F420887

General Info

Members Datasets Scaffolds Average Seq Length
357 256 715 425

Family's Representative Sequence

Representative Sequence 3300032002|Ga0307416_100106972|Ga0307416_1001069722
Length 453
Sequence LYEKVKDCKSLTLDSISIVTRQLIHNRRRTTMQGEKITVTNGVLNVPNNPIIPFIEGDGIGPDIWAASERVLNAAVEKAYKGERKLVWKEVLAGEKAFNQTGEWLPKETLDVINEYLIAIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPVRWFEGVPSPVKRPQDTDMVIFRENTEDIYAGIEYEKGTEAVKKVIDFLQNEMGVNKIRFPETSGIGIKPVSEEGTTRLVRAAINYAIKEGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEFGDQVFTWAQYDTIKAEQGSDAANKAQADAEAAGKIVVKDAIADIFLQQILTRPREFDVVATMNLNGDFISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEAAKMVIKSVENTIASKVVTYDFARLMDGATEVKTSEFADELIKNME

Samples

Sample ID Description Type Environment
1 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
6 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
7 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
8 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
18 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
19 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
21 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
24 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
25 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
26 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
27 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
28 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
29 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
32 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
33 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
34 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
36 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027252 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
49 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300030083 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JPPOOL-T1 Metagenome Unclassified
53 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
54 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
55 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
56 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
57 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
58 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
59 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
60 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
61 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
62 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
63 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
64 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
65 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
66 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
67 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
68 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
69 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
70 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
71 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
72 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
73 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
74 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
75 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
76 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
77 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
78 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
79 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
80 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
81 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
82 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
83 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
84 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
85 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
86 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
87 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
88 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
89 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
90 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
91 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
92 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
93 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
94 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
95 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
96 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
97 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
98 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
99 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
100 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
101 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
102 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
103 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
104 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
105 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
106 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
107 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
