F410864

General Info

Members Datasets Scaffolds Average Seq Length
332 188 664 310

Family's Representative Sequence

Representative Sequence 3300005549|Ga0070704_100106601|Ga0070704_1001066013
Length 335
Sequence VNAGDAGIRLDKFLASPQRLGSRSRVIEALDKGKVFVNEQEASRRDAGTMLRAGNVVRVWMDRPGSAKRRPRAAVEAGNVEILYEDDALMVVNKPPGLLSVPLPRQPDAGSAYDDLETHLRPRGKRKPLVVHRIDRDTSGLVVFARTIRAQQALKDQFRRREPERVYLAVVYGHPEPREGTWRDHLVWDSKALIQKRTRAGDPAAKEAISRYRVLETLEGASLIEVRLVTGKRNQIRLQAKLRGHTLVGEQRYVYGPDALRSIECSRQALHAHRLSFQHPVDGRPLTFEAPLPADLTALVKRLRSARRAEAEGGGGPATPAGRSRRAVPSVPVRR

Samples

Sample ID Description Type Environment
1 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
2 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
7 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
8 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
13 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
14 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
15 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
16 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
17 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
18 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
19 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
20 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
21 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
22 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
23 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
24 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
25 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
26 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
27 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
28 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
29 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
30 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
31 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
32 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
33 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
34 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
35 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
36 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
37 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
38 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
39 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
40 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
41 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
42 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
43 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
44 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
45 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
46 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
47 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
48 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
49 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
50 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
51 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
52 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
53 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
54 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
55 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
56 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
57 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
58 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
59 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
60 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
61 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
62 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
63 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
64 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
65 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
66 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
67 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
68 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
69 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
70 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
71 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
72 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
73 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
74 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
