F418796

General Info

Members Datasets Scaffolds Average Seq Length
351 224 702 222

Family's Representative Sequence

Representative Sequence 3300049570|Ga0501033_0001250|Ga0501033_0001250_21879_22622
Length 247
Sequence MTSPAFQRARSAEAKQAREAAILDAARTLGRSRGVRDVTLTDIAAAVGMHKSALLRYFETREQIFLKLTAEGWREWSAALRAELEACTHATAQEVAALIASSLATRPLFCDLLAQAPMNLERNVSVDAVRSFKLVTLDEIALIDAQLRRLLGLSETQTVDLISTATSLAGALWQMATPGPRLRELYRSDPRLGHAVVEVEPRLCRVLTAFLTGLGAGSSATSEADPAAPEHTTAGTADNGQAAGRPA

Samples

Sample ID Description Type Environment
1 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
5 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
6 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
7 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
8 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
9 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
10 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
11 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
12 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
13 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
14 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
17 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
18 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
19 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
22 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
23 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
24 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
25 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
32 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
33 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
34 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
38 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
39 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
40 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
44 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
45 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
47 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
62 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
63 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
64 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
65 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
66 3300031018 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
67 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
68 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
69 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
70 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
71 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
72 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
73 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
74 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
75 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
76 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
77 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
78 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
79 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
80 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
81 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
82 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
83 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
84 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
85 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
86 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
87 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
88 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
89 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
90 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
91 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
92 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
93 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
94 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
95 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
96 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
97 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
98 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
99 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
100 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
101 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
102 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
103 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
104 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
105 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
106 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
107 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
108 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
109 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
110 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
111 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
112 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
113 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
114 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
115 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
116 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
117 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
118 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
119 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
120 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
121 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
122 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
123 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
124 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
125 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
126 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
127 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
128 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
129 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
130 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
131 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
132 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
133 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
134 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
135 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
136 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
137 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
138 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
139 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
140 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
141 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
142 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
143 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
144 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
145 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
146 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
147 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
148 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
149 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
150 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
151 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
152 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
153 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
154 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
155 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
156 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
157 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
158 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
159 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
160 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
161 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
162 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
163 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
164 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
165 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
166 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
167 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
168 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
169 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
170 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
171 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
172 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
173 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
174 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
175 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
176 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
177 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
178 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
179 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
180 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
181 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
182 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
183 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
184 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
185 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
186 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
187 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
188 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
189 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
190 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
191 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
192 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
193 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
194 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
195 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
196 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
197 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
198 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
199 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
200 3300053734 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 endosphere Metagenome Endosphere
201 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
202 2626541554 Frankia sp. AvcI.1 Isolate Nodule
203 2643221616 Leifsonia sp. Root227 Isolate Unclassified
204 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
205 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
206 2808606448 Streptomyces sp. 193411 Isolate Unclassified
207 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
208 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
209 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
210 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
211 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
212 2928153084 Leifsonia sp. 563 Isolate Unclassified
213 2932401849 Devosia sp. 2618 Isolate Rhizosphere
214 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
215 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
216 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
217 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
218 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
219 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
220 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
221 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
222 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
223 8054913762 Frankia gtarii Agncl-10 Isolate Nodule
224 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.59
Metatranscriptomes 0.85
Isolates 6.55

