F421017

General Info

Members Datasets Scaffolds Average Seq Length
357 244 714 488

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2599185352|2600194634
Length 538
Sequence NRWLILAIVSSALLLIVVDMTVLYTALPRLTHDLGASASEKLWIVNAYALVVAGLLPGLGTLGDRLGHKKPFIVGLAVFGVASLIAAYAPTPAILIGGRVLLAVGAALMMPATLSIIRLTFTDERERALAIGVWAAIASGGAAIGPVLGGFLLEYFWWGSVFLINVPIVAIALLLGLGVLPNTSGNPKHPWDALGSFQIMVGLVGLAYAVKETSKREPSLEAGLAAAVIGAIALILFVRRQRRSPHPLIDFGLFRNAAFSSGVAAALVASASIVGIELVLSQQLQLVDGLSPLQAGLFILPIPLAAFVAGPLTGTLLPRLGAEVVLRSGLILAALGLGGYLLTHEAGALIQIVTLVVLGLGIGASMTAASSAIMLNAPPERAGMAASIEEVSFELGGAIGIAVLGTVMSVVYTAFLVLPEGAAISPMARDSLDEALLLAEKLPADVAGELVTRARLAFEQAFTAVVIVATAMLFVTGAAIWRVAAALRRRNPVRQATTENNRRHPPAVSATPPRIARSPRPSPGSGHGGEPRRGRNPA

Samples

Sample ID Description Type Environment
1 2124908027 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v1 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
4 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
5 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
6 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
7 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
8 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
9 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
10 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
11 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
12 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
13 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
14 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
15 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
16 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
17 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
18 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
19 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
20 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
21 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
22 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
25 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
28 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
29 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
30 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
31 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
32 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
33 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
34 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
35 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
36 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
37 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
38 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
39 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
40 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
41 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
42 3300013249 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
45 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
46 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
47 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
48 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
49 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
50 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
51 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
52 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
53 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
58 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
59 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
61 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
63 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
66 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
67 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
81 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
82 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
83 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
84 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
85 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
86 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
87 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
88 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
89 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
90 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
91 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
92 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
93 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
94 3300044666 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1E Metagenome Unclassified
95 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
96 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
97 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
98 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
99 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
100 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