75 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
76 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
77 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
78 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
79 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
80 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
81 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
82 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
83 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
84 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
85 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
121 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
122 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
123 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
124 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
125 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
126 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
127 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
128 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
129 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
130 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
131 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
132 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
133 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
134 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
135 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
136 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
137 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
138 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
139 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
140 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
141 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
142 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
143 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
144 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
145 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
146 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
147 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
149 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
150 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
152 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
153 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
154 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
155 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
156 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
157 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
158 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
159 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
160 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
161 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
162 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
163 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
164 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
165 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
166 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
167 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
168 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
169 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
170 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
171 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
172 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
173 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
174 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
175 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
176 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
177 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
178 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
179 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
180 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
181 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
182 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
183 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
184 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
185 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
186 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
187 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
188 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.9
Nodule 0
Rhizoplane 3.31
Rhizosphere 95.78
Stem 0
Stem Tuber 0
Unclassified 18.37

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070704_100106601 3300005549 Unclassified 2124
2 MRS1b_contig_1367392 2162886011 Bacteria 1148
3 Ga0065704_10146067 3300005289 Bacteria 1470
4 Ga0065712_10002358 3300005290 Bacteria 6587
5 Ga0065712_10069100 3300005290 Bacteria 8020
6 Ga0065715_10000198 3300005293 Bacteria 35810
7 Ga0065715_10001865 3300005293 Bacteria 8038
8 Ga0065715_10002959 3300005293 Bacteria 5291
9 Ga0065715_10099671 3300005293 Bacteria 3383
10 Ga0065715_10125796 3300005293 Bacteria 2118
11 Ga0065707_10002872 3300005295 Bacteria 6182
12 Ga0065707_10096359 3300005295 Bacteria 3277
13 Ga0070676_10036848 3300005328 Bacteria 2818
14 Ga0070690_100190132 3300005330 Unclassified 1423
15 Ga0070670_100001380 3300005331 Bacteria 19454
16 Ga0070670_100072726 3300005331 Bacteria 2953
17 Ga0070670_100296041 3300005331 Unclassified 1415
18 Ga0070677_10074317 3300005333 Bacteria 1437
19 Ga0068869_100026653 3300005334 Bacteria 4024
20 Ga0068869_100048998 3300005334 Unclassified 3057
21 Ga0070666_10041860 3300005335 Bacteria 3062
22 Ga0070691_10008757 3300005341 Bacteria 4631
23 Ga0070661_100102723 3300005344 Bacteria 2128
24 Ga0070668_100029967 3300005347 Unclassified 4134
25 Ga0070668_100087544 3300005347 Unclassified 2451
26 Ga0070668_100108750 3300005347 Bacteria 2205
27 Ga0070669_100012671 3300005353 Bacteria 5985
28 Ga0070669_100041412 3300005353 Bacteria 3350
29 Ga0070669_100042530 3300005353 Unclassified 3307
30 Ga0070669_100170132 3300005353 Bacteria 1698
31 Ga0070675_100021744 3300005354 Bacteria 5125
32 Ga0070675_100036743 3300005354 Bacteria 3988
33 Ga0070674_100000712 3300005356 Bacteria 16929
34 Ga0070674_100173581 3300005356 Bacteria 1646
35 Ga0070674_100256078 3300005356 Bacteria 1377
36 Ga0070673_100054042 3300005364 Bacteria 3158
37 Ga0070673_100089812 3300005364 Bacteria 2509
38 Ga0070688_100041573 3300005365 Bacteria 2823
39 Ga0070688_100215446 3300005365 Bacteria 1351
40 Ga0070659_100186726 3300005366 Bacteria 1703
41 Ga0070667_100008932 3300005367 Bacteria 8296
42 Ga0070705_100032208 3300005440 Bacteria 2911
43 Ga0070700_100040250 3300005441 Unclassified 2860
44 Ga0070708_100526428 3300005445 Bacteria 1115
45 Ga0070678_100021370 3300005456 Bacteria 4267
46 Ga0070678_100403649 3300005456 Bacteria 1188
47 Ga0070662_100122794 3300005457 Bacteria 1992
48 Ga0070681_10002327 3300005458 Bacteria 17373
49 Ga0070681_10235546 3300005458 Bacteria 1745
50 Ga0070685_10016936 3300005466 Bacteria 3891
51 Ga0070685_10126566 3300005466 Unclassified 1592
52 Ga0070707_100000764 3300005468 Bacteria 31781
53 Ga0070707_100148997 3300005468 Bacteria 2278
54 Ga0070707_100267941 3300005468 Bacteria 1661
55 Ga0070698_100218630 3300005471 Bacteria 1839
56 Ga0070698_100415317 3300005471 Unclassified 1280
57 Ga0070699_100000181 3300005518 Bacteria 61068
58 Ga0070699_100062367 3300005518 Unclassified 3231
59 Ga0070684_100117187 3300005535 Bacteria 2393
60 Ga0070697_100002846 3300005536 Bacteria 13299
61 Ga0068853_100402701 3300005539 Bacteria 1281
62 Ga0070672_100017252 3300005543 Bacteria 5191
63 Ga0070672_100065491 3300005543 Bacteria 2874
64 Ga0070695_100091566 3300005545 Bacteria 2031
65 Ga0070696_100003751 3300005546 Bacteria 10150
66 Ga0070696_100004289 3300005546 Bacteria 9501
67 Ga0070665_100002571 3300005548 Bacteria 19891
68 Ga0070665_100082860 3300005548 Bacteria 3212
69 Ga0070704_100045082 3300005549 Bacteria 3067
70 Ga0070704_100099896 3300005549 Bacteria 2183
71 Ga0068855_100243584 3300005563 Bacteria 2008
72 Ga0070664_100545935 3300005564 Unclassified 1071
73 Ga0068857_100177472 3300005577 Unclassified 1938
74 Ga0068854_100086244 3300005578 Bacteria 2327
75 Ga0070702_100001633 3300005615 Bacteria 9285
76 Ga0068852_100211279 3300005616 Bacteria 1841
77 Ga0068859_100166806 3300005617 Bacteria 2282
78 Ga0068864_100006204 3300005618 Bacteria 9799
79 Ga0068861_100029610 3300005719 Bacteria 4006
80 Ga0068861_100051219 3300005719 Bacteria 3133
81 Ga0068870_10025580 3300005840 Bacteria 2932
82 Ga0068863_100016079 3300005841 Bacteria 7176
83 Ga0068863_100032269 3300005841 Bacteria 4992
84 Ga0068863_100171453 3300005841 Bacteria 2081
85 Ga0068858_100094497 3300005842 Unclassified 2785
86 Ga0068858_100177711 3300005842 Unclassified 2009