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.12
Nodule 0.57
Rhizoplane 4.56
Rhizosphere 70.66
Stem 0
Stem Tuber 0.28
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501033_0001250 3300049570 Bacteria 22764
2 JGI24737J22298_10034674 3300001990 Bacteria 1564
3 JGI24735J21928_10012193 3300002067 Bacteria 2719
4 JGI24735J21928_10020071 3300002067 Bacteria 2049
5 JGI25164J39214_1000373 3300002772 Bacteria 26703
6 JGI25406J46586_10018865 3300003203 Bacteria 2824
7 JGI25165J46597_1000014 3300003214 Bacteria 390383
8 Ga0006562J51391_1034892 3300003578 Bacteria 10790
9 Ga0006562J51391_1034893 3300003578 Bacteria 7870
10 Ga0055539_1000091 3300003752 Bacteria 109254
11 Ga0055533_1000001 3300003756 Bacteria 1863437
12 Ga0055525_1000288 3300003759 Bacteria 45598
13 Ga0055541_1004763 3300003841 Bacteria 2434
14 Ga0070690_100003241 3300005330 Bacteria 8881
15 Ga0070682_100665165 3300005337 Bacteria 831
16 Ga0070709_10000368 3300005434 Bacteria 27647
17 Ga0070709_10003642 3300005434 Bacteria 8272
18 Ga0070709_10078135 3300005434 Bacteria 2153
19 Ga0070709_10340571 3300005434 Bacteria 1105
20 Ga0070714_100000271 3300005435 Bacteria 39474
21 Ga0070714_100024555 3300005435 Bacteria 4966
22 Ga0070714_100566744 3300005435 Bacteria 1088
23 Ga0070714_100728792 3300005435 Bacteria 957
24 Ga0070713_100002319 3300005436 Bacteria 12398
25 Ga0070713_100006202 3300005436 Bacteria 8267
26 Ga0070713_100049404 3300005436 Bacteria 3470
27 Ga0070713_100211084 3300005436 Bacteria 1757
28 Ga0070710_10000750 3300005437 Bacteria 15449
29 Ga0070710_10004840 3300005437 Bacteria 6367
30 Ga0070710_10153606 3300005437 Bacteria 1421
31 Ga0070711_100094298 3300005439 Bacteria 2163
32 Ga0070711_100124957 3300005439 Bacteria 1908
33 Ga0070708_100181147 3300005445 Bacteria 1969
34 Ga0070681_10477722 3300005458 Bacteria 1159
35 Ga0070706_100827502 3300005467 Bacteria 856
36 Ga0070707_100047069 3300005468 Bacteria 4128
37 Ga0070707_100232959 3300005468 Bacteria 1792
38 Ga0070698_100008476 3300005471 Bacteria 11103
39 Ga0070699_100183038 3300005518 Bacteria 1860
40 Ga0070695_100360097 3300005545 Bacteria 1092
41 Ga0070665_100237236 3300005548 Bacteria 1824
42 Ga0068855_100963185 3300005563 Bacteria 898
43 Ga0068856_100082795 3300005614 Bacteria 3185
44 Ga0081539_10000467 3300005985 Bacteria 85390
45 Ga0070717_10028193 3300006028 Bacteria 4492
46 Ga0070717_10104093 3300006028 Bacteria 2414
47 Ga0070717_10112800 3300006028 Bacteria 2320
48 Ga0070717_10124991 3300006028 Bacteria 2207
49 Ga0070717_10161614 3300006028 Bacteria 1943
50 Ga0070717_10327746 3300006028 Bacteria 1365
51 Ga0070715_10074444 3300006163 Bacteria 1526
52 Ga0070716_100006668 3300006173 Bacteria 5651
53 Ga0070716_100020871 3300006173 Bacteria 3444
54 Ga0070716_100064448 3300006173 Bacteria 2131
55 Ga0070712_100035016 3300006175 Bacteria 3406
56 Ga0070712_100405059 3300006175 Bacteria 1127
57 Ga0075362_10082295 3300006177 Bacteria 1485
58 Ga0157370_10770556 3300013104 Bacteria 876
59 Ga0157369_10119090 3300013105 Bacteria 2802
60 Ga0157376_10773392 3300014969 Bacteria 971
61 Ga0213875_10025801 3300021388 Bacteria 2797
62 Ga0228598_1015797 3300024227 Bacteria 1490
63 Ga0209566_100055 3300025225 Bacteria 210307
64 Ga0209674_100001 3300025226 Bacteria 4013750
65 Ga0209563_100001 3300025230 Bacteria 4013775
66 Ga0209563_100155 3300025230 Bacteria 64311
67 Ga0207427_100041 3300025231 Bacteria 263659
68 Ga0209437_101444 3300025233 Bacteria 5810
69 Ga0209677_100001 3300025253 Bacteria 4013787
70 Ga0209233_1000014 3300025261 Bacteria 996641
71 Ga0209455_1001275 3300025272 Bacteria 11791
72 Ga0207692_10001313 3300025898 Bacteria 9256
73 Ga0207692_10001807 3300025898 Bacteria 8114
74 Ga0207699_10004418 3300025906 Bacteria 6726
75 Ga0207699_10456606 3300025906 Bacteria 917
76 Ga0207707_10299889 3300025912 Bacteria 1390
77 Ga0207693_10046730 3300025915 Bacteria 3401
78 Ga0207693_10166293 3300025915 Bacteria 1736
79 Ga0207663_10003168 3300025916 Bacteria 8001
80 Ga0207663_10004300 3300025916 Bacteria 7070
81 Ga0207663_10102993 3300025916 Bacteria 1921
82 Ga0207663_10463262 3300025916 Bacteria 979
