F424190

General Info

Members Datasets Scaffolds Average Seq Length
366 243 732 183

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2862507626|2862513744
Length 217
Sequence HAILTALLEKPSSGLELTRRFDKSIGYFWSATHQQIYRELGKLEAEGLIRALSAEQPARGQKKSYEVLPAGRTELARWASASQDPKPLRDALLLRLRAAAVVGTEGLEADFRRHLELHERQLAEYKDIEQRDFPPGRDGREDRLRHLVLRAGIDLETFWTRWLEHALTEFAELPDTERAERSERTGRAEPTGSPGSVPTDPSDSGRAEPDGSGSGGK

Samples

Sample ID Description Type Environment
1 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
6 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
7 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
8 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
9 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
10 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
11 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
12 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
13 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
14 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
15 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
16 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
17 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
18 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
19 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
20 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
21 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
22 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
23 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
30 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
31 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
32 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
34 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
35 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
36 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
37 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
38 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
39 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
40 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
41 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
42 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
43 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
44 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
45 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
46 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
47 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
48 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
49 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
50 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
51 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
52 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
53 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
54 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
55 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
56 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
57 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
58 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
59 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
60 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
61 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
62 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
63 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
64 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
65 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
66 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
67 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
68 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
69 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
70 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
71 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
72 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
73 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
74 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
75 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
76 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
77 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
78 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
79 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
80 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
81 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
82 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
83 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
84 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
85 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
86 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
87 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
88 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
89 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
90 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
91 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
92 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
93 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
94 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
95 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
96 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
97 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
98 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
99 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
100 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
101 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
102 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
103 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
104 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
105 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
106 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
107 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
108 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
109 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
110 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
111 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
112 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
113 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
114 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
115 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
116 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
117 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
118 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
119 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
120 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
121 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
122 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
123 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
124 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
125 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
126 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
127 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
128 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
129 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
130 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
131 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
132 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
133 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
134 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
135 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
136 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
137 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
138 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
139 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
140 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
141 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
142 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
143 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
144 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
145 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
146 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
147 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
148 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
149 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
150 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
152 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
153 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
154 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
155 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
156 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
157 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
158 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
159 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
160 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
161 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
162 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
163 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
164 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
165 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
166 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
167 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
168 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
169 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
170 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
171 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
172 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
173 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
174 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
175 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
176 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
177 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
178 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
179 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
180 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
181 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
182 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
183 2643221548 Streptomyces sp. Root55 Isolate Unclassified
184 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
185 2643221647 Streptomyces sp. Root369 Isolate Unclassified
186 2643221670 Streptomyces sp. Root431 Isolate Unclassified
187 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
188 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
189 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
190 2643221714 Streptomyces sp. Root264 Isolate Unclassified
191 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
192 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
193 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
194 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
195 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
196 2808606448 Streptomyces sp. 193411 Isolate Unclassified
197 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
198 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
199 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
200 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
201 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
202 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
203 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
204 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
205 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
206 2862574272 Streptomyces sp. AcE210 Isolate Nodule
207 2867428634 Streptomyces sp. RP5T Isolate Unclassified
208 2867475112 Streptomyces sp. TM32 Isolate Unclassified
209 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
210 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
211 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
212 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
213 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
214 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
215 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
216 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
217 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
218 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
219 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
220 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
221 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
222 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
223 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
224 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
225 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
226 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
227 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
228 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
229 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
230 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
231 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
232 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
233 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
234 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
235 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
236 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
237 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere
238 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
239 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
240 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
241 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
242 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
243 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 81.69
Metatranscriptomes 0
Isolates 18.31