87 Ga0068860_100117558 3300005843 Bacteria 2544
88 Ga0068860_100256017 3300005843 Unclassified 1705
89 Ga0068862_100002252 3300005844 Bacteria 17259
90 Ga0068862_100044018 3300005844 Unclassified 3807
91 Ga0068862_100080677 3300005844 Bacteria 2821
92 Ga0068862_100087232 3300005844 Bacteria 2714
93 Ga0068862_100134243 3300005844 Unclassified 2192
94 Ga0068862_100361053 3300005844 Bacteria 1350
95 Ga0081455_10023042 3300005937 Bacteria 5804
96 Ga0097621_100124600 3300006237 Bacteria 2188
97 Ga0068871_100104059 3300006358 Bacteria 2381
98 Ga0068871_100241142 3300006358 Bacteria 1572
99 Ga0075428_100000781 3300006844 Bacteria 33166
100 Ga0075428_100051334 3300006844 Bacteria 4523
101 Ga0075428_100056496 3300006844 Bacteria 4299
102 Ga0075428_100080175 3300006844 Bacteria 3562
103 Ga0075428_100179053 3300006844 Unclassified 2295
104 Ga0075428_100525393 3300006844 Unclassified 1266
105 Ga0075430_100113798 3300006846 Bacteria 2255
106 Ga0075430_100169109 3300006846 Bacteria 1818
107 Ga0075431_100015812 3300006847 Bacteria 7650
108 Ga0075431_100052670 3300006847 Bacteria 4196
109 Ga0075431_100220255 3300006847 Bacteria 1936
110 Ga0075434_100081226 3300006871 Bacteria 3239
111 Ga0075434_100186801 3300006871 Unclassified 2093
112 Ga0075429_100038253 3300006880 Bacteria 4177
113 Ga0075429_100085583 3300006880 Unclassified 2748
114 Ga0068865_100291324 3300006881 Bacteria 1303
115 Ga0068865_100344225 3300006881 Bacteria 1206
116 Ga0075436_100028694 3300006914 Bacteria 3827
117 Ga0097620_100166814 3300006931 Bacteria 2282
118 Ga0075435_100003357 3300007076 Bacteria 10850
119 Ga0075435_100029719 3300007076 Bacteria 4291
120 Ga0075435_100038570 3300007076 Unclassified 3809
121 Ga0105240_10239767 3300009093 Bacteria 2103
122 Ga0105240_10334546 3300009093 Bacteria 1722
123 Ga0111539_10005096 3300009094 Bacteria 17047
124 Ga0111539_10012645 3300009094 Bacteria 10574
125 Ga0111539_10038649 3300009094 Bacteria 5758
126 Ga0105247_10034941 3300009101 Bacteria 3062
127 Ga0114129_10000143 3300009147 Bacteria 75185
128 Ga0114129_10004353 3300009147 Bacteria 19992
129 Ga0114129_10009358 3300009147 Bacteria 13970
130 Ga0114129_10034562 3300009147 Bacteria 7141
131 Ga0114129_10060020 3300009147 Bacteria 5317
132 Ga0114129_10103252 3300009147 Bacteria 3941
133 Ga0114129_10104653 3300009147 Bacteria 3911
134 Ga0114129_10144885 3300009147 Bacteria 3254
135 Ga0114129_10149504 3300009147 Bacteria 3197
136 Ga0114129_10536707 3300009147 Unclassified 1523
137 Ga0105243_10598023 3300009148 Bacteria 1061
138 Ga0105242_10011326 3300009176 Bacteria 6855
139 Ga0105242_10064382 3300009176 Bacteria 3022
140 Ga0105248_10002375 3300009177 Bacteria 20906
141 Ga0105248_10029582 3300009177 Bacteria 6111
142 Ga0105238_10084764 3300009551 Bacteria 3158
143 Ga0105249_10175422 3300009553 Bacteria 2082
144 Ga0105249_10205726 3300009553 Bacteria 1929
145 Ga0157369_10422675 3300013105 Unclassified 1381
146 Ga0157374_10129577 3300013296 Bacteria 2441
147 Ga0157374_10368991 3300013296 Bacteria 1428
148 Ga0157378_10244453 3300013297 Unclassified 1716
149 Ga0163162_10087691 3300013306 Bacteria 3191
150 Ga0157372_10164743 3300013307 Bacteria 2563
151 Ga0157375_10093132 3300013308 Bacteria 3079
152 Ga0157375_10126544 3300013308 Unclassified 2670
153 Ga0163163_10008561 3300014325 Bacteria 9094
154 Ga0163163_10058466 3300014325 Bacteria 3813
155 Ga0163163_10103942 3300014325 Bacteria 2865
156 Ga0157380_10027141 3300014326 Bacteria 4352
157 Ga0157380_10095367 3300014326 Unclassified 2464
158 Ga0157380_10327458 3300014326 Bacteria 1423
159 Ga0157380_10499096 3300014326 Bacteria 1182
160 Ga0157379_10013642 3300014968 Bacteria 7121
161 Ga0157379_10026951 3300014968 Bacteria 5116
162 Ga0157379_10054639 3300014968 Bacteria 3568
163 Ga0157376_10066123 3300014969 Bacteria 3055
164 Ga0157376_10091648 3300014969 Bacteria 2633
165 Ga0207697_10025222 3300025315 Bacteria 2431
166 Ga0207682_10054182 3300025893 Bacteria 1666
167 Ga0207680_10018511 3300025903 Bacteria 3704
168 Ga0207680_10043291 3300025903 Bacteria 2640
169 Ga0207645_10015186 3300025907 Bacteria 5128
170 Ga0207645_10063927 3300025907 Bacteria 2351
171 Ga0207643_10032293 3300025908 Bacteria 2923
172 Ga0207695_10382903 3300025913 Bacteria 1292
173 Ga0207662_10031416 3300025918 Bacteria 3085
174 Ga0207657_10019151 3300025919 Bacteria 6509
175 Ga0207646_10000780 3300025922 Bacteria 41281
176 Ga0207646_10134846 3300025922 Bacteria 2223
