F074894

General Info

Members Datasets Scaffolds Average Seq Length
113 43 226 313

Family's Representative Sequence

Representative Sequence 3300036712|Ga0316584_0212806|Ga0316584_0212806_133_1230
Length 365
Sequence MHRLQQQKGDQAHVTLRVYQQGSRRSDRIIVCWLLLQRMHRRQLCRVRPLMKSSIKIGTRASKLALWQAEWVKSALMDKSPGRPVELVTIKTKGDKILDVPLAKVGGKGLFVKEIEQALLDHRIDIAVHSMKDMPAEIPQGLSIAAVPQREAADDVLISKSGQEFAELRRGAVIGTSSLRRAAQLRHARPDIEIVPLRGNLDTRLKKLQSDDLDAIVLAAAGIIRLRLEHRITQYLTADIMLPAVGQGALCIETRQSDPDIEPLTSALDHPDSRTAVAGERAFLNRLGGSCQVPIAGNGEIKDGRFHLWGLVADLDGSQLIKSKLTGDAVAAESIGIDLAEQLLSRGAGRILEKLQTLETENGQS

Samples

Sample ID Description Type Environment
1 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
2 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
3 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
4 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
5 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
6 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
7 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
8 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
9 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
10 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
11 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
12 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
13 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
14 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
15 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
16 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
17 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
18 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
19 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
20 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
21 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
22 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
23 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
24 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
25 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
26 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
27 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
28 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
29 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
30 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
31 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
32 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
33 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
34 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
35 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
36 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
37 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
38 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
39 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
40 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
41 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
42 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
43 2740891818 Desulfofaba hansenii DSM 12642 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 86.73
Metatranscriptomes 12.39
Isolates 0.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 69.03
Stem 0
Stem Tuber 0
Unclassified 3.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316584_0212806 3300036712 Bacteria 1422
2 Ga0070711_100000039 3300005439 Bacteria 85604
3 Ga0070708_100005237 3300005445 Bacteria 10268
4 Ga0070699_100012601 3300005518 Bacteria 7291
5 Ga0068863_100590723 3300005841 Bacteria 1098
6 Ga0157376_10042549 3300014969 Bacteria 3723
7 Ga0157376_10163291 3300014969 Bacteria 2021
8 Ga0207646_10147608 3300025922 Bacteria 2119
9 Ga0207664_10210520 3300025929 Bacteria 1682
10 Ga0207641_10019149 3300026088 Bacteria 5615
11 Ga0316575_10001515 3300031665 Bacteria 7513
12 Ga0316575_10005971 3300031665 Unclassified 4358
13 Ga0316579_10016798 3300031691 Bacteria 3202
14 Ga0316579_10018053 3300031691 Bacteria 3100
15 Ga0316579_10063578 3300031691 Bacteria 1740
16 Ga0316579_10067999 3300031691 Bacteria 1684
17 Ga0316579_10104160 3300031691 Bacteria 1360
18 Ga0316576_10000853 3300031727 Bacteria 15473
19 Ga0316576_10051830 3300031727 Bacteria 2987
20 Ga0316576_10114831 3300031727 Bacteria 2020
21 Ga0316576_10234879 3300031727 Bacteria 1378
22 Ga0316578_10000270 3300031728 Bacteria 15583
23 Ga0316578_10006167 3300031728 Bacteria 5890
24 Ga0316578_10015894 3300031728 Bacteria 4061
25 Ga0316577_10000005 3300031733 Bacteria 43786
26 Ga0316577_10003155 3300031733 Bacteria 8286
27 Ga0316577_10007778 3300031733 Bacteria 5724
28 Ga0316577_10011204 3300031733 Bacteria 4856
29 Ga0316577_10012400 3300031733 Unclassified 4643
30 Ga0316577_10119027 3300031733 Bacteria 1484
31 Ga0307412_10193237 3300031911 Bacteria 1540
32 Ga0316583_10001182 3300032133 Bacteria 8557
33 Ga0316583_10019028 3300032133 Bacteria 2466
34 Ga0316583_10021041 3300032133 Bacteria 2339
35 Ga0316583_10031304 3300032133 Bacteria 1894
36 Ga0316585_10013494 3300032137 Unclassified 2433
37 Ga0316585_10015424 3300032137 Unclassified 2292
38 Ga0316580_10004180 3300032139 Bacteria 4165
39 Ga0316593_10003753 3300032168 Bacteria 3815
40 Ga0316593_10005993 3300032168 Bacteria 3252
41 Ga0316593_10007839 3300032168 Bacteria 2950
42 Ga0316593_10010715 3300032168 Bacteria 2641
43 Ga0316593_10013943 3300032168 Bacteria 2388
44 Ga0316593_10021468 3300032168 Bacteria 2019
45 Ga0316593_10022211 3300032168 Bacteria 1992
46 Ga0316593_10025075 3300032168 Bacteria 1895