101 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
102 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
103 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
104 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
105 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
106 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
107 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
108 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
109 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
110 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
111 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
112 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
113 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
114 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
115 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
116 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
117 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
118 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
119 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
120 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
121 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
122 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
123 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
124 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
125 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
126 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
127 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
128 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
129 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
130 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
131 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
132 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
133 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
134 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
135 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
136 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
137 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
138 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
139 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
140 2506520007 Serratia plymuthica AS9 Isolate Rhizosphere
141 2506520008 Serratia plymuthica AS12 Isolate Unclassified
142 2508501071 Serratia proteamaculans S4 Isolate Rhizosphere
143 2537561728 Pectobacterium wasabiae CFBP 3304 Isolate Rhizoplane
144 2554235132 Pseudomonas aeruginosa PGPR2 Isolate Unclassified
145 2599185214 Variovorax sp. NFACC26 Isolate Rhizoplane
146 2599185226 Variovorax sp. NFACC27 Isolate Rhizoplane
147 2599185227 Variovorax sp. NFACC28 Isolate Rhizoplane
148 2599185229 Variovorax sp. NFACC29 Isolate Endosphere
149 2599185292 Achromobacter sp. NFACC18-2 Isolate Rhizoplane
150 2599185307 Pseudomonas sp. NFACC02 Isolate Rhizoplane
151 2600255292 Janthinobacterium lividum NFR18 Isolate Rhizoplane
152 2606217733 Pseudomonas aeruginosa NFHH01 Isolate Rhizoplane
153 2619619299 Pseudomonas veronii R4 Genome sequencing Isolate Unclassified
154 2643221557 Ensifer sp. Root558 Isolate Unclassified
155 2643221569 Achromobacter sp. Root565 Isolate Unclassified
156 2643221594 Achromobacter sp. Root170 Isolate Unclassified
157 2643221610 Ensifer sp. Root74 Isolate Unclassified
158 2643221618 Ensifer sp. Root231 Isolate Unclassified
159 2643221621 Achromobacter sp. Root83 Isolate Unclassified
160 2643221626 Ensifer sp. Root31 Isolate Unclassified
161 2643221633 Pseudomonas sp. Root329 Isolate Unclassified
162 2643221655 Ensifer sp. Root1252 Isolate Unclassified
163 2643221659 Ensifer sp. Root127 Isolate Unclassified
164 2643221668 Ensifer sp. Root423 Isolate Unclassified
165 2643221675 Ensifer sp. Root1298 Isolate Unclassified
166 2643221680 Ensifer sp. Root1312 Isolate Unclassified
167 2643221698 Ensifer sp. Root142 Isolate Unclassified
168 2643221712 Ensifer sp. Root258 Isolate Unclassified
169 2643221723 Ensifer sp. Root278 Isolate Unclassified
170 2643221726 Ensifer sp. Root954 Isolate Unclassified
171 2654587920 Serratia plymuthica HRO-C48 Isolate Rhizosphere
172 2667528173 Rahnella sp. NFIX50 Isolate Rhizoplane
173 2671180115 Cedecea sp. NFIX57 Isolate Rhizoplane
174 2687453601 Serratia plymuthica 3Rp8 Isolate Unclassified
175 2721755523 Delftia sp. HK171 Isolate Unclassified
176 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
177 2738541265 Pseudomonas sp. GV077 Isolate Unclassified
178 2738541282 Pseudomonas sp. GV058 Isolate Unclassified
179 2738541303 Pseudomonas sp. GV105 Isolate Unclassified
180 2751185800 Brucella pituitosa AA2 Isolate Unclassified
181 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
182 2772190666 Serratia surfactantfaciens YD25 Isolate Unclassified
183 2806310673 Serratia quinivorans NCTC 13189 Isolate Rhizosphere
184 2808606382 Pseudomonas sp. SJZ080 Isolate Rhizosphere
