0020907 3300053153 Bacteria 3674
87 Ga0501084_0015495 3300054114 Bacteria 6322
88 Ga0501084_0029246 3300054114 Bacteria 4609
89 Ga0501082_0001766 3300060353 Bacteria 19027
90 Ga0501082_0008406 3300060353 Bacteria 8905

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050513 nmdc:mga0rr50_406635_c1 nmdc:mga0rr50_406635_c1_41_1102 336
2 3300039447 Ga0436361_0671065 Ga0436361_0671065_1637_2863 366
3 3300009177 Ga0105248_10511188 Ga0105248_105111882 376
4 iso_pu_bacteria 2902405164 2902411788 376
5 3300037418 Ga0395900_0167213 Ga0395900_0167213_628_1845 379
6 3300044712 Ga0453684_0021200 Ga0453684_0021200_3078_4307 384
7 3300005844 Ga0068862_100259647 Ga0068862_1002596472 389
8 3300027876 Ga0209974_10013394 Ga0209974_100133942 389
9 3300037471 Ga0395905_0034899 Ga0395905_0034899_2174_3385 389
10 3300038443 Ga0395901_0084609 Ga0395901_0084609_1493_2704 389
11 3300005841 Ga0068863_100038789 Ga0068863_1000387895 390
12 3300009177 Ga0105248_10010330 Ga0105248_1001033010 390
13 3300025931 Ga0207644_10095351 Ga0207644_100953511 390
14 3300025941 Ga0207711_10007279 Ga0207711_100072796 390
15 3300026088 Ga0207641_10041043 Ga0207641_100410435 390
16 3300028381 Ga0268264_10038584 Ga0268264_100385842 390
17 3300031852 Ga0307410_10026878 Ga0307410_100268783 390
18 3300037418 Ga0395900_0016627 Ga0395900_0016627_3295_4506 390
19 3300044735 Ga0466968_0008229 Ga0466968_0008229_1947_3158 390
20 3300045049 Ga0466959_0046499 Ga0466959_0046499_1753_2964 390
21 3300021361 Ga0213872_10005541 Ga0213872_100055412 391
22 3300032005 Ga0307411_10125539 Ga0307411_101255391 391
23 3300037312 Ga0395899_0047850 Ga0395899_0047850_507_1718 391
24 3300039447 Ga0436361_0691126 Ga0436361_0691126_3352_4563 391
25 3300044673 Ga0453683_0008519 Ga0453683_0008519_5563_6798 391
26 iso_pu_bacteria 2919450847 2919453181 392
27 iso_pu_bacteria 8001845381 8001850442 392
28 iso_pu_bacteria 2524023250 2524611852 393
29 iso_pu_bacteria 2818991440 2819563144 393
30 iso_pu_bacteria 2879163058 2879164123 393
31 iso_pu_bacteria 2904463128 2904463760 393
32 iso_pu_bacteria 2935638405 2935647792 393
33 iso_pu_bacteria 2935665750 2935666833 393
34 iso_pu_bacteria 2935827899 2935837276 393
35 iso_pu_bacteria 2738543024 2739306890 394
36 iso_pu_bacteria 2995392953 2995396766 394
37 iso_pu_bacteria 2545555834 2545676812 395
38 iso_pu_bacteria 641522639 641642857 395
39 iso_pu_bacteria 643348564 643602572 395
40 3300021361 Ga0213872_10000759 Ga0213872_100007596 396
41 3300021361 Ga0213872_10001429 Ga0213872_100014295 396
42 3300021361 Ga0213872_10025593 Ga0213872_100255932 396
43 3300021361 Ga0213872_10053093 Ga0213872_100530932 396
44 3300029957 Ga0265324_10002080 Ga0265324_100020807 396
45 3300031239 Ga0265328_10004191 Ga0265328_100041915 396
46 3300031240 Ga0265320_10036610 Ga0265320_100366101 396
47 3300031250 Ga0265331_10000162 Ga0265331_1000016241 396
48 3300031251 Ga0265327_10000665 Ga0265327_1000066523 396
49 3300031595 Ga0265313_10000118 Ga0265313_1000011834 396
50 3300031711 Ga0265314_10018345 Ga0265314_100183456 396
51 3300031711 Ga0265314_10044973 Ga0265314_100449731 396
52 3300035725 Ga0373947_0033590 Ga0373947_0033590_1787_3013 396
53 3300039447 Ga0436361_0071737 Ga0436361_0071737_16877_18088 396
54 3300039447 Ga0436361_0340956 Ga0436361_0340956_3184_4395 396
55 3300039447 Ga0436361_0429643 Ga0436361_0429643_39_1250 396
56 3300039447 Ga0436361_0691819 Ga0436361_0691819_110_1321 396
57 3300044684 Ga0466966_0098448 Ga0466966_0098448_194_1420 396
58 3300044712 Ga0453684_0063248 Ga0453684_0063248_1578_2816 396
59 3300045051 Ga0451576_0000752 Ga0451576_0000752_17675_18910 396
