F415492

General Info

Members Datasets Scaffolds Average Seq Length
343 167 686 506

Family's Representative Sequence

Representative Sequence 3300005719|Ga0068861_100005038|Ga0068861_1000050384
Length 534
Sequence VSSHVILLTDAHEAPAYDLIEALRAAGVKTLIEGLREVEVEVALTRQQKKQGLSDLDGPPPLAVLYEVVPGADMVELHTAINHAKAFWPGAPLVACRRQMNGYQSLNLRSLDGATLKRLGFLAIADKSAQLPAMLREIEGQGNSGELRLPEIVERPVGRGSSSLPSKIKFSDLRAAFDLVASLHFIGDQSGAANTALAGLEHLISADRWAIYLFSEEKGVESATLEAIAVRRPGQHSSVKSEEEWRRVLTGESDLPIGSESRAAKRAAAGMGIIKKKERGQFILAVPLICGERILGVIEGIREGSGARAFKKTDVALLDSLSLPIASALANSVRIAEAERLSQTDDLTKLHNARYLRQFLLNEIRRARRYGSSVAALFLDLDDFKRINDAHGHLVGSHVLMEMAAVILSSIRDTDAVARYGGDEFVIVLPDTGTELAGTVAERIRQKILRHHFTGGRRLQLSLTASFGVAAFPKHASSPQQLIACADTAMYEAKAANKNCVRFAADLAPKEPPQQIIEMIEVEAGNPIPGPAQG