177 Ga0207646_10238349 3300025922 Bacteria 1643
178 Ga0207681_10003371 3300025923 Bacteria 10003
179 Ga0207681_10088451 3300025923 Bacteria 2206
180 Ga0207681_10126270 3300025923 Unclassified 1884
181 Ga0207650_10134026 3300025925 Bacteria 1941
182 Ga0207659_10033805 3300025926 Unclassified 3522
183 Ga0207644_10196619 3300025931 Unclassified 1588
184 Ga0207690_10153449 3300025932 Unclassified 1709
185 Ga0207686_10032191 3300025934 Bacteria 3119
186 Ga0207686_10186302 3300025934 Bacteria 1476
187 Ga0207669_10381816 3300025937 Bacteria 1098
188 Ga0207704_10071065 3300025938 Bacteria 2207
189 Ga0207704_10190746 3300025938 Unclassified 1491
190 Ga0207704_10430306 3300025938 Bacteria 1048
191 Ga0207691_10004130 3300025940 Bacteria 14112
192 Ga0207691_10004755 3300025940 Bacteria 13127
193 Ga0207691_10021490 3300025940 Bacteria 6093
194 Ga0207711_10025831 3300025941 Bacteria 4925
195 Ga0207711_10070192 3300025941 Bacteria 3038
196 Ga0207711_10092376 3300025941 Bacteria 2663
197 Ga0207667_10420613 3300025949 Bacteria 1360
198 Ga0207651_10028330 3300025960 Bacteria 3532
199 Ga0207651_10053351 3300025960 Bacteria 2763
200 Ga0207712_10156880 3300025961 Bacteria 1764
201 Ga0207712_10280487 3300025961 Bacteria 1360
202 Ga0207668_10400866 3300025972 Bacteria 1160
203 Ga0207668_10542241 3300025972 Unclassified 1006
204 Ga0207640_10073656 3300025981 Bacteria 2308
205 Ga0207658_10013533 3300025986 Bacteria 5577
206 Ga0207677_10206527 3300026023 Unclassified 1565
207 Ga0207703_10144266 3300026035 Bacteria 2069
208 Ga0207708_10032874 3300026075 Bacteria 3939
209 Ga0207708_10048965 3300026075 Unclassified 3218
210 Ga0207708_10104963 3300026075 Bacteria 2190
211 Ga0207702_10042734 3300026078 Bacteria 3803
212 Ga0207641_10001538 3300026088 Bacteria 22573
213 Ga0207641_10044562 3300026088 Bacteria 3731
214 Ga0207648_10063267 3300026089 Bacteria 3225
215 Ga0207676_10066031 3300026095 Bacteria 2883
216 Ga0207674_10373693 3300026116 Bacteria 1378
217 Ga0207675_100029664 3300026118 Bacteria 5094
218 Ga0207675_100039949 3300026118 Unclassified 4378
219 Ga0207675_100393446 3300026118 Bacteria 1365
220 Ga0207683_10051696 3300026121 Bacteria 3600
221 Ga0207428_10205758 3300027907 Bacteria 1480
222 Ga0268266_10385105 3300028379 Bacteria 1323
223 Ga0268266_10420160 3300028379 Unclassified 1267
224 Ga0268265_10001443 3300028380 Bacteria 20048
225 Ga0268265_10086697 3300028380 Unclassified 2489
226 Ga0268265_10117752 3300028380 Unclassified 2182
227 Ga0268264_10097644 3300028381 Bacteria 2547
228 Ga0307412_10030516 3300031911 Bacteria 3395
229 Ga0307416_100184602 3300032002 Bacteria 1959
230 Ga0307416_100248382 3300032002 Unclassified 1730
231 Ga0307415_100049761 3300032126 Bacteria 2836
232 Ga0373945_0010132 3300035116 Unclassified 3099
233 Ga0373931_0126714 3300035691 Unclassified 1465
234 Ga0373937_0129446 3300036401 Bacteria 2357
235 Ga0373925_0045889 3300037068 Bacteria 3247
236 Ga0450894_001479 3300042131 Bacteria 3361
237 Ga0450893_0020517 3300042532 Bacteria 1135
238 Ga0495603_0004757 3300046455 Bacteria 8106
239 Ga0495629_0000628 3300046459 Bacteria 28692
240 Ga0495594_0036250 3300046499 Bacteria 2689
241 Ga0495640_0043136 3300046533 Bacteria 3143
242 Ga0495658_0036995 3300046683 Bacteria 2696
243 Ga0495669_0052487 3300046684 Bacteria 1832
244 Ga0495676_0033588 3300047321 Bacteria 4318
245 Ga0496101_0288729 3300048904 Bacteria 1283
246 Ga0496104_0306861 3300048907 Bacteria 1500
247 Ga0496108_0024731 3300048911 Bacteria 4946
248 Ga0496109_0000735 3300048912 Bacteria 27260
249 Ga0496109_0125319 3300048912 Bacteria 2395
250 Ga0496109_0229350 3300048912 Unclassified 1747
251 Ga0496110_0065282 3300048913 Bacteria 3218
252 Ga0496110_0177380 3300048913 Bacteria 1934
253 Ga0496112_0000222 3300048915 Bacteria 36912
254 Ga0496112_0033277 3300048915 Bacteria 5010
255 Ga0496114_0033220 3300048917 Bacteria 4250
256 Ga0501032_0053562 3300049569 Bacteria 2717
257 Ga0501033_0007176 3300049570 Bacteria 8695
258 Ga0501036_0007390 3300049572 Bacteria 8953
259 Ga0501037_0283813 3300049573 Unclassified 1153
260 Ga0501038_0093852 3300049574 Bacteria 2509
261 Ga0501039_0199940 3300049575 Unclassified 1571
262 Ga0501040_0006524 3300049576 Bacteria 7575
263 Ga0501040_0023411 3300049576 Bacteria 4142
264 Ga0501040_0324209 3300049576 Unclassified 1102
265 Ga0501041_0034731 3300049577 Bacteria 3053
266 Ga0501041_0120935 3300049577 Unclassified 1627