185 2808606385 Pseudomonas sp. SJZ103 Isolate Rhizosphere
186 2808606388 Pseudomonas sp. SJZ094 Isolate Rhizosphere
187 2808606395 Achromobacter sp. SLBN-14 Isolate Unclassified
188 2816332298 Pseudomonas veronii R02 Isolate Rhizosphere
189 2844163670 Ensifer sp. 1H6 Isolate Unclassified
190 2846540461 Photorhabdus luminescens HIM3 Isolate Rhizosphere
191 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
192 2852612431 Pseudomonas sp. SJZ073 Isolate Rhizosphere
193 2852667396 Pseudomonas sp. JAI120 Isolate Rhizosphere
194 2854911287 Brucella lupini LUP21 Isolate Unclassified
195 2855195626 Pectobacterium atrosepticum SS26 Isolate Stem Tuber
196 2857537821 Achromobacter sp. R-71975 Isolate Unclassified
197 2857542790 Achromobacter sp. R-72367 Isolate Unclassified
198 2857547612 Janthinobacterium sp. R-74502 Isolate Unclassified
199 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
200 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
201 2858466076 Pectobacterium polaris SS28 Isolate Stem Tuber
202 2858950400 Achromobacter sp. K91 Isolate Unclassified
203 2869551831 Serratia inhibens PRI-2C Isolate Rhizosphere
204 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
205 2871272651 Pectobacterium carotovorum SS96 Isolate Stem Tuber
206 2871282230 Pectobacterium parmentieri SS90 Isolate Stem Tuber
207 2885080285 Janthinobacterium sp. AD80 Isolate Rhizosphere
208 2885198086 Variovorax sp. 679 Isolate Unclassified
209 2885211737 Variovorax sp. 553 Isolate Unclassified
210 2888366609 Serratia sp. NGAS9 Isolate Rhizosphere
211 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
212 2900051742 Pectobacterium zantedeschiae 2M Isolate Stem Tuber
213 2904474040 Rahnella aquatilis 4485 Isolate Rhizosphere
214 2908669403 Pantoea coffeiphila 1480 Isolate Rhizosphere
215 2909042592 Labrys sp. LIt4 Isolate Nodule
216 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
217 2919150387 Rahnella aceris 1817 Isolate Unclassified
218 2919679072 Pseudotabrizicola sp. 4114 Isolate Unclassified
219 2920822456 Ensifer sesbaniae CCBAU 65729 Isolate Unclassified
220 2927143783 Rahnella sp. 2050 Isolate Unclassified
221 2928070936 Variovorax gossypii 1167 Isolate Unclassified
222 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
223 2932406140 Serratia sp. 2723 Isolate Rhizosphere
224 2932410948 Janthinobacterium lividum 2829 Isolate Rhizosphere
225 2932416698 Janthinobacterium lividum 2830 Isolate Rhizosphere
226 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
227 2937967321 Serratia sp. YC16 Isolate Unclassified
228 2939577877 Serratia sp. 509 Isolate Rhizosphere
229 2941479691
230 2941499720 Ensifer sp. 4252 Isolate Rhizosphere
231 2946027586 Pseudomonas sp. W4I3 Isolate Rhizosphere
232 2947233263 Pseudomonas synxantha W2I4 Isolate Rhizosphere
233 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
234 2996310559 Mesorhizobium zhangyense CGMCC 1.15528 Isolate Unclassified
235 2996336353 Mesorhizobium sp. YM1C-6-2 Isolate Unclassified
236 3002141150 Phyllobacterium sp. 628 Isolate Unclassified
237 640427133 Stutzerimonas stutzeri A1501 Isolate Rhizosphere
238 651053060 Stutzerimonas stutzeri CMT.A.9 Isolate Rhizosphere
239 8002392321 Alcaligenes faecalis Mc250 Isolate Rhizosphere
240 8004592986 Serratia sp. S119 Isolate Unclassified
241 8015394850 Serratia sp. PGPR-27 Isolate Rhizosphere
242 8052494512 Pseudomonas putida LD6 Isolate Unclassified
243 8055693939 Hafnia alvei A23BA Isolate Rhizosphere
244 8057473075 Paenibacillus endoradicis T3-5-0-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 70.03
Metatranscriptomes 0
Isolates 29.97

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.25
Nodule 2.24
Rhizoplane 3.92
Rhizosphere 39.22
Stem 0
Stem Tuber 1.4
Unclassified 0.28

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MRS2a_Contig_346 2124908027 Bacteria 6745
2 MRS2a_Contig_7370 2124908027 Bacteria 6953
3 SwRhRL2b_contig_313530 2162886007 Bacteria 6695
4 JGI25162J39368_1000067 3300002737 Bacteria 129813
5 JGI25163J39215_1000114 3300002771 Bacteria 33694
6 JGI25164J39214_1000039 3300002772 Bacteria 129437
7 JGI25159J45721_1000018 3300002987 Bacteria 132603
8 JGI25160J50197_1000009 3300003354 Bacteria 282862
9 JGI25161J50226_1000243 3300003374 Bacteria 32857
10 Ga0055538_1000052 3300003751 Bacteria 129813
11 Ga0055539_1000077 3300003752 Bacteria 129445
12 Ga0055533_1000083 3300003756 Bacteria 129813
13 Ga0055525_1000110 3300003759 Bacteria 129813
14 Ga0055524_1001071 3300003775 Bacteria 16801
15 Ga0055536_1000168 3300003781 Bacteria 54941
16 Ga0055536_1005130 3300003781 Bacteria 6476
17 Ga0055530_10010233 3300003791 Bacteria 3494
18 Ga0055540_1001537 3300003792 Bacteria 13562
19 Ga0055541_1000054 3300003841 Bacteria 129813
20 Ga0055543_1000090 3300004625 Bacteria 79635
21 Ga0065165_1000020 3300005262 Bacteria 265570
22 Ga0065704_10000895 3300005289 Bacteria 11135
23 Ga0065704_10001666 3300005289 Bacteria 11421