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.46
Nodule 1.37
Rhizoplane 0.55
Rhizosphere 75.41
Stem 0
Stem Tuber 0
Unclassified 0.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10040392 3300003215 Bacteria 1447
2 rootH1_10020419 3300003316 Bacteria 3089
3 rootH1_10046467 3300003316 Bacteria 3771
4 rootH2_10023985 3300003320 Bacteria 3538
5 rootL2_10013953 3300003322 Bacteria 1910
6 rootL2_10013954 3300003322 Bacteria 2985
7 Ga0070698_100299117 3300005471 Bacteria 1540
8 Ga0068854_101190615 3300005578 Bacteria 682
9 Ga0068856_100410538 3300005614 Bacteria 1374
10 Ga0081455_10045369 3300005937 Bacteria 3824
11 Ga0075365_10130984 3300006038 Bacteria 1736
12 Ga0075368_10072146 3300006042 Bacteria 1396
13 Ga0075363_100007390 3300006048 Bacteria 5045
14 Ga0075370_10197610 3300006353 Bacteria 1186
15 Ga0099826_10169836 3300006948 Bacteria 1225
16 Ga0105243_10474977 3300009148 Bacteria 1179
17 Ga0105238_10620169 3300009551 Bacteria 1090
18 Ga0105246_10107154 3300011119 Bacteria 2046
19 Ga0182008_10001342 3300014497 Bacteria 16729
20 Ga0182007_10000651 3300015262 Bacteria 19925
21 Ga0183367_1003 3300015688 Bacteria 814276
22 Ga0213872_10000065 3300021361 Bacteria 96648
23 Ga0213872_10017313 3300021361 Bacteria 3332
24 Ga0213872_10044812 3300021361 Bacteria 2012
25 Ga0213872_10088315 3300021361 Bacteria 1388
26 Ga0209758_1004407 3300025297 Bacteria 11739
27 Ga0207426_1000824 3300025302 Bacteria 33183
28 Ga0207426_1004601 3300025302 Bacteria 6654
29 Ga0207426_1061143 3300025302 Bacteria 1083
30 Ga0207647_10017418 3300025904 Bacteria 4883
31 Ga0207684_10876390 3300025910 Bacteria 756
32 Ga0207694_10387329 3300025924 Bacteria 1161
33 Ga0207640_10178531 3300025981 Bacteria 1590
34 Ga0207639_10044869 3300026041 Bacteria 3327
35 Ga0207702_10962980 3300026078 Bacteria 846
36 Ga0209371_1049598 3300027312 Bacteria 811
37 Ga0209282_1172274 3300027666 Bacteria 1023
38 Ga0209813_10057894 3300027866 Bacteria 1230
39 Ga0268266_11342072 3300028379 Bacteria 691
40 Ga0307517_10002021 3300028786 Bacteria 33010
41 Ga0307515_10002351 3300028794 Bacteria 41291
42 Ga0307515_10092207 3300028794 Bacteria 3773
43 Ga0307515_10124486 3300028794 Bacteria 2892
44 Ga0268256_1055904 3300030500 Bacteria 811
45 Ga0307511_10046473 3300030521 Bacteria 3570
46 Ga0307511_10153098 3300030521 Bacteria 1317
47 Ga0307512_10007403 3300030522 Bacteria 10896
48 Ga0307512_10030698 3300030522 Bacteria 4669
49 Ga0307512_10133821 3300030522 Bacteria 1544
50 Ga0307513_10004892 3300031456 Bacteria 17779
51 Ga0307513_10117168 3300031456 Bacteria 2641
52 Ga0307509_10007954 3300031507 Bacteria 13674
53 Ga0307509_10042793 3300031507 Bacteria 4904
54 Ga0307509_10481014 3300031507 Bacteria 930
55 Ga0307508_10008175 3300031616 Bacteria 9700
56 Ga0307508_10096237 3300031616 Bacteria 2551
57 Ga0307508_10102248 3300031616 Bacteria 2462
58 Ga0307514_10022404 3300031649 Bacteria 5133
59 Ga0307514_10106836 3300031649 Bacteria 1995
60 Ga0265314_10022779 3300031711 Bacteria 4793
61 Ga0307516_10002293 3300031730 Bacteria 25803
62 Ga0307518_10045582 3300031838 Bacteria 3187
63 Ga0307518_10129996 3300031838 Bacteria 1771
64 Ga0307409_101429562 3300031995 Bacteria 718
65 Ga0307416_101976055 3300032002 Bacteria 686
66 Ga0307411_11136131 3300032005 Bacteria 706
67 Ga0307507_10007349 3300033179 Bacteria 16099
68 Ga0307510_10060138 3300033180 Bacteria 3913
69 Ga0395900_0031240 3300037418 Bacteria 5470
70 Ga0395898_0000852 3300037466 Bacteria 50067
71 Ga0395898_0008673 3300037466 Bacteria 10724
72 Ga0395898_0259724 3300037466 Bacteria 1657
73 Ga0395905_1202821 3300037471 Bacteria 661
74 Ga0436361_0195040 3300039447 Bacteria 22732
75 Ga0436361_0199322 3300039447 Bacteria 7066
76 Ga0436361_0593308 3300039447 Bacteria 3348
77 Ga0436361_0828895 3300039447 Bacteria 5445
78 Ga0436361_1089962 3300039447 Bacteria 8381
79 Ga0439436_0003269 3300041404 Bacteria 4915
80 Ga0439439_0028275 3300041406 Bacteria 1419
81 Ga0451837_0842755 3300041494 Bacteria 3354
82 Ga0451841_0261787 3300041498 Bacteria 1207
83 Ga0451853_0421653 3300041512 Bacteria 3335
84 Ga0451853_1029756 3300041512 Bacteria 3422
85 Ga0451853_2271909 3300041512 Bacteria 2474
