F055473

General Info

Members Datasets Scaffolds Average Seq Length
109 48 109 354

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0032170|Ga0453684_0032170_3811_4956
Length 381
Sequence LISNVRAILLVFSVLRGVLSFIIIAYMTKQKVVVAMSGGVDSSVAAALLKQQGYDVTGMMLRLWSEPGKEESNRCCTPDSMAQARRVAGILDIPFYVIDAKDVFRETVVQYFLDGYARGETPNPCLMCNRQIRWTFLLNHALALGAEFMATGHYVRRQTTDNGRHELLRAVDHSKDQSYVLHVLKQDQLAHALFPVGKYPKPEIRRIAADFGLPTASRADSQDLCFLAGEDYRNFLQRNASEMLQPGDIVDTDGSLIGRHNGLANYTIGQRKGLNVASPVPLYVVTKQAAHNTLVVGKLEELGFTELTARDVNWVSGDVLREPFRALVKIRYTAKEVEALVSPLEGEQVSVKFDAPVRDVTAGQAAVFYQGELMVGGGIIT

Samples

Sample ID Description Type Environment
1 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
2 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
3 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
4 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
5 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
6 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
7 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
8 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
9 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
10 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
11 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
12 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
13 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
14 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
15 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
16 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
17 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
18 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
19 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
20 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
21 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
22 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
23 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
24 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
25 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
26 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
27 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
28 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
29 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
30 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
31 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
32 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
33 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
34 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
35 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
36 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
37 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
38 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
39 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
40 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
41 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
42 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
43 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
44 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
45 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
46 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
47 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
48 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 100
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065707_10155340 3300005295 Bacteria 1614
2 Ga0070680_100083386 3300005336 Unclassified 2640
3 Ga0070699_100074175 3300005518 Bacteria 2960
4 Ga0068862_100096802 3300005844 Unclassified 2576
5 Ga0081539_10003221 3300005985 Bacteria 20597
6 Ga0075427_10003663 3300006194 Bacteria 2133
7 Ga0075428_100168897 3300006844 Unclassified 2372
8 Ga0075429_100006557 3300006880 Bacteria 10077
9 Ga0075429_100077706 3300006880 Bacteria 2892
10 Ga0075429_100161328 3300006880 Bacteria 1963
11 Ga0075429_100326242 3300006880 Bacteria 1343
12 Ga0075429_100377536 3300006880 Bacteria 1241
13 Ga0075429_100389741 3300006880 Bacteria 1220
14 Ga0114129_10004518 3300009147 Bacteria 19634
15 Ga0114129_10038424 3300009147 Bacteria 6752
16 Ga0114129_10118830 3300009147 Unclassified 3641
17 Ga0114129_10149817 3300009147 Bacteria 3193
18 Ga0105242_10077306 3300009176 Bacteria 2776
19 Ga0105249_10020044 3300009553 Bacteria 5973