Samples

Sample ID Description Type Environment
1 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
2 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
7 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
8 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
10 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
11 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
12 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
13 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
14 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
15 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
16 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
17 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
18 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
19 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
20 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
21 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
22 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
23 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
24 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
25 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
26 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
27 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
28 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
29 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
30 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
31 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
32 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
33 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
34 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
35 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
36 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
37 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
38 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
39 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
40 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
41 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
42 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
43 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
44 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
45 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
46 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
47 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
48 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
49 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
50 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
51 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
52 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
53 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
54 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
55 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
56 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
57 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
58 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
59 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
60 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
61 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
62 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
63 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
64 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
65 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
66 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
67 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
68 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
69 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
70 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
71 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
72 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
73 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
74 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
75 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
76 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
77 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
78 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
79 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
80 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
81 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
82 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
83 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
84 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
85 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
86 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
87 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
88 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
89 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
90 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
91 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
92 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
93 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
94 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
121 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
122 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
123 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
124 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
125 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
126 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
127 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
128 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
129 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
130 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
131 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
132 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
133 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
134 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
135 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
136 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
137 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
138 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
139 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
140 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
141 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
142 3300038996 Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 Metagenome Rhizosphere
143 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
144 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
145 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
146 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
147 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
148 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
149 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
150 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
151 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
152 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
153 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
155 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
156 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
157 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
158 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
159 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
160 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
161 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
162 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
163 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
164 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
165 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
166 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
167 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.75
Rhizosphere 97.96
Stem 0
Stem Tuber 0
Unclassified 4.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068861_100005038 3300005719 Bacteria 8908
2 JGI24751J29686_10000059 3300002459 Bacteria 61971
3 JGI25406J46586_10003293 3300003203 Bacteria 7596
4 rootL2_10198831 3300003322 Bacteria 2593
5 Ga0065714_10064422 3300005288 Bacteria 270668
6 Ga0065704_10072006 3300005289 Bacteria 9395
7 Ga0065704_10101337 3300005289 Bacteria 2240
8 Ga0065704_10117567 3300005289 Bacteria 1831
9 Ga0065712_10000122 3300005290 Bacteria 92508
10 Ga0065712_10004647 3300005290 Bacteria 6734
11 Ga0065715_10006382 3300005293 Bacteria 3274
12 Ga0065715_10091481 3300005293 Bacteria 5760
13 Ga0065715_10093017 3300005293 Bacteria 4839
14 Ga0065715_10096831 3300005293 Unclassified 3807
15 Ga0065707_10001816 3300005295 Bacteria 12318
16 Ga0065707_10094305 3300005295 Unclassified 3515
17 Ga0070690_100000612 3300005330 Bacteria 18067
18 Ga0070690_100001912 3300005330 Bacteria 11054
19 Ga0070690_100008137 3300005330 Bacteria 6026
20 Ga0070670_100000331 3300005331 Bacteria 39667
21 Ga0070670_100016850 3300005331 Bacteria 6272
22 Ga0068869_100001138 3300005334 Bacteria 15509
23 Ga0068869_100006262 3300005334 Bacteria 7535
24 Ga0068869_100023441 3300005334 Unclassified 4263
25 Ga0068869_100098449 3300005334 Bacteria 2209
26 Ga0070666_10130906 3300005335 Bacteria 1743
27 Ga0070680_100002905 3300005336 Bacteria 12732
28 Ga0070680_100106905 3300005336 Bacteria 2327
29 Ga0070682_100000112 3300005337 Bacteria 72106
30 Ga0070682_100011704 3300005337 Bacteria 5016
31 Ga0068868_100005161 3300005338 Bacteria 9167
32 Ga0068868_100011202 3300005338 Bacteria 6530
33 Ga0070689_100087119 3300005340 Bacteria 2456
34 Ga0070687_100011766 3300005343 Bacteria 3840
35 Ga0070687_100031017 3300005343 Bacteria 2619
36 Ga0070692_10002317 3300005345 Bacteria 7339
37 Ga0070692_10050055 3300005345 Bacteria 2169
38 Ga0070668_100005326 3300005347 Bacteria 9553
39 Ga0070669_100003575 3300005353 Bacteria 11217
40 Ga0070669_100009968 3300005353 Bacteria 6757
41 Ga0070669_100026044 3300005353 Bacteria 4206
42 Ga0070669_100090825 3300005353 Bacteria 2289
43 Ga0070675_100017970 3300005354 Bacteria 5627
44 Ga0070675_100018323 3300005354 Bacteria 5573
45 Ga0070671_100001508 3300005355 Bacteria 17436
46 Ga0070674_100053749 3300005356 Bacteria 2782
47 Ga0070673_100109165 3300005364 Bacteria 2292
48 Ga0070659_100007413 3300005366 Bacteria 7967
49 Ga0070667_100028390 3300005367 Unclassified 4658
50 Ga0070667_100037159 3300005367 Bacteria 4083
51 Ga0070701_10028517 3300005438 Bacteria 2744
52 Ga0070700_100000065 3300005441 Bacteria 76224
53 Ga0070700_100001252 3300005441 Bacteria 12586
54 Ga0070700_100023227 3300005441 Bacteria 3626
55 Ga0070700_100025864 3300005441 Bacteria 3460
56 Ga0070700_100030072 3300005441 Bacteria 3242
57 Ga0070694_100006530 3300005444 Bacteria 7082
58 Ga0070694_100015972 3300005444 Bacteria 4723
59 Ga0070694_100020091 3300005444 Bacteria 4254
60 Ga0070708_100000756 3300005445 Bacteria 24364
61 Ga0070708_100028224 3300005445 Bacteria 4827