86 Ga0439433_0001683 3300041999 Bacteria 4611
87 Ga0439442_004199 3300042002 Bacteria 2854
88 Ga0439449_0002546 3300042007 Bacteria 7121
89 Ga0439449_0006679 3300042007 Bacteria 4407
90 Ga0439449_0118095 3300042007 Bacteria 984
91 Ga0439457_002333 3300042014 Bacteria 5451
92 Ga0450896_001340 3300042133 Bacteria 2996
93 Ga0450898_000319 3300042134 Bacteria 5434
94 Ga0450899_002874 3300042135 Bacteria 1864
95 Ga0450903_000086 3300042138 Bacteria 19200
96 Ga0450906_000951 3300042145 Bacteria 6332
97 Ga0439458_0004951 3300042157 Bacteria 3019
98 Ga0439458_0017543 3300042157 Bacteria 1636
99 Ga0466969_0015790 3300044656 Bacteria 3958
100 Ga0466969_0084034 3300044656 Bacteria 1515
101 Ga0466972_0005381 3300044658 Bacteria 6413
102 Ga0466972_0060471 3300044658 Bacteria 1817
103 Ga0466972_0124446 3300044658 Bacteria 1215
104 Ga0466972_0202736 3300044658 Bacteria 929
105 Ga0466965_0004670 3300044683 Bacteria 6108
106 Ga0466965_0105695 3300044683 Bacteria 1443
107 Ga0466966_0002786 3300044684 Bacteria 11489
108 Ga0466966_0003947 3300044684 Bacteria 9799
109 Ga0466966_0026877 3300044684 Bacteria 3753
110 Ga0466961_0004565 3300044693 Bacteria 8686
111 Ga0466961_0009340 3300044693 Bacteria 6247
112 Ga0466961_0292634 3300044693 Bacteria 996
113 Ga0466963_0000275 3300044694 Bacteria 22896
114 Ga0466963_0055518 3300044694 Bacteria 2634
115 Ga0466963_0133573 3300044694 Bacteria 1716
116 Ga0466964_0016985 3300044706 Bacteria 2783
117 Ga0466971_0094363 3300044719 Bacteria 1371
118 Ga0466968_0160030 3300044735 Bacteria 1039
119 Ga0466970_0001447 3300044765 Bacteria 11492
120 Ga0466970_0003142 3300044765 Bacteria 8025
121 Ga0466957_0000049 3300044842 Bacteria 44603
122 Ga0466957_0112734 3300044842 Bacteria 1726
123 Ga0466960_0099343 3300044901 Bacteria 1496
124 Ga0466960_0237147 3300044901 Unclassified 1009
125 Ga0466959_0000275 3300045049 Bacteria 31466
126 Ga0466959_0003285 3300045049 Bacteria 10543
127 Ga0466959_0027774 3300045049 Bacteria 4197
128 Ga0466958_0000512 3300045836 Bacteria 16251
129 Ga0466967_0001836 3300045976 Bacteria 12769
130 Ga0466967_0004405 3300045976 Bacteria 9487
131 Ga0466967_0198414 3300045976 Bacteria 1899
132 Ga0495617_033083 3300046452 Bacteria 1735
133 Ga0495617_148738 3300046452 Bacteria 745
134 Ga0495592_0060484 3300046454 Bacteria 2786
135 Ga0495603_0000171 3300046455 Bacteria 32974
136 Ga0495603_0002095 3300046455 Bacteria 11731
137 Ga0495603_0003644 3300046455 Bacteria 9168
138 Ga0495603_0004577 3300046455 Bacteria 8255
139 Ga0495603_0120271 3300046455 Bacteria 1530
140 Ga0495603_0181356 3300046455 Bacteria 1218
141 Ga0495629_0005220 3300046459 Bacteria 9725
142 Ga0495629_0005897 3300046459 Bacteria 9130
143 Ga0495629_0008198 3300046459 Bacteria 7684
144 Ga0495629_0016458 3300046459 Bacteria 5308
145 Ga0495629_0043276 3300046459 Bacteria 3162
146 Ga0495629_0610995 3300046459 Bacteria 729
147 Ga0495638_0114053 3300046460 Bacteria 1603
148 Ga0495638_0193051 3300046460 Bacteria 1154
149 Ga0495650_0000297 3300046471 Bacteria 90619
150 Ga0495605_0002919 3300046474 Bacteria 10367
151 Ga0495662_0137381 3300046476 Bacteria 1202
152 Ga0495664_0166393 3300046477 Bacteria 1338
153 Ga0495584_0282176 3300046491 Bacteria 844
154 Ga0495594_0000903 3300046499 Bacteria 15363
155 Ga0495594_0083244 3300046499 Bacteria 1788
156 Ga0495594_0167629 3300046499 Bacteria 1249
157 Ga0495596_0110617 3300046500 Bacteria 1067
158 Ga0495596_0333624 3300046500 Bacteria 590
159 Ga0495607_0012909 3300046501 Bacteria 5494
160 Ga0495607_0061974 3300046501 Bacteria 2123
161 Ga0495583_0040356 3300046506 Bacteria 2193
162 Ga0495583_0101235 3300046506 Bacteria 1229
163 Ga0495583_0290567 3300046506 Bacteria 651
164 Ga0495606_0002720 3300046507 Bacteria 19937
165 Ga0495616_0003149 3300046513 Bacteria 10652
166 Ga0495618_0073168 3300046514 Bacteria 2181
167 Ga0495620_0009730 3300046515 Bacteria 5102
168 Ga0495628_0040419 3300046516 Bacteria 3726
169 Ga0495630_0210287 3300046517 Bacteria 1485
170 Ga0495630_0419093 3300046517 Bacteria 1026
171 Ga0495631_0006668 3300046518 Bacteria 5936
172 Ga0495632_0069486 3300046519 Bacteria 1696
173 Ga0495643_0002521 3300046522 Bacteria 14371