24 Ga0070661_100000062 3300005344 Bacteria 85485
25 Ga0070667_100038614 3300005367 Bacteria 4003
26 Ga0070664_100000035 3300005564 Bacteria 81750
27 Ga0081539_10001781 3300005985 Bacteria 34193
28 Ga0075364_10000779 3300006051 Bacteria 16757
29 Ga0075364_10005853 3300006051 Bacteria 7181
30 Ga0075364_10008846 3300006051 Bacteria 6028
31 Ga0075364_10011397 3300006051 Bacteria 5401
32 Ga0075364_10026132 3300006051 Bacteria 3722
33 Ga0075364_10064396 3300006051 Bacteria 2406
34 Ga0070712_100028256 3300006175 Bacteria 3750
35 Ga0075369_10002178 3300006186 Bacteria 6922
36 Ga0079104_1000011 3300006946 Bacteria 359962
37 Ga0079104_1000204 3300006946 Bacteria 82921
38 Ga0105251_10001333 3300009011 Bacteria 21328
39 Ga0105251_10002701 3300009011 Bacteria 13626
40 Ga0105244_10000498 3300009036 Bacteria 35285
41 Ga0105244_10000945 3300009036 Bacteria 24406
42 Ga0105244_10011043 3300009036 Bacteria 5442
43 Ga0105250_10000047 3300009092 Bacteria 124276
44 Ga0105250_10001038 3300009092 Bacteria 15929
45 Ga0105250_10005260 3300009092 Bacteria 5821
46 Ga0105247_10000012 3300009101 Bacteria 292188
47 Ga0105243_10001815 3300009148 Bacteria 18277
48 Ga0105243_10002813 3300009148 Bacteria 14456
49 Ga0105241_10000002 3300009174 Bacteria 869480
50 Ga0105242_10021390 3300009176 Bacteria 5078
51 Ga0105237_10000042 3300009545 Bacteria 181280
52 Ga0105246_10010883 3300011119 Bacteria 5640
53 Ga0157373_10000456 3300013100 Bacteria 32341
54 Ga0157373_10021498 3300013100 Bacteria 4686
55 Ga0157371_10000075 3300013102 Bacteria 162328
56 Ga0157371_10000217 3300013102 Bacteria 83950
57 Ga0157370_10016433 3300013104 Bacteria 7492
58 Ga0157369_10009482 3300013105 Bacteria 11131
59 Ga0157369_10036092 3300013105 Bacteria 5418
60 Ga0171463_1006 3300013249 Bacteria 336402
61 Ga0163162_10007106 3300013306 Bacteria 10863
62 Ga0163162_10043955 3300013306 Bacteria 4473
63 Ga0157375_10002271 3300013308 Bacteria 16644
64 Ga0157375_10032970 3300013308 Bacteria 4917
65 Ga0182006_1000006 3300015261 Bacteria 555811
66 Ga0182006_1006883 3300015261 Bacteria 5243
67 Ga0182007_10000474 3300015262 Bacteria 24209
68 Ga0182005_1000001 3300015265 Bacteria 1014869
69 Ga0183363_1018 3300015690 Bacteria 62625
70 Ga0163161_10000001 3300017792 Bacteria 2041488
71 Ga0163161_10002718 3300017792 Bacteria 12568
72 Ga0163161_10003112 3300017792 Bacteria 11703
73 Ga0163161_10034698 3300017792 Bacteria 3609
74 Ga0163161_10049715 3300017792 Bacteria 3031
75 Ga0213871_10001587 3300021441 Bacteria 3868
76 Ga0209760_100849 3300025207 Bacteria 3978
77 Ga0209436_100707 3300025208 Bacteria 13977
78 Ga0209784_100012 3300025224 Bacteria 535823
79 Ga0209566_100010 3300025225 Bacteria 535823
80 Ga0209674_100023 3300025226 Bacteria 535823
81 Ga0209563_100027 3300025230 Bacteria 535823
82 Ga0207427_100017 3300025231 Bacteria 535823
83 Ga0209437_100029 3300025233 Bacteria 535823
84 Ga0209677_100014 3300025253 Bacteria 535823
85 Ga0209130_1000037 3300025284 Bacteria 284019
86 Ga0209676_1000239 3300025292 Bacteria 117696
87 Ga0209676_1000595 3300025292 Bacteria 53773
88 Ga0209676_1001213 3300025292 Bacteria 27426
89 Ga0209025_1000196 3300025294 Bacteria 147356
90 Ga0209564_1000086 3300025295 Bacteria 251385
91 Ga0209050_1000962 3300025298 Bacteria 37160
92 Ga0209050_1001546 3300025298 Bacteria 24090
93 Ga0209256_1000276 3300025299 Bacteria 89888
94 Ga0209256_1001111 3300025299 Bacteria 30786
95 Ga0207426_1000048 3300025302 Bacteria 409127
96 Ga0209051_1000787 3300025303 Bacteria 33471
97 Ga0209257_1002569 3300025304 Bacteria 17684
98 Ga0209257_1021280 3300025304 Bacteria 2362
99 Ga0207696_1000001 3300025711 Bacteria 2579611
100 Ga0207696_1000017 3300025711 Bacteria 491130
101 Ga0207696_1000874 3300025711 Bacteria 18759
102 Ga0207655_1000070 3300025728 Bacteria 239196
103 Ga0207655_1000110 3300025728 Bacteria 171137
104 Ga0207655_1001135 3300025728 Bacteria 25953
105 Ga0207655_1008104 3300025728 Bacteria 6720
106 Ga0207655_1045955 3300025728 Bacteria 1818
107 Ga0207713_1000039 3300025735 Bacteria 247140
108 Ga0207713_1002532 3300025735 Bacteria 13223
109 Ga0207713_1005675 3300025735 Bacteria 7757
110 Ga0207710_10000505 3300025900 Bacteria 24301
111 Ga0207654_10000005 3300025911 Bacteria 869492
112 Ga0207671_10001352 3300025914 Bacteria 28617
113 Ga0207693_10003799 3300025915 Bacteria 12863
114 Ga0207649_10000010 3300025920 Bacteria 284354
115 Ga0207681_10006846 3300025923 Bacteria 6990
116 Ga0207709_10000245 3300025935 Bacteria 66704
117 Ga0207709_10000768 3300025935 Bacteria 25259
118 Ga0207679_10000022 3300025945 Bacteria 219036
119 Ga0209281_1000003 3300027111 Bacteria 1260089
120 Ga0209281_1000005 3300027111 Bacteria 1242284
121 Ga0209281_1000181 3300027111 Bacteria 146200
122 Ga0209281_1008736 3300027111 Bacteria 2432
123 Ga0265337_1010543 3300028556 Bacteria 3233
124 Ga0265334_10003568 3300028573 Bacteria 7049
125 Ga0265318_10018135 3300028577 Bacteria 2878
126 Ga0265323_10027260 3300028653 Bacteria 2147