108 3300049128 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
109 3300049131 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_B_5_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
110 3300049132 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
111 3300049133 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
112 3300049134 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
113 3300049160 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
114 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
115 3300049162 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
116 3300049527 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
117 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
118 3300049529 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
119 3300049531 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
120 3300049532 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
121 3300049533 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
122 3300049534 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
123 3300049536 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_A_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
124 3300049537 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B12_A_3_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
125 3300049539 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
126 3300049540 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
127 3300049541 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_A_4_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
128 3300049543 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F12_A_4_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
129 3300049546 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J12_B_4_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
130 3300049547 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_A_5_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
131 3300049548 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_A_5_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
132 3300049549 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_A_5_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
133 3300049550 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_A_5_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
134 3300049551 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
135 3300049552 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_A_7_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
136 3300049553 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_A_7_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
137 3300049554 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_A_7_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
138 3300049556 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
139 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
140 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
141 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
142 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
143 2511231119 Bacillus velezensis CAU B946 Isolate Rhizosphere
144 2540341094 Bacillus subtilis XF-1 Isolate Rhizosphere
145 2545555800 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
146 2551306519 Bacillus sp. WBUNB004 Isolate Rhizosphere
147 2554235283 Bacillus safensis VK Isolate Rhizosphere
148 2576861599 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
149 2593339131 Bacillus sp. UNCCL81 Isolate Unclassified
150 2599185353 Staphylococcus sp. NFPP34 Isolate Rhizoplane
151 2630968484 Bacillus methylotrophicus KACC 13105 Isolate Rhizosphere
152 2643221729 Bacillus sp. Root11 Isolate Unclassified
153 2643221730 Bacillus sp. Root131 Isolate Unclassified
154 2643221731 Bacillus sp. Root147 Isolate Unclassified
155 2643221732 Bacillus sp. Root239 Isolate Unclassified
156 2643221735 Bacillus sp. Root920 Isolate Unclassified
157 2648501850 Bacillus amyloliquefaciens RHNK22 Isolate Rhizosphere
158 2671180844 Bacillus amyloliquefaciens Bs006 Isolate Unclassified
159 2684622632 Bacillus cereus 905 Isolate Unclassified
160 2684623153 Bacillus pumilus SH-B9 Isolate Unclassified
161 2687453109 Bacillus pumilus SH-B11 Isolate Unclassified
162 2695420354 Bacillus sp. Co1-6 Isolate Unclassified
163 2695420987 Bacillus thuringiensis KNU-07 Isolate Unclassified
164 2703719227 Bacillus mycoides GOE6 Isolate Rhizosphere
165 2716884898 Bacillus methylotrophicus FKM10 Isolate Rhizosphere
166 2718218445 Bacillus sp. B25(2016b) Isolate Rhizosphere
167 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
168 2738541295 Bacillus sp. OK085 Isolate Unclassified
169 2738541299 Paenisporosarcina sp. OV554 Isolate Unclassified
170 2738541358 Bacillus sp. OV752 Isolate Unclassified
171 2738543006 Bacillus sp. OK077 Isolate Unclassified
172 2738543010 Bacillus sp. YR335 Isolate Unclassified
173 2738543017 Bacillus sp. OV186 Isolate Unclassified
174 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
175 2757320391 Bacillus sp. NFR08 Isolate Rhizoplane
176 2775507177 Bacillus sp. AFS055030 Isolate Unclassified