174 Ga0495648_0075629 3300046524 Bacteria 1936
175 Ga0495642_0028272 3300046528 Bacteria 2234
176 Ga0495642_0428544 3300046528 Bacteria 584
177 Ga0495640_0013757 3300046533 Bacteria 6149
178 Ga0495609_0288743 3300046538 Bacteria 670
179 Ga0495597_0070294 3300046542 Bacteria 1509
180 Ga0495622_0000326 3300046557 Bacteria 35065
181 Ga0495622_0045079 3300046557 Bacteria 2049
182 Ga0495633_0101790 3300046558 Bacteria 1333
183 Ga0495633_0207333 3300046558 Bacteria 899
184 Ga0495667_0070936 3300046559 Bacteria 2273
185 Ga0495668_0079123 3300046616 Bacteria 1804
186 Ga0495634_0210338 3300046642 Bacteria 1204
187 Ga0495611_0033997 3300046648 Bacteria 2252
188 Ga0495611_0187988 3300046648 Bacteria 964
189 Ga0495625_0008003 3300046660 Bacteria 9077
190 Ga0495625_0040018 3300046660 Bacteria 3421
191 Ga0495625_0135185 3300046660 Bacteria 1667
192 Ga0495635_0024312 3300046663 Bacteria 4223
193 Ga0495635_0085811 3300046663 Bacteria 2154
194 Ga0495661_0180039 3300046665 Bacteria 1121
195 Ga0495588_0001993 3300046674 Bacteria 8728
196 Ga0495588_0012453 3300046674 Bacteria 4020
197 Ga0495657_0029965 3300046675 Bacteria 3813
198 Ga0495599_0299567 3300046678 Bacteria 971
199 Ga0495623_0067496 3300046679 Bacteria 2232
200 Ga0495623_0078728 3300046679 Bacteria 2043
201 Ga0495613_0003057 3300046689 Bacteria 12503
202 Ga0495613_0006512 3300046689 Bacteria 8725
203 Ga0495613_0034394 3300046689 Bacteria 3763
204 Ga0495613_0042831 3300046689 Bacteria 3348
205 Ga0495613_0449389 3300046689 Bacteria 873
206 Ga0495624_0219322 3300046690 Bacteria 1153
207 Ga0495670_0095658 3300046691 Bacteria 1524
208 Ga0495671_0007172 3300046692 Bacteria 6377
209 Ga0495649_0038127 3300046694 Bacteria 2638
210 Ga0495649_0083184 3300046694 Bacteria 1710
211 Ga0495649_0083685 3300046694 Bacteria 1704
212 Ga0495589_0019843 3300046794 Bacteria 3439
213 Ga0495589_0313619 3300046794 Bacteria 725
214 Ga0495589_0332782 3300046794 Bacteria 701
215 Ga0495660_0078176 3300046810 Bacteria 1739
216 Ga0495660_0116774 3300046810 Bacteria 1355
217 Ga0495581_0079850 3300047315 Bacteria 1893
218 Ga0495581_0140253 3300047315 Bacteria 1410
219 Ga0495581_0199615 3300047315 Bacteria 1170
220 Ga0495604_0041361 3300047317 Bacteria 3615
221 Ga0495604_0072866 3300047317 Bacteria 2594
222 Ga0495636_0030902 3300047318 Bacteria 2192
223 Ga0495676_0005591 3300047321 Bacteria 11537
224 Ga0495676_0023134 3300047321 Bacteria 5397
225 Ga0495676_0556207 3300047321 Bacteria 749
226 Ga0495680_0021804 3300047322 Bacteria 5353
227 Ga0495683_0039527 3300047323 Bacteria 2384
228 Ga0495687_000825 3300047443 Bacteria 33158
229 Ga0495687_035513 3300047443 Bacteria 2240
230 Ga0495687_090674 3300047443 Bacteria 1171
231 Ga0495675_0014454 3300047444 Bacteria 4988
232 Ga0495675_0021021 3300047444 Bacteria 4155
233 Ga0495677_0292409 3300047445 Bacteria 640
234 Ga0495677_0325119 3300047445 Bacteria 606
235 Ga0495685_001682 3300047447 Bacteria 6823
236 Ga0495685_022257 3300047447 Bacteria 2181
237 Ga0495685_022463 3300047447 Bacteria 2171
238 Ga0495685_033236 3300047447 Bacteria 1772
239 Ga0495685_060499 3300047447 Bacteria 1277
240 Ga0495681_0003781 3300047470 Bacteria 10497
241 Ga0495681_0064759 3300047470 Bacteria 1673
242 Ga0495686_0032273 3300047472 Bacteria 3390
243 Ga0495614_0012502 3300048089 Bacteria 3724
244 Ga0495614_0048816 3300048089 Bacteria 1814
245 Ga0495614_0060826 3300048089 Bacteria 1622
246 Ga0495614_0288078 3300048089 Bacteria 757
247 Ga0495615_0120711 3300048090 Bacteria 758
248 Ga0496108_0365839 3300048911 Bacteria 1259
249 Ga0496109_0283522 3300048912 Bacteria 1561
250 Ga0496120_0241288 3300048923 Bacteria 853
251 Ga0495678_109055 3300049459 Bacteria 947
252 Ga0501031_0011227 3300049568 Bacteria 5839
253 Ga0501032_0006367 3300049569 Bacteria 8702
254 Ga0501032_0215593 3300049569 Bacteria 1250
255 Ga0501033_0007059 3300049570 Bacteria 8769
256 Ga0501033_0025339 3300049570 Bacteria 4467
257 Ga0501034_0021813 3300049571 Bacteria 6525
258 Ga0501034_0166268 3300049571 Bacteria 2174
259 Ga0501034_0352788 3300049571 Bacteria 1399
260 Ga0501037_0002658 3300049573 Bacteria 12879
261 Ga0501037_0057802 3300049573 Bacteria 2831