62 Ga0070662_100019968 3300005457 Bacteria 4560
63 Ga0070662_100034018 3300005457 Bacteria 3592
64 Ga0070681_10000089 3300005458 Bacteria 68795
65 Ga0070681_10005756 3300005458 Bacteria 11984
66 Ga0070681_10009628 3300005458 Bacteria 9502
67 Ga0068867_100147184 3300005459 Unclassified 1847
68 Ga0070706_100000555 3300005467 Bacteria 43489
69 Ga0070706_100002872 3300005467 Bacteria 17162
70 Ga0070706_100008193 3300005467 Bacteria 9752
71 Ga0070706_100017296 3300005467 Bacteria 6655
72 Ga0070706_100152443 3300005467 Unclassified 2158
73 Ga0070707_100054137 3300005468 Bacteria 3847
74 Ga0070698_100007364 3300005471 Bacteria 11916
75 Ga0070698_100007629 3300005471 Bacteria 11707
76 Ga0070698_100010525 3300005471 Bacteria 9859
77 Ga0070698_100041741 3300005471 Bacteria 4709
78 Ga0070699_100003583 3300005518 Bacteria 13733
79 Ga0070699_100013145 3300005518 Bacteria 7138
80 Ga0070699_100065644 3300005518 Bacteria 3150
81 Ga0070679_100000014 3300005530 Bacteria 150481
82 Ga0070679_100188505 3300005530 Bacteria 2032
83 Ga0070697_100000160 3300005536 Bacteria 54910
84 Ga0070697_100000229 3300005536 Bacteria 45809
85 Ga0070697_100004763 3300005536 Bacteria 10400
86 Ga0068853_100013109 3300005539 Bacteria 6764
87 Ga0070672_100144593 3300005543 Bacteria 1964
88 Ga0070686_100000928 3300005544 Bacteria 16839
89 Ga0070686_100001875 3300005544 Bacteria 11714
90 Ga0070696_100048578 3300005546 Bacteria 2946
91 Ga0070693_100010761 3300005547 Bacteria 4589
92 Ga0070693_100020572 3300005547 Bacteria 3482
93 Ga0070693_100051764 3300005547 Bacteria 2352
94 Ga0070704_100070781 3300005549 Bacteria 2532
95 Ga0070664_100001972 3300005564 Bacteria 16442
96 Ga0070664_100039468 3300005564 Bacteria 3978
97 Ga0068857_100007753 3300005577 Bacteria 9252
98 Ga0068856_100022336 3300005614 Bacteria 6149
99 Ga0070702_100002731 3300005615 Bacteria 7715
100 Ga0068859_100028380 3300005617 Bacteria 5610
101 Ga0068859_100042761 3300005617 Bacteria 4552
102 Ga0068859_100066342 3300005617 Bacteria 3644
103 Ga0068859_100105290 3300005617 Bacteria 2880
104 Ga0068859_100205923 3300005617 Bacteria 2052
105 Ga0068864_100002051 3300005618 Bacteria 16634
106 Ga0068864_100010313 3300005618 Bacteria 7715
107 Ga0068864_100022280 3300005618 Bacteria 5311
108 Ga0068864_100138888 3300005618 Bacteria 2190
109 Ga0068861_100027973 3300005719 Bacteria 4111
110 Ga0068861_100028620 3300005719 Bacteria 4067
111 Ga0068851_10025269 3300005834 Bacteria 2913
112 Ga0068870_10003606 3300005840 Bacteria 6574
113 Ga0068870_10019645 3300005840 Bacteria 3279
114 Ga0068863_100041917 3300005841 Bacteria 4350
115 Ga0068863_100084634 3300005841 Bacteria 3005
116 Ga0068858_100025414 3300005842 Bacteria 5511
117 Ga0068858_100042765 3300005842 Bacteria 4201
118 Ga0068860_100013121 3300005843 Bacteria 8131
119 Ga0068860_100028690 3300005843 Bacteria 5357
120 Ga0068860_100087402 3300005843 Bacteria 2968
121 Ga0068860_100098177 3300005843 Bacteria 2793
122 Ga0068860_100116947 3300005843 Bacteria 2551
123 Ga0068860_100179517 3300005843 Bacteria 2046
124 Ga0081540_1020560 3300005983 Bacteria 3964
125 Ga0081539_10000502 3300005985 Bacteria 82098
126 Ga0081539_10000612 3300005985 Bacteria 72310
127 Ga0081539_10001231 3300005985 Bacteria 45721
128 Ga0070716_100066603 3300006173 Bacteria 2101
129 Ga0097621_100010220 3300006237 Bacteria 6852
130 Ga0068871_100087357 3300006358 Bacteria 2592
131 Ga0075430_100012400 3300006846 Bacteria 7252
132 Ga0075430_100070311 3300006846 Bacteria 2936
133 Ga0075431_100013609 3300006847 Bacteria 8220
134 Ga0075433_10015577 3300006852 Bacteria 6243
135 Ga0075433_10026381 3300006852 Bacteria 4918
136 Ga0075433_10094157 3300006852 Bacteria 2651
137 Ga0075434_100012491 3300006871 Bacteria 8054
138 Ga0075429_100011985 3300006880 Bacteria 7516
139 Ga0097620_100028382 3300006931 Bacteria 5610
140 Ga0097620_100042762 3300006931 Bacteria 4552
141 Ga0097620_100066346 3300006931 Bacteria 3644
142 Ga0097620_100105279 3300006931 Bacteria 2880
143 Ga0097620_100205900 3300006931 Bacteria 2052
144 Ga0075435_100021746 3300007076 Bacteria 4940
145 Ga0075435_100113712 3300007076 Bacteria 2253
146 Ga0105244_10055638 3300009036 Unclassified 2004
147 Ga0105240_10026736 3300009093 Bacteria 7569
148 Ga0105240_10055286 3300009093 Bacteria 4970
149 Ga0111539_10002599 3300009094 Bacteria 23915
150 Ga0111539_10008452 3300009094 Bacteria 13094
151 Ga0111539_10127819 3300009094 Bacteria 2976
152 Ga0111539_10180912 3300009094 Bacteria 2462
153 Ga0111539_10185878 3300009094 Unclassified 2427
154 Ga0111539_10213099 3300009094 Bacteria 2250
155 Ga0105245_10018988 3300009098 Bacteria 6017
156 Ga0105247_10012219 3300009101 Bacteria 5160
157 Ga0105247_10087606 3300009101 Bacteria 1972
158 Ga0114129_10003316 3300009147 Bacteria 22613
159 Ga0114129_10005912 3300009147 Bacteria 17312
160 Ga0114129_10017815 3300009147 Bacteria 10113
161 Ga0114129_10028517 3300009147 Bacteria 7909
162 Ga0114129_10065702 3300009147 Bacteria 5062
163 Ga0114129_10073046 3300009147 Bacteria 4779
164 Ga0114129_10094960 3300009147 Bacteria 4130
165 Ga0114129_10226867 3300009147 Bacteria 2517
166 Ga0114129_10278926 3300009147 Bacteria 2233
167 Ga0114129_10385751 3300009147 Bacteria 1849
168 Ga0105243_10015779 3300009148 Bacteria 5713
169 Ga0105243_10067934 3300009148 Bacteria 2871
170 Ga0105243_10151360 3300009148 Bacteria 1991
171 Ga0105241_10186677 3300009174 Unclassified 1723
172 Ga0105248_10006385 3300009177 Bacteria 12939