177 2775507192 Bacillus sp. AFS041924 Isolate Unclassified
178 2808606364 Bacillus sp. SLBN-3 Isolate Unclassified
179 2808606399 Bacillus sp. SJZ110 Isolate Rhizosphere
180 2811994870 Bacillus sp. JB4 Isolate Unclassified
181 2818991441 Niallia circulans 3243 Isolate Rhizosphere
182 2818991443 Bacillus thuringiensis 1230 Isolate Unclassified
183 2818991465 Priestia megaterium 3291 Isolate Rhizosphere
184 2818991468 Bacillus safensis 3300 Isolate Rhizosphere
185 2823526263 Bacillus altitudinis P-10 Isolate Unclassified
186 2842882022 Bacillus sp. R-71893 Isolate Unclassified
187 2852673933 Sporosarcina sp. JAI121 Isolate Rhizosphere
188 2857472729 Cohnella sp. R-74144 Isolate Unclassified
189 2857586860 Bacillus sp. R-71935 Isolate Unclassified
190 2857609550 Domibacillus sp. R-71929 Isolate Unclassified
191 2860837431 Bacillus sp. WR11 Isolate Unclassified
192 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
193 2877768649 Bacillus amyloliquefaciens Y14 Isolate Rhizosphere
194 2880169592 Bacillus velezensis T20E-257 Isolate Unclassified
195 2881644220 Siminovitchia terrae LMG 29736 Isolate Rhizosphere
196 2897109615 Bacillus amyloliquefaciens YP6 Isolate Unclassified
197 2904524088 Priestia megaterium 1428 Isolate Rhizosphere
198 2904560550 Bacillus velezensis 1780 Isolate Rhizosphere
199 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
200 2908665501 Bacillus pumilus 1391 Isolate Rhizosphere
201 2916971899 Alkalihalobacillus miscanthi AK13 Isolate Rhizosphere
202 2919093281 Bacillus safensis 1383 Isolate Rhizosphere
203 2919143609 Priestia megaterium 1751 Isolate Rhizosphere
204 2919414237 Neobacillus niacini 3240 Isolate Rhizosphere
205 2919517244 Priestia aryabhattai 3820 Isolate Unclassified
206 2919720352 Priestia megaterium 4340 Isolate Unclassified
207 2919726948 Bacillus pumilus 4489 Isolate Unclassified
208 2928093941 Priestia aryabhattai 1389 Isolate Rhizosphere
209 2928510474 Sporosarcina psychrophila 1288 Isolate Rhizosphere
210 2929004312 Priestia megaterium 1104 Isolate Unclassified
211 2929233124 Bacillus sp. R-74298 Hybrid assembly Isolate Unclassified
212 2936340661 Gottfriedia acidiceleris 1-17 Isolate Rhizosphere
213 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
214 2938917290 Bacillus sp. CR71 Isolate Unclassified
215 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
216 2947426588 Bacillus sp. RZ2MS9 Isolate Rhizosphere
217 2954773129 Bacillus sp. TBS-096 Isolate Rhizosphere
218 2956897341 Ectobacillus funiculus W18-2 Isolate Rhizosphere
219 2960319331 Priestia megaterium AFS057444 Isolate Unclassified
220 2960375949 Priestia megaterium AFS067084 Isolate Unclassified
221 2962290636 Bacillus subtilis TLO3 Isolate Rhizosphere
222 2964375228 Anaerobacillus alkaliphilus B16-10 Isolate Rhizosphere
223 2965761152 Bacillus sp. COPE52 Isolate Unclassified
224 2969136845 Bacillus subtilis TLO3 Isolate Rhizosphere
225 2969141011 Bacillus velezensis MH25 Isolate Unclassified
226 2969765954 Bacillus intestinalis GM2 Isolate Rhizosphere
227 2969770375 Bacillus subtilis GM5 Isolate Rhizosphere
228 2971893375 Bacillus sp. HNA3 Isolate Rhizosphere
229 2977254563 Bacillus sp. SORGH_AS 510 Isolate Unclassified
230 2979083700 Bacillus toyonensis SORGH_AS 407 Isolate Unclassified
231 2980492589 Bacillus subtilis GQJK2 Isolate Rhizosphere
232 2990275345 Bacillus sp. SLBN-46 Isolate Unclassified
233 3001267043 Bacillus sp. FJAT-49870 Isolate Rhizosphere
234 3001272096 Lederbergia citrisecunda FJAT-49732 Isolate Rhizosphere
235 3001892409 Neobacillus rhizophilus FJAT-49825 Isolate Rhizosphere
236 3006826541 Bacillus haikouensis CrR16 Isolate Unclassified
237 3006879489 Bacillus atrophaeus UCMB-5137 Isolate Rhizosphere
238 3006969106 Bacillus sp. FJAT-50079 Isolate Rhizosphere
239 3006973921 Bacillus sp. FJAT-49736 Isolate Rhizosphere
240 3006978542 Bacillus sp. FJAT-49705 Isolate Rhizosphere
241 3006984091 Lederbergia citrea FJAT-49754 Isolate Rhizosphere
242 3006988479 Bacillus sp. FJAT-49711 Isolate Rhizosphere
243 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
244 8022630665 Bacillus sp. PW192 Isolate Rhizosphere
245 8022653035 Bacillus sp. Rc4 Isolate Unclassified
246 8022792930 Bacillus sp. Xin Isolate Rhizosphere
247 8022893055 Bacillus aryabhattai AFS007213 Isolate Unclassified
248 8022914991 Bacillus aryabhattai SQU-R12 Isolate Unclassified
249 8022948649 Bacillus endophyticus FH5 Isolate Rhizosphere
250 8023438354 Bacillus sp. BH2 Isolate Unclassified
251 8023444577 Bacillus sp. BH32 Isolate Unclassified
252 8051952484 Bacillus amyloliquefaciens K2 Isolate Rhizosphere
253 8052174270 Bacillus velezensis CH13 Isolate Rhizosphere
254 8054280661 Metabacillus kandeliae GX 13764 Isolate Rhizosphere
255 8057582654 Bacillus arachidis YX15 Isolate Rhizosphere
256 8057632132 Cytobacillus kochii RZ2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 42.3
Metatranscriptomes 25.77
Isolates 31.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.6
Nodule 0
Rhizoplane 4.76
Rhizosphere 70.03
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307416_100106972 3300032002 Bacteria 2453