127 Ga0265336_10000572 3300028666 Bacteria 20760
128 Ga0265338_10001205 3300028800 Bacteria 42738
129 Ga0307514_10018797 3300031649 Bacteria 5661
130 Ga0307412_10002340 3300031911 Bacteria 10496
131 Ga0436360_1040137 3300039438 Bacteria 8020
132 Ga0436361_0437268 3300039447 Bacteria 10271
133 Ga0439466_0000582 3300041411 Bacteria 13704
134 Ga0439432_002727 3300042006 Bacteria 6602
135 Ga0439451_000048 3300042009 Bacteria 24003
136 Ga0466977_0004267 3300044666 Bacteria 7178
137 Ga0495627_000122 3300046453 Bacteria 95389
138 Ga0495627_005849 3300046453 Bacteria 4893
139 Ga0495650_0000102 3300046471 Bacteria 211007
140 Ga0495605_0015404 3300046474 Bacteria 4162
141 Ga0495605_0032326 3300046474 Bacteria 2663
142 Ga0495583_0013627 3300046506 Bacteria 4523
143 Ga0495616_0029070 3300046513 Bacteria 2921
144 Ga0495630_0076498 3300046517 Bacteria 2522
145 Ga0495632_0033139 3300046519 Bacteria 2654
146 Ga0495643_0054151 3300046522 Bacteria 2149
147 Ga0495666_0034382 3300046526 Bacteria 2474
148 Ga0495654_0000464 3300046530 Bacteria 33919
149 Ga0495622_0036565 3300046557 Bacteria 2289
150 Ga0495633_0002624 3300046558 Bacteria 12567
151 Ga0495634_0004414 3300046642 Bacteria 11054
152 Ga0495659_0002988 3300046664 Bacteria 5424
153 Ga0495646_0000103 3300046680 Bacteria 41735
154 Ga0495649_0004335 3300046694 Bacteria 9300
155 Ga0495589_0000001 3300046794 Bacteria 888100
156 Ga0495660_0000006 3300046810 Bacteria 571713
157 Ga0495660_0035877 3300046810 Bacteria 2768
158 Ga0495672_0000332 3300047320 Bacteria 62016
159 Ga0495683_0023037 3300047323 Unclassified 3201
160 Ga0495687_009012 3300047443 Bacteria 5635
161 Ga0495681_0032092 3300047470 Bacteria 2648
162 Ga0495593_0001422 3300047673 Bacteria 14041
163 Ga0495593_0013223 3300047673 Bacteria 4711
164 Ga0496102_0001765 3300048905 Bacteria 18799
165 Ga0496103_0011935 3300048906 Bacteria 5158
166 Ga0496104_0085973 3300048907 Bacteria 3002
167 Ga0496116_0000001 3300048919 Bacteria 1501681
168 Ga0496116_0000020 3300048919 Bacteria 501307
169 Ga0496116_0019468 3300048919 Bacteria 5196
170 Ga0496117_0000001 3300048920 Bacteria 2526244
171 Ga0496117_0003321 3300048920 Bacteria 18793
172 Ga0496117_0003514 3300048920 Bacteria 18149
173 Ga0496117_0007636 3300048920 Bacteria 10491
174 Ga0496117_0010799 3300048920 Bacteria 8247
175 Ga0496117_0029762 3300048920 Bacteria 4204
176 Ga0496117_0048200 3300048920 Bacteria 3046
177 Ga0496117_0061275 3300048920 Bacteria 2587
178 Ga0496118_0000002 3300048921 Bacteria 1690764
179 Ga0496118_0002115 3300048921 Bacteria 27830
180 Ga0496118_0020077 3300048921 Bacteria 5940
181 Ga0496118_0059157 3300048921 Bacteria 2856
182 Ga0496119_0000829 3300048922 Bacteria 41172
183 Ga0496119_0006048 3300048922 Bacteria 11350
184 Ga0496119_0013621 3300048922 Bacteria 6454
185 Ga0496119_0023943 3300048922 Bacteria 4312
186 Ga0496119_0032295 3300048922 Bacteria 3492
187 Ga0496119_0035456 3300048922 Bacteria 3268
188 Ga0496119_0058252 3300048922 Bacteria 2329
189 Ga0496120_0000962 3300048923 Bacteria 39282
190 Ga0496120_0000964 3300048923 Bacteria 39262
191 Ga0496120_0002102 3300048923 Bacteria 21316
192 Ga0496120_0002499 3300048923 Bacteria 18457
193 Ga0496120_0012844 3300048923 Bacteria 5673
194 Ga0496120_0019613 3300048923 Bacteria 4320
195 Ga0496120_0040345 3300048923 Bacteria 2744
196 Ga0496121_0000001 3300048924 Bacteria 1830318
197 Ga0496121_0000294 3300048924 Bacteria 103244
198 Ga0496121_0002158 3300048924 Bacteria 30779
199 Ga0496121_0007579 3300048924 Bacteria 13067
200 Ga0496121_0009441 3300048924 Bacteria 11214
201 Ga0496121_0016450 3300048924 Bacteria 7637
202 Ga0496121_0032118 3300048924 Bacteria 4779
203 Ga0496121_0046804 3300048924 Bacteria 3697
204 Ga0496121_0136220 3300048924 Bacteria 1829
205 Ga0496122_0000010 3300048925 Bacteria 547417
206 Ga0496122_0001335 3300048925 Bacteria 40346
207 Ga0496122_0003104 3300048925 Bacteria 22320
208 Ga0496122_0011852 3300048925 Bacteria 8762
209 Ga0496122_0012822 3300048925 Bacteria 8289
210 Ga0496122_0017279 3300048925 Bacteria 6757
211 Ga0496122_0025387 3300048925 Bacteria 5146
212 Ga0496122_0034158 3300048925 Bacteria 4167
213 Ga0496122_0133755 3300048925 Bacteria 1568
214 Ga0496123_0000050 3300048926 Bacteria 238021
215 Ga0496123_0000061 3300048926 Bacteria 220856
216 Ga0496123_0001010 3300048926 Bacteria 42981
217 Ga0496123_0010433 3300048926 Bacteria 8212
218 Ga0496123_0010517 3300048926 Bacteria 8162
219 Ga0496123_0062442 3300048926 Bacteria 2387
220 Ga0496123_0079633 3300048926 Bacteria 2001
221 Ga0496124_0000008 3300048927 Bacteria 864372
222 Ga0496124_0000084 3300048927 Bacteria 204993
223 Ga0496124_0000088 3300048927 Bacteria 194644
224 Ga0496124_0040071 3300048927 Bacteria 4054
225 Ga0496125_0000001 3300048928 Bacteria 1766138
226 Ga0496125_0000005 3300048928 Bacteria 827598
227 Ga0496125_0000071 3300048928 Bacteria 243580
228 Ga0496125_0000195 3300048928 Bacteria 129495
229 Ga0496125_0007179 3300048928 Bacteria 11878
