F419558

General Info

Members Datasets Scaffolds Average Seq Length
353 187 636 398

Family's Representative Sequence

Representative Sequence 3300053096|Ga0500641_0002293|Ga0500641_0002293_231_1610
Length 459
Sequence LKGRRFRRPFLWALSRCSIENLYIAARVFSFPAQQIQAILALQIKKTQEDALRTNRRKFLGGVSTAAVLSASGVSFAQGDKKYSDGASDTEIKIGHTNPYSGPASAYGVIGKTIQAYWKSVNEAGGINGRKVNFITLDDGYNPSKTVELVRQLVEQDKVLCTFNTLGTPTNTAIHKYMNQKKVPMLYVATGASKWGKPKEFPWTMGYQPDYHTEGVIYAKHILANVKDAKIGVLMQNDDYGKDYYEGFKEGLGKDAGMIVKHVSYETTDPTVDSQVIQLKDSGANVFFNIAIPKFAAQAMRKAGDINWKPVQYLNNVSSSVASTMKPAGFENGQGVVTAQYLMDPTDKQWDSNADMKAWVAWMGKYNAGASLQDASNVFAYSVASLMHETLKKCGNDLTRDNLMKQAANFQKFRLPLLLPGITVSTSPTDYYPIQAVQLSRFKGETWDLFGDVMHAEST

Samples

Sample ID Description Type Environment
1 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
5 3300004800 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
6 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
35 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
36 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
37 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
38 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
39 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
40 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
41 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
42 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
43 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
44 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
45 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
46 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
50 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
51 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
52 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
53 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
54 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
55 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
56 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
57 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
58 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
59 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
60 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
61 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
62 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
63 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
64 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
65 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
66 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
67 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
68 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
103 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
104 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
105 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
106 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
107 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
108 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
109 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
110 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
111 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
112 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
113 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
114 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
115 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
116 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
117 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
118 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
119 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
120 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
121 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
122 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
123 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
124 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
125 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