60 3300045051 Ga0451576_0065419 Ga0451576_0065419_439_1674 396
61 3300045836 Ga0466958_0001519 Ga0466958_0001519_4707_5918 396
62 3300049576 Ga0501040_0143927 Ga0501040_0143927_238_1467 396
63 3300049588 Ga0501072_0077140 Ga0501072_0077140_540_1769 396
64 3300049593 Ga0501077_0045553 Ga0501077_0045553_1387_2616 396
65 3300054114 Ga0501084_0029246 Ga0501084_0029246_1488_2717 396
66 3300060353 Ga0501082_0008406 Ga0501082_0008406_1867_3096 396
67 3300003775 Ga0055524_1012477 Ga0055524_10124771 397
68 3300003790 Ga0055528_1000367 Ga0055528_100036732 397
69 3300005530 Ga0070679_100204289 Ga0070679_1002042892 397
70 3300006051 Ga0075364_10126151 Ga0075364_101261512 397
71 3300006846 Ga0075430_100012149 Ga0075430_1000121494 397
72 3300025273 Ga0209673_1000005 Ga0209673_1000005575 397
73 3300025292 Ga0209676_1018724 Ga0209676_10187242 397
74 3300025295 Ga0209564_1023075 Ga0209564_10230751 397
75 3300025299 Ga0209256_1000477 Ga0209256_100047739 397
76 3300026095 Ga0207676_10037770 Ga0207676_100377703 397
77 3300031911 Ga0307412_10000588 Ga0307412_1000058811 397
78 3300031911 Ga0307412_10005733 Ga0307412_100057336 397
79 3300037471 Ga0395905_0098825 Ga0395905_0098825_199_1410 397
80 3300048926 Ga0496123_0014850 Ga0496123_0014850_590_1819 397
81 3300048927 Ga0496124_0000293 Ga0496124_0000293_30084_31313 397
82 3300048927 Ga0496124_0000674 Ga0496124_0000674_37090_38319 397
83 3300049572 Ga0501036_0002553 Ga0501036_0002553_1107_2318 397
84 3300049576 Ga0501040_0026429 Ga0501040_0026429_752_1963 397
85 3300049577 Ga0501041_0033678 Ga0501041_0033678_983_2194 397
86 3300049588 Ga0501072_0000620 Ga0501072_0000620_20332_21543 397
87 3300049591 Ga0501075_0000014 Ga0501075_0000014_68527_69738 397
88 3300049592 Ga0501076_0000344 Ga0501076_0000344_27036_28247 397
89 3300049593 Ga0501077_0019888 Ga0501077_0019888_1314_2525 397
90 3300049742 Ga0501080_0057071 Ga0501080_0057071_337_1548 397
91 3300049744 Ga0501083_0183974 Ga0501083_0183974_11_1222 397
92 3300049824 Ga0501045_0111597 Ga0501045_0111597_125_1336 397
93 3300053153 Ga0500616_0020907 Ga0500616_0020907_1866_3092 397
94 3300054114 Ga0501084_0015495 Ga0501084_0015495_4472_5683 397
95 3300060353 Ga0501082_0001766 Ga0501082_0001766_5080_6291 397
96 3300053108 Ga0500562_000133 Ga0500562_000133_11073_12290 398
97 3300007265 Ga0099794_10016810 Ga0099794_100168102 404
98 iso_pu_bacteria 2932801729 2932801745 404
99 iso_pu_bacteria 2738541281 2738744946 405
100 iso_pu_bacteria 2738543032 2739354176 405
101 iso_pu_bacteria 2842698319 2842699700 405
102 3300006048 Ga0075363_100093249 Ga0075363_1000932492 406
103 iso_pu_bacteria 2882456835 2882463481 406
104 iso_pu_bacteria 2513237098 2513674339 407
105 iso_pu_bacteria 2903768456 2903770022 407
106 3300039447 Ga0436361_0279054 Ga0436361_0279054_15289_16551 411
107 3300039447 Ga0436361_0760725 Ga0436361_0760725_792_2048 411
108 iso_pu_bacteria 2595698237 2596377253 411
109 iso_pu_bacteria 2902330777 2902335124 411
110 iso_pu_bacteria 2928125067 2928127707 411
111 3300005327 Ga0070658_10106204 Ga0070658_101062042 413
112 iso_pu_bacteria 2545555834 2545674690 413
113 iso_pu_bacteria 641522639 641643610 413
114 iso_pu_bacteria 643348564 643599847 413
115 3300044735 Ga0466968_0009125 Ga0466968_0009125_1770_3065 415
116 iso_pu_bacteria 2861691609 2861691968 415
117 iso_pu_bacteria 2829745981 2829748767 416
118 3300039437 Ga0436365_0122301 Ga0436365_0122301_921_2375 420
119 3300005457 Ga0070662_100007085 Ga0070662_1000070858 422
120 3300001991 JGI24743J22301_10011879 JGI24743J22301_100118792 423