83 Ga0207646_10088505 3300025922 Bacteria 2771
84 Ga0207700_10004340 3300025928 Bacteria 8342
85 Ga0207700_10011358 3300025928 Bacteria 5672
86 Ga0207700_10017700 3300025928 Bacteria 4766
87 Ga0207700_10158973 3300025928 Bacteria 1875
88 Ga0207664_10000365 3300025929 Bacteria 33082
89 Ga0207664_10013663 3300025929 Bacteria 5836
90 Ga0207664_10026587 3300025929 Bacteria 4376
91 Ga0207664_10448957 3300025929 Bacteria 1151
92 Ga0207644_10087552 3300025931 Bacteria 2315
93 Ga0207665_10000899 3300025939 Bacteria 20026
94 Ga0207665_10041979 3300025939 Bacteria 3056
95 Ga0207665_10067328 3300025939 Bacteria 2439
96 Ga0207667_10755377 3300025949 Bacteria 971
97 Ga0207702_10398127 3300026078 Bacteria 1327
98 Ga0268266_10121359 3300028379 Bacteria 2326
99 Ga0307517_10001103 3300028786 Bacteria 45619
100 Ga0307517_10174252 3300028786 Bacteria 1406
101 Ga0307515_10000524 3300028794 Bacteria 91311
102 Ga0307515_10074373 3300028794 Bacteria 4546
103 Ga0307515_10108156 3300028794 Bacteria 3279
104 Ga0307515_10195030 3300028794 Bacteria 1921
105 Ga0265338_10003900 3300028800 Bacteria 20610
106 Ga0307511_10000334 3300030521 Bacteria 50044
107 Ga0307512_10003502 3300030522 Bacteria 18157
108 Ga0307512_10101875 3300030522 Bacteria 1940
109 Ga0265773_1001067 3300031018 Bacteria 1371
110 Ga0307513_10013181 3300031456 Bacteria 10156
111 Ga0307513_10013351 3300031456 Bacteria 10086
112 Ga0307513_10027252 3300031456 Bacteria 6564
113 Ga0307513_10066545 3300031456 Bacteria 3785
114 Ga0307513_10314096 3300031456 Bacteria 1328
115 Ga0307509_10079503 3300031507 Bacteria 3394
116 Ga0307508_10003454 3300031616 Bacteria 15993
117 Ga0307508_10033740 3300031616 Bacteria 4619
118 Ga0307516_10013919 3300031730 Bacteria 8536
119 Ga0307516_10018038 3300031730 Bacteria 7342
120 Ga0307516_10189857 3300031730 Bacteria 1781
121 Ga0307518_10036150 3300031838 Bacteria 3589
122 Ga0307507_10032007 3300033179 Bacteria 5505
123 Ga0307507_10065701 3300033179 Bacteria 3332
124 Ga0307510_10024053 3300033180 Bacteria 7044
125 Ga0307510_10043754 3300033180 Bacteria 4862
126 Ga0307510_10092548 3300033180 Bacteria 2859
127 Ga0373930_0062118 3300034816 Bacteria 835
128 Ga0373950_0032795 3300034818 Bacteria 968
129 Ga0373934_0020172 3300035086 Bacteria 2561
130 Ga0373949_0009371 3300035090 Bacteria 2145
131 Ga0373951_0000003 3300035091 Bacteria 99610
132 Ga0373952_0008029 3300035092 Bacteria 1994
133 Ga0373932_0012528 3300035112 Bacteria 2089
134 Ga0373941_0156776 3300035115 Bacteria 839
135 Ga0373953_0004620 3300035117 Bacteria 4401
136 Ga0373954_0126904 3300035118 Bacteria 1240
137 Ga0373956_0033310 3300035119 Bacteria 2265
138 Ga0373957_0032639 3300035120 Bacteria 1919
139 Ga0373960_0064647 3300035121 Bacteria 1117
140 Ga0373943_0073578 3300035170 Bacteria 1736
141 Ga0373924_0045149 3300035410 Bacteria 1812
142 Ga0373931_0252175 3300035691 Bacteria 1073
143 Ga0373935_0040213 3300035692 Bacteria 2934
144 Ga0373933_0202141 3300035724 Bacteria 1272
145 Ga0373925_0640596 3300037068 Bacteria 876
146 Ga0436364_1493910 3300037853 Bacteria 6208
147 Ga0451833_0055123 3300041491 Bacteria 918
148 Ga0466972_0012621 3300044658 Bacteria 4245
149 Ga0466972_0040194 3300044658 Bacteria 2279
150 Ga0466972_0082945 3300044658 Bacteria 1525
151 Ga0466965_0168331 3300044683 Bacteria 1152
152 Ga0466966_0082007 3300044684 Bacteria 2007
153 Ga0466966_0086151 3300044684 Bacteria 1952
154 Ga0466961_0161631 3300044693 Bacteria 1396
155 Ga0466961_0509079 3300044693 Bacteria 727
156 Ga0466971_0044081 3300044719 Bacteria 2003
157 Ga0466970_0023821 3300044765 Bacteria 3200
158 Ga0466970_0124955 3300044765 Bacteria 1410
159 Ga0466960_0011568 3300044901 Bacteria 3697
160 Ga0466959_0053829 3300045049 Bacteria 2941
161 Ga0466959_0129436 3300045049 Bacteria 1789
162 Ga0466958_0074263 3300045836 Bacteria 2084
163 Ga0466967_0121632 3300045976 Bacteria 2413
164 Ga0466967_0883241 3300045976 Bacteria 889
165 Ga0495592_0017110 3300046454 Bacteria 5505
166 Ga0495592_0025740 3300046454 Bacteria 4466
167 Ga0495629_0031408 3300046459 Bacteria 3761
168 Ga0495629_0347864 3300046459 Bacteria 1011