20 Ga0207660_10115655 3300025917 Unclassified 2025
21 Ga0207709_10026816 3300025935 Bacteria 3313
22 Ga0207674_10060874 3300026116 Bacteria 3816
23 Ga0265334_10015928 3300028573 Bacteria 3117
24 Ga0265318_10005632 3300028577 Bacteria 5866
25 Ga0265338_10035622 3300028800 Bacteria 4778
26 Ga0265340_10008693 3300031247 Bacteria 5477
27 Ga0265327_10022962 3300031251 Bacteria 3710
28 Ga0265316_10084615 3300031344 Bacteria 2429
29 Ga0316579_10001820 3300031691 Bacteria 7871
30 Ga0316576_10002157 3300031727 Bacteria 11094
31 Ga0316576_10022117 3300031727 Bacteria 4412
32 Ga0316576_10041592 3300031727 Bacteria 3309
33 Ga0316576_10122198 3300031727 Bacteria 1956
34 Ga0316576_10236227 3300031727 Bacteria 1374
35 Ga0316578_10006355 3300031728 Bacteria 5822
36 Ga0316578_10011513 3300031728 Unclassified 4633
37 Ga0316578_10016102 3300031728 Bacteria 4039
38 Ga0316577_10005825 3300031733 Bacteria 6484
39 Ga0316577_10013643 3300031733 Unclassified 4449
40 Ga0316577_10040599 3300031733 Bacteria 2603
41 Ga0316577_10160843 3300031733 Unclassified 1267
42 Ga0307411_10144284 3300032005 Unclassified 1760
43 Ga0307415_100142258 3300032126 Unclassified 1834
44 Ga0316583_10000391 3300032133 Bacteria 12726
45 Ga0316585_10002354 3300032137 Bacteria 5091
46 Ga0316585_10041751 3300032137 Unclassified 1462
47 Ga0316580_10000593 3300032139 Bacteria 8506
48 Ga0316580_10019176 3300032139 Bacteria 2105
49 Ga0316574_0001477 3300035398 Bacteria 11191
50 Ga0316582_0001419 3300036647 Bacteria 10480
51 Ga0316582_0003058 3300036647 Bacteria 8079
52 Ga0316582_0027836 3300036647 Bacteria 3419
53 Ga0316584_0002388 3300036712 Bacteria 11861
54 Ga0316584_0007773 3300036712 Archaea 7352
55 Ga0316581_0014684 3300037588 Bacteria 2231
56 Ga0395901_0165805 3300038443 Bacteria 2320
57 Ga0451577_0000864 3300042876 Bacteria 45147
58 Ga0451577_0010286 3300042876 Bacteria 8954
59 Ga0451577_0201960 3300042876 Unclassified 1795
60 Ga0451577_0251473 3300042876 Unclassified 1600
61 Ga0451577_0556310 3300042876 Unclassified 1041
62 Ga0453683_0000712 3300044673 Bacteria 34352
63 Ga0453683_0006635 3300044673 Bacteria 7924
64 Ga0453683_0015635 3300044673 Bacteria 4911
65 Ga0453683_0024729 3300044673 Bacteria 3819
66 Ga0453683_0025098 3300044673 Unclassified 3789
67 Ga0453683_0028174 3300044673 Bacteria 3557
68 Ga0453683_0047906 3300044673 Bacteria 2680
69 Ga0453683_0098131 3300044673 Bacteria 1839
70 Ga0453684_0000021 3300044712 Bacteria 873490
71 Ga0453684_0000318 3300044712 Bacteria 203553
72 Ga0453684_0000484 3300044712 Bacteria 157641
73 Ga0453684_0002742 3300044712 Bacteria 41715
74 Ga0453684_0003534 3300044712 Bacteria 34965
75 Ga0453684_0003986 3300044712 Bacteria 32255
76 Ga0453684_0005147 3300044712 Bacteria 26310
77 Ga0453684_0014411 3300044712 Bacteria 12653
78 Ga0453684_0028446 3300044712 Bacteria 7975
79 Ga0453684_0032170 3300044712 Bacteria 7351
80 Ga0453684_0039213 3300044712 Bacteria 6460
81 Ga0453684_0040895 3300044712 Bacteria 6283
82 Ga0453684_0046935 3300044712 Bacteria 5736
83 Ga0453684_0059047 3300044712 Bacteria 4950
84 Ga0453684_0070010 3300044712 Unclassified 4445
85 Ga0453684_0089544 3300044712 Bacteria 3805
86 Ga0453684_0108496 3300044712 Bacteria 3378
87 Ga0453684_0153838 3300044712 Bacteria 2729
88 Ga0453684_0160038 3300044712 Unclassified 2664
89 Ga0453684_0182636 3300044712 Unclassified 2461
90 Ga0453684_0204975 3300044712 Unclassified 2296
91 Ga0453684_0237015 3300044712 Unclassified 2103
92 Ga0453684_0338861 3300044712 Bacteria 1698
93 Ga0453684_0344131 3300044712 Unclassified 1683
94 Ga0451576_0000046 3300045051 Bacteria 334064
95 Ga0451576_0233429 3300045051 Unclassified 1921
96 Ga0501039_0128348 3300049575 Bacteria 1990
97 Ga0501040_0243619 3300049576 Unclassified 1282
98 Ga0501075_0252015 3300049591 Bacteria 1346
99 Ga0501076_0159305 3300049592 Unclassified 1838
100 Ga0501081_0117034 3300049743 Bacteria 1895
101 nmdc:mga05p37_1552_c1 3300050507 Bacteria 18635
102 nmdc:mga05p37_30795_c1 3300050507 Bacteria 6548
103 nmdc:mga09592_142343_c1 3300050508 Bacteria 2067
104 nmdc:mga09592_290492_c1 3300050508 Bacteria 1417
105 nmdc:mga09592_33863_c1 3300050508 Bacteria 4268
106 nmdc:mga09592_866_c1 3300050508 Bacteria 23678
107 nmdc:mga06r32_181550_c1 3300050510 Bacteria 2090
108 Ga0501084_0044777 3300054114 Bacteria 3705
109 Ga0501082_0639127 3300060353 Unclassified 931