262 Ga0501037_0500971 3300049573 Bacteria 824
263 Ga0501038_0006729 3300049574 Bacteria 10620
264 Ga0501038_0046492 3300049574 Bacteria 3763
265 Ga0501039_0123097 3300049575 Bacteria 2033
266 Ga0501042_0079813 3300049578 Bacteria 2344
267 Ga0501043_0012539 3300049579 Bacteria 6628
268 Ga0501046_0021827 3300049580 Bacteria 5277
269 Ga0501046_0047175 3300049580 Bacteria 3416
270 Ga0501047_0033022 3300049581 Bacteria 4996
271 Ga0501047_0047136 3300049581 Bacteria 4164
272 Ga0501047_0047769 3300049581 Bacteria 4134
273 Ga0501048_0034432 3300049582 Bacteria 3653
274 Ga0501048_0389550 3300049582 Bacteria 995
275 Ga0501070_0591939 3300049586 Bacteria 885
276 Ga0501070_0958655 3300049586 Bacteria 665
277 Ga0501073_0062793 3300049589 Bacteria 2591
278 Ga0501257_071704 3300049686 Bacteria 886
279 Ga0501080_0020913 3300049742 Bacteria 6056
280 Ga0501035_0041079 3300049822 Bacteria 4177
281 Ga0501035_0524844 3300049822 Bacteria 972
282 Ga0501035_0693065 3300049822 Bacteria 822
283 Ga0501044_0034155 3300049823 Bacteria 5337
284 Ga0501044_0069548 3300049823 Bacteria 3583
285 Ga0501044_0118713 3300049823 Bacteria 2647
286 Ga0501044_0261901 3300049823 Bacteria 1667
287 nmdc:mga03n38_172791_c1 3300050490 Bacteria 1102
288 nmdc:mga03n38_18661_c1 3300050490 Bacteria 2742
289 nmdc:mga03n38_195230_c1 3300050490 Bacteria 1045
290 nmdc:mga0yw44_234756_c1 3300050492 Bacteria 1218
291 nmdc:mga06z11_7138_c1 3300050494 Bacteria 4586
292 nmdc:mga04h51_25843_c1 3300050495 Bacteria 1811
293 nmdc:mga07m45_129765_c1 3300050496 Bacteria 1458
294 Ga0500644_0331504 3300053088 Bacteria 656
295 Ga0500560_231359 3300053107 Bacteria 584
296 Ga0500600_0063841 3300053149 Bacteria 2043
297 Ga0466962_0000081 3300061719 Bacteria 38408
298 Ga0466962_0069395 3300061719 Bacteria 1683
299 Ga0466962_0410177 3300061719 Bacteria 679
300 2862513744 2862507626 Bacteria 9425308
301 2547408763 2547132111 Bacteria 8013147
302 2585305903 2582581313 Bacteria 10042643
303 2585315165 2582581314 Bacteria 11452267
304 2616693541 2616644814 Bacteria 11555299
305 2616906245 2616644941 Bacteria 8510691
306 2643766115 2643221548 Bacteria 8053412
307 2643947255 2643221587 Bacteria 7586415
308 2644270197 2643221647 Bacteria 10741251
309 2644386382 2643221670 Bacteria 6497041
310 2644433274 2643221677 Bacteria 7584031
311 2644441907 2643221678 Bacteria 9540101
312 2644463572 2643221682 Bacteria 6743283
313 2644630664 2643221714 Bacteria 9015452
314 2784586214 2784132148 Bacteria 8627943
315 2785366329 2784746768 Bacteria 10036182
316 2786667310 2786546132 Bacteria 10419719
317 2808846958 2808606359 Bacteria 9866990
318 2808917677 2808606375 Bacteria 9466072
319 2809229610 2808606448 Bacteria 8656184
320 2811845604 2808606982 Bacteria 7791042
321 2812361369 2811994879 Bacteria 9313447
322 2812477311 2811994917 Bacteria 7761064
323 2819696068 2818991463 Bacteria 7948711
324 2834643092 2834641062 Bacteria 5559922
325 2852642631 2852635781 Bacteria 8251373
326 2862180986 2862178590 Bacteria 8583590
327 2862282477 2862281513 Bacteria 9621493
328 2862384921 2862382967 Bacteria 10317375
329 2862580575 2862574272 Bacteria 10567477
330 2867436341 2867428634 Bacteria 9590268
331 2867475430 2867475112 Bacteria 6909112
332 2873157998 2873151551 Bacteria 8625867
333 2877684190 2877676314 Bacteria 9512378
334 2912723491 2912715099 Bacteria 9460473
335 2912726729 2912723979 Bacteria 8557534
336 2918501927 2918501144 Bacteria 8668083
337 2919470144 2919468124 Bacteria 9133025
338 2935391979 2935390628 Bacteria 7043367
339 2946064715 2946064051 Bacteria 8957905
340 2946073090 2946072368 Bacteria 8999607
341 2947224682 2947224130 Bacteria 9938529
342 2954003458 2954002825 Bacteria 9173742
343 2954389502 2954380949 Bacteria 10050426
344 2954682398 2954673503 Bacteria 9685905
345 2954690526 2954682443 Bacteria 9862841
346 2954700280 2954691527 Bacteria 10720516
347 2954701949 2954701450 Bacteria 10834262
348 2954719044 2954711539 Bacteria 10867210
349 2954729014 2954721474 Bacteria 10456478
350 2954732797 2954731030 Bacteria 10243860
351 2954747913 2954740390 Bacteria 10229294
352 2954751675 2954749733 Bacteria 10366972