173 Ga0105248_10007714 3300009177 Bacteria 11820
174 Ga0105248_10015032 3300009177 Bacteria 8522
175 Ga0105248_10016846 3300009177 Bacteria 8044
176 Ga0105248_10069238 3300009177 Bacteria 3962
177 Ga0105248_10159141 3300009177 Bacteria 2548
178 Ga0105237_10002216 3300009545 Bacteria 24329
179 Ga0105237_10018174 3300009545 Bacteria 7278
180 Ga0105237_10077164 3300009545 Bacteria 3322
181 Ga0105238_10004301 3300009551 Bacteria 14132
182 Ga0105249_10000025 3300009553 Bacteria 232713
183 Ga0105249_10007814 3300009553 Bacteria 9313
184 Ga0105249_10028582 3300009553 Bacteria 5033
185 Ga0105249_10090608 3300009553 Bacteria 2859
186 Ga0105239_10070621 3300010375 Bacteria 3836
187 Ga0105239_10099378 3300010375 Bacteria 3217
188 Ga0157373_10002880 3300013100 Bacteria 13012
189 Ga0157373_10034014 3300013100 Bacteria 3662
190 Ga0157374_10026868 3300013296 Bacteria 5183
191 Ga0157374_10040966 3300013296 Unclassified 4266
192 Ga0157378_10004573 3300013297 Bacteria 12136
193 Ga0157378_10008763 3300013297 Bacteria 8808
194 Ga0157378_10012993 3300013297 Bacteria 7284
195 Ga0157378_10103617 3300013297 Bacteria 2600
196 Ga0163162_10000002 3300013306 Bacteria 717331
197 Ga0163162_10000734 3300013306 Bacteria 30397
198 Ga0163162_10007470 3300013306 Bacteria 10633
199 Ga0163162_10085355 3300013306 Bacteria 3234
200 Ga0157372_10194265 3300013307 Bacteria 2351
201 Ga0157375_10010202 3300013308 Bacteria 8267
202 Ga0157375_10030863 3300013308 Bacteria 5059
203 Ga0157375_10165607 3300013308 Bacteria 2355
204 Ga0157375_10239598 3300013308 Bacteria 1974
205 Ga0163163_10000934 3300014325 Bacteria 24788
206 Ga0163163_10001951 3300014325 Bacteria 17443
207 Ga0163163_10004215 3300014325 Bacteria 12256
208 Ga0163163_10010341 3300014325 Bacteria 8384
209 Ga0163163_10078093 3300014325 Bacteria 3306
210 Ga0157380_10000207 3300014326 Bacteria 34905
211 Ga0157380_10001969 3300014326 Bacteria 13678
212 Ga0157380_10005379 3300014326 Bacteria 8949
213 Ga0157380_10008210 3300014326 Bacteria 7440
214 Ga0157380_10010718 3300014326 Bacteria 6606
215 Ga0157380_10012652 3300014326 Bacteria 6125
216 Ga0157380_10018571 3300014326 Bacteria 5163
217 Ga0157380_10057308 3300014326 Bacteria 3102
218 Ga0157379_10081876 3300014968 Bacteria 2892
219 Ga0157379_10091135 3300014968 Bacteria 2735
220 Ga0157376_10006987 3300014969 Bacteria 8008
221 Ga0157376_10024699 3300014969 Bacteria 4723
222 Ga0163161_10004656 3300017792 Bacteria 9540
223 Ga0163161_10090690 3300017792 Bacteria 2261
224 Ga0207656_10029801 3300025321 Bacteria 2250
225 Ga0207653_10007997 3300025885 Bacteria 3295
226 Ga0207710_10001268 3300025900 Bacteria 12753
227 Ga0207647_10005301 3300025904 Bacteria 9476
228 Ga0207643_10004212 3300025908 Bacteria 7753
229 Ga0207643_10010694 3300025908 Bacteria 4945
230 Ga0207643_10021028 3300025908 Bacteria 3583
231 Ga0207684_10000085 3300025910 Bacteria 175922
232 Ga0207684_10009660 3300025910 Bacteria 8508
233 Ga0207684_10019079 3300025910 Bacteria 5867
234 Ga0207707_10000016 3300025912 Bacteria 256002
235 Ga0207660_10002053 3300025917 Bacteria 13367
236 Ga0207662_10001801 3300025918 Bacteria 10515
237 Ga0207662_10006350 3300025918 Bacteria 6375
238 Ga0207652_10000126 3300025921 Bacteria 82522
239 Ga0207681_10000395 3300025923 Bacteria 30526
240 Ga0207681_10065546 3300025923 Bacteria 2511
241 Ga0207694_10015947 3300025924 Bacteria 5670
242 Ga0207650_10000011 3300025925 Bacteria 450115
243 Ga0207650_10063021 3300025925 Bacteria 2771
244 Ga0207650_10087997 3300025925 Unclassified 2368
245 Ga0207659_10010474 3300025926 Bacteria 5829
246 Ga0207644_10025512 3300025931 Bacteria 4064
247 Ga0207644_10087563 3300025931 Bacteria 2315
248 Ga0207704_10019864 3300025938 Bacteria 3540
249 Ga0207704_10078855 3300025938 Unclassified 2120
250 Ga0207704_10158249 3300025938 Bacteria 1608
251 Ga0207691_10006377 3300025940 Bacteria 11396
252 Ga0207711_10002913 3300025941 Bacteria 15003
253 Ga0207711_10085143 3300025941 Bacteria 2769
254 Ga0207711_10107907 3300025941 Bacteria 2472
255 Ga0207711_10133280 3300025941 Bacteria 2229
256 Ga0207689_10004678 3300025942 Bacteria 12353
257 Ga0207689_10005863 3300025942 Bacteria 10888
258 Ga0207689_10023005 3300025942 Bacteria 5235
259 Ga0207689_10028815 3300025942 Bacteria 4643
260 Ga0207689_10029992 3300025942 Bacteria 4535
261 Ga0207651_10019581 3300025960 Bacteria 4060
262 Ga0207712_10000333 3300025961 Bacteria 43028
263 Ga0207712_10018209 3300025961 Unclassified 4572
264 Ga0207668_10010410 3300025972 Bacteria 5618
265 Ga0207658_10015645 3300025986 Bacteria 5208
266 Ga0207677_10007021 3300026023 Bacteria 6195
267 Ga0207703_10067830 3300026035 Unclassified 2937
268 Ga0207703_10099227 3300026035 Bacteria 2465
269 Ga0207703_10192967 3300026035 Bacteria 1805
270 Ga0207708_10000091 3300026075 Bacteria 71484
271 Ga0207708_10002429 3300026075 Bacteria 13685
272 Ga0207708_10006493 3300026075 Bacteria 8662
273 Ga0207708_10019704 3300026075 Bacteria 5088
274 Ga0207708_10029450 3300026075 Bacteria 4162
275 Ga0207708_10057816 3300026075 Bacteria 2959
276 Ga0207708_10132745 3300026075 Bacteria 1948
277 Ga0207702_10087080 3300026078 Unclassified 2725
278 Ga0207641_10143128 3300026088 Bacteria 2160
279 Ga0207648_10012177 3300026089 Bacteria 8058
280 Ga0207676_10005227 3300026095 Bacteria 9186
281 Ga0207676_10039546 3300026095 Bacteria 3608
282 Ga0207674_10000169 3300026116 Bacteria 78781
283 Ga0207674_10031586 3300026116 Bacteria 5561
284 Ga0207674_10108870 3300026116 Bacteria 2747