126 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
127 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
128 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
129 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
130 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
131 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
132 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
133 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
134 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
135 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
136 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
137 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
138 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
139 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
147 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
148 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
149 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
150 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
151 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
152 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
153 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
154 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
155 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
156 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
157 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
158 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
159 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
160 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
161 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
162 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
163 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
164 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
165 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere
166 3300053733 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 endosphere Metagenome Endosphere
167 3300059477 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 50R_CW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
168 3300059491 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 12R_AW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
169 3300059508 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 53R_CD_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
170 3300059626 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 173R_CD_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
171 3300059630 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 165R_SD_T3_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
172 3300059644 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 38R_AD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
173 3300059647 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 43R_SW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
174 2667528175 Rhizobium tropici NFR14 Isolate Rhizoplane
175 2791355197 Bradyrhizobium sp. C9 Isolate Nodule
176 2791355199
177 2874604998 Bradyrhizobium sp. LMTR 3 Isolate Nodule
178 2885374607 Bradyrhizobium sp. NAS96.2 Isolate Unclassified
179 2885409591 Bradyrhizobium sp. NAS80.1 Isolate Unclassified
180 2889033259 Bradyrhizobium sp. CCBAU 051011 Isolate Unclassified
181 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
182 2906610324
183 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
184 2922425934
185 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
186 8006984368 Bradyrhizobium sp. SRL28 Isolate Unclassified
187 8019565922 Bradyrhizobium sp. JR3.5 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 92.57
Metatranscriptomes 4.29
Isolates 3.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.71
Nodule 1.7
Rhizoplane 0.28
Rhizosphere 75.64
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500641_0002293 3300053096 Bacteria 6789
2 JGI24737J22298_10001240 3300001990 Bacteria 9018
3 JGI24735J21928_10017488 3300002067 Bacteria 2217