353 2954767039 2954759201 Bacteria 9358192
354 2966599278 2966598605 Bacteria 7676064
355 2990065684 2990059506 Bacteria 9321252
356 2995467565 2995463766 Bacteria 8577691
357 2997456116 2997451912 Bacteria 8492419
358 3006394731 3006393351 Bacteria 6615579
359 3006498364 3006493962 Bacteria 8825450
360 8003405352 8003400568 Bacteria 5535898
361 8008560470 8008558824 Bacteria 10610750
362 8008581334 8008574985 Bacteria 7815457
363 8023629928 8023623736 Bacteria 8593882
364 8025536300 8025530807 Bacteria 8495698
365 8048413584 8048406513 Bacteria 8936924
366 8056830915 8056829672 Bacteria 9045328
367 JGI25153J46596_10040392
368 rootH1_10020419
369 rootH1_10046467
370 rootH2_10023985
371 rootL2_10013953
372 rootL2_10013954
373 Ga0070698_100299117
374 Ga0068854_101190615
375 Ga0068856_100410538
376 Ga0081455_10045369
377 Ga0075365_10130984
378 Ga0075368_10072146
379 Ga0075363_100007390
380 Ga0075370_10197610
381 Ga0099826_10169836
382 Ga0105243_10474977
383 Ga0105238_10620169
384 Ga0105246_10107154
385 Ga0182008_10001342
386 Ga0182007_10000651
387 Ga0183367_1003
388 Ga0213872_10000065
389 Ga0213872_10017313
390 Ga0213872_10044812
391 Ga0213872_10088315
392 Ga0209758_1004407
393 Ga0207426_1000824
394 Ga0207426_1004601
395 Ga0207426_1061143
396 Ga0207647_10017418
397 Ga0207684_10876390
398 Ga0207694_10387329
399 Ga0207640_10178531
400 Ga0207639_10044869
401 Ga0207702_10962980
402 Ga0209371_1049598
403 Ga0209282_1172274
404 Ga0209813_10057894
405 Ga0268266_11342072
406 Ga0307517_10002021
407 Ga0307515_10002351
408 Ga0307515_10092207
409 Ga0307515_10124486
410 Ga0268256_1055904
411 Ga0307511_10046473
412 Ga0307511_10153098
413 Ga0307512_10007403
414 Ga0307512_10030698
415 Ga0307512_10133821
416 Ga0307513_10004892
417 Ga0307513_10117168
418 Ga0307509_10007954
419 Ga0307509_10042793
420 Ga0307509_10481014
421 Ga0307508_10008175
422 Ga0307508_10096237
423 Ga0307508_10102248
424 Ga0307514_10022404
425 Ga0307514_10106836
426 Ga0265314_10022779
427 Ga0307516_10002293
428 Ga0307518_10045582
429 Ga0307518_10129996
430 Ga0307409_101429562
431 Ga0307416_101976055
432 Ga0307411_11136131
433 Ga0307507_10007349
434 Ga0307510_10060138
435 Ga0395900_0031240
436 Ga0395898_0000852
437 Ga0395898_0008673
438 Ga0395898_0259724
439 Ga0395905_1202821
440 Ga0436361_0195040
441 Ga0436361_0199322
442 Ga0436361_0593308
443 Ga0436361_0828895
444 Ga0436361_1089962
445 Ga0439436_0003269
446 Ga0439439_0028275
447 Ga0451837_0842755
448 Ga0451841_0261787
449 Ga0451853_0421653
450 Ga0451853_1029756
451 Ga0451853_2271909
452 Ga0439433_0001683
453 Ga0439442_004199
454 Ga0439449_0002546
455 Ga0439449_0006679
456 Ga0439449_0118095
457 Ga0439457_002333
458 Ga0450896_001340
459 Ga0450898_000319
460 Ga0450899_002874
461 Ga0450903_000086
462 Ga0450906_000951
463 Ga0439458_0004951
464 Ga0439458_0017543
465 Ga0466969_0015790
466 Ga0466969_0084034
467 Ga0466972_0005381
468 Ga0466972_0060471
469 Ga0466972_0124446
470 Ga0466972_0202736
471 Ga0466965_0004670
472 Ga0466965_0105695
473 Ga0466966_0002786
474 Ga0466966_0003947
475 Ga0466966_0026877
476 Ga0466961_0004565
477 Ga0466961_0009340
478 Ga0466961_0292634
479 Ga0466963_0000275
480 Ga0466963_0055518
481 Ga0466963_0133573
482 Ga0466964_0016985
483 Ga0466971_0094363
484 Ga0466968_0160030
485 Ga0466970_0001447
486 Ga0466970_0003142
487 Ga0466957_0000049
488 Ga0466957_0112734
489 Ga0466960_0099343
490 Ga0466960_0237147
491 Ga0466959_0000275
492 Ga0466959_0003285
493 Ga0466959_0027774
494 Ga0466958_0000512
495 Ga0466967_0001836
496 Ga0466967_0004405
497 Ga0466967_0198414
498 Ga0495617_033083
499 Ga0495617_148738
500 Ga0495592_0060484
501 Ga0495603_0000171
502 Ga0495603_0002095
503 Ga0495603_0003644
504 Ga0495603_0004577
505 Ga0495603_0120271
506 Ga0495603_0181356
507 Ga0495629_0005220
508 Ga0495629_0005897
509 Ga0495629_0008198
510 Ga0495629_0016458
511 Ga0495629_0043276
512 Ga0495629_0610995
513 Ga0495638_0114053
514 Ga0495638_0193051
515 Ga0495650_0000297
516 Ga0495605_0002919
517 Ga0495662_0137381
518 Ga0495664_0166393
519 Ga0495584_0282176
520 Ga0495594_0000903
521 Ga0495594_0083244
522 Ga0495594_0167629
523 Ga0495596_0110617
524 Ga0495596_0333624