285 Ga0207674_10112746 3300026116 Bacteria 2693
286 Ga0207675_100001843 3300026118 Bacteria 21273
287 Ga0207675_100004607 3300026118 Bacteria 13286
288 Ga0207675_100006458 3300026118 Bacteria 11102
289 Ga0207675_100040428 3300026118 Bacteria 4355
290 Ga0207675_100056763 3300026118 Bacteria 3652
291 Ga0207428_10014879 3300027907 Bacteria 6739
292 Ga0268265_10009238 3300028380 Bacteria 6663
293 Ga0268264_10026762 3300028381 Bacteria 4712
294 Ga0268264_10044705 3300028381 Bacteria 3674
295 Ga0268264_10094074 3300028381 Bacteria 2590
296 Ga0307408_100004717 3300031548 Bacteria 9202
297 Ga0307405_10067017 3300031731 Bacteria 2291
298 Ga0307413_10045076 3300031824 Bacteria 2611
299 Ga0307406_10001225 3300031901 Bacteria 14372
300 Ga0307407_10002413 3300031903 Bacteria 7310
301 Ga0307412_10007018 3300031911 Bacteria 6394
302 Ga0307409_100071310 3300031995 Bacteria 2762
303 Ga0307414_10043517 3300032004 Bacteria 3059
304 Ga0307411_10013240 3300032005 Bacteria 4542
305 Ga0307415_100017711 3300032126 Bacteria 4277
306 Ga0373941_0019130 3300035115 Bacteria 1902
307 Ga0395900_0065476 3300037418 Bacteria 3734
308 Ga0395898_0041770 3300037466 Bacteria 4527
309 Ga0395898_0145869 3300037466 Bacteria 2265
310 Ga0242420_000945 3300038996 Bacteria 3645
311 Ga0439458_0004168 3300042157 Bacteria 3338
312 Ga0495580_0119995 3300046472 Bacteria 1826
313 Ga0495663_0000097 3300046525 Bacteria 36409
314 Ga0495598_0000088 3300046537 Bacteria 14973
315 Ga0495621_0000647 3300046539 Bacteria 8767
316 Ga0496102_0034583 3300048905 Bacteria 4545
317 Ga0496104_0018017 3300048907 Bacteria 6439
318 Ga0496104_0042366 3300048907 Bacteria 4272
319 Ga0496109_0105628 3300048912 Unclassified 2616
320 Ga0496112_0083139 3300048915 Bacteria 3166
321 Ga0496112_0129099 3300048915 Bacteria 2499
322 Ga0501299_002635 3300049522 Bacteria 2501
323 Ga0501038_0049929 3300049574 Bacteria 3616
324 Ga0501217_000177 3300049661 Bacteria 9316
325 Ga0501217_002433 3300049661 Bacteria 3666
326 Ga0501224_001709 3300049664 Bacteria 2940
327 Ga0501227_002079 3300049665 Bacteria 4435
328 Ga0501233_006129 3300049668 Bacteria 2250
329 Ga0501235_003770 3300049669 Bacteria 3276
330 Ga0501243_002505 3300049675 Bacteria 2695
331 Ga0501249_004237 3300049679 Bacteria 2909
332 Ga0501257_017255 3300049686 Bacteria 1678
333 Ga0501225_0016524 3300049705 Bacteria 2053
334 Ga0501234_001379 3300049707 Bacteria 3807
335 nmdc:mga05p37_19064_c2 3300050507 Bacteria 4602
336 nmdc:mga05p37_22778_c1 3300050507 Bacteria 7597
337 nmdc:mga0qj67_21514_c1 3300050509 Bacteria 4948
338 nmdc:mga0qj67_31522_c1 3300050509 Bacteria 4130
339 nmdc:mga08y16_101523_c1 3300050511 Unclassified 2995
340 nmdc:mga08y16_7854_c1 3300050511 Bacteria 11169
341 nmdc:mga08y16_9981_c1 3300050511 Bacteria 9964
342 nmdc:mga0a205_16699_c1 3300050515 Bacteria 6875
343 nmdc:mga0a205_3680_c1 3300050515 Bacteria 13725
344 Ga0068861_100005038
345 JGI24751J29686_10000059
346 JGI25406J46586_10003293
347 rootL2_10198831
348 Ga0065714_10064422
349 Ga0065704_10072006
350 Ga0065704_10101337
351 Ga0065704_10117567
352 Ga0065712_10000122
353 Ga0065712_10004647
354 Ga0065715_10006382
355 Ga0065715_10091481
356 Ga0065715_10093017
357 Ga0065715_10096831
358 Ga0065707_10001816
359 Ga0065707_10094305
360 Ga0070690_100000612
361 Ga0070690_100001912
362 Ga0070690_100008137
363 Ga0070670_100000331
364 Ga0070670_100016850
365 Ga0068869_100001138
366 Ga0068869_100006262
367 Ga0068869_100023441
368 Ga0068869_100098449
369 Ga0070666_10130906
370 Ga0070680_100002905
371 Ga0070680_100106905
372 Ga0070682_100000112
373 Ga0070682_100011704
374 Ga0068868_100005161
375 Ga0068868_100011202
376 Ga0070689_100087119
377 Ga0070687_100011766
378 Ga0070687_100031017
379 Ga0070692_10002317
380 Ga0070692_10050055
381 Ga0070668_100005326
382 Ga0070669_100003575
383 Ga0070669_100009968
384 Ga0070669_100026044
385 Ga0070669_100090825
386 Ga0070675_100017970
387 Ga0070675_100018323
388 Ga0070671_100001508
389 Ga0070674_100053749
390 Ga0070673_100109165
391 Ga0070659_100007413
392 Ga0070667_100028390
393 Ga0070667_100037159
394 Ga0070701_10028517
395 Ga0070700_100000065
396 Ga0070700_100001252
397 Ga0070700_100023227
398 Ga0070700_100025864
399 Ga0070700_100030072
400 Ga0070694_100006530
401 Ga0070694_100015972
402 Ga0070694_100020091
403 Ga0070708_100000756
404 Ga0070708_100028224
405 Ga0070662_100019968
406 Ga0070662_100034018
407 Ga0070681_10000089
408 Ga0070681_10005756
409 Ga0070681_10009628
410 Ga0068867_100147184
411 Ga0070706_100000555
412 Ga0070706_100002872
413 Ga0070706_100008193
414 Ga0070706_100017296
415 Ga0070706_100152443
416 Ga0070707_100054137
417 Ga0070698_100007364
418 Ga0070698_100007629
419 Ga0070698_100010525
420 Ga0070698_100041741
421 Ga0070699_100003583
422 Ga0070699_100013145
423 Ga0070699_100065644
424 Ga0070679_100000014
425 Ga0070679_100188505
426 Ga0070697_100000160
427 Ga0070697_100000229
428 Ga0070697_100004763
429 Ga0068853_100013109
430 Ga0070672_100144593
431 Ga0070686_100000928
432 Ga0070686_100001875
433 Ga0070696_100048578
434 Ga0070693_100010761
435 Ga0070693_100020572
436 Ga0070693_100051764
437 Ga0070704_100070781
438 Ga0070664_100001972
439 Ga0070664_100039468
440 Ga0068857_100007753
441 Ga0068856_100022336
442 Ga0070702_100002731
443 Ga0068859_100028380
444 Ga0068859_100042761
445 Ga0068859_100066342
446 Ga0068859_100105290
447 Ga0068859_100205923
448 Ga0068864_100002051
449 Ga0068864_100010313
450 Ga0068864_100022280
451 Ga0068864_100138888