47 Ga0316593_10033409 3300032168 Bacteria 1684
48 Ga0316593_10046046 3300032168 Bacteria 1463
49 Ga0316593_10060053 3300032168 Bacteria 1299
50 Ga0316596_1028683 3300033541 Bacteria 1439
51 Ga0316596_1030660 3300033541 Bacteria 1395
52 Ga0316596_1033014 3300033541 Bacteria 1348
53 Ga0373954_0219184 3300035118 Bacteria 936
54 Ga0316574_0002835 3300035398 Bacteria 8790
55 Ga0316574_0051690 3300035398 Bacteria 2562
56 Ga0316574_0074376 3300035398 Bacteria 2150
57 Ga0373937_0033482 3300036401 Bacteria 4667
58 Ga0316582_0011160 3300036647 Bacteria 4959
59 Ga0316582_0021135 3300036647 Bacteria 3838
60 Ga0316582_0031669 3300036647 Bacteria 3235
61 Ga0316582_0107307 3300036647 Bacteria 1855
62 Ga0316584_0000098 3300036712 Bacteria 35527
63 Ga0316584_0003186 3300036712 Bacteria 10615
64 Ga0316584_0003410 3300036712 Bacteria 10312
65 Ga0316584_0069613 3300036712 Bacteria 2638
66 Ga0316584_0071152 3300036712 Bacteria 2607
67 Ga0316584_0093991 3300036712 Bacteria 2245
68 Ga0316584_0186672 3300036712 Bacteria 1534
69 Ga0316584_0366037 3300036712 Bacteria 1033
70 Ga0395901_0038872 3300038443 Bacteria 4922
71 Ga0400484_25872 3300038725 Bacteria 1813
72 Ga0400484_41507 3300038725 Bacteria 7573
73 Ga0400490_04568 3300038726 Bacteria 3206
74 Ga0400490_22338 3300038726 Bacteria 1754
75 Ga0400490_34299 3300038726 Bacteria 2568
76 Ga0400490_55129 3300038726 Bacteria 10975
77 Ga0400491_23672 3300038727 Bacteria 2739
78 Ga0400485_00189 3300038735 Bacteria 9550
79 Ga0400485_14168 3300038735 Bacteria 5631
80 Ga0400485_19305 3300038735 Bacteria 30675
81 Ga0400488_10462 3300038741 Bacteria 2496
82 Ga0400488_21287 3300038741 Bacteria 8498
83 Ga0400488_45894 3300038741 Bacteria 7238
84 Ga0400488_49312 3300038741 Bacteria 2000
85 Ga0400486_06117 3300038742 Bacteria 12140
86 Ga0400486_08357 3300038742 Bacteria 47260
87 Ga0400486_16585 3300038742 Bacteria 12900
88 Ga0400486_32414 3300038742 Bacteria 97031
89 Ga0400483_005644 3300039062 Bacteria 9556
90 Ga0400483_006434 3300039062 Bacteria 7808
91 Ga0400483_046133 3300039062 Bacteria 6361
92 Ga0400483_081982 3300039062 Bacteria 15849
93 Ga0400483_199830 3300039062 Bacteria 9403
94 Ga0400483_218914 3300039062 Bacteria 2218
95 Ga0400483_271713 3300039062 Bacteria 13826
96 Ga0400483_275196 3300039062 Bacteria 3192
97 Ga0400489_14426 3300039093 Bacteria 69687
98 Ga0400489_61704 3300039093 Bacteria 41366
99 Ga0400489_70391 3300039093 Bacteria 2776
100 Ga0400489_81741 3300039093 Bacteria 61469
101 Ga0400487_42389 3300039110 Bacteria 30104
102 Ga0400487_43867 3300039110 Bacteria 6390
103 Ga0400487_49586 3300039110 Bacteria 2068
104 Ga0400487_63817 3300039110 Bacteria 1823
105 Ga0453684_0002307 3300044712 Bacteria 46891
106 Ga0495629_0063723 3300046459 Bacteria 2574
107 Ga0495632_0003206 3300046519 Bacteria 11769
108 Ga0495599_0139908 3300046678 Bacteria 1502
109 Ga0495658_0113886 3300046683 Bacteria 1629
110 Ga0495604_0153262 3300047317 Bacteria 1635
111 Ga0495680_0306044 3300047322 Bacteria 1115
112 Ga0495601_0062913 3300053077 Bacteria 2358
113 2740990483 2740891818 Bacteria 6711283
114 Ga0316584_0212806
115 Ga0070711_100000039
116 Ga0070708_100005237
117 Ga0070699_100012601
118 Ga0068863_100590723
119 Ga0157376_10042549
120 Ga0157376_10163291
121 Ga0207646_10147608
122 Ga0207664_10210520
123 Ga0207641_10019149
124 Ga0316575_10001515
125 Ga0316575_10005971
126 Ga0316579_10016798
127 Ga0316579_10018053
128 Ga0316579_10063578
129 Ga0316579_10067999
130 Ga0316579_10104160
131 Ga0316576_10000853
132 Ga0316576_10051830
133 Ga0316576_10114831
134 Ga0316576_10234879
135 Ga0316578_10000270
136 Ga0316578_10006167
137 Ga0316578_10015894
138 Ga0316577_10000005
139 Ga0316577_10003155
140 Ga0316577_10007778
141 Ga0316577_10011204
142 Ga0316577_10012400
143 Ga0316577_10119027
144 Ga0307412_10193237
145 Ga0316583_10001182
146 Ga0316583_10019028
147 Ga0316583_10021041
148 Ga0316583_10031304
149 Ga0316585_10013494
150 Ga0316585_10015424
151 Ga0316580_10004180
152 Ga0316593_10003753
153 Ga0316593_10005993
154 Ga0316593_10007839
155 Ga0316593_10010715
156 Ga0316593_10013943
157 Ga0316593_10021468
158 Ga0316593_10022211
159 Ga0316593_10025075
160 Ga0316593_10033409
161 Ga0316593_10046046
162 Ga0316593_10060053
163 Ga0316596_1028683
164 Ga0316596_1030660
165 Ga0316596_1033014
166 Ga0373954_0219184
167 Ga0316574_0002835
168 Ga0316574_0051690
169 Ga0316574_0074376
170 Ga0373937_0033482
171 Ga0316582_0011160
172 Ga0316582_0021135
173 Ga0316582_0031669
174 Ga0316582_0107307
175 Ga0316584_0000098
176 Ga0316584_0003186
177 Ga0316584_0003410
178 Ga0316584_0069613
179 Ga0316584_0071152
180 Ga0316584_0093991
181 Ga0316584_0186672
182 Ga0316584_0366037
183 Ga0395901_0038872
184 Ga0400484_25872
185 Ga0400484_41507
186 Ga0400490_04568
187 Ga0400490_22338
188 Ga0400490_34299
189 Ga0400490_55129
190 Ga0400491_23672
191 Ga0400485_00189
192 Ga0400485_14168
193 Ga0400485_19305
194 Ga0400488_10462
195 Ga0400488_21287
196 Ga0400488_45894
197 Ga0400488_49312
198 Ga0400486_06117
199 Ga0400486_08357
200 Ga0400486_16585
201 Ga0400486_32414
202 Ga0400483_005644
203 Ga0400483_006434
204 Ga0400483_046133
205 Ga0400483_081982
206 Ga0400483_199830
207 Ga0400483_218914
208 Ga0400483_271713
209 Ga0400483_275196
210 Ga0400489_14426
211 Ga0400489_61704
212 Ga0400489_70391
213 Ga0400489_81741
214 Ga0400487_42389
215 Ga0400487_43867
216 Ga0400487_49586
217 Ga0400487_63817
218 Ga0453684_0002307
219 Ga0495629_0063723
220 Ga0495632_0003206
221 Ga0495599_0139908
222 Ga0495658_0113886
223 Ga0495604_0153262
224 Ga0495680_0306044
225 Ga0495601_0062913
226 2740990483