4 JGI25405J52794_10013558 3300003911 Bacteria 1583
5 Ga0058861_12069722 3300004800 Bacteria 1547
6 Ga0065165_1001628 3300005262 Bacteria 22844
7 Ga0070683_100049448 3300005329 Bacteria 3889
8 Ga0068869_100153577 3300005334 Bacteria 1787
9 Ga0070660_100224078 3300005339 Bacteria 1529
10 Ga0070689_100156415 3300005340 Bacteria 1840
11 Ga0070689_100157236 3300005340 Bacteria 1836
12 Ga0070661_100016548 3300005344 Bacteria 5216
13 Ga0070661_100110905 3300005344 Bacteria 2048
14 Ga0070669_100134148 3300005353 Bacteria 1903
15 Ga0070675_100069584 3300005354 Bacteria 2916
16 Ga0070659_100181088 3300005366 Bacteria 1729
17 Ga0070667_100057666 3300005367 Bacteria 3283
18 Ga0070713_100055556 3300005436 Bacteria 3291
19 Ga0070708_100056843 3300005445 Bacteria 3481
20 Ga0070706_100082216 3300005467 Bacteria 2983
21 Ga0070706_100309461 3300005467 Bacteria 1474
22 Ga0070698_100004357 3300005471 Bacteria 15558
23 Ga0070684_100019761 3300005535 Bacteria 5577
24 Ga0070684_100109280 3300005535 Bacteria 2478
25 Ga0070697_100014172 3300005536 Bacteria 6262
26 Ga0068853_100015114 3300005539 Bacteria 6346
27 Ga0068853_100189597 3300005539 Bacteria 1868
28 Ga0070665_100040871 3300005548 Bacteria 4660
29 Ga0070665_100191914 3300005548 Bacteria 2043
30 Ga0068855_100001997 3300005563 Bacteria 25334
31 Ga0068855_100082486 3300005563 Bacteria 3726
32 Ga0068855_100124742 3300005563 Bacteria 2945
33 Ga0068855_100216183 3300005563 Bacteria 2151
34 Ga0070664_100010509 3300005564 Bacteria 7501
35 Ga0070664_100063967 3300005564 Bacteria 3137
36 Ga0068857_100000503 3300005577 Bacteria 28036
37 Ga0068857_100016673 3300005577 Bacteria 6436
38 Ga0068857_100051335 3300005577 Bacteria 3658
39 Ga0068854_100001490 3300005578 Bacteria 14174
40 Ga0068854_100012147 3300005578 Bacteria 5633
41 Ga0068856_100011233 3300005614 Bacteria 8692
42 Ga0068856_100016678 3300005614 Bacteria 7114
43 Ga0068856_100050009 3300005614 Bacteria 4120
44 Ga0068856_100074056 3300005614 Bacteria 3371
45 Ga0068852_100015388 3300005616 Bacteria 5931
46 Ga0068852_100017270 3300005616 Bacteria 5657
47 Ga0068852_100085718 3300005616 Bacteria 2806
48 Ga0068852_100334535 3300005616 Bacteria 1474
49 Ga0068859_100128642 3300005617 Bacteria 2603
50 Ga0068870_10091290 3300005840 Bacteria 1703
51 Ga0068863_100077647 3300005841 Bacteria 3143
52 Ga0068860_100092673 3300005843 Bacteria 2879
53 Ga0068862_100316184 3300005844 Bacteria 1440
54 Ga0081455_10000116 3300005937 Bacteria 91321
55 Ga0081455_10002613 3300005937 Bacteria 21347
56 Ga0081455_10002770 3300005937 Bacteria 20653
57 Ga0081455_10003249 3300005937 Bacteria 18825
58 Ga0081455_10005928 3300005937 Bacteria 13263
59 Ga0081455_10012998 3300005937 Bacteria 8253
60 Ga0081455_10026741 3300005937 Bacteria 5298
61 Ga0081538_10049247 3300005981 Bacteria 2557
62 Ga0081540_1041983 3300005983 Bacteria 2364
63 Ga0081539_10003317 3300005985 Bacteria 20104
64 Ga0081539_10007378 3300005985 Bacteria 10054
65 Ga0081539_10041394 3300005985 Bacteria 2693
66 Ga0075365_10042458 3300006038 Bacteria 2973
67 Ga0075365_10155188 3300006038 Bacteria 1593
68 Ga0075368_10016132 3300006042 Bacteria 2781
69 Ga0075362_10001339 3300006177 Bacteria 7796
70 Ga0075362_10019507 3300006177 Bacteria 2821
71 Ga0075362_10023266 3300006177 Bacteria 2619
72 Ga0075362_10042485 3300006177 Bacteria 2009
73 Ga0075367_10058626 3300006178 Bacteria 2291
74 Ga0075367_10087750 3300006178 Bacteria 1889
75 Ga0075369_10001734 3300006186 Bacteria 7544
76 Ga0075366_10000633 3300006195 Bacteria 16535
77 Ga0075366_10047275 3300006195 Bacteria 2550
78 Ga0075366_10084684 3300006195 Bacteria 1895
79 Ga0075366_10094466 3300006195 Bacteria 1792
80 Ga0075370_10002412 3300006353 Bacteria 8657
81 Ga0075370_10018613 3300006353 Bacteria 3769
82 Ga0097620_100128656 3300006931 Bacteria 2603
83 Ga0105240_10004176 3300009093 Bacteria 22131
84 Ga0105240_10004659 3300009093 Bacteria 20760
85 Ga0105240_10032303 3300009093 Bacteria 6779
86 Ga0105240_10143720 3300009093 Bacteria 2849
87 Ga0105240_10247731 3300009093 Bacteria 2062
88 Ga0105240_10536703 3300009093 Bacteria 1296