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049576 Ga0501040_0243619 Ga0501040_0243619_11_865 284
2 3300060353 Ga0501082_0639127 Ga0501082_0639127_54_908 284
3 3300042876 Ga0451577_0251473 Ga0451577_0251473_662_1564 300
4 3300044673 Ga0453683_0024729 Ga0453683_0024729_2871_3785 300
5 3300042876 Ga0451577_0556310 Ga0451577_0556310_13_969 318
6 3300005518 Ga0070699_100074175 Ga0070699_1000741753 328
7 3300031727 Ga0316576_10122198 Ga0316576_101221982 332
8 3300031733 Ga0316577_10005825 Ga0316577_100058252 332
9 3300044712 Ga0453684_0000484 Ga0453684_0000484_63694_64773 335
10 3300031727 Ga0316576_10236227 Ga0316576_102362272 343
11 3300031727 Ga0316576_10002157 Ga0316576_100021574 345
12 3300031727 Ga0316576_10022117 Ga0316576_100221172 345
13 3300031728 Ga0316578_10006355 Ga0316578_100063552 345
14 3300031728 Ga0316578_10011513 Ga0316578_100115133 345
15 3300032133 Ga0316583_10000391 Ga0316583_100003916 345
16 3300032137 Ga0316585_10002354 Ga0316585_100023545 345
17 3300032139 Ga0316580_10000593 Ga0316580_100005933 345
18 3300035398 Ga0316574_0001477 Ga0316574_0001477_4473_5579 345
19 3300036647 Ga0316582_0003058 Ga0316582_0003058_3957_5063 345
20 3300037588 Ga0316581_0014684 Ga0316581_0014684_633_1739 345
21 3300038443 Ga0395901_0165805 Ga0395901_0165805_873_1964 345
22 3300006880 Ga0075429_100377536 Ga0075429_1003775361 346
23 3300028577 Ga0265318_10005632 Ga0265318_100056323 346
24 3300028800 Ga0265338_10035622 Ga0265338_100356222 346
25 3300031247 Ga0265340_10008693 Ga0265340_100086934 346
26 3300036647 Ga0316582_0027836 Ga0316582_0027836_1117_2160 346
27 3300044673 Ga0453683_0006635 Ga0453683_0006635_6359_7399 346
28 3300044712 Ga0453684_0046935 Ga0453684_0046935_1149_2201 346
29 3300044712 Ga0453684_0059047 Ga0453684_0059047_2065_3105 346
30 3300044712 Ga0453684_0000318 Ga0453684_0000318_126225_127379 348
31 3300044712 Ga0453684_0000021 Ga0453684_0000021_488224_489309 349
32 3300006880 Ga0075429_100326242 Ga0075429_1003262422 352
33 3300009176 Ga0105242_10077306 Ga0105242_100773063 352
34 3300025935 Ga0207709_10026816 Ga0207709_100268163 352
35 3300031691 Ga0316579_10001820 Ga0316579_100018205 352
36 3300031727 Ga0316576_10041592 Ga0316576_100415925 352
37 3300031728 Ga0316578_10016102 Ga0316578_100161025 352
38 3300031733 Ga0316577_10013643 Ga0316577_100136432 352
39 3300031733 Ga0316577_10040599 Ga0316577_100405993 352
40 3300032139 Ga0316580_10019176 Ga0316580_100191763 352
41 3300036647 Ga0316582_0001419 Ga0316582_0001419_8973_10070 352
42 3300036712 Ga0316584_0002388 Ga0316584_0002388_7417_8574 352
43 3300036712 Ga0316584_0007773 Ga0316584_0007773_1627_2724 352
44 3300044673 Ga0453683_0015635 Ga0453683_0015635_3758_4828 352
45 3300044673 Ga0453683_0025098 Ga0453683_0025098_1725_2816 352
46 3300044673 Ga0453683_0098131 Ga0453683_0098131_162_1220 352
47 3300044712 Ga0453684_0003534 Ga0453684_0003534_11473_12534 352
48 3300044712 Ga0453684_0070010 Ga0453684_0070010_567_1631 352
49 3300044712 Ga0453684_0160038 Ga0453684_0160038_341_1432 352
50 3300044712 Ga0453684_0182636 Ga0453684_0182636_533_1597 352
51 3300045051 Ga0451576_0000046 Ga0451576_0000046_5552_6622 352
52 3300049575 Ga0501039_0128348 Ga0501039_0128348_212_1270 352
53 3300049592 Ga0501076_0159305 Ga0501076_0159305_508_1566 352
54 3300049743 Ga0501081_0117034 Ga0501081_0117034_116_1174 352
55 3300054114 Ga0501084_0044777 Ga0501084_0044777_1308_2366 352