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01379

Porphobil_deam

Porphobilinogen deaminase, dipyromethane cofactor binding domain

55

263

0.98

PF03900

Porphobil_deamC

Porphobilinogen deaminase, C-terminal domain

274

345

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
5h6o-assembly1.cif.gz_A porphobilinogen deaminase from vibrio cholerae 0.9521 3 306
5ov5-assembly1.cif.gz_A bacillus megaterium porphobilinogen deaminase d82e mutant 0.9509 4 308
1ah5-assembly1.cif.gz_A reduced form selenomethionine-labelled hydroxymethylbilane synthase determined by mad 0.9499 4 307
5h6o-assembly1.cif.gz_A porphobilinogen deaminase from vibrio cholerae 0.9488 3 306
1ypn-assembly1.cif.gz_A reduced form hydroxymethylbilane synthase (k59q mutant) crystal structure after 2 hours in a flow cell determined by time-resolved laue diffraction 0.9487 4 307
ID Description Score Start End Superfamily
1ah5A02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.944 97 200 3.40.190.10
5h6oA03 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Porphobilinogen deaminase, C-terminal domain 0.9385 222 306 3.30.160.40
4htgA02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9364 97 200 3.40.190.10
af_B7ZZ56_12_269_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9362 1 35 3.40.50.2000
1ah5A02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.935 97 200 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A2V7L6P8-F1-model_v4 Porphobilinogen deaminase (PBG) (EC 2.5.1.61) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) 0.9845 1 308 GO:0004418
GO:0004852
GO:0005737
GO:0006782
AF-A0A2V7L6P8-F1-model_v4 Porphobilinogen deaminase (PBG) (EC 2.5.1.61) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) 0.9813 1 308 GO:0004418
GO:0004852
GO:0005737
GO:0006782
AF-A0A538ID42-F1-model_v4 Hydroxymethylbilane synthase (EC 2.5.1.61) 0.9769 77 307 GO:0004418
GO:0005737
GO:0006783
AF-A0A3D1Q6L3-F1-model_v4 Hydroxymethylbilane synthase (EC 2.5.1.61) 0.9762 33 307 GO:0004418
GO:0005737
GO:0006783
AF-A0A7C6A0U2-F1-model_v4 Porphobilinogen deaminase (PBG) (EC 2.5.1.61) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) 0.9731 5 307 GO:0004418
GO:0005737
GO:0006782

Map