F038810

General Info

Members Datasets Scaffolds Average Seq Length
106 85 212 430

Family's Representative Sequence

Representative Sequence 3300031995|Ga0307409_100023841|Ga0307409_1000238412
Length 455
Sequence MRAVDIIRAKRDGEALSREAIESFVRGVTSGAWEDYQASALLMAIVLKGMSAEETGWLTDAMARSGDRVTLDHIPGIKVGKHSTGGVGDKVSIVLAPLAASCGVVVPKMSGRGLGHTGGTLDKLESIPGFRIALSLDEYKKILGEVGCCLISQTENIAPADKKLYALRDVTATIESLPLIAASVMSKKLAEGSTALVLDVKCGRGAFMPTPDAARALARALVSIGTAAGLRTEAFITRMDAPLGCAVGNSVEIAECIEVLSGKGPADLAALVVRLASRMVLLGGKASSETDAEQKVRASLGSGAAREKLRQMIRWQGGDASIVDDVRRLPAARHSHVVTAATGGYLASLDALLVGRTAVALGAGRDKKSDPVDLSAGILLRKKPGDAVAAGEPLLELRYNEVSRLAAALQLATEAVVIGERPPAAAPLVMGWVHDGGEQMFVDGFATDGAASADR

Samples

Sample ID Description Type Environment
1 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
8 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
9 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
12 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
13 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
14 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
15 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
16 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
17 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
18 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
19 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
24 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
25 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
26 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
27 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
36 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
37 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
38 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
39 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
40 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
41 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
42 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
43 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
44 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
45 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
46 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
47 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
48 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
49 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
50 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
51 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
52 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
53 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
54 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
55 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
56 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
57 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
58 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
59 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
60 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
64 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
66 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
68 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
69 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
70 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
71 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
72 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
73 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
74 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
77 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
78 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
79 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
80 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
81 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
82 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
83 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
84 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
85 2837183177 Egibacter rhizosphaerae EGI 80759 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.06
Metatranscriptomes 0
Isolates 0.94