2 JGI25151J46595_10000533 3300003187 Bacteria 35363
3 JGI25151J46595_10012585 3300003187 Bacteria 3843
4 JGI25151J46595_10017117 3300003187 Bacteria 3153
5 rootH1_10005765 3300003316 Bacteria 19570
6 rootH1_10005765 3300003323 Bacteria 6456
7 rootL2_10013974 3300003322 Bacteria 148551
8 Ga0006562J51391_1000740 3300003578 Bacteria 18730
9 Ga0006562J51391_1001378 3300003578 Bacteria 19300
10 Ga0006562J51391_1003298 3300003578 Bacteria 3570
11 Ga0006562J51391_1004995 3300003578 Bacteria 4459
12 Ga0006562J51391_1006451 3300003578 Bacteria 2387
13 Ga0055532_1000187 3300003758 Bacteria 51861
14 Ga0055528_1008226 3300003790 Bacteria 4505
15 Ga0070676_10018040 3300005328 Bacteria 3908
16 Ga0070670_100088596 3300005331 Bacteria 2660
17 Ga0070669_100046269 3300005353 Bacteria 3173
18 Ga0070675_100091068 3300005354 Bacteria 2554
19 Ga0070673_100032846 3300005364 Bacteria 3912
20 Ga0070700_100016412 3300005441 Bacteria 4219
21 Ga0070708_100158286 3300005445 Bacteria 2109
22 Ga0068867_100032385 3300005459 Bacteria 3781
23 Ga0068867_100125032 3300005459 Bacteria 1992
24 Ga0068859_100173876 3300005617 Bacteria 2235
25 Ga0068865_100077082 3300006881 Bacteria 2381
26 Ga0097620_100173878 3300006931 Bacteria 2235
27 Ga0111539_10290737 3300009094 Bacteria 1902
28 Ga0105245_10004160 3300009098 Bacteria 12853
29 Ga0105245_10036929 3300009098 Bacteria 4342
30 Ga0105247_10007686 3300009101 Bacteria 6596
31 Ga0114129_10042212 3300009147 Bacteria 6421
32 Ga0105242_10005368 3300009176 Bacteria 9911
33 Ga0105239_10048356 3300010375 Bacteria 4664
34 Ga0105246_10003911 3300011119 Bacteria 9023
35 Ga0157371_10004713 3300013102 Bacteria 11787
36 Ga0157378_10001003 3300013297 Bacteria 25863
37 Ga0157376_10080045 3300014969 Bacteria 2802
38 Ga0209566_100259 3300025225 Bacteria 50462
39 Ga0209147_100058 3300025229 Bacteria 252750
40 Ga0209147_100262 3300025229 Bacteria 48219
41 Ga0209147_101281 3300025229 Bacteria 9788
42 Ga0209673_1003187 3300025273 Bacteria 9978
43 Ga0209130_1002918 3300025284 Bacteria 7830
44 Ga0209675_1015788 3300025291 Bacteria 2226
45 Ga0209676_1006577 3300025292 Bacteria 5695
46 Ga0209025_1000001 3300025294 Bacteria 1888151
47 Ga0209025_1000273 3300025294 Bacteria 119753
48 Ga0209025_1000347 3300025294 Bacteria 100528
49 Ga0209025_1000567 3300025294 Bacteria 67307
50 Ga0209025_1000941 3300025294 Bacteria 44298
51 Ga0209025_1002572 3300025294 Bacteria 18852
52 Ga0209025_1020953 3300025294 Bacteria 3545
53 Ga0207696_1002210 3300025711 Bacteria 9740
54 Ga0207655_1003608 3300025728 Bacteria 11446
55 Ga0207713_1000727 3300025735 Bacteria 30847
56 Ga0207642_10062187 3300025899 Bacteria 1740
57 Ga0207709_10010977 3300025935 Bacteria 4993
58 Ga0207691_10009756 3300025940 Bacteria 9216
59 Ga0207668_10052916 3300025972 Bacteria 2811
60 Ga0207677_10162167 3300026023 Bacteria 1738
61 Ga0207708_10034575 3300026075 Bacteria 3844
62 Ga0207648_10116980 3300026089 Bacteria 2343
63 Ga0207683_10053401 3300026121 Bacteria 3543
64 Ga0209973_1001322 3300027252 Bacteria 2144
65 Ga0209371_1002334 3300027312 Bacteria 10795
66 Ga0209983_1009194 3300027665 Bacteria 2020
67 Ga0268266_10125548 3300028379 Bacteria 2289
68 Ga0268264_10025480 3300028381 Bacteria 4832
69 Ga0237817_10110 3300030083 Bacteria 25051
70 Ga0268256_1002074 3300030500 Bacteria 10791
71 Ga0265760_10009442 3300031090 Bacteria 2785
72 Ga0307408_100008506 3300031548 Bacteria 6777
73 Ga0316575_10009029 3300031665 Bacteria 3644
74 Ga0316575_10027696 3300031665 Bacteria 2205
75 Ga0316575_10036737 3300031665 Bacteria 1928
76 Ga0316575_10041405 3300031665 Bacteria 1822
77 Ga0316579_10001495 3300031691 Bacteria 8498
78 Ga0316576_10023331 3300031727 Bacteria 4307
79 Ga0316576_10084380 3300031727 Bacteria 2360
80 Ga0316576_10095162 3300031727 Bacteria 2222
81 Ga0316576_10106256 3300031727 Bacteria 2102
82 Ga0316578_10009448 3300031728 Bacteria 5019
83 Ga0316578_10022851 3300031728 Bacteria 3493
84 Ga0316578_10088603 3300031728 Bacteria 1847
85 Ga0316577_10002533 3300031733 Bacteria 9079
86 Ga0316577_10002598 3300031733 Bacteria 8974
87 Ga0316577_10015385 3300031733 Bacteria 4209
88 Ga0316577_10126791 3300031733 Bacteria 1435
89 Ga0307409_100039607 3300031995 Bacteria 3499
90 Ga0307416_100056381 3300032002 Bacteria 3171
91 Ga0316580_10021542 3300032139 Bacteria 1986
92 Ga0316593_10022591 3300032168 Bacteria 1978
93 Ga0316593_10025634 3300032168 Bacteria 1879
94 Ga0316593_10044965 3300032168 Bacteria 1479
95 Ga0316592_1019089 3300033524 Bacteria 1449
96 Ga0316592_1022585 3300033524 Bacteria 1346
97 Ga0316596_1014029 3300033541 Bacteria 1982
98 Ga0316596_1032390 3300033541 Bacteria 1360
99 Ga0316574_0003050 3300035398 Bacteria 8538
100 Ga0316574_0006574 3300035398 Bacteria 6295
101 Ga0316574_0048436 3300035398 Bacteria 2639
102 Ga0316574_0066611 3300035398 Bacteria 2269
103 Ga0316574_0074787 3300035398 Bacteria 2144
104 Ga0373935_0015589 3300035692 Bacteria 4595
105 Ga0316582_0003335 3300036647 Bacteria 7848
106 Ga0316582_0014447 3300036647 Bacteria 4481
107 Ga0316582_0054815 3300036647 Bacteria 2540
108 Ga0316582_0082670 3300036647 Bacteria 2100
109 Ga0316582_0095626 3300036647 Bacteria 1961