267 Ga0501041_0229801 3300049577 Unclassified 1165
268 Ga0501042_0003119 3300049578 Bacteria 10315
269 Ga0501042_0019614 3300049578 Bacteria 4699
270 Ga0501046_0021077 3300049580 Bacteria 5382
271 Ga0501048_0003720 3300049582 Bacteria 11626
272 Ga0501068_0005209 3300049584 Bacteria 7092
273 Ga0501070_0276747 3300049586 Unclassified 1370
274 Ga0501071_0383287 3300049587 Unclassified 1072
275 Ga0501072_0041146 3300049588 Bacteria 3629
276 Ga0501072_0085180 3300049588 Unclassified 2506
277 Ga0501074_0014919 3300049590 Bacteria 5653
278 Ga0501075_0001214 3300049591 Bacteria 16690
279 Ga0501075_0033389 3300049591 Bacteria 3828
280 Ga0501075_0195427 3300049591 Bacteria 1543
281 Ga0501076_0000080 3300049592 Bacteria 49660
282 Ga0501076_0026255 3300049592 Unclassified 4509
283 Ga0501076_0439780 3300049592 Unclassified 1073
284 Ga0501077_0038604 3300049593 Unclassified 3041
285 Ga0501077_0122706 3300049593 Unclassified 1647
286 Ga0501079_0000657 3300049741 Bacteria 23080
287 Ga0501079_0036218 3300049741 Bacteria 3801
288 Ga0501081_0000298 3300049743 Bacteria 26578
289 Ga0501081_0078911 3300049743 Bacteria 2302
290 Ga0501083_0170778 3300049744 Bacteria 1421
291 Ga0501035_0282117 3300049822 Unclassified 1404
292 Ga0501045_0000973 3300049824 Bacteria 18739
293 Ga0501045_0018942 3300049824 Unclassified 4901
294 Ga0501045_0046037 3300049824 Unclassified 3177
295 Ga0501045_0047193 3300049824 Bacteria 3137
296 nmdc:mga05p37_103074_c1 3300050507 Bacteria 3513
297 nmdc:mga05p37_132767_c1 3300050507 Bacteria 3054
298 nmdc:mga05p37_143341_c1 3300050507 Bacteria 2926
299 nmdc:mga05p37_35931_c1 3300050507 Bacteria 6080
300 nmdc:mga05p37_38657_c1 3300050507 Bacteria 5855
301 nmdc:mga05p37_47954_c1 3300050507 Bacteria 5253
302 nmdc:mga05p37_55383_c1 3300050507 Bacteria 4880
303 nmdc:mga09592_39511_c1 3300050508 Bacteria 3963
304 nmdc:mga09592_57619_c1 3300050508 Bacteria 3284
305 nmdc:mga09592_8607_c1 3300050508 Bacteria 8301
306 nmdc:mga0qj67_428305_c1 3300050509 Bacteria 1067
307 nmdc:mga06r32_17210_c1 3300050510 Bacteria 6598
308 nmdc:mga06r32_47746_c1 3300050510 Bacteria 4090
309 nmdc:mga08y16_12129_c1 3300050511 Bacteria 9056
310 nmdc:mga08y16_28190_c1 3300050511 Bacteria 5919
311 nmdc:mga08y16_29688_c1 3300050511 Bacteria 5758
312 nmdc:mga08y16_5422_c1 3300050511 Bacteria 13335
313 nmdc:mga08y16_57133_c2 3300050511 Unclassified 3358
314 nmdc:mga0n895_141460_c1 3300050512 Bacteria 2435
315 nmdc:mga0rr50_36355_c1 3300050513 Bacteria 3546
316 nmdc:mga0rr50_71079_c1 3300050513 Bacteria 2654
317 nmdc:mga08x19_2548_c1 3300050514 Bacteria 11075
318 nmdc:mga08x19_8843_c1 3300050514 Bacteria 6007
319 nmdc:mga0a205_116118_c1 3300050515 Bacteria 2575
320 nmdc:mga0a205_530826_c1 3300050515 Bacteria 1033
321 Ga0500555_000050 3300053103 Bacteria 60626
322 Ga0500616_0000598 3300053153 Bacteria 43770
323 Ga0500645_000060 3300053730 Bacteria 89018
324 Ga0501084_0003571 3300054114 Bacteria 12624
325 Ga0501084_0072530 3300054114 Bacteria 2884
326 Ga0590071_002388 3300059421 Bacteria 4726
327 Ga0590074_000628 3300059423 Bacteria 5318
328 Ga0590075_001899 3300059424 Bacteria 5069
329 Ga0501082_0000427 3300060353 Bacteria 37290
330 Ga0501082_0144873 3300060353 Unclassified 2062
331 Ga0530510_0001287 3300061734 Bacteria 16754
332 Ga0530510_0031935 3300061734 Bacteria 3786
333 Ga0070704_100106601
334 MRS1b_contig_1367392
335 Ga0065704_10146067
336 Ga0065712_10002358
337 Ga0065712_10069100
338 Ga0065715_10000198
339 Ga0065715_10001865
340 Ga0065715_10002959
341 Ga0065715_10099671
342 Ga0065715_10125796
343 Ga0065707_10002872
344 Ga0065707_10096359
345 Ga0070676_10036848
346 Ga0070690_100190132
347 Ga0070670_100001380
348 Ga0070670_100072726
349 Ga0070670_100296041
350 Ga0070677_10074317
351 Ga0068869_100026653
352 Ga0068869_100048998
353 Ga0070666_10041860
354 Ga0070691_10008757
355 Ga0070661_100102723
356 Ga0070668_100029967
357 Ga0070668_100087544
358 Ga0070668_100108750
359 Ga0070669_100012671
360 Ga0070669_100041412
361 Ga0070669_100042530
362 Ga0070669_100170132
363 Ga0070675_100021744
364 Ga0070675_100036743
365 Ga0070674_100000712
366 Ga0070674_100173581
367 Ga0070674_100256078
368 Ga0070673_100054042
369 Ga0070673_100089812
370 Ga0070688_100041573
371 Ga0070688_100215446
372 Ga0070659_100186726
373 Ga0070667_100008932
374 Ga0070705_100032208
375 Ga0070700_100040250
376 Ga0070708_100526428
377 Ga0070678_100021370
378 Ga0070678_100403649