89 Ga0105243_10291587 3300009148 Bacteria 1474
90 Ga0105241_10020501 3300009174 Bacteria 4884
91 Ga0105248_10390807 3300009177 Bacteria 1566
92 Ga0105237_10001391 3300009545 Bacteria 31961
93 Ga0105237_10063326 3300009545 Bacteria 3696
94 Ga0105238_10012207 3300009551 Bacteria 8660
95 Ga0099796_10043395 3300010159 Bacteria 1531
96 Ga0105239_10014135 3300010375 Bacteria 8859
97 Ga0105239_10023875 3300010375 Bacteria 6734
98 Ga0157371_10075968 3300013102 Bacteria 2379
99 Ga0157371_10077120 3300013102 Bacteria 2360
100 Ga0157370_10012717 3300013104 Bacteria 8711
101 Ga0157370_10087738 3300013104 Bacteria 2922
102 Ga0157370_10119126 3300013104 Bacteria 2465
103 Ga0157370_10248410 3300013104 Bacteria 1646
104 Ga0157369_10040388 3300013105 Bacteria 5093
105 Ga0157369_10108831 3300013105 Bacteria 2947
106 Ga0157369_10111541 3300013105 Bacteria 2906
107 Ga0157374_10173369 3300013296 Bacteria 2105
108 Ga0157378_10105865 3300013297 Bacteria 2572
109 Ga0157372_10315879 3300013307 Bacteria 1819
110 Ga0157372_10356203 3300013307 Bacteria 1705
111 Ga0157372_10437540 3300013307 Bacteria 1524
112 Ga0157375_10486126 3300013308 Bacteria 1399
113 Ga0206356_10477922 3300020070 Bacteria 1935
114 Ga0206356_10632212 3300020070 Bacteria 1775
115 Ga0213872_10035472 3300021361 Bacteria 2281
116 Ga0213876_10010279 3300021384 Bacteria 5026
117 Ga0213871_10012504 3300021441 Bacteria 1974
118 Ga0213871_10019489 3300021441 Bacteria 1671
119 Ga0224712_10053123 3300022467 Bacteria 1585
120 Ga0207426_1000768 3300025302 Bacteria 35650
121 Ga0207426_1034216 3300025302 Bacteria 1632
122 Ga0207656_10098578 3300025321 Bacteria 1337
123 Ga0207647_10001516 3300025904 Bacteria 17853
124 Ga0207647_10041555 3300025904 Bacteria 2890
125 Ga0207647_10105062 3300025904 Bacteria 1673
126 Ga0207699_10105671 3300025906 Bacteria 1795
127 Ga0207645_10093199 3300025907 Bacteria 1938
128 Ga0207705_10035483 3300025909 Bacteria 3567
129 Ga0207684_10107605 3300025910 Bacteria 2386
130 Ga0207707_10022158 3300025912 Bacteria 5553
131 Ga0207695_10000062 3300025913 Bacteria 351979
132 Ga0207695_10099987 3300025913 Bacteria 2897
133 Ga0207671_10001205 3300025914 Bacteria 30737
134 Ga0207663_10099152 3300025916 Bacteria 1952
135 Ga0207660_10029390 3300025917 Bacteria 3770
136 Ga0207657_10138395 3300025919 Bacteria 1991
137 Ga0207649_10066136 3300025920 Bacteria 2290
138 Ga0207649_10101220 3300025920 Bacteria 1907
139 Ga0207649_10148638 3300025920 Bacteria 1611
140 Ga0207681_10255775 3300025923 Bacteria 1369
141 Ga0207694_10014833 3300025924 Bacteria 5876
142 Ga0207694_10167086 3300025924 Bacteria 1780
143 Ga0207694_10201563 3300025924 Bacteria 1619
144 Ga0207659_10107591 3300025926 Bacteria 2114
145 Ga0207700_10030727 3300025928 Bacteria 3808
146 Ga0207700_10050281 3300025928 Bacteria 3106
147 Ga0207706_10027216 3300025933 Bacteria 5114
148 Ga0207706_10083505 3300025933 Bacteria 2808
149 Ga0207709_10127175 3300025935 Bacteria 1730
150 Ga0207669_10049194 3300025937 Bacteria 2511
151 Ga0207691_10157935 3300025940 Bacteria 1990
152 Ga0207661_10030864 3300025944 Bacteria 4132
153 Ga0207661_10055894 3300025944 Bacteria 3167
154 Ga0207679_10025236 3300025945 Bacteria 4085
155 Ga0207679_10049198 3300025945 Bacteria 3074
156 Ga0207667_10004944 3300025949 Bacteria 16277
157 Ga0207667_10079169 3300025949 Bacteria 3406
158 Ga0207667_10097399 3300025949 Bacteria 3036
159 Ga0207640_10230435 3300025981 Bacteria 1425
160 Ga0207658_10137044 3300025986 Bacteria 1975
161 Ga0207678_10277680 3300026067 Bacteria 1437
162 Ga0207702_10021045 3300026078 Bacteria 5397
163 Ga0207702_10025696 3300026078 Bacteria 4888
164 Ga0207702_10079626 3300026078 Bacteria 2840
165 Ga0207702_10231910 3300026078 Bacteria 1726
166 Ga0207641_10224079 3300026088 Bacteria 1745
167 Ga0207676_10226386 3300026095 Bacteria 1669
168 Ga0207674_10001955 3300026116 Bacteria 26110
169 Ga0207674_10004337 3300026116 Bacteria 17113
170 Ga0207674_10017633 3300026116 Bacteria 7786
171 Ga0207674_10074166 3300026116 Bacteria 3415