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.94
Nodule 0.94
Rhizoplane 0.94
Rhizosphere 91.51
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307409_100023841 3300031995 Bacteria 4251
2 rootL2_10226253 3300003322 Bacteria 2418
3 JGI25407J50210_10002114 3300003373 Bacteria 4640
4 Ga0070683_100000006 3300005329 Bacteria 361071
5 Ga0070683_100130512 3300005329 Bacteria 2378
6 Ga0070683_100207267 3300005329 Bacteria 1862
7 Ga0070680_100138645 3300005336 Bacteria 2039
8 Ga0070714_100184238 3300005435 Bacteria 1902
9 Ga0070700_100001453 3300005441 Bacteria 11785
10 Ga0070679_100044745 3300005530 Bacteria 4410
11 Ga0070684_100277489 3300005535 Bacteria 1535
12 Ga0068855_100110956 3300005563 Bacteria 3148
13 Ga0081455_10003317 3300005937 Bacteria 18600
14 Ga0081538_10000008 3300005981 Bacteria 173780
15 Ga0075428_100016321 3300006844 Bacteria 8209
16 Ga0075428_100035367 3300006844 Bacteria 5507
17 Ga0075431_100019171 3300006847 Bacteria 6972
18 Ga0075434_100018854 3300006871 Bacteria 6669
19 Ga0075434_100036667 3300006871 Bacteria 4851
20 Ga0075429_100074233 3300006880 Bacteria 2963
21 Ga0075436_100049317 3300006914 Bacteria 2905
22 Ga0079104_1001861 3300006946 Bacteria 12792
23 Ga0075435_100009009 3300007076 Bacteria 7198
24 Ga0105240_10027187 3300009093 Bacteria 7495
25 Ga0111539_10176532 3300009094 Bacteria 2495
26 Ga0111539_10183968 3300009094 Bacteria 2440
27 Ga0114129_10024605 3300009147 Bacteria 8532
28 Ga0114129_10086933 3300009147 Bacteria 4335
29 Ga0105248_10135008 3300009177 Bacteria 2783
30 Ga0163163_10020425 3300014325 Bacteria 6235
31 Ga0157380_10035754 3300014326 Bacteria 3839
32 Ga0157380_10089893 3300014326 Bacteria 2531
33 Ga0157380_10228304 3300014326 Bacteria 1670
34 Ga0213876_10025781 3300021384 Bacteria 3099
35 Ga0207649_10185595 3300025920 Bacteria 1459
36 Ga0207650_10005200 3300025925 Bacteria 8873
37 Ga0207704_10066160 3300025938 Bacteria 2267
38 Ga0207711_10071285 3300025941 Bacteria 3015
39 Ga0207661_10129046 3300025944 Bacteria 2163
40 Ga0207703_10048625 3300026035 Bacteria 3425
41 Ga0207708_10001542 3300026075 Bacteria 17184
42 Ga0207708_10113074 3300026075 Bacteria 2109
43 Ga0207675_100025088 3300026118 Bacteria 5549
44 Ga0207675_100258757 3300026118 Bacteria 1686
45 Ga0207428_10001154 3300027907 Bacteria 28569
46 Ga0207428_10021249 3300027907 Bacteria 5497
47 Ga0265319_1017030 3300028563 Bacteria 2774
48 Ga0316578_10061885 3300031728 Bacteria 2206
49 Ga0307409_100106443 3300031995 Bacteria 2341
50 Ga0307416_100157797 3300032002 Bacteria 2092
51 Ga0373933_0130669 3300035724 Bacteria 1579
52 Ga0373937_0012419 3300036401 Bacteria 7491
53 Ga0395900_0081946 3300037418 Bacteria 3314
54 Ga0395901_0206551 3300038443 Bacteria 2057
55 Ga0436365_0313207 3300039437 Bacteria 11313
56 Ga0453684_0036455 3300044712 Bacteria 6778
57 Ga0453684_0061947 3300044712 Bacteria 4796
58 Ga0466971_0051729 3300044719 Bacteria 1849
59 Ga0466957_0004858 3300044842 Bacteria 7521
60 Ga0451576_0089214 3300045051 Bacteria 3207
61 Ga0451576_0315633 3300045051 Bacteria 1635
62 Ga0466967_0019411 3300045976 Bacteria 5465
63 Ga0495628_0081177 3300046516 Bacteria 2519
64 Ga0495643_0008444 3300046522 Bacteria 6517
65 Ga0495623_0133877 3300046679 Bacteria 1481
66 Ga0495624_0021776 3300046690 Bacteria 4247
67 Ga0495604_0000522 3300047317 Bacteria 33874
68 Ga0495604_0044177 3300047317 Bacteria 3484
69 Ga0495674_0002027 3300047319 Bacteria 19895
70 Ga0495675_0113492 3300047444 Bacteria 1690
71 Ga0495679_010986 3300047446 Bacteria 3521
72 Ga0496104_0431797 3300048907 Bacteria 1229
73 Ga0496118_0001815 3300048921 Bacteria 30742
74 Ga0496126_0305248 3300048929 Bacteria 1311
75 Ga0501034_0002142 3300049571 Bacteria 24528
76 Ga0501037_0061698 3300049573 Bacteria 2734
77 Ga0501040_0066921 3300049576 Bacteria 2475