379 Ga0070662_100122794
380 Ga0070681_10002327
381 Ga0070681_10235546
382 Ga0070685_10016936
383 Ga0070685_10126566
384 Ga0070707_100000764
385 Ga0070707_100148997
386 Ga0070707_100267941
387 Ga0070698_100218630
388 Ga0070698_100415317
389 Ga0070699_100000181
390 Ga0070699_100062367
391 Ga0070684_100117187
392 Ga0070697_100002846
393 Ga0068853_100402701
394 Ga0070672_100017252
395 Ga0070672_100065491
396 Ga0070695_100091566
397 Ga0070696_100003751
398 Ga0070696_100004289
399 Ga0070665_100002571
400 Ga0070665_100082860
401 Ga0070704_100045082
402 Ga0070704_100099896
403 Ga0068855_100243584
404 Ga0070664_100545935
405 Ga0068857_100177472
406 Ga0068854_100086244
407 Ga0070702_100001633
408 Ga0068852_100211279
409 Ga0068859_100166806
410 Ga0068864_100006204
411 Ga0068861_100029610
412 Ga0068861_100051219
413 Ga0068870_10025580
414 Ga0068863_100016079
415 Ga0068863_100032269
416 Ga0068863_100171453
417 Ga0068858_100094497
418 Ga0068858_100177711
419 Ga0068860_100117558
420 Ga0068860_100256017
421 Ga0068862_100002252
422 Ga0068862_100044018
423 Ga0068862_100080677
424 Ga0068862_100087232
425 Ga0068862_100134243
426 Ga0068862_100361053
427 Ga0081455_10023042
428 Ga0097621_100124600
429 Ga0068871_100104059
430 Ga0068871_100241142
431 Ga0075428_100000781
432 Ga0075428_100051334
433 Ga0075428_100056496
434 Ga0075428_100080175
435 Ga0075428_100179053
436 Ga0075428_100525393
437 Ga0075430_100113798
438 Ga0075430_100169109
439 Ga0075431_100015812
440 Ga0075431_100052670
441 Ga0075431_100220255
442 Ga0075434_100081226
443 Ga0075434_100186801
444 Ga0075429_100038253
445 Ga0075429_100085583
446 Ga0068865_100291324
447 Ga0068865_100344225
448 Ga0075436_100028694
449 Ga0097620_100166814
450 Ga0075435_100003357
451 Ga0075435_100029719
452 Ga0075435_100038570
453 Ga0105240_10239767
454 Ga0105240_10334546
455 Ga0111539_10005096
456 Ga0111539_10012645
457 Ga0111539_10038649
458 Ga0105247_10034941
459 Ga0114129_10000143
460 Ga0114129_10004353
461 Ga0114129_10009358
462 Ga0114129_10034562
463 Ga0114129_10060020
464 Ga0114129_10103252
465 Ga0114129_10104653
466 Ga0114129_10144885
467 Ga0114129_10149504
468 Ga0114129_10536707
469 Ga0105243_10598023
470 Ga0105242_10011326
471 Ga0105242_10064382
472 Ga0105248_10002375
473 Ga0105248_10029582
474 Ga0105238_10084764
475 Ga0105249_10175422
476 Ga0105249_10205726
477 Ga0157369_10422675
478 Ga0157374_10129577
479 Ga0157374_10368991
480 Ga0157378_10244453
481 Ga0163162_10087691
482 Ga0157372_10164743
483 Ga0157375_10093132
484 Ga0157375_10126544
485 Ga0163163_10008561
486 Ga0163163_10058466
487 Ga0163163_10103942
488 Ga0157380_10027141
489 Ga0157380_10095367
490 Ga0157380_10327458
491 Ga0157380_10499096
492 Ga0157379_10013642
493 Ga0157379_10026951
494 Ga0157379_10054639
495 Ga0157376_10066123
496 Ga0157376_10091648
497 Ga0207697_10025222
498 Ga0207682_10054182
499 Ga0207680_10018511
500 Ga0207680_10043291
501 Ga0207645_10015186
502 Ga0207645_10063927
503 Ga0207643_10032293
504 Ga0207695_10382903
505 Ga0207662_10031416
506 Ga0207657_10019151
507 Ga0207646_10000780
508 Ga0207646_10134846
509 Ga0207646_10238349
510 Ga0207681_10003371
511 Ga0207681_10088451
512 Ga0207681_10126270
513 Ga0207650_10134026
514 Ga0207659_10033805
515 Ga0207644_10196619
516 Ga0207690_10153449
517 Ga0207686_10032191
518 Ga0207686_10186302
519 Ga0207669_10381816
520 Ga0207704_10071065
521 Ga0207704_10190746
522 Ga0207704_10430306
523 Ga0207691_10004130
524 Ga0207691_10004755
525 Ga0207691_10021490
526 Ga0207711_10025831
527 Ga0207711_10070192
528 Ga0207711_10092376
529 Ga0207667_10420613
530 Ga0207651_10028330
531 Ga0207651_10053351
532 Ga0207712_10156880
533 Ga0207712_10280487
534 Ga0207668_10400866
535 Ga0207668_10542241
536 Ga0207640_10073656
537 Ga0207658_10013533
538 Ga0207677_10206527
539 Ga0207703_10144266
540 Ga0207708_10032874
541 Ga0207708_10048965
542 Ga0207708_10104963
543 Ga0207702_10042734
544 Ga0207641_10001538
545 Ga0207641_10044562
546 Ga0207648_10063267
547 Ga0207676_10066031
548 Ga0207674_10373693
549 Ga0207675_100029664
550 Ga0207675_100039949
551 Ga0207675_100393446
552 Ga0207683_10051696
553 Ga0207428_10205758
554 Ga0268266_10385105
555 Ga0268266_10420160
556 Ga0268265_10001443
557 Ga0268265_10086697
558 Ga0268265_10117752
559 Ga0268264_10097644
560 Ga0307412_10030516
561 Ga0307416_100184602
562 Ga0307416_100248382
563 Ga0307415_100049761
564 Ga0373945_0010132
565 Ga0373931_0126714