110 Ga0316584_0001476 3300036712 Bacteria 14129
111 Ga0316584_0006973 3300036712 Bacteria 7685
112 Ga0316584_0033943 3300036712 Bacteria 3780
113 Ga0316584_0064697 3300036712 Bacteria 2738
114 Ga0373925_0215330 3300037068 Bacteria 1531
115 Ga0395905_0170668 3300037471 Bacteria 2043
116 Ga0316581_0031029 3300037588 Bacteria 1610
117 Ga0237819_00934 3300038705 Bacteria 8961
118 Ga0400483_278553 3300039062 Bacteria 6375
119 Ga0451577_0002796 3300042876 Bacteria 20141
120 Ga0451577_0024352 3300042876 Bacteria 5507
121 Ga0451577_0070458 3300042876 Bacteria 3118
122 Ga0453684_0000770 3300044712 Bacteria 110820
123 Ga0453684_0012679 3300044712 Bacteria 13846
124 Ga0453684_0021872 3300044712 Bacteria 9519
125 Ga0453684_0215452 3300044712 Bacteria 2228
126 Ga0453684_0223887 3300044712 Bacteria 2177
127 Ga0453684_0328353 3300044712 Bacteria 1730
128 Ga0466967_0000077 3300045976 Bacteria 35774
129 Ga0495603_0097054 3300046455 Bacteria 1721
130 Ga0495582_0004232 3300046473 Bacteria 8073
131 Ga0495584_0015554 3300046491 Bacteria 3878
132 Ga0495585_0011073 3300046492 Bacteria 5354
133 Ga0495607_0099001 3300046501 Bacteria 1565
134 Ga0495622_0020097 3300046557 Bacteria 3110
135 Ga0495622_0054561 3300046557 Bacteria 1854
136 Ga0495661_0026091 3300046665 Bacteria 3765
137 Ga0495658_0000893 3300046683 Bacteria 16031
138 Ga0495649_0031712 3300046694 Bacteria 2913
139 Ga0495683_0008780 3300047323 Bacteria 5392
140 Ga0496100_0011857 3300048903 Bacteria 4975
141 Ga0496102_0009455 3300048905 Bacteria 8376
142 Ga0496102_0070486 3300048905 Bacteria 3210
143 Ga0496103_0005271 3300048906 Bacteria 7761
144 Ga0496104_0003934 3300048907 Bacteria 12850
145 Ga0496105_0001833 3300048908 Bacteria 15214
146 Ga0496106_0000224 3300048909 Bacteria 39551
147 Ga0496107_0000983 3300048910 Bacteria 16920
148 Ga0496108_0006315 3300048911 Bacteria 9602
149 Ga0496109_0002078 3300048912 Bacteria 16634
150 Ga0496110_0009718 3300048913 Bacteria 7790
151 Ga0496111_0006464 3300048914 Bacteria 7613
152 Ga0496112_0028005 3300048915 Bacteria 5435
153 Ga0496112_0039399 3300048915 Bacteria 4618
154 Ga0496113_0004622 3300048916 Bacteria 8485
155 Ga0496116_0003619 3300048919 Bacteria 15193
156 Ga0496117_0041616 3300048920 Bacteria 3364
157 Ga0496120_0017688 3300048923 Bacteria 4610
158 Ga0496124_0089909 3300048927 Bacteria 2506
159 Ga0496125_0008620 3300048928 Bacteria 10639
160 Ga0496126_0025464 3300048929 Bacteria 5692
161 Ga0501306_001940 3300049127 Bacteria 2040
162 Ga0501308_000836 3300049128 Bacteria 2226
163 Ga0501341_00045 3300049131 Bacteria 3255
164 Ga0501341_00113 3300049131 Bacteria 2546
165 Ga0501343_000075 3300049132 Bacteria 4060
166 Ga0501343_000088 3300049132 Bacteria 3907
167 Ga0501343_000326 3300049132 Bacteria 2685
168 Ga0501343_001257 3300049132 Bacteria 1690
169 Ga0501344_00019 3300049133 Bacteria 4022
170 Ga0501344_00033 3300049133 Bacteria 3534
171 Ga0501345_00012 3300049134 Bacteria 4018
172 Ga0501345_00020 3300049134 Bacteria 3273
173 Ga0501304_000376 3300049160 Bacteria 2213
174 Ga0501305_000097 3300049161 Bacteria 5157
175 Ga0501305_000226 3300049161 Bacteria 4095
176 Ga0501305_000246 3300049161 Bacteria 4012
177 Ga0501305_000380 3300049161 Bacteria 3561
178 Ga0501305_001044 3300049161 Bacteria 2575
179 Ga0501307_003576 3300049162 Bacteria 1533
180 Ga0501311_000191 3300049527 Bacteria 3563
181 Ga0501311_000255 3300049527 Bacteria 3299
182 Ga0501311_000332 3300049527 Bacteria 3105
183 Ga0501312_000190 3300049528 Bacteria 4156
184 Ga0501312_000219 3300049528 Bacteria 4019
185 Ga0501312_000583 3300049528 Bacteria 3060
186 Ga0501313_000097 3300049529 Bacteria 4228
187 Ga0501313_000425 3300049529 Bacteria 2838
188 Ga0501313_000447 3300049529 Bacteria 2792
189 Ga0501315_000150 3300049531 Bacteria 3954
190 Ga0501315_000165 3300049531 Bacteria 3795
191 Ga0501315_000211 3300049531 Bacteria 3553
192 Ga0501315_000212 3300049531 Bacteria 3549
193 Ga0501315_000222 3300049531 Bacteria 3501
194 Ga0501315_000956 3300049531 Bacteria 2277
195 Ga0501315_006519 3300049531 Bacteria 1302
196 Ga0501316_000156 3300049532 Bacteria 3739
197 Ga0501316_000193 3300049532 Bacteria 3599
198 Ga0501316_000211 3300049532 Bacteria 3522
199 Ga0501316_002251 3300049532 Bacteria 1766
200 Ga0501316_003388 3300049532 Bacteria 1544
201 Ga0501317_000122 3300049533 Bacteria 4157
202 Ga0501317_000180 3300049533 Bacteria 3709
203 Ga0501317_000197 3300049533 Bacteria 3627
204 Ga0501317_000220 3300049533 Bacteria 3504
205 Ga0501318_000140 3300049534 Bacteria 3472
206 Ga0501318_000172 3300049534 Bacteria 3295
207 Ga0501318_000192 3300049534 Bacteria 3213
208 Ga0501318_000936 3300049534 Bacteria 2101
209 Ga0501320_001628 3300049536 Bacteria 1686
210 Ga0501321_000179 3300049537 Bacteria 3512
211 Ga0501321_000232 3300049537 Bacteria 3208
212 Ga0501323_000188 3300049539 Bacteria 3963
213 Ga0501323_000211 3300049539 Bacteria 3793
214 Ga0501323_000385 3300049539 Bacteria 3181
215 Ga0501324_000126 3300049540 Bacteria 3120
216 Ga0501324_000215 3300049540 Bacteria 2742
217 Ga0501325_000101 3300049541 Bacteria 2836
218 Ga0501327_00109 3300049543 Bacteria 2596
219 Ga0501330_000031 3300049546 Bacteria 3534