169 Ga0495638_0114186 3300046460 Bacteria 1602
170 Ga0495651_0001693 3300046462 Bacteria 17046
171 Ga0495653_0030828 3300046463 Bacteria 4267
172 Ga0495582_0309085 3300046473 Bacteria 909
173 Ga0495662_0000551 3300046476 Bacteria 17180
174 Ga0495664_0004678 3300046477 Bacteria 7486
175 Ga0495664_0035727 3300046477 Bacteria 2927
176 Ga0495618_0008513 3300046514 Bacteria 6202
177 Ga0495618_0079815 3300046514 Bacteria 2087
178 Ga0495628_0122877 3300046516 Bacteria 1990
179 Ga0495630_0019502 3300046517 Bacteria 4985
180 Ga0495666_0258316 3300046526 Bacteria 793
181 Ga0495652_0034433 3300046529 Bacteria 4414
182 Ga0495652_0109769 3300046529 Bacteria 2220
183 Ga0495665_0220823 3300046531 Bacteria 980
184 Ga0495640_0039182 3300046533 Bacteria 3327
185 Ga0495640_0111634 3300046533 Bacteria 1786
186 Ga0495586_0110142 3300046535 Bacteria 1532
187 Ga0495587_0001028 3300046536 Bacteria 18349
188 Ga0495587_0012303 3300046536 Bacteria 5393
189 Ga0495645_0008907 3300046543 Bacteria 7010
190 Ga0495645_0094497 3300046543 Bacteria 2132
191 Ga0495667_0009859 3300046559 Bacteria 6470
192 Ga0495667_0180353 3300046559 Bacteria 1355
193 Ga0495634_0052351 3300046642 Bacteria 2736
194 Ga0495635_0094118 3300046663 Bacteria 2048
195 Ga0495588_0005293 3300046674 Bacteria 5736
196 Ga0495588_0231301 3300046674 Bacteria 975
197 Ga0495657_0007809 3300046675 Bacteria 8215
198 Ga0495657_0031279 3300046675 Bacteria 3720
199 Ga0495599_0016736 3300046678 Bacteria 4553
200 Ga0495599_0286420 3300046678 Bacteria 997
201 Ga0495623_0110123 3300046679 Bacteria 1670
202 Ga0495623_0166265 3300046679 Bacteria 1292
203 Ga0495646_0000400 3300046680 Bacteria 22769
204 Ga0495646_0060419 3300046680 Bacteria 2260
205 Ga0495658_0047384 3300046683 Bacteria 2420
206 Ga0495613_0001398 3300046689 Bacteria 18380
207 Ga0495600_0105650 3300046809 Bacteria 1834
208 Ga0495581_0005016 3300047315 Bacteria 7668
209 Ga0495604_0000673 3300047317 Bacteria 28933
210 Ga0495604_0019767 3300047317 Bacteria 5388
211 Ga0495674_0225054 3300047319 Bacteria 1550
212 Ga0495672_0022668 3300047320 Bacteria 4077
213 Ga0495676_0037453 3300047321 Bacteria 4036
214 Ga0495676_0277035 3300047321 Bacteria 1137
215 Ga0495687_001226 3300047443 Bacteria 24519
216 Ga0495675_0079958 3300047444 Bacteria 2059
217 Ga0495681_0002334 3300047470 Bacteria 13628
218 Ga0495684_0222853 3300047471 Bacteria 1382
219 Ga0495684_0403388 3300047471 Bacteria 959
220 Ga0495686_0132644 3300047472 Bacteria 1476
221 Ga0495593_0003505 3300047673 Bacteria 9384
222 Ga0495602_0042227 3300048088 Bacteria 4157
223 Ga0495614_0011600 3300048089 Bacteria 3874
224 Ga0496100_0118904 3300048903 Bacteria 1846
225 Ga0496101_0280390 3300048904 Bacteria 1302
226 Ga0496102_0058322 3300048905 Bacteria 3527
227 Ga0496102_0093595 3300048905 Bacteria 2784
228 Ga0496103_0017982 3300048906 Bacteria 4236
229 Ga0496104_0072570 3300048907 Bacteria 3273
230 Ga0496104_0300778 3300048907 Bacteria 1516
231 Ga0496106_0078401 3300048909 Bacteria 2535
232 Ga0496107_0015737 3300048910 Bacteria 5304
233 Ga0496108_0080484 3300048911 Bacteria 2759
234 Ga0496109_0017423 3300048912 Bacteria 6298
235 Ga0496111_0020075 3300048914 Bacteria 4648
236 Ga0496112_0014134 3300048915 Bacteria 7394
237 Ga0496114_0012076 3300048917 Bacteria 6912
238 Ga0496115_0015616 3300048918 Bacteria 5764
239 Ga0496117_0000120 3300048920 Bacteria 171697
240 Ga0496117_0006335 3300048920 Bacteria 12038
241 Ga0496117_0028578 3300048920 Bacteria 4316
242 Ga0496118_0034349 3300048921 Bacteria 4140
243 Ga0496119_0000200 3300048922 Bacteria 84506
244 Ga0496119_0164148 3300048922 Bacteria 1178
245 Ga0496120_0002800 3300048923 Bacteria 16893
246 Ga0496121_0141811 3300048924 Bacteria 1781
247 Ga0496122_0005418 3300048925 Bacteria 15216
248 Ga0496123_0040825 3300048926 Bacteria 3226
249 Ga0496126_0000208 3300048929 Bacteria 131604
250 Ga0496126_0017830 3300048929 Bacteria 7065
251 Ga0496126_0242049 3300048929 Bacteria 1507
252 Ga0501032_0045403 3300049569 Bacteria 2971
253 Ga0501033_0032058 3300049570 Bacteria 3945
254 Ga0501033_0061407 3300049570 Bacteria 2769