566 Ga0373937_0129446
567 Ga0373925_0045889
568 Ga0450894_001479
569 Ga0450893_0020517
570 Ga0495603_0004757
571 Ga0495629_0000628
572 Ga0495594_0036250
573 Ga0495640_0043136
574 Ga0495658_0036995
575 Ga0495669_0052487
576 Ga0495676_0033588
577 Ga0496101_0288729
578 Ga0496104_0306861
579 Ga0496108_0024731
580 Ga0496109_0000735
581 Ga0496109_0125319
582 Ga0496109_0229350
583 Ga0496110_0065282
584 Ga0496110_0177380
585 Ga0496112_0000222
586 Ga0496112_0033277
587 Ga0496114_0033220
588 Ga0501032_0053562
589 Ga0501033_0007176
590 Ga0501036_0007390
591 Ga0501037_0283813
592 Ga0501038_0093852
593 Ga0501039_0199940
594 Ga0501040_0006524
595 Ga0501040_0023411
596 Ga0501040_0324209
597 Ga0501041_0034731
598 Ga0501041_0120935
599 Ga0501041_0229801
600 Ga0501042_0003119
601 Ga0501042_0019614
602 Ga0501046_0021077
603 Ga0501048_0003720
604 Ga0501068_0005209
605 Ga0501070_0276747
606 Ga0501071_0383287
607 Ga0501072_0041146
608 Ga0501072_0085180
609 Ga0501074_0014919
610 Ga0501075_0001214
611 Ga0501075_0033389
612 Ga0501075_0195427
613 Ga0501076_0000080
614 Ga0501076_0026255
615 Ga0501076_0439780
616 Ga0501077_0038604
617 Ga0501077_0122706
618 Ga0501079_0000657
619 Ga0501079_0036218
620 Ga0501081_0000298
621 Ga0501081_0078911
622 Ga0501083_0170778
623 Ga0501035_0282117
624 Ga0501045_0000973
625 Ga0501045_0018942
626 Ga0501045_0046037
627 Ga0501045_0047193
628 nmdc:mga05p37_103074_c1
629 nmdc:mga05p37_132767_c1
630 nmdc:mga05p37_143341_c1
631 nmdc:mga05p37_35931_c1
632 nmdc:mga05p37_38657_c1
633 nmdc:mga05p37_47954_c1
634 nmdc:mga05p37_55383_c1
635 nmdc:mga09592_39511_c1
636 nmdc:mga09592_57619_c1
637 nmdc:mga09592_8607_c1
638 nmdc:mga0qj67_428305_c1
639 nmdc:mga06r32_17210_c1
640 nmdc:mga06r32_47746_c1
641 nmdc:mga08y16_12129_c1
642 nmdc:mga08y16_28190_c1
643 nmdc:mga08y16_29688_c1
644 nmdc:mga08y16_5422_c1
645 nmdc:mga08y16_57133_c2
646 nmdc:mga0n895_141460_c1
647 nmdc:mga0rr50_36355_c1
648 nmdc:mga0rr50_71079_c1
649 nmdc:mga08x19_2548_c1
650 nmdc:mga08x19_8843_c1
651 nmdc:mga0a205_116118_c1
652 nmdc:mga0a205_530826_c1
653 Ga0500555_000050
654 Ga0500616_0000598
655 Ga0500645_000060
656 Ga0501084_0003571
657 Ga0501084_0072530
658 Ga0590071_002388
659 Ga0590074_000628
660 Ga0590075_001899
661 Ga0501082_0000427
662 Ga0501082_0144873
663 Ga0530510_0001287
664 Ga0530510_0031935

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00849

PseudoU_synth_2

RNA pseudouridylate synthase

88

242

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
2i82-assembly2.cif.gz_B crystal structure of pseudouridine synthase rlua: indirect sequence readout through protein-induced rna structure 0.898 85 302
2i82-assembly2.cif.gz_B crystal structure of pseudouridine synthase rlua: indirect sequence readout through protein-induced rna structure 0.882 85 302
8d8k-assembly1.cif.gz_D yeast mitochondrial small subunit assembly intermediate (state 2) 0.8782 20 71
4v73-assembly1.cif.gz_AD e. coli 70s-fmetval-trnaval-trnafmet complex in hybrid pre-translocation state (pre5a) 0.8716 20 70
1v9k-assembly2.cif.gz_B the crystal structure of the catalytic domain of pseudouridine synthase rluc from escherichia coli 0.8683 92 317
ID Description Score Start End Superfamily
af_Q12069_190_394_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9034 93 260 3.30.2350.10
af_Q2FZQ6_75_272_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9019 92 300 3.30.2350.10
af_Q2FZ78_82_304_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.8962 92 317 3.30.2350.10
af_Q2FZQ6_75_272_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.8888 92 300 3.30.2350.10
af_Q2FZ78_82_304_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.8884 92 317 3.30.2350.10
ID Description Score Start End GO Terms
AF-A0A1Q6QS06-F1-model_v4 Pseudouridine synthase RsuA/RluA-like domain-containing protein 0.9463 138 303 GO:0000455
GO:0003723
GO:0009982
GO:0140098
AF-K1TU66-F1-model_v4 Ribosomal large subunit pseudouridine synthase D 0.9379 90 262 GO:0001522
GO:0003723
GO:0009982
AF-A0A357NB12-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9372 119 313 GO:0000455
GO:0003723
GO:0009982
GO:0140098
AF-A0A496S2J0-F1-model_v4 Pseudouridine synthase RsuA/RluA-like domain-containing protein 0.936 85 312 GO:0001522
GO:0003723
GO:0006396
GO:0009982
GO:0140098
AF-A0A0R2UY94-F1-model_v4 Pseudouridine synthase 0.9348 144 302 GO:0001522
GO:0003723
GO:0006396
GO:0009982
GO:0140098

Map