525 Ga0495607_0012909
526 Ga0495607_0061974
527 Ga0495583_0040356
528 Ga0495583_0101235
529 Ga0495583_0290567
530 Ga0495606_0002720
531 Ga0495616_0003149
532 Ga0495618_0073168
533 Ga0495620_0009730
534 Ga0495628_0040419
535 Ga0495630_0210287
536 Ga0495630_0419093
537 Ga0495631_0006668
538 Ga0495632_0069486
539 Ga0495643_0002521
540 Ga0495648_0075629
541 Ga0495642_0028272
542 Ga0495642_0428544
543 Ga0495640_0013757
544 Ga0495609_0288743
545 Ga0495597_0070294
546 Ga0495622_0000326
547 Ga0495622_0045079
548 Ga0495633_0101790
549 Ga0495633_0207333
550 Ga0495667_0070936
551 Ga0495668_0079123
552 Ga0495634_0210338
553 Ga0495611_0033997
554 Ga0495611_0187988
555 Ga0495625_0008003
556 Ga0495625_0040018
557 Ga0495625_0135185
558 Ga0495635_0024312
559 Ga0495635_0085811
560 Ga0495661_0180039
561 Ga0495588_0001993
562 Ga0495588_0012453
563 Ga0495657_0029965
564 Ga0495599_0299567
565 Ga0495623_0067496
566 Ga0495623_0078728
567 Ga0495613_0003057
568 Ga0495613_0006512
569 Ga0495613_0034394
570 Ga0495613_0042831
571 Ga0495613_0449389
572 Ga0495624_0219322
573 Ga0495670_0095658
574 Ga0495671_0007172
575 Ga0495649_0038127
576 Ga0495649_0083184
577 Ga0495649_0083685
578 Ga0495589_0019843
579 Ga0495589_0313619
580 Ga0495589_0332782
581 Ga0495660_0078176
582 Ga0495660_0116774
583 Ga0495581_0079850
584 Ga0495581_0140253
585 Ga0495581_0199615
586 Ga0495604_0041361
587 Ga0495604_0072866
588 Ga0495636_0030902
589 Ga0495676_0005591
590 Ga0495676_0023134
591 Ga0495676_0556207
592 Ga0495680_0021804
593 Ga0495683_0039527
594 Ga0495687_000825
595 Ga0495687_035513
596 Ga0495687_090674
597 Ga0495675_0014454
598 Ga0495675_0021021
599 Ga0495677_0292409
600 Ga0495677_0325119
601 Ga0495685_001682
602 Ga0495685_022257
603 Ga0495685_022463
604 Ga0495685_033236
605 Ga0495685_060499
606 Ga0495681_0003781
607 Ga0495681_0064759
608 Ga0495686_0032273
609 Ga0495614_0012502
610 Ga0495614_0048816
611 Ga0495614_0060826
612 Ga0495614_0288078
613 Ga0495615_0120711
614 Ga0496108_0365839
615 Ga0496109_0283522
616 Ga0496120_0241288
617 Ga0495678_109055
618 Ga0501031_0011227
619 Ga0501032_0006367
620 Ga0501032_0215593
621 Ga0501033_0007059
622 Ga0501033_0025339
623 Ga0501034_0021813
624 Ga0501034_0166268
625 Ga0501034_0352788
626 Ga0501037_0002658
627 Ga0501037_0057802
628 Ga0501037_0500971
629 Ga0501038_0006729
630 Ga0501038_0046492
631 Ga0501039_0123097
632 Ga0501042_0079813
633 Ga0501043_0012539
634 Ga0501046_0021827
635 Ga0501046_0047175
636 Ga0501047_0033022
637 Ga0501047_0047136
638 Ga0501047_0047769
639 Ga0501048_0034432
640 Ga0501048_0389550
641 Ga0501070_0591939
642 Ga0501070_0958655
643 Ga0501073_0062793
644 Ga0501257_071704
645 Ga0501080_0020913
646 Ga0501035_0041079
647 Ga0501035_0524844
648 Ga0501035_0693065
649 Ga0501044_0034155
650 Ga0501044_0069548
651 Ga0501044_0118713
652 Ga0501044_0261901
653 nmdc:mga03n38_172791_c1
654 nmdc:mga03n38_18661_c1
655 nmdc:mga03n38_195230_c1
656 nmdc:mga0yw44_234756_c1
657 nmdc:mga06z11_7138_c1
658 nmdc:mga04h51_25843_c1
659 nmdc:mga07m45_129765_c1
660 Ga0500644_0331504
661 Ga0500560_231359
662 Ga0500600_0063841
663 Ga0466962_0000081
664 Ga0466962_0069395
665 Ga0466962_0410177
666 2862513744
667 2547408763
668 2585305903
669 2585315165
670 2616693541
671 2616906245
672 2643766115
673 2643947255
674 2644270197
675 2644386382
676 2644433274
677 2644441907
678 2644463572
679 2644630664
680 2784586214
681 2785366329
682 2786667310
683 2808846958
684 2808917677
685 2809229610
686 2811845604
687 2812361369
688 2812477311
689 2819696068
690 2834643092
691 2852642631
692 2862180986
693 2862282477
694 2862384921
695 2862580575
696 2867436341
697 2867475430
698 2873157998
699 2877684190
700 2912723491
701 2912726729
702 2918501927
703 2919470144
704 2935391979
705 2946064715
706 2946073090
707 2947224682
708 2954003458
709 2954389502
710 2954682398
711 2954690526
712 2954700280
713 2954701949
714 2954719044
715 2954729014
716 2954732797
717 2954747913
718 2954751675
719 2954767039
720 2966599278
721 2990065684
722 2995467565
723 2997456116
724 3006394731
725 3006498364
726 8003405352
727 8008560470
728 8008581334
729 8023629928
730 8025536300
731 8048413584
732 8056830915