56 3300005295 Ga0065707_10155340 Ga0065707_101553402 353
57 3300005336 Ga0070680_100083386 Ga0070680_1000833861 353
58 3300005844 Ga0068862_100096802 Ga0068862_1000968022 353
59 3300005985 Ga0081539_10003221 Ga0081539_100032217 353
60 3300006194 Ga0075427_10003663 Ga0075427_100036632 353
61 3300006844 Ga0075428_100168897 Ga0075428_1001688972 353
62 3300006880 Ga0075429_100006557 Ga0075429_1000065575 353
63 3300006880 Ga0075429_100077706 Ga0075429_1000777062 353
64 3300006880 Ga0075429_100161328 Ga0075429_1001613282 353
65 3300006880 Ga0075429_100389741 Ga0075429_1003897411 353
66 3300009147 Ga0114129_10004518 Ga0114129_100045184 353
67 3300009147 Ga0114129_10038424 Ga0114129_100384244 353
68 3300009147 Ga0114129_10118830 Ga0114129_101188302 353
69 3300009147 Ga0114129_10149817 Ga0114129_101498172 353
70 3300009553 Ga0105249_10020044 Ga0105249_100200446 353
71 3300025917 Ga0207660_10115655 Ga0207660_101156552 353
72 3300026116 Ga0207674_10060874 Ga0207674_100608742 353
73 3300028573 Ga0265334_10015928 Ga0265334_100159285 353
74 3300031251 Ga0265327_10022962 Ga0265327_100229625 353
75 3300031344 Ga0265316_10084615 Ga0265316_100846152 353
76 3300031733 Ga0316577_10160843 Ga0316577_101608432 353
77 3300032005 Ga0307411_10144284 Ga0307411_101442842 353
78 3300032126 Ga0307415_100142258 Ga0307415_1001422583 353
79 3300032137 Ga0316585_10041751 Ga0316585_100417512 353
80 3300042876 Ga0451577_0000864 Ga0451577_0000864_30697_31764 353
81 3300042876 Ga0451577_0010286 Ga0451577_0010286_3223_4293 353
82 3300042876 Ga0451577_0201960 Ga0451577_0201960_679_1746 353
83 3300044673 Ga0453683_0000712 Ga0453683_0000712_18797_19867 353
84 3300044673 Ga0453683_0028174 Ga0453683_0028174_516_1589 353
85 3300044673 Ga0453683_0047906 Ga0453683_0047906_364_1437 353
86 3300044712 Ga0453684_0002742 Ga0453684_0002742_4802_5869 353
87 3300044712 Ga0453684_0003986 Ga0453684_0003986_8114_9178 353
88 3300044712 Ga0453684_0005147 Ga0453684_0005147_2884_3951 353
89 3300044712 Ga0453684_0014411 Ga0453684_0014411_3904_4971 353
90 3300044712 Ga0453684_0028446 Ga0453684_0028446_4978_6081 353
91 3300044712 Ga0453684_0032170 Ga0453684_0032170_3811_4956 353
92 3300044712 Ga0453684_0039213 Ga0453684_0039213_3799_4866 353
93 3300044712 Ga0453684_0040895 Ga0453684_0040895_4836_5903 353
94 3300044712 Ga0453684_0089544 Ga0453684_0089544_1951_3018 353
95 3300044712 Ga0453684_0108496 Ga0453684_0108496_124_1188 353
96 3300044712 Ga0453684_0153838 Ga0453684_0153838_942_2012 353
97 3300044712 Ga0453684_0204975 Ga0453684_0204975_622_1686 353
98 3300044712 Ga0453684_0237015 Ga0453684_0237015_508_1581 353
99 3300044712 Ga0453684_0338861 Ga0453684_0338861_324_1409 353
100 3300044712 Ga0453684_0344131 Ga0453684_0344131_92_1153 353
101 3300045051 Ga0451576_0233429 Ga0451576_0233429_444_1505 353
102 3300049591 Ga0501075_0252015 Ga0501075_0252015_144_1205 353
103 3300050507 nmdc:mga05p37_1552_c1 nmdc:mga05p37_1552_c1_2149_3210 353
104 3300050507 nmdc:mga05p37_30795_c1 nmdc:mga05p37_30795_c1_3747_4811 353
105 3300050508 nmdc:mga09592_142343_c1 nmdc:mga09592_142343_c1_499_1563 353
106 3300050508 nmdc:mga09592_290492_c1 nmdc:mga09592_290492_c1_314_1375 353
107 3300050508 nmdc:mga09592_33863_c1 nmdc:mga09592_33863_c1_3128_4189 353
108 3300050508 nmdc:mga09592_866_c1 nmdc:mga09592_866_c1_21353_22414 353
109 3300050510 nmdc:mga06r32_181550_c1 nmdc:mga06r32_181550_c1_603_1667 353