172 Ga0207674_10076965 3300026116 Bacteria 3343
173 Ga0207674_10156352 3300026116 Bacteria 2235
174 Ga0207698_10008257 3300026142 Bacteria 6572
175 Ga0207698_10060866 3300026142 Bacteria 2938
176 Ga0207698_10073858 3300026142 Bacteria 2717
177 Ga0207698_10089296 3300026142 Bacteria 2516
178 Ga0268266_10011563 3300028379 Bacteria 7662
179 Ga0268266_10165846 3300028379 Bacteria 2001
180 Ga0268265_10196688 3300028380 Bacteria 1745
181 Ga0265334_10040847 3300028573 Bacteria 1815
182 Ga0307515_10232647 3300028794 Bacteria 1631
183 Ga0265340_10036600 3300031247 Bacteria 2432
184 Ga0307513_10010386 3300031456 Bacteria 11673
185 Ga0307416_100111162 3300032002 Bacteria 2415
186 Ga0307415_100079395 3300032126 Bacteria 2337
187 Ga0373942_0029876 3300035207 Bacteria 1433
188 Ga0373931_0026154 3300035691 Bacteria 2967
189 Ga0373931_0028220 3300035691 Bacteria 2871
190 Ga0373927_0136386 3300035695 Bacteria 1604
191 Ga0373933_0016156 3300035724 Bacteria 4171
192 Ga0373937_0077493 3300036401 Bacteria 3072
193 Ga0373925_0229197 3300037068 Bacteria 1485
194 Ga0395899_0008604 3300037312 Bacteria 7854
195 Ga0395899_0014457 3300037312 Bacteria 6024
196 Ga0395899_0020788 3300037312 Bacteria 4977
197 Ga0395899_0046669 3300037312 Bacteria 3226
198 Ga0395899_0126298 3300037312 Bacteria 1829
199 Ga0395900_0003749 3300037418 Bacteria 16330
200 Ga0395900_0027598 3300037418 Bacteria 5815
201 Ga0395900_0029451 3300037418 Bacteria 5631
202 Ga0395900_0056565 3300037418 Bacteria 4037
203 Ga0395900_0122191 3300037418 Bacteria 2671
204 Ga0395898_0006041 3300037466 Bacteria 13000
205 Ga0395898_0022002 3300037466 Bacteria 6458
206 Ga0395898_0097736 3300037466 Bacteria 2820
207 Ga0395905_0022222 3300037471 Bacteria 6002
208 Ga0395901_0001801 3300038443 Bacteria 22128
209 Ga0395901_0003186 3300038443 Bacteria 16510
210 Ga0395901_0006175 3300038443 Bacteria 12140
211 Ga0395901_0029933 3300038443 Bacteria 5608
212 Ga0395901_0033712 3300038443 Bacteria 5286
213 Ga0395901_0060405 3300038443 Bacteria 3944
214 Ga0395901_0099671 3300038443 Bacteria 3046
215 Ga0395901_0157347 3300038443 Bacteria 2386
216 Ga0436365_0163440 3300039437 Bacteria 6307
217 Ga0436365_1277565 3300039437 Bacteria 3456
218 Ga0436360_0538251 3300039438 Bacteria 15887
219 Ga0436361_0500413 3300039447 Bacteria 2647
220 Ga0436361_0941749 3300039447 Bacteria 2729
221 Ga0450911_001143 3300042115 Bacteria 6561
222 Ga0466963_0025570 3300044694 Bacteria 3767
223 Ga0466963_0193740 3300044694 Bacteria 1420
224 Ga0466964_0038321 3300044706 Bacteria 1927
225 Ga0466957_0012955 3300044842 Bacteria 4831
226 Ga0466967_0005104 3300045976 Bacteria 9018
227 Ga0466967_0044089 3300045976 Bacteria 3866
228 Ga0495664_0031757 3300046477 Bacteria 3096
229 Ga0495608_0052055 3300046511 Bacteria 2711
230 Ga0495652_0018225 3300046529 Bacteria 6263
231 Ga0495645_0011916 3300046543 Bacteria 6125
232 Ga0495600_0140825 3300046809 Bacteria 1565
233 Ga0495581_0028917 3300047315 Bacteria 3214
234 Ga0495604_0030742 3300047317 Bacteria 4263
235 Ga0495674_0021180 3300047319 Bacteria 6014
236 Ga0495675_0003379 3300047444 Bacteria 9617
237 Ga0495602_0000223 3300048088 Bacteria 52927
238 Ga0496125_0004911 3300048928 Bacteria 15140
239 Ga0496125_0094966 3300048928 Bacteria 2219
240 Ga0496126_0022573 3300048929 Bacteria 6118
241 Ga0496126_0083222 3300048929 Bacteria 2825
242 Ga0501031_0227626 3300049568 Bacteria 1214
243 Ga0501033_0092976 3300049570 Bacteria 2205
244 Ga0501034_0001717 3300049571 Bacteria 28196
245 Ga0501034_0001813 3300049571 Bacteria 27189
246 Ga0501034_0003024 3300049571 Bacteria 19456
247 Ga0501034_0003233 3300049571 Bacteria 18655
248 Ga0501034_0005006 3300049571 Bacteria 14572
249 Ga0501034_0013938 3300049571 Bacteria 8276
250 Ga0501034_0065922 3300049571 Bacteria 3635
251 Ga0501034_0114847 3300049571 Bacteria 2681
252 Ga0501034_0128884 3300049571 Bacteria 2514
253 Ga0501034_0242045 3300049571 Bacteria 1750
254 Ga0501038_0225792 3300049574 Bacteria 1492
255 Ga0501043_0188688 3300049579 Bacteria 1604
256 Ga0501046_0045808 3300049580 Bacteria 3473