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00155

Aminotran_1_2

Aminotransferase class I and II

107

451

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
2bwo-assembly2.cif.gz_D 5-aminolevulinate synthase from rhodobacter capsulatus in complex with succinyl-coa 0.9614 27 410
7x98-assembly2.cif.gz_D 5-aminolevulinate synthase hema from rhodopseudomonas palustris 0.9606 27 416
5txt-assembly3.cif.gz_E structure of asymmetric apo/holo alas dimer from s. cerevisiae 0.9484 73 421
5txt-assembly2.cif.gz_D structure of asymmetric apo/holo alas dimer from s. cerevisiae 0.9484 73 421
5txr-assembly1.cif.gz_A structure of alas from s. cerevisiae non-covalently bound to plp cofactor 0.9398 28 421
ID Description Score Start End Superfamily
af_P09950_130_384_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9789 88 319 3.40.640.10
af_Q8I4X1_277_513_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9747 91 321 3.40.640.10
af_I1JW06_395_456_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9703 347 408 3.90.1150.10
3a2bA02 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9624 90 323 3.40.640.10
af_P0AB77_58_296_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9568 87 324 3.40.640.10
ID Description Score Start End GO Terms
AF-A0A537RIS6-F1-model_v4 Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.9984 113 226 GO:0008483
GO:0009058
GO:0030170
AF-A0A442GUE8-F1-model_v4 Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.9979 126 258 GO:0008483
GO:0009058
GO:0030170
AF-A0A0P0HP44-F1-model_v4 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.9923 91 236 GO:0003870
GO:0006783
GO:0030170
AF-F6RYA6-F1-model_v4 Aminolevulinic acid synthase 1 0.9919 188 276 GO:0009058
GO:0016746
GO:0030170
AF-A0A521PR97-F1-model_v4 Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.984 343 423 GO:0003870
GO:0006783
GO:0008483
GO:0030170

Feature Viewer

pLDDT pTM Quality
87.04 0.86 High
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Predicted Structure (AlphaFold2)

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