230 Ga0496125_0007393 3300048928 Bacteria 11688
231 Ga0496125_0054781 3300048928 Bacteria 3256
232 Ga0496125_0059741 3300048928 Bacteria 3069
233 Ga0496125_0072669 3300048928 Bacteria 2678
234 Ga0496126_0004973 3300048929 Bacteria 15504
235 Ga0496126_0005984 3300048929 Bacteria 13670
236 Ga0496126_0007454 3300048929 Bacteria 11994
237 Ga0496126_0010144 3300048929 Bacteria 9916
238 Ga0496126_0013879 3300048929 Bacteria 8172
239 Ga0496126_0035139 3300048929 Bacteria 4700
240 Ga0496126_0208893 3300048929 Bacteria 1644
241 Ga0495682_0004299 3300049460 Bacteria 6143
242 nmdc:mga03683_11510_c1 3300050489 Bacteria 3205
243 nmdc:mga00v17_10334_c1 3300050491 Bacteria 5091
244 nmdc:mga00v17_11601_c1 3300050491 Bacteria 4845
245 nmdc:mga00v17_41_c1 3300050491 Bacteria 24972
246 nmdc:mga00v17_8949_c1 3300050491 Bacteria 5401
247 nmdc:mga0yw44_77937_c1 3300050492 Bacteria 2071
248 nmdc:mga0sz30_16098_c1 3300050516 Bacteria 2963
249 Ga0500618_002741 3300053125 Bacteria 6409
250 Ga0500568_0008539 3300053139 Bacteria 4930
251 2600194634 2599185352 Bacteria 7228948
252 2506578793 2506520007 Bacteria 5442880
253 2506583932 2506520008 Bacteria 5443009
254 2508852718 2508501071 Bacteria 5454741
255 2538428582 2537561728 Bacteria 5149301
256 2554816448 2554235132 Bacteria 6772433
257 2599624657 2599185214 Bacteria 8209958
258 2599672481 2599185226 Bacteria 8233575
259 2599683481 2599185227 Bacteria 8246414
260 2599694090 2599185229 Bacteria 8216126
261 2599903672 2599185292 Bacteria 6290804
262 2599972092 2599185307 Bacteria 6194719
263 2601668565 2600255292 Bacteria 6300551
264 2608380247 2606217733 Bacteria 6360972
265 2621300680 2619619299 Bacteria 6649820
266 2643804091 2643221557 Bacteria 7184309
267 2643860159 2643221569 Bacteria 6064337
268 2643979224 2643221594 Bacteria 5811388
269 2644064891 2643221610 Bacteria 7480339
270 2644108566 2643221618 Bacteria 7717186
271 2644120143 2643221621 Bacteria 6212786
272 2644145612 2643221626 Bacteria 8069654
273 2644185017 2643221633 Bacteria 6733554
274 2644312311 2643221655 Bacteria 7722067
275 2644335940 2643221659 Bacteria 7890716
276 2644376167 2643221668 Bacteria 7306521
277 2644416564 2643221675 Bacteria 7473456
278 2644449604 2643221680 Bacteria 7473610
279 2644546796 2643221698 Bacteria 7756764
280 2644617994 2643221712 Bacteria 7729434
281 2644676830 2643221723 Bacteria 7095460
282 2644688179 2643221726 Bacteria 7455827
283 2656279728 2654587920 Bacteria 5475511
284 2671107901 2667528173 Bacteria 5375747
285 2671585670 2671180115 Bacteria 5353919
286 2689445305 2687453601 Bacteria 5546041
287 2722883901 2721755523 Bacteria 6430384
288 2723603304 2721755693 Bacteria 6126117
289 2738673344 2738541265 Bacteria 6594665
290 2738751737 2738541282 Bacteria 6593925
291 2738860778 2738541303 Bacteria 6591772
292 2753359649 2751185800 Bacteria 5467370
293 2758641908 2758568016 Bacteria 5645291
294 2772439278 2772190666 Bacteria 5117644
295 2807176667 2806310673 Bacteria 4801221
296 2808956499 2808606382 Bacteria 6841132
297 2808979820 2808606385 Bacteria 6711065
298 2808995540 2808606388 Bacteria 6706662
299 2809035858 2808606395 Bacteria 6020352
300 2817490078 2816332298 Bacteria 6852809
301 2844169160 2844163670 Bacteria 7266046
302 2846543873 2846540461 Bacteria 5471451
303 2846958458 2846952575 Bacteria 6587527
304 2852614596 2852612431 Bacteria 6885235
305 2852667666 2852667396 Bacteria 6885555
306 2854912268 2854911287 Bacteria 5582813
307 2855195697 2855195626 Bacteria 4927512
308 2857538884 2857537821 Bacteria 5248181
309 2857547504 2857542790 Bacteria 5326616
310 2857550799 2857547612 Bacteria 6179999
311 2857578046 2857576091 Bacteria 5465855
312 2857634661 2857632687 Bacteria 2448521
313 2858470393 2858466076 Bacteria 4722413
314 2858951584 2858950400 Bacteria 6783797
315 2869554744 2869551831 Bacteria 5474685
316 2870805097 2870804320 Bacteria 2552467
317 2870806661 2870804320 Bacteria 2552467
318 2871274708 2871272651 Bacteria 5042015
319 2871284360 2871282230 Bacteria 4917173
320 2885086134 2885080285 Bacteria 6355622
321 2885201392 2885198086 Bacteria 7212419
322 2885215028 2885211737 Bacteria 7212420
323 2888369336 2888366609 Bacteria 5155009
324 2894026447 2894023352 Bacteria 5167372
325 2900054891 2900051742 Bacteria 4985156
326 2904476916 2904474040 Bacteria 5504324
327 2908674010 2908669403 Bacteria 5740494
328 2909046100 2909042592 Bacteria 6499737
329 2915653039 2915650412 Bacteria 4288180
330 2919153085 2919150387 Bacteria 5500879
331 2919683251 2919679072 Bacteria 4629602
332 2920828573 2920822456 Bacteria 6897201
333 2927147046 2927143783 Bacteria 5504251
334 2928070952 2928070936 Bacteria 8062541
335 2929138827 2929138655 Bacteria 5810547
336 2932407754 2932406140 Bacteria 5134491
337 2932414118 2932410948 Bacteria 6312192
338 2932416727 2932416698 Bacteria 6315112
339 2932423338 2932422444 Bacteria 4678430
340 2937967908 2937967321 Bacteria 5094075
341 2939580159 2939577877 Bacteria 5132791