452 Ga0068861_100027973
453 Ga0068861_100028620
454 Ga0068851_10025269
455 Ga0068870_10003606
456 Ga0068870_10019645
457 Ga0068863_100041917
458 Ga0068863_100084634
459 Ga0068858_100025414
460 Ga0068858_100042765
461 Ga0068860_100013121
462 Ga0068860_100028690
463 Ga0068860_100087402
464 Ga0068860_100098177
465 Ga0068860_100116947
466 Ga0068860_100179517
467 Ga0081540_1020560
468 Ga0081539_10000502
469 Ga0081539_10000612
470 Ga0081539_10001231
471 Ga0070716_100066603
472 Ga0097621_100010220
473 Ga0068871_100087357
474 Ga0075430_100012400
475 Ga0075430_100070311
476 Ga0075431_100013609
477 Ga0075433_10015577
478 Ga0075433_10026381
479 Ga0075433_10094157
480 Ga0075434_100012491
481 Ga0075429_100011985
482 Ga0097620_100028382
483 Ga0097620_100042762
484 Ga0097620_100066346
485 Ga0097620_100105279
486 Ga0097620_100205900
487 Ga0075435_100021746
488 Ga0075435_100113712
489 Ga0105244_10055638
490 Ga0105240_10026736
491 Ga0105240_10055286
492 Ga0111539_10002599
493 Ga0111539_10008452
494 Ga0111539_10127819
495 Ga0111539_10180912
496 Ga0111539_10185878
497 Ga0111539_10213099
498 Ga0105245_10018988
499 Ga0105247_10012219
500 Ga0105247_10087606
501 Ga0114129_10003316
502 Ga0114129_10005912
503 Ga0114129_10017815
504 Ga0114129_10028517
505 Ga0114129_10065702
506 Ga0114129_10073046
507 Ga0114129_10094960
508 Ga0114129_10226867
509 Ga0114129_10278926
510 Ga0114129_10385751
511 Ga0105243_10015779
512 Ga0105243_10067934
513 Ga0105243_10151360
514 Ga0105241_10186677
515 Ga0105248_10006385
516 Ga0105248_10007714
517 Ga0105248_10015032
518 Ga0105248_10016846
519 Ga0105248_10069238
520 Ga0105248_10159141
521 Ga0105237_10002216
522 Ga0105237_10018174
523 Ga0105237_10077164
524 Ga0105238_10004301
525 Ga0105249_10000025
526 Ga0105249_10007814
527 Ga0105249_10028582
528 Ga0105249_10090608
529 Ga0105239_10070621
530 Ga0105239_10099378
531 Ga0157373_10002880
532 Ga0157373_10034014
533 Ga0157374_10026868
534 Ga0157374_10040966
535 Ga0157378_10004573
536 Ga0157378_10008763
537 Ga0157378_10012993
538 Ga0157378_10103617
539 Ga0163162_10000002
540 Ga0163162_10000734
541 Ga0163162_10007470
542 Ga0163162_10085355
543 Ga0157372_10194265
544 Ga0157375_10010202
545 Ga0157375_10030863
546 Ga0157375_10165607
547 Ga0157375_10239598
548 Ga0163163_10000934
549 Ga0163163_10001951
550 Ga0163163_10004215
551 Ga0163163_10010341
552 Ga0163163_10078093
553 Ga0157380_10000207
554 Ga0157380_10001969
555 Ga0157380_10005379
556 Ga0157380_10008210
557 Ga0157380_10010718
558 Ga0157380_10012652
559 Ga0157380_10018571
560 Ga0157380_10057308
561 Ga0157379_10081876
562 Ga0157379_10091135
563 Ga0157376_10006987
564 Ga0157376_10024699
565 Ga0163161_10004656
566 Ga0163161_10090690
567 Ga0207656_10029801
568 Ga0207653_10007997
569 Ga0207710_10001268
570 Ga0207647_10005301
571 Ga0207643_10004212
572 Ga0207643_10010694
573 Ga0207643_10021028
574 Ga0207684_10000085
575 Ga0207684_10009660
576 Ga0207684_10019079
577 Ga0207707_10000016
578 Ga0207660_10002053
579 Ga0207662_10001801
580 Ga0207662_10006350
581 Ga0207652_10000126
582 Ga0207681_10000395
583 Ga0207681_10065546
584 Ga0207694_10015947
585 Ga0207650_10000011
586 Ga0207650_10063021
587 Ga0207650_10087997
588 Ga0207659_10010474
589 Ga0207644_10025512
590 Ga0207644_10087563
591 Ga0207704_10019864
592 Ga0207704_10078855
593 Ga0207704_10158249
594 Ga0207691_10006377
595 Ga0207711_10002913
596 Ga0207711_10085143
597 Ga0207711_10107907
598 Ga0207711_10133280
599 Ga0207689_10004678
600 Ga0207689_10005863
601 Ga0207689_10023005
602 Ga0207689_10028815
603 Ga0207689_10029992
604 Ga0207651_10019581
605 Ga0207712_10000333
606 Ga0207712_10018209
607 Ga0207668_10010410
608 Ga0207658_10015645
609 Ga0207677_10007021
610 Ga0207703_10067830
611 Ga0207703_10099227
612 Ga0207703_10192967
613 Ga0207708_10000091
614 Ga0207708_10002429
615 Ga0207708_10006493
616 Ga0207708_10019704
617 Ga0207708_10029450
618 Ga0207708_10057816
619 Ga0207708_10132745
620 Ga0207702_10087080
621 Ga0207641_10143128
622 Ga0207648_10012177
623 Ga0207676_10005227
624 Ga0207676_10039546
625 Ga0207674_10000169
626 Ga0207674_10031586
627 Ga0207674_10108870
628 Ga0207674_10112746
629 Ga0207675_100001843
630 Ga0207675_100004607
631 Ga0207675_100006458
632 Ga0207675_100040428
633 Ga0207675_100056763
634 Ga0207428_10014879
635 Ga0268265_10009238
636 Ga0268264_10026762
637 Ga0268264_10044705
638 Ga0268264_10094074
639 Ga0307408_100004717
640 Ga0307405_10067017
641 Ga0307413_10045076
642 Ga0307406_10001225
643 Ga0307407_10002413
644 Ga0307412_10007018
645 Ga0307409_100071310
646 Ga0307414_10043517
647 Ga0307411_10013240
648 Ga0307415_100017711
649 Ga0373941_0019130
650 Ga0395900_0065476
651 Ga0395898_0041770
652 Ga0395898_0145869
653 Ga0242420_000945
654 Ga0439458_0004168
655 Ga0495580_0119995
656 Ga0495663_0000097
657 Ga0495598_0000088
658 Ga0495621_0000647
659 Ga0496102_0034583
660 Ga0496104_0018017
661 Ga0496104_0042366
662 Ga0496109_0105628
663 Ga0496112_0083139
664 Ga0496112_0129099
665 Ga0501299_002635
666 Ga0501038_0049929
667 Ga0501217_000177
668 Ga0501217_002433
669 Ga0501224_001709
670 Ga0501227_002079
671 Ga0501233_006129
672 Ga0501235_003770
673 Ga0501243_002505
674 Ga0501249_004237
675 Ga0501257_017255
676 Ga0501225_0016524
677 Ga0501234_001379
678 nmdc:mga05p37_19064_c2
679 nmdc:mga05p37_22778_c1
680 nmdc:mga0qj67_21514_c1
681 nmdc:mga0qj67_31522_c1
682 nmdc:mga08y16_101523_c1
683 nmdc:mga08y16_7854_c1
684 nmdc:mga08y16_9981_c1
685 nmdc:mga0a205_16699_c1
686 nmdc:mga0a205_3680_c1