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03551

PadR

Transcriptional regulator PadR-like family

3

77

0.97

PF10400

Vir_act_alpha_C

Virulence activator alpha C-term

88

171

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
1xma-assembly1.cif.gz_B-2 structure of a transcriptional regulator from clostridium thermocellum cth-833 0.8789 3 83
3l9f-assembly2.cif.gz_C the crystal structure of smu.1604c from streptococcus mutans ua159 0.8693 1 172
1xma-assembly1.cif.gz_A structure of a transcriptional regulator from clostridium thermocellum cth-833 0.8655 4 83
5h20-assembly1.cif.gz_A-2 x-ray structure of padr-like transcription factor from bacteroid fragilis 0.864 3 84
3l9f-assembly2.cif.gz_C the crystal structure of smu.1604c from streptococcus mutans ua159 0.8599 1 172
ID Description Score Start End Superfamily
1yg2A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9375 2 89 1.10.10.10
af_O50432_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9355 1 88 1.10.10.10
1yg2A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9264 2 89 1.10.10.10
af_O50432_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9254 1 88 1.10.10.10
5x13A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8917 3 91 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7Y7HDT6-F1-model_v4 deleted 0.9525 1 178
AF-A0A7V9YU51-F1-model_v4 deleted 0.9473 1 176
AF-A0A7Y7HDT6-F1-model_v4 deleted 0.9421 1 178
AF-A0A7K2RYW6-F1-model_v4 deleted 0.9386 1 175
AF-A0A7Z0EN40-F1-model_v4 DNA-binding PadR family transcriptional regulator 0.9385 1 176 GO:0003677

Map