255 Ga0501033_0245906 3300049570 Bacteria 1268
256 Ga0501034_0002302 3300049571 Bacteria 23386
257 Ga0501034_0020654 3300049571 Bacteria 6726
258 Ga0501034_0070945 3300049571 Bacteria 3494
259 Ga0501034_0080720 3300049571 Bacteria 3256
260 Ga0501034_0124485 3300049571 Bacteria 2563
261 Ga0501036_0001107 3300049572 Bacteria 20472
262 Ga0501036_0002736 3300049572 Bacteria 13941
263 Ga0501036_0097698 3300049572 Bacteria 2482
264 Ga0501036_0105035 3300049572 Bacteria 2388
265 Ga0501036_0145296 3300049572 Bacteria 2000
266 Ga0501037_0005325 3300049573 Bacteria 9360
267 Ga0501037_0009502 3300049573 Bacteria 7135
268 Ga0501037_0010805 3300049573 Bacteria 6710
269 Ga0501037_0192861 3300049573 Bacteria 1442
270 Ga0501038_0000074 3300049574 Bacteria 82792
271 Ga0501038_0011254 3300049574 Bacteria 8170
272 Ga0501038_0064068 3300049574 Bacteria 3135
273 Ga0501038_0167490 3300049574 Bacteria 1781
274 Ga0501039_0000130 3300049575 Bacteria 52419
275 Ga0501039_0230154 3300049575 Bacteria 1457
276 Ga0501039_0398812 3300049575 Bacteria 1080
277 Ga0501042_0001681 3300049578 Bacteria 13187
278 Ga0501042_0012641 3300049578 Bacteria 5727
279 Ga0501043_0001187 3300049579 Bacteria 22900
280 Ga0501043_0003454 3300049579 Bacteria 12977
281 Ga0501043_0183166 3300049579 Bacteria 1631
282 Ga0501043_0343049 3300049579 Bacteria 1136
283 Ga0501046_0032970 3300049580 Bacteria 4190
284 Ga0501046_0243732 3300049580 Bacteria 1325
285 Ga0501047_0006280 3300049581 Bacteria 11172
286 Ga0501047_0041960 3300049581 Bacteria 4421
287 Ga0501047_0059108 3300049581 Bacteria 3701
288 Ga0501047_0088697 3300049581 Bacteria 2970
289 Ga0501047_0089779 3300049581 Bacteria 2950
290 Ga0501048_0003855 3300049582 Bacteria 11425
291 Ga0501048_0007592 3300049582 Bacteria 8222
292 Ga0501048_0107749 3300049582 Bacteria 1967
293 Ga0501070_0001030 3300049586 Bacteria 25055
294 Ga0501070_0041557 3300049586 Bacteria 3830
295 Ga0501070_0069036 3300049586 Bacteria 2926
296 Ga0501073_0231585 3300049589 Bacteria 1276
297 Ga0501074_0005506 3300049590 Bacteria 9111
298 Ga0501077_0154713 3300049593 Bacteria 1455
299 Ga0501083_0000027 3300049744 Bacteria 117605
300 Ga0501035_0008355 3300049822 Bacteria 9636
301 Ga0501035_0009342 3300049822 Bacteria 9111
302 Ga0501035_0012294 3300049822 Bacteria 7913
303 Ga0501035_0197652 3300049822 Bacteria 1726
304 Ga0501044_0027032 3300049823 Bacteria 6070
305 Ga0501044_0031256 3300049823 Bacteria 5605
306 Ga0501044_0173633 3300049823 Bacteria 2125
307 Ga0501044_0390045 3300049823 Bacteria 1306
308 Ga0501045_0222970 3300049824 Bacteria 1404
309 Ga0501045_0348336 3300049824 Bacteria 1102
310 Ga0495601_0272308 3300053077 Bacteria 1104
311 Ga0495619_0153551 3300053085 Bacteria 1588
312 Ga0500647_0070263 3300053091 Bacteria 1684
313 Ga0500583_0012160 3300053092 Bacteria 3273
314 Ga0500641_0029786 3300053096 Bacteria 2141
315 Ga0500650_0115632 3300053098 Bacteria 1252
316 Ga0500560_004403 3300053107 Bacteria 2990
317 Ga0500562_011951 3300053108 Bacteria 2204
318 Ga0500594_0021803 3300053118 Bacteria 1610
319 Ga0500658_0124381 3300053134 Bacteria 1146
320 Ga0500559_0018263 3300053136 Bacteria 2963
321 Ga0500559_0029664 3300053136 Bacteria 2343
322 Ga0500559_0167106 3300053136 Bacteria 1034
323 Ga0500616_0000183 3300053153 Bacteria 103074
324 Ga0500616_0000494 3300053153 Bacteria 50809
325 Ga0500616_0068619 3300053153 Bacteria 1815
326 Ga0500624_001612 3300053157 Bacteria 3430
327 Ga0500565_005822 3300053734 Bacteria 1106
328 Ga0466962_0038149 3300061719 Bacteria 2301
329 2626636920 2626541554 Bacteria 7741902
330 2644094375 2643221616 Bacteria 4066575
331 2784585606 2784132148 Bacteria 8627943
332 2793977424 2791355406 Bacteria 11364898
333 2809229100 2808606448 Bacteria 8656184
334 2844841678 2844841374 Bacteria 3917147
335 2884763867 2884763398 Bacteria 4091164
336 2912728229 2912723979 Bacteria 8557534
337 2919057356 2919055335 Bacteria 3875751
338 2919523728 2919523602 Bacteria 3788128
339 2928155132 2928153084 Bacteria 4020257
340 2932402319 2932401849 Bacteria 4262978
341 3006495957 3006493962 Bacteria 8825450