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03054

tRNA_Me_trans

tRNA methyl transferase HUP domain

30

229

0.98

PF20258

tRNA_Me_trans_C

Aminomethyltransferase beta-barrel domain

304

380

0.98

PF20259

tRNA_Me_trans_M

tRNA methyl transferase PRC-barrel domain

233

298

0.95

PF02568

ThiI

Thiamine biosynthesis protein (ThiI)

27

131

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
2hma-assembly1.cif.gz_A-2 the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmu from streptococcus pneumoniae 0.9259 2 353
2deu-assembly2.cif.gz_B cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the adenylated intermediate state 0.9235 1 353
2deu-assembly2.cif.gz_B cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the adenylated intermediate state 0.921 1 353
2der-assembly1.cif.gz_A cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the initial trna binding state 0.9155 1 353
2hma-assembly1.cif.gz_A-2 the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmu from streptococcus pneumoniae 0.9082 2 353
ID Description Score Start End Superfamily
2derA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9505 1 186 3.40.50.620
af_P9WJS5_275_357_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9459 278 352 2.40.30.10
2hmaA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9391 3 209 3.40.50.620
2detA03 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9344 274 353 2.40.30.10
af_P9WJS5_1_205_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9286 3 208 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A1W9WDL3-F1-model_v4 tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) 0.9795 33 353 GO:0000049
GO:0002143
GO:0005524
GO:0005737
GO:0103016
AF-A0A350MSX1-F1-model_v4 tRNA 2-thiouridine(34) synthase MnmA 0.9767 232 353 GO:0002143
GO:0016783
AF-A0A524HE41-F1-model_v4 tRNA-uridine 2-sulfurtransferase (EC 2.8.1.13) 0.9752 2 180 GO:0002143
GO:0103016
AF-A0A1G0FI49-F1-model_v4 tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) 0.9748 8 352 GO:0000049
GO:0002143
GO:0005524
GO:0005737
GO:0103016
AF-X1E7Q1-F1-model_v4 tRNA-specific 2-thiouridylase MnmA-like central domain-containing protein 0.9733 20 307 GO:0000049
GO:0002143
GO:0005524
GO:0016783

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pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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