78 Ga0501043_0082085 3300049579 Bacteria 2533
79 Ga0501046_0000814 3300049580 Bacteria 30383
80 Ga0501047_0053172 3300049581 Bacteria 3915
81 Ga0501047_0095907 3300049581 Bacteria 2844
82 Ga0501048_0033548 3300049582 Bacteria 3708
83 Ga0501070_0001311 3300049586 Bacteria 22276
84 Ga0501071_0007551 3300049587 Bacteria 7156
85 Ga0501071_0082171 3300049587 Bacteria 2359
86 Ga0501073_0008314 3300049589 Bacteria 7695
87 Ga0501075_0035105 3300049591 Bacteria 3739
88 Ga0501077_0171753 3300049593 Bacteria 1377
89 Ga0501079_0140091 3300049741 Bacteria 1884
90 Ga0501080_0078562 3300049742 Bacteria 3069
91 Ga0501080_0143225 3300049742 Bacteria 2210
92 Ga0501035_0001617 3300049822 Bacteria 22781
93 Ga0501044_0022244 3300049823 Bacteria 6757
94 Ga0501044_0103760 3300049823 Bacteria 2858
95 Ga0501045_0010887 3300049824 Bacteria 6374
96 Ga0501045_0083682 3300049824 Bacteria 2354
97 nmdc:mga05p37_19093_c1 3300050507 Bacteria 8290
98 nmdc:mga05p37_24963_c1 3300050507 Bacteria 7265
99 nmdc:mga09592_169564_c1 3300050508 Bacteria 1887
100 nmdc:mga06r32_3417_c1 3300050510 Bacteria 13381
101 nmdc:mga08y16_91534_c1 3300050511 Bacteria 3170
102 Ga0500555_012993 3300053103 Bacteria 2400
103 Ga0501082_0004406 3300060353 Bacteria 12294
104 Ga0466962_0035583 3300061719 Bacteria 2384
105 Ga0530510_0127111 3300061734 Bacteria 1874
106 2837187251 2837183177 Bacteria 4637169
107 Ga0307409_100023841
108 rootL2_10226253
109 JGI25407J50210_10002114
110 Ga0070683_100000006
111 Ga0070683_100130512
112 Ga0070683_100207267
113 Ga0070680_100138645
114 Ga0070714_100184238
115 Ga0070700_100001453
116 Ga0070679_100044745
117 Ga0070684_100277489
118 Ga0068855_100110956
119 Ga0081455_10003317
120 Ga0081538_10000008
121 Ga0075428_100016321
122 Ga0075428_100035367
123 Ga0075431_100019171
124 Ga0075434_100018854
125 Ga0075434_100036667
126 Ga0075429_100074233
127 Ga0075436_100049317
128 Ga0079104_1001861
129 Ga0075435_100009009
130 Ga0105240_10027187
131 Ga0111539_10176532
132 Ga0111539_10183968
133 Ga0114129_10024605
134 Ga0114129_10086933
135 Ga0105248_10135008
136 Ga0163163_10020425
137 Ga0157380_10035754
138 Ga0157380_10089893
139 Ga0157380_10228304
140 Ga0213876_10025781
141 Ga0207649_10185595
142 Ga0207650_10005200
143 Ga0207704_10066160
144 Ga0207711_10071285
145 Ga0207661_10129046
146 Ga0207703_10048625
147 Ga0207708_10001542
148 Ga0207708_10113074
149 Ga0207675_100025088
150 Ga0207675_100258757
151 Ga0207428_10001154
152 Ga0207428_10021249
153 Ga0265319_1017030
154 Ga0316578_10061885
155 Ga0307409_100106443
156 Ga0307416_100157797
157 Ga0373933_0130669
158 Ga0373937_0012419
159 Ga0395900_0081946
160 Ga0395901_0206551
161 Ga0436365_0313207
162 Ga0453684_0036455
163 Ga0453684_0061947
164 Ga0466971_0051729
165 Ga0466957_0004858
166 Ga0451576_0089214
167 Ga0451576_0315633
168 Ga0466967_0019411
169 Ga0495628_0081177
170 Ga0495643_0008444
171 Ga0495623_0133877
172 Ga0495624_0021776
173 Ga0495604_0000522
174 Ga0495604_0044177
175 Ga0495674_0002027
176 Ga0495675_0113492
177 Ga0495679_010986
178 Ga0496104_0431797
179 Ga0496118_0001815
180 Ga0496126_0305248
181 Ga0501034_0002142
182 Ga0501037_0061698
183 Ga0501040_0066921
184 Ga0501043_0082085
185 Ga0501046_0000814
186 Ga0501047_0053172
187 Ga0501047_0095907
188 Ga0501048_0033548
189 Ga0501070_0001311
190 Ga0501071_0007551
191 Ga0501071_0082171
192 Ga0501073_0008314
193 Ga0501075_0035105
194 Ga0501077_0171753
195 Ga0501079_0140091
196 Ga0501080_0078562
197 Ga0501080_0143225
198 Ga0501035_0001617
199 Ga0501044_0022244
200 Ga0501044_0103760
201 Ga0501045_0010887
202 Ga0501045_0083682
203 nmdc:mga05p37_19093_c1
204 nmdc:mga05p37_24963_c1
205 nmdc:mga09592_169564_c1
206 nmdc:mga06r32_3417_c1
207 nmdc:mga08y16_91534_c1
208 Ga0500555_012993
209 Ga0501082_0004406
210 Ga0466962_0035583
211 Ga0530510_0127111
212 2837187251