220 Ga0501331_00036 3300049547 Bacteria 3528
221 Ga0501332_00054 3300049548 Bacteria 3314
222 Ga0501332_00081 3300049548 Bacteria 2889
223 Ga0501333_000098 3300049549 Bacteria 2849
224 Ga0501333_000145 3300049549 Bacteria 2649
225 Ga0501333_000910 3300049549 Bacteria 1494
226 Ga0501334_00064 3300049550 Bacteria 3338
227 Ga0501335_000093 3300049551 Bacteria 4058
228 Ga0501335_000150 3300049551 Bacteria 3583
229 Ga0501335_000184 3300049551 Bacteria 3382
230 Ga0501335_000361 3300049551 Bacteria 2779
231 Ga0501336_000026 3300049552 Bacteria 4929
232 Ga0501336_000049 3300049552 Bacteria 3994
233 Ga0501336_000374 3300049552 Bacteria 2156
234 Ga0501337_000077 3300049553 Bacteria 3516
235 Ga0501338_00052 3300049554 Bacteria 3501
236 Ga0501338_00135 3300049554 Bacteria 2611
237 Ga0501340_000065 3300049556 Bacteria 3100
238 Ga0501340_000096 3300049556 Bacteria 2761
239 Ga0501340_000118 3300049556 Bacteria 2654
240 Ga0501067_0020029 3300049583 Bacteria 3702
241 Ga0501073_0018630 3300049589 Bacteria 5018
242 nmdc:mga05p37_58976_c1 3300050507 Bacteria 3521
243 Ga0501084_0003488 3300054114 Bacteria 12782
244 Ga0501084_0108359 3300054114 Bacteria 2334
245 2511700584 2511231119 Bacteria 4019861
246 2540607798 2540341094 Bacteria 4061186
247 2545557282 2545555800 Bacteria 4222588
248 2553396383 2551306519 Bacteria 5465154
249 2555469859 2554235283 Bacteria 3683090
250 2578931545 2576861599 Bacteria 4217202
251 2595090731 2593339131 Bacteria 5116855
252 2600198401 2599185353 Bacteria 2219443
253 2631984517 2630968484 Bacteria 3876276
254 2644706427 2643221729 Bacteria 6621700
255 2644713108 2643221730 Bacteria 6523787
256 2644715547 2643221731 Bacteria 5623886
257 2644726851 2643221732 Bacteria 5756404
258 2644741452 2643221735 Bacteria 3676263
259 2651532695 2648501850 Bacteria 3975476
260 2674418589 2671180844 Bacteria 4164150
261 2685152561 2684622632 Bacteria 5380049
262 2686997872 2684623153 Bacteria 3878815
263 2687499212 2687453109 Bacteria 3860091
264 2695628578 2695420354 Bacteria 3922431
265 2698320609 2695420987 Bacteria 6152737
266 2705996484 2703719227 Bacteria 5631989
267 2717915729 2716884898 Bacteria 3928789
268 2721507719 2718218445 Bacteria 5113413
269 2730139175 2728369359 Bacteria 5621728
270 2738815483 2738541295 Bacteria 5730091
271 2738838299 2738541299 Bacteria 4020721
272 2739157650 2738541358 Bacteria 5932299
273 2739209742 2738543006 Bacteria 5904091
274 2739229896 2738543010 Bacteria 5583595
275 2739270700 2738543017 Bacteria 4271950
276 2753808516 2751185905 Bacteria 6142767
277 2757568692 2757320391 Bacteria 4746095
278 2777763684 2775507177 Bacteria 4384303
279 2777836430 2775507192 Bacteria 4622234
280 2808869720 2808606364 Bacteria 4465927
281 2809056175 2808606399 Bacteria 4021018
282 2812317067 2811994870 Bacteria 3776934
283 2819568773 2818991441 Bacteria 5062707
284 2819581476 2818991443 Bacteria 6598732
285 2819709015 2818991465 Bacteria 5388835
286 2819724147 2818991468 Bacteria 3723169
287 2823529025 2823526263 Bacteria 3765752
288 2842884745 2842882022 Bacteria 6158489
289 2852675956 2852673933 Bacteria 3347676
290 2857476695 2857472729 Bacteria 6568124
291 2857589134 2857586860 Bacteria 4354574
292 2857610555 2857609550 Bacteria 3753890
293 2860840573 2860837431 Bacteria 4202080
294 2865001108 2864997549 Bacteria 5139696
295 2877771486 2877768649 Bacteria 3957164
296 2880172344 2880169592 Bacteria 3900066
297 2881648470 2881644220 Bacteria 5302661
298 2897112620 2897109615 Bacteria 4009619
299 2904524225 2904524088 Bacteria 5887454
300 2904564386 2904560550 Bacteria 4029838
301 2904599433 2904595352 Bacteria 6124848
302 2908667760 2908665501 Bacteria 3678115
303 2916975041 2916971899 Bacteria 4250608
304 2919095555 2919093281 Bacteria 3660974
305 2919147198 2919143609 Bacteria 6219228
306 2919417642 2919414237 Bacteria 5429133
307 2919519102 2919517244 Bacteria 5858162
308 2919723471 2919720352 Bacteria 5986006
309 2919728737 2919726948 Bacteria 3696050
310 2928096003 2928093941 Bacteria 5965005
311 2928514406 2928510474 Bacteria 4815308
312 2929006626 2929004312 Bacteria 5678476
313 2929238266 2929233124 Bacteria 5948380
314 2936342751 2936340661 Bacteria 5139038
315 2936362086 2936361878 Bacteria 5632809
316 2938922458 2938917290 Bacteria 5914775
317 2939706057 2939702853 Bacteria 5139229
318 2947431350 2947426588 Bacteria 5357194
319 2954773426 2954773129 Bacteria 3741715
320 2956897690 2956897341 Bacteria 5447711
321 2960319622 2960319331 Bacteria 5502575
322 2960381167 2960375949 Bacteria 5361395
323 2962293784 2962290636 Bacteria 4072939
324 2964379331 2964375228 Bacteria 4909004
325 2965765904 2965761152 Bacteria 5806513
326 2969139778 2969136845 Bacteria 3923176
327 2969143934 2969141011 Bacteria 4118468
328 2969769741 2969765954 Bacteria 4216713
329 2969772817 2969770375 Bacteria 4271280
330 2971896150 2971893375 Bacteria 3929648
331 2977256325 2977254563 Bacteria 4828420
332 2979088252 2979083700 Bacteria 5894929
333 2980495567 2980492589 Bacteria 4072961
334 2990277203 2990275345 Bacteria 4887158
335 3001268698 3001267043 Bacteria 4823521
336 3001274160 3001272096 Bacteria 4729684