257 Ga0501047_0032114 3300049581 Bacteria 5067
258 Ga0501048_0166539 3300049582 Bacteria 1561
259 Ga0501068_0006030 3300049584 Bacteria 6659
260 Ga0501068_0010392 3300049584 Bacteria 5228
261 Ga0501068_0025792 3300049584 Bacteria 3459
262 Ga0501074_0176498 3300049590 Bacteria 1525
263 Ga0501080_0093152 3300049742 Bacteria 2798
264 Ga0501044_0164180 3300049823 Bacteria 2196
265 Ga0501044_0457829 3300049823 Bacteria 1181
266 nmdc:mga03683_14963_c1 3300050489 Bacteria 2884
267 nmdc:mga03683_30245_c1 3300050489 Bacteria 2166
268 nmdc:mga03683_5969_c1 3300050489 Bacteria 4146
269 nmdc:mga03n38_68234_c1 3300050490 Bacteria 1639
270 nmdc:mga00v17_100155_c1 3300050491 Bacteria 1828
271 nmdc:mga0yw44_105181_c1 3300050492 Bacteria 1803
272 nmdc:mga0yw44_13023_c1 3300050492 Bacteria 4361
273 nmdc:mga0yw44_30893_c1 3300050492 Bacteria 3110
274 nmdc:mga0k408_100040_c1 3300050493 Bacteria 1709
275 nmdc:mga0k408_26194_c1 3300050493 Bacteria 3305
276 nmdc:mga0k408_41725_c1 3300050493 Bacteria 2642
277 nmdc:mga0k408_77299_c1 3300050493 Bacteria 1946
278 nmdc:mga06z11_9831_c1 3300050494 Bacteria 4046
279 nmdc:mga07m45_11131_c1 3300050496 Bacteria 4720
280 nmdc:mga07m45_5562_c1 3300050496 Bacteria 6287
281 nmdc:mga0sz30_14393_c1 3300050516 Bacteria 3112
282 nmdc:mga0sz30_33_c1 3300050516 Bacteria 53622
283 nmdc:mga0sz30_37222_c1 3300050516 Bacteria 2036
284 nmdc:mga0sz30_49799_c1 3300050516 Bacteria 1776
285 Ga0495601_0009404 3300053077 Bacteria 5781
286 Ga0495612_0001314 3300053078 Bacteria 10249
287 Ga0495619_0025595 3300053085 Bacteria 3791
288 Ga0500651_0059116 3300053093 Bacteria 2397
289 Ga0500651_0148165 3300053093 Bacteria 1411
290 Ga0500642_0044447 3300053130 Bacteria 1935
291 Ga0500616_0003539 3300053153 Bacteria 11845
292 Ga0500609_009561 3300053731 Bacteria 1307
293 Ga0500552_000150 3300053733 Bacteria 5966
294 Ga0587084_007210 3300059477 Bacteria 1374
295 Ga0587070_008902 3300059491 Bacteria 1436
296 Ga0587088_005332 3300059508 Bacteria 1682
297 Ga0587088_005588 3300059508 Bacteria 1660
298 Ga0587088_007283 3300059508 Bacteria 1524
299 Ga0587115_003104 3300059626 Bacteria 1720
300 Ga0587115_005493 3300059626 Bacteria 1426
301 Ga0587128_004145 3300059630 Bacteria 1661
302 Ga0587075_007512 3300059644 Bacteria 1369
303 Ga0587079_012280 3300059647 Bacteria 1397
304 Ga0587079_013448 3300059647 Bacteria 1355
305 2671119038 2667528175 Bacteria 7532676
306 2793072287 2791355197 Bacteria 8420563
307 2793078742
308 2874608891 2874604998 Bacteria 7834745
309 2885378110 2885374607 Bacteria 8927485
310 2885416595 2885409591 Bacteria 9235467
311 2889034363 2889033259 Bacteria 9099371
312 2903749741 2903748898 Bacteria 9972761
313 2906611339
314 2908744919 2908739725 Bacteria 8628932
315 2922428033
316 3005477734 3005474847 Bacteria 9259049
317 8006992134 8006984368 Bacteria 9651211
318 8019569489 8019565922 Bacteria 9639779
319 Ga0500641_0002293
320 JGI24737J22298_10001240
321 JGI24735J21928_10017488
322 JGI25405J52794_10013558
323 Ga0058861_12069722
324 Ga0065165_1001628
325 Ga0070683_100049448
326 Ga0068869_100153577
327 Ga0070660_100224078
328 Ga0070689_100156415
329 Ga0070689_100157236
330 Ga0070661_100016548
331 Ga0070661_100110905
332 Ga0070669_100134148
333 Ga0070675_100069584
334 Ga0070659_100181088
335 Ga0070667_100057666
336 Ga0070713_100055556
337 Ga0070708_100056843
338 Ga0070706_100082216
339 Ga0070706_100309461
340 Ga0070698_100004357
341 Ga0070684_100019761
342 Ga0070684_100109280
343 Ga0070697_100014172
344 Ga0068853_100015114
345 Ga0068853_100189597
346 Ga0070665_100040871
347 Ga0070665_100191914
348 Ga0068855_100001997
349 Ga0068855_100082486
350 Ga0068855_100124742
351 Ga0068855_100216183
352 Ga0070664_100010509
353 Ga0070664_100063967
354 Ga0068857_100000503
355 Ga0068857_100016673
356 Ga0068857_100051335
357 Ga0068854_100001490
358 Ga0068854_100012147
359 Ga0068856_100011233
360 Ga0068856_100016678
361 Ga0068856_100050009
362 Ga0068856_100074056
363 Ga0068852_100015388
364 Ga0068852_100017270
365 Ga0068852_100085718
366 Ga0068852_100334535
367 Ga0068859_100128642