342 8008575270 8008574985 Bacteria 7815457
343 8023624896 8023623736 Bacteria 8593882
344 8047714612 8047710418 Bacteria 11023148
345 8047896528 8047893842 Bacteria 11723082
346 8048134411 8048127548 Bacteria 11053136
347 8048362407 8048356638 Bacteria 11044339
348 8048373542 8048369669 Bacteria 11666822
349 8048384700 8048379754 Bacteria 11877923
350 8054918560 8054913762 Bacteria 7713009
351 8057348354 8057345674 Bacteria 4160394
352 Ga0501033_0001250
353 JGI24737J22298_10034674
354 JGI24735J21928_10012193
355 JGI24735J21928_10020071
356 JGI25164J39214_1000373
357 JGI25406J46586_10018865
358 JGI25165J46597_1000014
359 Ga0006562J51391_1034892
360 Ga0006562J51391_1034893
361 Ga0055539_1000091
362 Ga0055533_1000001
363 Ga0055525_1000288
364 Ga0055541_1004763
365 Ga0070690_100003241
366 Ga0070682_100665165
367 Ga0070709_10000368
368 Ga0070709_10003642
369 Ga0070709_10078135
370 Ga0070709_10340571
371 Ga0070714_100000271
372 Ga0070714_100024555
373 Ga0070714_100566744
374 Ga0070714_100728792
375 Ga0070713_100002319
376 Ga0070713_100006202
377 Ga0070713_100049404
378 Ga0070713_100211084
379 Ga0070710_10000750
380 Ga0070710_10004840
381 Ga0070710_10153606
382 Ga0070711_100094298
383 Ga0070711_100124957
384 Ga0070708_100181147
385 Ga0070681_10477722
386 Ga0070706_100827502
387 Ga0070707_100047069
388 Ga0070707_100232959
389 Ga0070698_100008476
390 Ga0070699_100183038
391 Ga0070695_100360097
392 Ga0070665_100237236
393 Ga0068855_100963185
394 Ga0068856_100082795
395 Ga0081539_10000467
396 Ga0070717_10028193
397 Ga0070717_10104093
398 Ga0070717_10112800
399 Ga0070717_10124991
400 Ga0070717_10161614
401 Ga0070717_10327746
402 Ga0070715_10074444
403 Ga0070716_100006668
404 Ga0070716_100020871
405 Ga0070716_100064448
406 Ga0070712_100035016
407 Ga0070712_100405059
408 Ga0075362_10082295
409 Ga0157370_10770556
410 Ga0157369_10119090
411 Ga0157376_10773392
412 Ga0213875_10025801
413 Ga0228598_1015797
414 Ga0209566_100055
415 Ga0209674_100001
416 Ga0209563_100001
417 Ga0209563_100155
418 Ga0207427_100041
419 Ga0209437_101444
420 Ga0209677_100001
421 Ga0209233_1000014
422 Ga0209455_1001275
423 Ga0207692_10001313
424 Ga0207692_10001807
425 Ga0207699_10004418
426 Ga0207699_10456606
427 Ga0207707_10299889
428 Ga0207693_10046730
429 Ga0207693_10166293
430 Ga0207663_10003168
431 Ga0207663_10004300
432 Ga0207663_10102993
433 Ga0207663_10463262
434 Ga0207646_10088505
435 Ga0207700_10004340
436 Ga0207700_10011358
437 Ga0207700_10017700
438 Ga0207700_10158973
439 Ga0207664_10000365
440 Ga0207664_10013663
441 Ga0207664_10026587
442 Ga0207664_10448957
443 Ga0207644_10087552
444 Ga0207665_10000899
445 Ga0207665_10041979
446 Ga0207665_10067328
447 Ga0207667_10755377
448 Ga0207702_10398127
449 Ga0268266_10121359
450 Ga0307517_10001103
451 Ga0307517_10174252
452 Ga0307515_10000524
453 Ga0307515_10074373
454 Ga0307515_10108156
455 Ga0307515_10195030
456 Ga0265338_10003900
457 Ga0307511_10000334
458 Ga0307512_10003502
459 Ga0307512_10101875
460 Ga0265773_1001067
461 Ga0307513_10013181
462 Ga0307513_10013351
463 Ga0307513_10027252
464 Ga0307513_10066545
465 Ga0307513_10314096
466 Ga0307509_10079503
467 Ga0307508_10003454
468 Ga0307508_10033740
469 Ga0307516_10013919
470 Ga0307516_10018038
471 Ga0307516_10189857
472 Ga0307518_10036150
473 Ga0307507_10032007
474 Ga0307507_10065701
475 Ga0307510_10024053
476 Ga0307510_10043754
477 Ga0307510_10092548
478 Ga0373930_0062118
479 Ga0373950_0032795
480 Ga0373934_0020172
481 Ga0373949_0009371
482 Ga0373951_0000003
483 Ga0373952_0008029
484 Ga0373932_0012528
485 Ga0373941_0156776
486 Ga0373953_0004620
487 Ga0373954_0126904
488 Ga0373956_0033310
489 Ga0373957_0032639
490 Ga0373960_0064647
491 Ga0373943_0073578
492 Ga0373924_0045149
493 Ga0373931_0252175
494 Ga0373935_0040213
495 Ga0373933_0202141
496 Ga0373925_0640596
497 Ga0436364_1493910
498 Ga0451833_0055123
499 Ga0466972_0012621
500 Ga0466972_0040194
501 Ga0466972_0082945
502 Ga0466965_0168331
503 Ga0466966_0082007
504 Ga0466966_0086151
505 Ga0466961_0161631
506 Ga0466961_0509079
507 Ga0466971_0044081
508 Ga0466970_0023821
509 Ga0466970_0124955