337 3001897510 3001892409 Bacteria 6328293
338 3006829413 3006826541 Bacteria 4678913
339 3006882250 3006879489 Bacteria 4064221
340 3006971906 3006969106 Bacteria 4739423
341 3006976197 3006973921 Bacteria 4423788
342 3006982138 3006978542 Bacteria 5328100
343 3006984266 3006984091 Bacteria 4207523
344 3006988668 3006988479 Bacteria 4767936
345 648169513 648028048 Bacteria 5394884
346 8022632217 8022630665 Bacteria 3886130
347 8022654744 8022653035 Bacteria 4035078
348 8022798016 8022792930 Bacteria 5693794
349 8022898449 8022893055 Bacteria 5300455
350 8022917599 8022914991 Bacteria 5584517
351 8022950104 8022948649 Bacteria 5366783
352 8023443717 8023438354 Bacteria 5779374
353 8023445461 8023444577 Bacteria 5661597
354 8051954879 8051952484 Bacteria 3926774
355 8052176403 8052174270 Bacteria 3881265
356 8054280880 8054280661 Bacteria 4232245
357 8057587015 8057582654 Bacteria 5218944
358 8057635724 8057632132 Bacteria 4726859
359 Ga0307416_100106972
360 JGI25151J46595_10000533
361 JGI25151J46595_10012585
362 JGI25151J46595_10017117
363 rootH1_10005765
364 rootL2_10013974
365 Ga0006562J51391_1000740
366 Ga0006562J51391_1001378
367 Ga0006562J51391_1003298
368 Ga0006562J51391_1004995
369 Ga0006562J51391_1006451
370 Ga0055532_1000187
371 Ga0055528_1008226
372 Ga0070676_10018040
373 Ga0070670_100088596
374 Ga0070669_100046269
375 Ga0070675_100091068
376 Ga0070673_100032846
377 Ga0070700_100016412
378 Ga0070708_100158286
379 Ga0068867_100032385
380 Ga0068867_100125032
381 Ga0068859_100173876
382 Ga0068865_100077082
383 Ga0097620_100173878
384 Ga0111539_10290737
385 Ga0105245_10004160
386 Ga0105245_10036929
387 Ga0105247_10007686
388 Ga0114129_10042212
389 Ga0105242_10005368
390 Ga0105239_10048356
391 Ga0105246_10003911
392 Ga0157371_10004713
393 Ga0157378_10001003
394 Ga0157376_10080045
395 Ga0209566_100259
396 Ga0209147_100058
397 Ga0209147_100262
398 Ga0209147_101281
399 Ga0209673_1003187
400 Ga0209130_1002918
401 Ga0209675_1015788
402 Ga0209676_1006577
403 Ga0209025_1000001
404 Ga0209025_1000273
405 Ga0209025_1000347
406 Ga0209025_1000567
407 Ga0209025_1000941
408 Ga0209025_1002572
409 Ga0209025_1020953
410 Ga0207696_1002210
411 Ga0207655_1003608
412 Ga0207713_1000727
413 Ga0207642_10062187
414 Ga0207709_10010977
415 Ga0207691_10009756
416 Ga0207668_10052916
417 Ga0207677_10162167
418 Ga0207708_10034575
419 Ga0207648_10116980
420 Ga0207683_10053401
421 Ga0209973_1001322
422 Ga0209371_1002334
423 Ga0209983_1009194
424 Ga0268266_10125548
425 Ga0268264_10025480
426 Ga0237817_10110
427 Ga0268256_1002074
428 Ga0265760_10009442
429 Ga0307408_100008506
430 Ga0316575_10009029
431 Ga0316575_10027696
432 Ga0316575_10036737
433 Ga0316575_10041405
434 Ga0316579_10001495
435 Ga0316576_10023331
436 Ga0316576_10084380
437 Ga0316576_10095162
438 Ga0316576_10106256
439 Ga0316578_10009448
440 Ga0316578_10022851
441 Ga0316578_10088603
442 Ga0316577_10002533
443 Ga0316577_10002598
444 Ga0316577_10015385
445 Ga0316577_10126791
446 Ga0307409_100039607
447 Ga0307416_100056381
448 Ga0316580_10021542
449 Ga0316593_10022591
450 Ga0316593_10025634
451 Ga0316593_10044965
452 Ga0316592_1019089
453 Ga0316592_1022585
454 Ga0316596_1014029
455 Ga0316596_1032390
456 Ga0316574_0003050
457 Ga0316574_0006574
458 Ga0316574_0048436
459 Ga0316574_0066611
460 Ga0316574_0074787
461 Ga0373935_0015589
462 Ga0316582_0003335
463 Ga0316582_0014447
464 Ga0316582_0054815
465 Ga0316582_0082670
466 Ga0316582_0095626
467 Ga0316584_0001476
468 Ga0316584_0006973
469 Ga0316584_0033943
470 Ga0316584_0064697
471 Ga0373925_0215330
472 Ga0395905_0170668
473 Ga0316581_0031029
474 Ga0237819_00934
475 Ga0400483_278553
476 Ga0451577_0002796
477 Ga0451577_0024352
478 Ga0451577_0070458
479 Ga0453684_0000770
480 Ga0453684_0012679
481 Ga0453684_0021872
482 Ga0453684_0215452
483 Ga0453684_0223887
484 Ga0453684_0328353
485 Ga0466967_0000077
486 Ga0495603_0097054
487 Ga0495582_0004232
488 Ga0495584_0015554
489 Ga0495585_0011073
490 Ga0495607_0099001
491 Ga0495622_0020097
492 Ga0495622_0054561
493 Ga0495661_0026091
494 Ga0495658_0000893
495 Ga0495649_0031712
496 Ga0495683_0008780
497 Ga0496100_0011857
498 Ga0496102_0009455
499 Ga0496102_0070486
500 Ga0496103_0005271
501 Ga0496104_0003934
502 Ga0496105_0001833
503 Ga0496106_0000224
504 Ga0496107_0000983
505 Ga0496108_0006315
506 Ga0496109_0002078
507 Ga0496110_0009718
508 Ga0496111_0006464
509 Ga0496112_0028005
510 Ga0496112_0039399
511 Ga0496113_0004622
512 Ga0496116_0003619
513 Ga0496117_0041616
514 Ga0496120_0017688
515 Ga0496124_0089909
516 Ga0496125_0008620
517 Ga0496126_0025464
518 Ga0501306_001940
519 Ga0501308_000836
520 Ga0501341_00045
521 Ga0501341_00113
522 Ga0501343_000075
523 Ga0501343_000088
524 Ga0501343_000326
525 Ga0501343_001257
526 Ga0501344_00019
527 Ga0501344_00033
528 Ga0501345_00012
529 Ga0501345_00020
530 Ga0501304_000376
531 Ga0501305_000097
532 Ga0501305_000226
533 Ga0501305_000246
534 Ga0501305_000380
535 Ga0501305_001044
536 Ga0501307_003576
537 Ga0501311_000191
538 Ga0501311_000255
539 Ga0501311_000332
540 Ga0501312_000190
541 Ga0501312_000219
542 Ga0501312_000583
543 Ga0501313_000097
544 Ga0501313_000425
545 Ga0501313_000447