368 Ga0068870_10091290
369 Ga0068863_100077647
370 Ga0068860_100092673
371 Ga0068862_100316184
372 Ga0081455_10000116
373 Ga0081455_10002613
374 Ga0081455_10002770
375 Ga0081455_10003249
376 Ga0081455_10005928
377 Ga0081455_10012998
378 Ga0081455_10026741
379 Ga0081538_10049247
380 Ga0081540_1041983
381 Ga0081539_10003317
382 Ga0081539_10007378
383 Ga0081539_10041394
384 Ga0075365_10042458
385 Ga0075365_10155188
386 Ga0075368_10016132
387 Ga0075362_10001339
388 Ga0075362_10019507
389 Ga0075362_10023266
390 Ga0075362_10042485
391 Ga0075367_10058626
392 Ga0075367_10087750
393 Ga0075369_10001734
394 Ga0075366_10000633
395 Ga0075366_10047275
396 Ga0075366_10084684
397 Ga0075366_10094466
398 Ga0075370_10002412
399 Ga0075370_10018613
400 Ga0097620_100128656
401 Ga0105240_10004176
402 Ga0105240_10004659
403 Ga0105240_10032303
404 Ga0105240_10143720
405 Ga0105240_10247731
406 Ga0105240_10536703
407 Ga0105243_10291587
408 Ga0105241_10020501
409 Ga0105248_10390807
410 Ga0105237_10001391
411 Ga0105237_10063326
412 Ga0105238_10012207
413 Ga0099796_10043395
414 Ga0105239_10014135
415 Ga0105239_10023875
416 Ga0157371_10075968
417 Ga0157371_10077120
418 Ga0157370_10012717
419 Ga0157370_10087738
420 Ga0157370_10119126
421 Ga0157370_10248410
422 Ga0157369_10040388
423 Ga0157369_10108831
424 Ga0157369_10111541
425 Ga0157374_10173369
426 Ga0157378_10105865
427 Ga0157372_10315879
428 Ga0157372_10356203
429 Ga0157372_10437540
430 Ga0157375_10486126
431 Ga0206356_10477922
432 Ga0206356_10632212
433 Ga0213872_10035472
434 Ga0213876_10010279
435 Ga0213871_10012504
436 Ga0213871_10019489
437 Ga0224712_10053123
438 Ga0207426_1000768
439 Ga0207426_1034216
440 Ga0207656_10098578
441 Ga0207647_10001516
442 Ga0207647_10041555
443 Ga0207647_10105062
444 Ga0207699_10105671
445 Ga0207645_10093199
446 Ga0207705_10035483
447 Ga0207684_10107605
448 Ga0207707_10022158
449 Ga0207695_10000062
450 Ga0207695_10099987
451 Ga0207671_10001205
452 Ga0207663_10099152
453 Ga0207660_10029390
454 Ga0207657_10138395
455 Ga0207649_10066136
456 Ga0207649_10101220
457 Ga0207649_10148638
458 Ga0207681_10255775
459 Ga0207694_10014833
460 Ga0207694_10167086
461 Ga0207694_10201563
462 Ga0207659_10107591
463 Ga0207700_10030727
464 Ga0207700_10050281
465 Ga0207706_10027216
466 Ga0207706_10083505
467 Ga0207709_10127175
468 Ga0207669_10049194
469 Ga0207691_10157935
470 Ga0207661_10030864
471 Ga0207661_10055894
472 Ga0207679_10025236
473 Ga0207679_10049198
474 Ga0207667_10004944
475 Ga0207667_10079169
476 Ga0207667_10097399
477 Ga0207640_10230435
478 Ga0207658_10137044
479 Ga0207678_10277680
480 Ga0207702_10021045
481 Ga0207702_10025696
482 Ga0207702_10079626
483 Ga0207702_10231910
484 Ga0207641_10224079
485 Ga0207676_10226386
486 Ga0207674_10001955
487 Ga0207674_10004337
488 Ga0207674_10017633
489 Ga0207674_10074166
490 Ga0207674_10076965
491 Ga0207674_10156352
492 Ga0207698_10008257
493 Ga0207698_10060866
494 Ga0207698_10073858
495 Ga0207698_10089296
496 Ga0268266_10011563
497 Ga0268266_10165846
498 Ga0268265_10196688
499 Ga0265334_10040847
500 Ga0307515_10232647
501 Ga0265340_10036600
502 Ga0307513_10010386
503 Ga0307416_100111162
504 Ga0307415_100079395
505 Ga0373942_0029876
506 Ga0373931_0026154
507 Ga0373931_0028220
508 Ga0373927_0136386
509 Ga0373933_0016156
510 Ga0373937_0077493
511 Ga0373925_0229197
512 Ga0395899_0008604
513 Ga0395899_0014457
514 Ga0395899_0020788
515 Ga0395899_0046669
516 Ga0395899_0126298
517 Ga0395900_0003749
518 Ga0395900_0027598
519 Ga0395900_0029451
520 Ga0395900_0056565
521 Ga0395900_0122191
522 Ga0395898_0006041
523 Ga0395898_0022002
524 Ga0395898_0097736
525 Ga0395905_0022222
526 Ga0395901_0001801
527 Ga0395901_0003186
528 Ga0395901_0006175
529 Ga0395901_0029933
530 Ga0395901_0033712
531 Ga0395901_0060405
532 Ga0395901_0099671
533 Ga0395901_0157347
534 Ga0436365_0163440
535 Ga0436365_1277565
536 Ga0436360_0538251
537 Ga0436361_0500413
538 Ga0436361_0941749
539 Ga0450911_001143
540 Ga0466963_0025570
541 Ga0466963_0193740
542 Ga0466964_0038321
543 Ga0466957_0012955