510 Ga0466960_0011568
511 Ga0466959_0053829
512 Ga0466959_0129436
513 Ga0466958_0074263
514 Ga0466967_0121632
515 Ga0466967_0883241
516 Ga0495592_0017110
517 Ga0495592_0025740
518 Ga0495629_0031408
519 Ga0495629_0347864
520 Ga0495638_0114186
521 Ga0495651_0001693
522 Ga0495653_0030828
523 Ga0495582_0309085
524 Ga0495662_0000551
525 Ga0495664_0004678
526 Ga0495664_0035727
527 Ga0495618_0008513
528 Ga0495618_0079815
529 Ga0495628_0122877
530 Ga0495630_0019502
531 Ga0495666_0258316
532 Ga0495652_0034433
533 Ga0495652_0109769
534 Ga0495665_0220823
535 Ga0495640_0039182
536 Ga0495640_0111634
537 Ga0495586_0110142
538 Ga0495587_0001028
539 Ga0495587_0012303
540 Ga0495645_0008907
541 Ga0495645_0094497
542 Ga0495667_0009859
543 Ga0495667_0180353
544 Ga0495634_0052351
545 Ga0495635_0094118
546 Ga0495588_0005293
547 Ga0495588_0231301
548 Ga0495657_0007809
549 Ga0495657_0031279
550 Ga0495599_0016736
551 Ga0495599_0286420
552 Ga0495623_0110123
553 Ga0495623_0166265
554 Ga0495646_0000400
555 Ga0495646_0060419
556 Ga0495658_0047384
557 Ga0495613_0001398
558 Ga0495600_0105650
559 Ga0495581_0005016
560 Ga0495604_0000673
561 Ga0495604_0019767
562 Ga0495674_0225054
563 Ga0495672_0022668
564 Ga0495676_0037453
565 Ga0495676_0277035
566 Ga0495687_001226
567 Ga0495675_0079958
568 Ga0495681_0002334
569 Ga0495684_0222853
570 Ga0495684_0403388
571 Ga0495686_0132644
572 Ga0495593_0003505
573 Ga0495602_0042227
574 Ga0495614_0011600
575 Ga0496100_0118904
576 Ga0496101_0280390
577 Ga0496102_0058322
578 Ga0496102_0093595
579 Ga0496103_0017982
580 Ga0496104_0072570
581 Ga0496104_0300778
582 Ga0496106_0078401
583 Ga0496107_0015737
584 Ga0496108_0080484
585 Ga0496109_0017423
586 Ga0496111_0020075
587 Ga0496112_0014134
588 Ga0496114_0012076
589 Ga0496115_0015616
590 Ga0496117_0000120
591 Ga0496117_0006335
592 Ga0496117_0028578
593 Ga0496118_0034349
594 Ga0496119_0000200
595 Ga0496119_0164148
596 Ga0496120_0002800
597 Ga0496121_0141811
598 Ga0496122_0005418
599 Ga0496123_0040825
600 Ga0496126_0000208
601 Ga0496126_0017830
602 Ga0496126_0242049
603 Ga0501032_0045403
604 Ga0501033_0032058
605 Ga0501033_0061407
606 Ga0501033_0245906
607 Ga0501034_0002302
608 Ga0501034_0020654
609 Ga0501034_0070945
610 Ga0501034_0080720
611 Ga0501034_0124485
612 Ga0501036_0001107
613 Ga0501036_0002736
614 Ga0501036_0097698
615 Ga0501036_0105035
616 Ga0501036_0145296
617 Ga0501037_0005325
618 Ga0501037_0009502
619 Ga0501037_0010805
620 Ga0501037_0192861
621 Ga0501038_0000074
622 Ga0501038_0011254
623 Ga0501038_0064068
624 Ga0501038_0167490
625 Ga0501039_0000130
626 Ga0501039_0230154
627 Ga0501039_0398812
628 Ga0501042_0001681
629 Ga0501042_0012641
630 Ga0501043_0001187
631 Ga0501043_0003454
632 Ga0501043_0183166
633 Ga0501043_0343049
634 Ga0501046_0032970
635 Ga0501046_0243732
636 Ga0501047_0006280
637 Ga0501047_0041960
638 Ga0501047_0059108
639 Ga0501047_0088697
640 Ga0501047_0089779
641 Ga0501048_0003855
642 Ga0501048_0007592
643 Ga0501048_0107749
644 Ga0501070_0001030
645 Ga0501070_0041557
646 Ga0501070_0069036
647 Ga0501073_0231585
648 Ga0501074_0005506
649 Ga0501077_0154713
650 Ga0501083_0000027
651 Ga0501035_0008355
652 Ga0501035_0009342
653 Ga0501035_0012294
654 Ga0501035_0197652
655 Ga0501044_0027032
656 Ga0501044_0031256
657 Ga0501044_0173633
658 Ga0501044_0390045
659 Ga0501045_0222970
660 Ga0501045_0348336
661 Ga0495601_0272308
662 Ga0495619_0153551
663 Ga0500647_0070263
664 Ga0500583_0012160
665 Ga0500641_0029786
666 Ga0500650_0115632
667 Ga0500560_004403
668 Ga0500562_011951
669 Ga0500594_0021803
670 Ga0500658_0124381
671 Ga0500559_0018263
672 Ga0500559_0029664
673 Ga0500559_0167106
674 Ga0500616_0000183
675 Ga0500616_0000494
676 Ga0500616_0068619
677 Ga0500624_001612
678 Ga0500565_005822
679 Ga0466962_0038149
680 2626636920
681 2644094375
682 2784585606
683 2793977424
684 2809229100
685 2844841678
686 2884763867
687 2912728229
688 2919057356
689 2919523728
690 2928155132
691 2932402319
692 3006495957
693 8008575270
694 8023624896
695 8047714612
696 8047896528
697 8048134411
698 8048362407
699 8048373542
700 8048384700
701 8054918560
702 8057348354