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00990

GGDEF

Diguanylate cyclase, GGDEF domain

342

500

0.97

PF13492

GAF_3

GAF domain

189

331

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
4iob-assembly1.cif.gz_A crystal structure of the ggdef domain of pa1120 (yfin or tpbb) from pseudomonas aeruginosa at 2.7 ang. 0.9701 330 485
7a7e-assembly1.cif.gz_A structure of a delta-n mutant - e232start - of pa1120 (tpbb or yfin) from pseudomonas aeruginosa (pao1) comprising only the ggdef domain 0.9634 330 485
4urs-assembly1.cif.gz_A crystal structure of ggdef domain from t.maritima 0.9585 330 475
5m3c-assembly1.cif.gz_B structure of the hybrid domain (ggdef-eal) of pa0575 from pseudomonas aeruginosa pao1 at 2.8 ang. with gtp and ca2+ bound to the active site of the ggdef domain 0.955 330 485
3ign-assembly1.cif.gz_A crystal structure of the ggdef domain from marinobacter aquaeolei diguanylate cyclase complexed with c-di-gmp - northeast structural genomics consortium target mqr89a 0.9537 330 485
ID Description Score Start End Superfamily
af_P77334_235_407_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9805 330 485 3.30.70.270
4iobA00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9701 330 485 3.30.70.270
af_Q2G061_179_351_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9637 330 483 3.30.70.270
4ursA00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9585 330 475 3.30.70.270
af_P38097_675_846_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9562 330 485 3.30.70.270
ID Description Score Start End GO Terms
AF-A0A258X1K8-F1-model_v4 GGDEF domain-containing protein 0.9747 330 486 GO:0005886
GO:0043709
GO:0052621
GO:1902201
AF-A0A3B1CSZ2-F1-model_v4 GGDEF domain-containing protein 0.9739 326 485 GO:0052621
AF-A0A6C2CP25-F1-model_v4 diguanylate cyclase (EC 2.7.7.65) 0.9729 330 485 GO:0005886
GO:0043709
GO:0052621
GO:1902201
AF-Q0F205-F1-model_v4 diguanylate cyclase (EC 2.7.7.65) 0.9721 330 485 GO:0005886
GO:0043709
GO:0052621
GO:1902201
AF-A0A1H0D8E4-F1-model_v4 Diguanylate cyclase (GGDEF) domain-containing protein 0.9717 326 484 GO:0016020
GO:0052621

Map