546 Ga0501315_000150
547 Ga0501315_000165
548 Ga0501315_000211
549 Ga0501315_000212
550 Ga0501315_000222
551 Ga0501315_000956
552 Ga0501315_006519
553 Ga0501316_000156
554 Ga0501316_000193
555 Ga0501316_000211
556 Ga0501316_002251
557 Ga0501316_003388
558 Ga0501317_000122
559 Ga0501317_000180
560 Ga0501317_000197
561 Ga0501317_000220
562 Ga0501318_000140
563 Ga0501318_000172
564 Ga0501318_000192
565 Ga0501318_000936
566 Ga0501320_001628
567 Ga0501321_000179
568 Ga0501321_000232
569 Ga0501323_000188
570 Ga0501323_000211
571 Ga0501323_000385
572 Ga0501324_000126
573 Ga0501324_000215
574 Ga0501325_000101
575 Ga0501327_00109
576 Ga0501330_000031
577 Ga0501331_00036
578 Ga0501332_00054
579 Ga0501332_00081
580 Ga0501333_000098
581 Ga0501333_000145
582 Ga0501333_000910
583 Ga0501334_00064
584 Ga0501335_000093
585 Ga0501335_000150
586 Ga0501335_000184
587 Ga0501335_000361
588 Ga0501336_000026
589 Ga0501336_000049
590 Ga0501336_000374
591 Ga0501337_000077
592 Ga0501338_00052
593 Ga0501338_00135
594 Ga0501340_000065
595 Ga0501340_000096
596 Ga0501340_000118
597 Ga0501067_0020029
598 Ga0501073_0018630
599 nmdc:mga05p37_58976_c1
600 Ga0501084_0003488
601 Ga0501084_0108359
602 2511700584
603 2540607798
604 2545557282
605 2553396383
606 2555469859
607 2578931545
608 2595090731
609 2600198401
610 2631984517
611 2644706427
612 2644713108
613 2644715547
614 2644726851
615 2644741452
616 2651532695
617 2674418589
618 2685152561
619 2686997872
620 2687499212
621 2695628578
622 2698320609
623 2705996484
624 2717915729
625 2721507719
626 2730139175
627 2738815483
628 2738838299
629 2739157650
630 2739209742
631 2739229896
632 2739270700
633 2753808516
634 2757568692
635 2777763684
636 2777836430
637 2808869720
638 2809056175
639 2812317067
640 2819568773
641 2819581476
642 2819709015
643 2819724147
644 2823529025
645 2842884745
646 2852675956
647 2857476695
648 2857589134
649 2857610555
650 2860840573
651 2865001108
652 2877771486
653 2880172344
654 2881648470
655 2897112620
656 2904524225
657 2904564386
658 2904599433
659 2908667760
660 2916975041
661 2919095555
662 2919147198
663 2919417642
664 2919519102
665 2919723471
666 2919728737
667 2928096003
668 2928514406
669 2929006626
670 2929238266
671 2936342751
672 2936362086
673 2938922458
674 2939706057
675 2947431350
676 2954773426
677 2956897690
678 2960319622
679 2960381167
680 2962293784
681 2964379331
682 2965765904
683 2969139778
684 2969143934
685 2969769741
686 2969772817
687 2971896150
688 2977256325
689 2979088252
690 2980495567
691 2990277203
692 3001268698
693 3001274160
694 3001897510
695 3006829413
696 3006882250
697 3006971906
698 3006976197
699 3006982138
700 3006984266
701 3006988668
702 648169513
703 8022632217
704 8022654744
705 8022798016
706 8022898449
707 8022917599
708 8022950104
709 8023443717
710 8023445461
711 8051954879
712 8052176403
713 8054280880
714 8057587015
715 8057635724

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00180

Iso_dh

Isocitrate/isopropylmalate dehydrogenase

51

448

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
1hqs-assembly1.cif.gz_B crystal structure of isocitrate dehydrogenase from bacillus subtilis 0.9516 2 422
1hqs-assembly1.cif.gz_B crystal structure of isocitrate dehydrogenase from bacillus subtilis 0.9451 2 422
2d4v-assembly2.cif.gz_C crystal structure of nad dependent isocitrate dehydrogenase from acidithiobacillus thiooxidans 0.9392 2 419
1xkd-assembly1.cif.gz_B ternary complex of isocitrate dehydrogenase from the hyperthermophile aeropyrum pernix 0.9262 3 426
2d4v-assembly2.cif.gz_C crystal structure of nad dependent isocitrate dehydrogenase from acidithiobacillus thiooxidans 0.9201 2 419
ID Description Score Start End Superfamily
1xgvB00 Alpha Beta;3-Layer(aba) Sandwich;Isopropylmalate Dehydrogenase;Isopropylmalate Dehydrogenase 0.913 3 421 3.40.718.10
6c0eA00 Alpha Beta;3-Layer(aba) Sandwich;Isopropylmalate Dehydrogenase;Isopropylmalate Dehydrogenase 0.902 2 421 3.40.718.10
af_Q9W172_55_391_3.40.718.10 Alpha Beta;3-Layer(aba) Sandwich;Isopropylmalate Dehydrogenase;Isopropylmalate Dehydrogenase 0.8816 20 420 3.40.718.10
6c0eA00 Alpha Beta;3-Layer(aba) Sandwich;Isopropylmalate Dehydrogenase;Isopropylmalate Dehydrogenase 0.8773 2 421 3.40.718.10
1x0lB00 Alpha Beta;3-Layer(aba) Sandwich;Isopropylmalate Dehydrogenase;Isopropylmalate Dehydrogenase 0.8644 20 424 3.40.718.10
ID Description Score Start End GO Terms
AF-A0A4R9VF08-F1-model_v4 isocitrate dehydrogenase (NADP(+)) (EC 1.1.1.42) 0.9882 205 298 GO:0004450
GO:0006099
GO:0046872
AF-A0A2G9SSX6-F1-model_v4 isocitrate dehydrogenase (NADP(+)) (EC 1.1.1.42) 0.9709 323 420 GO:0004450
GO:0006099
GO:0046872
AF-A0A2M7D0N8-F1-model_v4 isocitrate dehydrogenase (NADP(+)) (EC 1.1.1.42) 0.9698 323 421 GO:0004450
GO:0006099
GO:0046872
AF-A0A7V6XPL2-F1-model_v4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) (IDP) (NADP(+)-specific ICDH) (Oxalosuccinate decarboxylase) 0.9656 195 420 GO:0000287
GO:0004450
GO:0006097
GO:0006099
GO:0051287
AF-A0A3C1KI96-F1-model_v4 isocitrate dehydrogenase (NADP(+)) (EC 1.1.1.42) 0.9632 156 244 GO:0004450
GO:0006099
GO:0046872

Map