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17929

TetR_C_34

Tetracyclin repressor-like, C-terminal domain

94

213

0.99

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

22

68

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
2zcx-assembly1.cif.gz_A-2 crystal structure of tetr family transcriptional regulator sco7815 0.9673 19 221
2zcx-assembly1.cif.gz_A-2 crystal structure of tetr family transcriptional regulator sco7815 0.9535 19 221
2hku-assembly1.cif.gz_B structural genomics, the crystal structure of a putative transcriptional regulator from rhodococcus sp. rha1 0.7512 25 221
2hku-assembly1.cif.gz_B structural genomics, the crystal structure of a putative transcriptional regulator from rhodococcus sp. rha1 0.709 25 221
5n1i-assembly1.cif.gz_B unliganded form of the mycobacterium tuberculosis repressor ethr2 0.7083 21 221
ID Description Score Start End Superfamily
2zcxA00 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;Tetracycline Repressor, domain 2 0.9673 19 221 1.10.357.10
2zcxA00 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;Tetracycline Repressor, domain 2 0.9535 19 221 1.10.357.10
af_O53737_19_228_1.10.357.10 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;Tetracycline Repressor, domain 2 0.9433 19 221 1.10.357.10
2y30A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9345 25 69 1.10.10.60
2raeA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9287 24 63 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A2U3NGD8-F1-model_v4 TetR family transcriptional regulator 0.968 29 220 GO:0003677
GO:0006355
AF-A0A1Q8CR09-F1-model_v4 HTH tetR-type domain-containing protein 0.9612 14 221 GO:0000976
GO:0003700
AF-A0A011ACR5-F1-model_v4 Transcriptional regulator 0.9611 12 218 GO:0000976
GO:0003700
AF-A0A428YSR0-F1-model_v4 TetR family transcriptional regulator 0.9609 28 220 GO:0000976
GO:0003700
AF-A0A4R7MDW5-F1-model_v4 TetR family transcriptional regulator 0.9575 12 221 GO:0000976
GO:0003700

Map