342 2941483452
343 2941501779 2941499720 Bacteria 7599444
344 2946031723 2946027586 Bacteria 6049274
345 2947236895 2947233263 Bacteria 6439278
346 2989353601 2989349275 Bacteria 6349068
347 2996316571 2996310559 Bacteria 6357320
348 2996336360 2996336353 Bacteria 5511628
349 3002143886 3002141150 Bacteria 5254435
350 640487448 640427133 Bacteria 4567418
351 651175373 651053060 Bacteria 4689946
352 8002394823 8002392321 Bacteria 4159911
353 8004597074 8004592986 Bacteria 5122074
354 8015396431 8015394850 Bacteria 5064660
355 8052498430 8052494512 Bacteria 5765634
356 8055695735 8055693939 Bacteria 4772047
357 8057476544 8057473075 Bacteria 5892720
358 MRS2a_Contig_346
359 MRS2a_Contig_7370
360 SwRhRL2b_contig_313530
361 JGI25162J39368_1000067
362 JGI25163J39215_1000114
363 JGI25164J39214_1000039
364 JGI25159J45721_1000018
365 JGI25160J50197_1000009
366 JGI25161J50226_1000243
367 Ga0055538_1000052
368 Ga0055539_1000077
369 Ga0055533_1000083
370 Ga0055525_1000110
371 Ga0055524_1001071
372 Ga0055536_1000168
373 Ga0055536_1005130
374 Ga0055530_10010233
375 Ga0055540_1001537
376 Ga0055541_1000054
377 Ga0055543_1000090
378 Ga0065165_1000020
379 Ga0065704_10000895
380 Ga0065704_10001666
381 Ga0070661_100000062
382 Ga0070667_100038614
383 Ga0070664_100000035
384 Ga0081539_10001781
385 Ga0075364_10000779
386 Ga0075364_10005853
387 Ga0075364_10008846
388 Ga0075364_10011397
389 Ga0075364_10026132
390 Ga0075364_10064396
391 Ga0070712_100028256
392 Ga0075369_10002178
393 Ga0079104_1000011
394 Ga0079104_1000204
395 Ga0105251_10001333
396 Ga0105251_10002701
397 Ga0105244_10000498
398 Ga0105244_10000945
399 Ga0105244_10011043
400 Ga0105250_10000047
401 Ga0105250_10001038
402 Ga0105250_10005260
403 Ga0105247_10000012
404 Ga0105243_10001815
405 Ga0105243_10002813
406 Ga0105241_10000002
407 Ga0105242_10021390
408 Ga0105237_10000042
409 Ga0105246_10010883
410 Ga0157373_10000456
411 Ga0157373_10021498
412 Ga0157371_10000075
413 Ga0157371_10000217
414 Ga0157370_10016433
415 Ga0157369_10009482
416 Ga0157369_10036092
417 Ga0171463_1006
418 Ga0163162_10007106
419 Ga0163162_10043955
420 Ga0157375_10002271
421 Ga0157375_10032970
422 Ga0182006_1000006
423 Ga0182006_1006883
424 Ga0182007_10000474
425 Ga0182005_1000001
426 Ga0183363_1018
427 Ga0163161_10000001
428 Ga0163161_10002718
429 Ga0163161_10003112
430 Ga0163161_10034698
431 Ga0163161_10049715
432 Ga0213871_10001587
433 Ga0209760_100849
434 Ga0209436_100707
435 Ga0209784_100012
436 Ga0209566_100010
437 Ga0209674_100023
438 Ga0209563_100027
439 Ga0207427_100017
440 Ga0209437_100029
441 Ga0209677_100014
442 Ga0209130_1000037
443 Ga0209676_1000239
444 Ga0209676_1000595
445 Ga0209676_1001213
446 Ga0209025_1000196
447 Ga0209564_1000086
448 Ga0209050_1000962
449 Ga0209050_1001546
450 Ga0209256_1000276
451 Ga0209256_1001111
452 Ga0207426_1000048
453 Ga0209051_1000787
454 Ga0209257_1002569
455 Ga0209257_1021280
456 Ga0207696_1000001
457 Ga0207696_1000017
458 Ga0207696_1000874
459 Ga0207655_1000070
460 Ga0207655_1000110
461 Ga0207655_1001135
462 Ga0207655_1008104
463 Ga0207655_1045955
464 Ga0207713_1000039
465 Ga0207713_1002532
466 Ga0207713_1005675
467 Ga0207710_10000505
468 Ga0207654_10000005
469 Ga0207671_10001352
470 Ga0207693_10003799
471 Ga0207649_10000010
472 Ga0207681_10006846
473 Ga0207709_10000245
474 Ga0207709_10000768
475 Ga0207679_10000022
476 Ga0209281_1000003
477 Ga0209281_1000005
478 Ga0209281_1000181
479 Ga0209281_1008736
480 Ga0265337_1010543
481 Ga0265334_10003568
482 Ga0265318_10018135
483 Ga0265323_10027260
484 Ga0265336_10000572
485 Ga0265338_10001205
486 Ga0307514_10018797
487 Ga0307412_10002340
488 Ga0436360_1040137
489 Ga0436361_0437268
490 Ga0439466_0000582
491 Ga0439432_002727
492 Ga0439451_000048
493 Ga0466977_0004267
494 Ga0495627_000122
495 Ga0495627_005849
496 Ga0495650_0000102
497 Ga0495605_0015404
498 Ga0495605_0032326
499 Ga0495583_0013627
500 Ga0495616_0029070
501 Ga0495630_0076498
502 Ga0495632_0033139
503 Ga0495643_0054151
504 Ga0495666_0034382
505 Ga0495654_0000464
506 Ga0495622_0036565
507 Ga0495633_0002624
508 Ga0495634_0004414
509 Ga0495659_0002988
510 Ga0495646_0000103
511 Ga0495649_0004335
512 Ga0495589_0000001
513 Ga0495660_0000006
514 Ga0495660_0035877
515 Ga0495672_0000332
516 Ga0495683_0023037
517 Ga0495687_009012
518 Ga0495681_0032092
519 Ga0495593_0001422
520 Ga0495593_0013223
521 Ga0496102_0001765
522 Ga0496103_0011935
523 Ga0496104_0085973
524 Ga0496116_0000001
525 Ga0496116_0000020
526 Ga0496116_0019468
527 Ga0496117_0000001
528 Ga0496117_0003321
529 Ga0496117_0003514
530 Ga0496117_0007636
531 Ga0496117_0010799
532 Ga0496117_0029762
533 Ga0496117_0048200
534 Ga0496117_0061275
535 Ga0496118_0000002
536 Ga0496118_0002115
537 Ga0496118_0020077
538 Ga0496118_0059157
539 Ga0496119_0000829
540 Ga0496119_0006048
541 Ga0496119_0013621
542 Ga0496119_0023943
543 Ga0496119_0032295
544 Ga0496119_0035456
545 Ga0496119_0058252
546 Ga0496120_0000962