544 Ga0466967_0005104
545 Ga0466967_0044089
546 Ga0495664_0031757
547 Ga0495608_0052055
548 Ga0495652_0018225
549 Ga0495645_0011916
550 Ga0495600_0140825
551 Ga0495581_0028917
552 Ga0495604_0030742
553 Ga0495674_0021180
554 Ga0495675_0003379
555 Ga0495602_0000223
556 Ga0496125_0004911
557 Ga0496125_0094966
558 Ga0496126_0022573
559 Ga0496126_0083222
560 Ga0501031_0227626
561 Ga0501033_0092976
562 Ga0501034_0001717
563 Ga0501034_0001813
564 Ga0501034_0003024
565 Ga0501034_0003233
566 Ga0501034_0005006
567 Ga0501034_0013938
568 Ga0501034_0065922
569 Ga0501034_0114847
570 Ga0501034_0128884
571 Ga0501034_0242045
572 Ga0501038_0225792
573 Ga0501043_0188688
574 Ga0501046_0045808
575 Ga0501047_0032114
576 Ga0501048_0166539
577 Ga0501068_0006030
578 Ga0501068_0010392
579 Ga0501068_0025792
580 Ga0501074_0176498
581 Ga0501080_0093152
582 Ga0501044_0164180
583 Ga0501044_0457829
584 nmdc:mga03683_14963_c1
585 nmdc:mga03683_30245_c1
586 nmdc:mga03683_5969_c1
587 nmdc:mga03n38_68234_c1
588 nmdc:mga00v17_100155_c1
589 nmdc:mga0yw44_105181_c1
590 nmdc:mga0yw44_13023_c1
591 nmdc:mga0yw44_30893_c1
592 nmdc:mga0k408_100040_c1
593 nmdc:mga0k408_26194_c1
594 nmdc:mga0k408_41725_c1
595 nmdc:mga0k408_77299_c1
596 nmdc:mga06z11_9831_c1
597 nmdc:mga07m45_11131_c1
598 nmdc:mga07m45_5562_c1
599 nmdc:mga0sz30_14393_c1
600 nmdc:mga0sz30_33_c1
601 nmdc:mga0sz30_37222_c1
602 nmdc:mga0sz30_49799_c1
603 Ga0495601_0009404
604 Ga0495612_0001314
605 Ga0495619_0025595
606 Ga0500651_0059116
607 Ga0500651_0148165
608 Ga0500642_0044447
609 Ga0500616_0003539
610 Ga0500609_009561
611 Ga0500552_000150
612 Ga0587084_007210
613 Ga0587070_008902
614 Ga0587088_005332
615 Ga0587088_005588
616 Ga0587088_007283
617 Ga0587115_003104
618 Ga0587115_005493
619 Ga0587128_004145
620 Ga0587075_007512
621 Ga0587079_012280
622 Ga0587079_013448
623 2671119038
624 2793072287
625 2793078742
626 2874608891
627 2885378110
628 2885416595
629 2889034363
630 2903749741
631 2906611339
632 2908744919
633 2922428033
634 3005477734
635 8006992134
636 8019569489

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13458

Peripla_BP_6

Periplasmic binding protein

91

446

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
3lop-assembly1.cif.gz_A crystal structure of substrate-binding periplasmic protein (pbp) from ralstonia solanacearum 0.8962 30 389
3lop-assembly1.cif.gz_A crystal structure of substrate-binding periplasmic protein (pbp) from ralstonia solanacearum 0.8914 30 389
3lkb-assembly1.cif.gz_A crystal structure of a branched chain amino acid abc transporter from thermus thermophilus with bound valine 0.862 25 394
4eyk-assembly1.cif.gz_A crystal structure of solute binding protein of abc transporter from rhodopseudomonas palustris bisb5 in complex with 3,4-dihydroxy benzoic acid 0.8529 27 395
1qnl-assembly1.cif.gz_A amide receptor/negative regulator of the amidase operon of pseudomonas aeruginosa (amic) complexed with butyramide 0.8494 31 390
ID Description Score Start End Superfamily
4evqB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8798 148 279 3.40.50.2300
4n0qA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8758 148 280 3.40.50.2300
3td9A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8748 152 278 3.40.50.2300
af_A0A0R0JFH4_66_156_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8746 69 148 3.40.50.2300
af_Q69L07_59_152_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8582 69 148 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A4Q4CY52-F1-model_v4 Branched-chain amino acid ABC transporter substrate-binding protein 0.9744 19 395
AF-A0A7Y9RAP2-F1-model_v4 ABC-type branched-subunit amino acid transport system substrate-binding protein 0.9741 36 395
AF-A0A0Q7L0R6-F1-model_v4 Leucine-binding protein domain-containing protein 0.9695 18 396
AF-A0A1E3ED32-F1-model_v4 ABC-type branched-subunit amino acid transport system substrate-binding protein 0.9682 18 396
AF-A0A2V7D7V0-F1-model_v4 Branched-chain amino acid ABC transporter substrate-binding protein 0.9643 18 128

Map