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02885

Glycos_trans_3N

Glycosyl transferase family, helical bundle domain

4

66

0.98

PF00591

Glycos_transf_3

Glycosyl transferase family, a/b domain

76

306

0.96

PF07831

PYNP_C

Pyrimidine nucleoside phosphorylase C-terminal domain

345

419

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
1brw-assembly1.cif.gz_B the crystal structure of pyrimidine nucleoside phosphorylase in a closed conformation 0.9778 1 433
1brw-assembly1.cif.gz_B the crystal structure of pyrimidine nucleoside phosphorylase in a closed conformation 0.9756 1 433
2wk6-assembly1.cif.gz_B structural features of native human thymidine phosphorylase and in complex with 5-iodouracil 0.9665 2 433
2j0f-assembly1.cif.gz_C structural basis for non-competitive product inhibition in human thymidine phosphorylase: implication for drug design 0.9586 1 434
2wk6-assembly1.cif.gz_B structural features of native human thymidine phosphorylase and in complex with 5-iodouracil 0.9578 2 433
ID Description Score Start End Superfamily
af_Q2FWC1_1_67_1.20.970.10 Mainly Alpha;Up-down Bundle;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 1.002 1 66 1.20.970.10
1brwB03 Mainly Alpha;Up-down Bundle;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 1.002 1 66 1.20.970.10
af_P9WFS1_8_72_1.20.970.10 Mainly Alpha;Up-down Bundle;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.9999 5 67 1.20.970.10
1brwA03 Mainly Alpha;Up-down Bundle;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.9974 1 66 1.20.970.10
2wk6B01 Mainly Alpha;Up-down Bundle;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.9953 2 66 1.20.970.10
ID Description Score Start End GO Terms
AF-A0A357T178-F1-model_v4 Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) 0.9856 205 432 GO:0004645
GO:0005829
GO:0006206
GO:0006213
GO:0009032
GO:0047847
AF-A0A535G3I0-F1-model_v4 Pyrimidine-nucleoside phosphorylase 0.9851 229 434 GO:0004645
GO:0005829
GO:0006206
GO:0006213
GO:0009032
AF-A0A4V1UX56-F1-model_v4 deleted 0.982 102 432
AF-A0A3B9J9E8-F1-model_v4 Pyrimidine-nucleoside phosphorylase 0.9813 198 429 GO:0004645
GO:0005829
GO:0006206
GO:0006213
GO:0009032
AF-A0A7V3MBT3-F1-model_v4 Thymidine phosphorylase (EC 2.4.2.4) 0.9808 1 432 GO:0004645
GO:0005829
GO:0006206
GO:0006213
GO:0009032

Map