547 Ga0496120_0000964
548 Ga0496120_0002102
549 Ga0496120_0002499
550 Ga0496120_0012844
551 Ga0496120_0019613
552 Ga0496120_0040345
553 Ga0496121_0000001
554 Ga0496121_0000294
555 Ga0496121_0002158
556 Ga0496121_0007579
557 Ga0496121_0009441
558 Ga0496121_0016450
559 Ga0496121_0032118
560 Ga0496121_0046804
561 Ga0496121_0136220
562 Ga0496122_0000010
563 Ga0496122_0001335
564 Ga0496122_0003104
565 Ga0496122_0011852
566 Ga0496122_0012822
567 Ga0496122_0017279
568 Ga0496122_0025387
569 Ga0496122_0034158
570 Ga0496122_0133755
571 Ga0496123_0000050
572 Ga0496123_0000061
573 Ga0496123_0001010
574 Ga0496123_0010433
575 Ga0496123_0010517
576 Ga0496123_0062442
577 Ga0496123_0079633
578 Ga0496124_0000008
579 Ga0496124_0000084
580 Ga0496124_0000088
581 Ga0496124_0040071
582 Ga0496125_0000001
583 Ga0496125_0000005
584 Ga0496125_0000071
585 Ga0496125_0000195
586 Ga0496125_0007179
587 Ga0496125_0007393
588 Ga0496125_0054781
589 Ga0496125_0059741
590 Ga0496125_0072669
591 Ga0496126_0004973
592 Ga0496126_0005984
593 Ga0496126_0007454
594 Ga0496126_0010144
595 Ga0496126_0013879
596 Ga0496126_0035139
597 Ga0496126_0208893
598 Ga0495682_0004299
599 nmdc:mga03683_11510_c1
600 nmdc:mga00v17_10334_c1
601 nmdc:mga00v17_11601_c1
602 nmdc:mga00v17_41_c1
603 nmdc:mga00v17_8949_c1
604 nmdc:mga0yw44_77937_c1
605 nmdc:mga0sz30_16098_c1
606 Ga0500618_002741
607 Ga0500568_0008539
608 2600194634
609 2506578793
610 2506583932
611 2508852718
612 2538428582
613 2554816448
614 2599624657
615 2599672481
616 2599683481
617 2599694090
618 2599903672
619 2599972092
620 2601668565
621 2608380247
622 2621300680
623 2643804091
624 2643860159
625 2643979224
626 2644064891
627 2644108566
628 2644120143
629 2644145612
630 2644185017
631 2644312311
632 2644335940
633 2644376167
634 2644416564
635 2644449604
636 2644546796
637 2644617994
638 2644676830
639 2644688179
640 2656279728
641 2671107901
642 2671585670
643 2689445305
644 2722883901
645 2723603304
646 2738673344
647 2738751737
648 2738860778
649 2753359649
650 2758641908
651 2772439278
652 2807176667
653 2808956499
654 2808979820
655 2808995540
656 2809035858
657 2817490078
658 2844169160
659 2846543873
660 2846958458
661 2852614596
662 2852667666
663 2854912268
664 2855195697
665 2857538884
666 2857547504
667 2857550799
668 2857578046
669 2857634661
670 2858470393
671 2858951584
672 2869554744
673 2870805097
674 2870806661
675 2871274708
676 2871284360
677 2885086134
678 2885201392
679 2885215028
680 2888369336
681 2894026447
682 2900054891
683 2904476916
684 2908674010
685 2909046100
686 2915653039
687 2919153085
688 2919683251
689 2920828573
690 2927147046
691 2928070952
692 2929138827
693 2932407754
694 2932414118
695 2932416727
696 2932423338
697 2937967908
698 2939580159
699 2941483452
700 2941501779
701 2946031723
702 2947236895
703 2989353601
704 2996316571
705 2996336360
706 3002143886
707 640487448
708 651175373
709 8002394823
710 8004597074
711 8015396431
712 8052498430
713 8055695735
714 8057476544

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07690

MFS_1

Major Facilitator Superfamily

9

401

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
7y58-assembly1.cif.gz_A cryoem structure of qaca (d411n), an antibacterial efflux transporter from staphylococcus aureus 0.8424 6 464
7y58-assembly1.cif.gz_A cryoem structure of qaca (d411n), an antibacterial efflux transporter from staphylococcus aureus 0.8117 6 464
7d5q-assembly1.cif.gz_A structure of norc transporter (k398a mutant) in an outward-open conformation in complex with a single-chain indian camelid antibody 0.7448 5 460
6kkj-assembly1.cif.gz_B crystal structure of drug:proton antiporter-1 (dha1) family sotb, in the inward open conformation 0.741 5 455
8pnl-assembly1.cif.gz_A outward-open conformation of a major facilitator superfamily (mfs) transporter mhas2168, a homologue of rv1410 from m. tuberculosis, in complex with an alpaca nanobody 0.7375 4 457
ID Description Score Start End Superfamily
af_P9WJW9_258_425_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.94 251 404 1.20.1250.20
af_P9WG91_255_421_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.926 250 404 1.20.1250.20
af_P0AA78_1_199_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.908 2 178 1.20.1250.20
af_P9WG87_21_208_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9073 5 191 1.20.1250.20
af_Q2FVL1_1_184_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9068 21 200 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A7X7SSR9-F1-model_v4 MFS transporter 0.9315 5 189 GO:0016020
GO:0022857
AF-A0A520EWA9-F1-model_v4 MFS transporter 0.9251 6 155 GO:0016020
GO:0022857
AF-A0A2K2TJ46-F1-model_v4 MFS transporter 0.9223 6 139 GO:0005886
GO:0022857
AF-C0XND7-F1-model_v4 Drug resistance transporter, EmrB/QacA family 0.92 3 171 GO:0005886
GO:0022857
AF-A0A7H5A152-F1-model_v4 Major facilitator superfamily (MFS) profile domain-containing protein 0.9192 5 179 GO:0005886
GO:0046943

Map