F409857

General Info

Members Datasets Scaffolds Average Seq Length
329 212 658 690

Family's Representative Sequence

Representative Sequence 3300049582|Ga0501048_0045517|Ga0501048_0045517_508_2586
Length 635
Sequence VSTKPTTTDLEWTELDQRAVDTARVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADADWVGRDRFVLSAGHSSLTLYIQLYLAGFGVELDDLKSFRTWGSKTPGHPEYGHTVGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAARGESPFDHYVYCIAGDGCLQEGISAEASSMAGHQKLGNLILLWDDNHISIEGDTETAVSEDTVKRYEAYGWHVQRVEPQENGDLDPRAIHAAIEAAKQVTDRPSFIAMRSIIAWPAPNAQNTEAAHGSALGEDEVAATKRVLGFDPEKSFEVSEEVLAHTRKALDRGAEAKAAWNKGYEAWRAANPQWGGSADLAGSNNTTIDKTSSFLPEGNPGRTIHFGIREHSMAAEMNGIALHGNTRVYGGTFLVFSDYMRNAVRLSALMQLPVTYVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNLVRPADANETALAWAEILRRHGTRPAPHGLALTRQGVPTYPANPETVRGGYVLQEASTGSPEVVLIGTGSEVQLAVGARERLEAEGIPTRVVSMPSVEWFEEQDAEYRERVLPSAVKARVAVEAGIGLTWYRFVGDAGRIVSLEHFGASADAKTLFAEFGFTAEHVAAAAKESLAAARG

Samples

Sample ID Description Type Environment
1 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
4 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
5 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
6 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
7 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
8 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
9 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
10 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
11 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
12 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
13 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
14 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
15 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
16 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
17 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
18 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
19 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
20 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
21 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
22 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
23 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
24 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
25 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
26 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
27 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
28 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
29 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
30 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
31 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
32 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
33 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
34 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
35 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
36 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
37 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
38 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
39 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
40 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
41 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
42 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
43 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
44 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
45 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
46 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
47 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
48 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
49 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
50 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
51 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
52 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
53 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
54 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
55 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
56 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
57 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
58 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
59 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
60 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
61 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
62 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
63 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
64 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
65 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
66 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
67 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
68 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
69 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
70 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
71 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
72 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
73 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
74 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
75 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
76 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
77 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
78 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
79 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
80 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
81 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
82 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
83 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
84 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
85 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
86 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
87 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
88 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
89 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
90 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
91 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
92 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
93 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
94 3300049539 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
95 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
110 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
111 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
112 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
113 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
114 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
115 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
116 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
117 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
118 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
119 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
120 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
121 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
124 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
125 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
126 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
127 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
128 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
129 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
130 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
131 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
132 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
133 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
134 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
135 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
136 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
137 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
138 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
139 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
140 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
141 2643221548 Streptomyces sp. Root55 Isolate Unclassified
142 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
143 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
144 2643221647 Streptomyces sp. Root369 Isolate Unclassified
145 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
146 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
147 2643221714 Streptomyces sp. Root264 Isolate Unclassified
148 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
149 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
150 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
151 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
152 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
153 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
154 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
155 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
156 2808606448 Streptomyces sp. 193411 Isolate Unclassified
157 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
158 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
159 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
160 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
161 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
162 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
163 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
164 2862574272 Streptomyces sp. AcE210 Isolate Nodule
165 2862705112 Streptomyces triticirhizae NEAU-YY642 Isolate Rhizosphere
166 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
167 2867428634 Streptomyces sp. RP5T Isolate Unclassified
168 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
169 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
170 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
171 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
172 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
173 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
174 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
175 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
176 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
177 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
178 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
179 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
180 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
181 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
182 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
183 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
184 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
185 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
186 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
187 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
188 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
189 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
190 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
191 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
192 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
193 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
194 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
195 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
196 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
197 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
198 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
199 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
200 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
201 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
202 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified
203 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
204 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
205 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
206 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
207 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
208 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
209 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
210 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
211 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
212 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 70.52
Metatranscriptomes 0.3
Isolates 29.18

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.26
Nodule 1.52
Rhizoplane 0.3
Rhizosphere 77.2
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501048_0045517 3300049582 Bacteria 3134
2 JGI24737J22298_10007983 3300001990 Bacteria 3556
3 Ga0068859_100005912 3300005617 Bacteria 12419
4 Ga0068863_100009585 3300005841 Bacteria 9447
5 Ga0068858_100014593 3300005842 Bacteria 7401
6 Ga0075368_10008582 3300006042 Bacteria 3645
7 Ga0075367_10005809 3300006178 Bacteria 6176
8 Ga0097620_100005912 3300006931 Bacteria 12419
9 Ga0182008_10002136 3300014497 Bacteria 12605
10 Ga0182007_10001633 3300015262 Bacteria 11886
11 Ga0183367_1001 3300015688 Bacteria 1225545
12 Ga0209758_1007794 3300025297 Bacteria 7152
13 Ga0207703_10065403 3300026035 Bacteria 2988
14 Ga0207641_10017566 3300026088 Bacteria 5857
15 Ga0307515_10000441 3300028794 Bacteria 99819
16 Ga0307515_10031278 3300028794 Bacteria 8884
17 Ga0307511_10006319 3300030521 Bacteria 11946
18 Ga0307513_10005869 3300031456 Bacteria 16132
19 Ga0307513_10094385 3300031456 Bacteria 3037
20 Ga0307509_10018524 3300031507 Bacteria 7981
21 Ga0307508_10018977 3300031616 Bacteria 6247
22 Ga0307508_10030848 3300031616 Bacteria 4844
23 Ga0307508_10050107 3300031616 Bacteria 3717
24 Ga0307508_10067225 3300031616 Bacteria 3153
25 Ga0307514_10007078 3300031649 Bacteria 9685
26 Ga0307514_10034590 3300031649 Bacteria 4026
27 Ga0307516_10006097 3300031730 Bacteria 14231
28 Ga0307507_10008958 3300033179 Bacteria 13577
29 Ga0307507_10023452 3300033179 Bacteria 6774
30 Ga0307510_10024302 3300033180 Bacteria 7004
31 Ga0395898_0003419 3300037466 Bacteria 17774
32 Ga0395901_0034155 3300038443 Bacteria 5252
33 Ga0439436_0000166 3300041404 Bacteria 15489
34 Ga0439433_0003069 3300041999 Bacteria 3575
35 Ga0439448_0001325 3300042005 Bacteria 6336
36 Ga0439432_019000 3300042006 Bacteria 2293
37 Ga0439449_0002882 3300042007 Bacteria 6690
38 Ga0439449_0010989 3300042007 Bacteria 3416
39 Ga0439455_0000095 3300042012 Bacteria 8582
40 Ga0439457_001434 3300042014 Bacteria 7171
41 Ga0439457_010458 3300042014 Bacteria 2132
42 Ga0450894_000154 3300042131 Bacteria 12033
43 Ga0450898_000603 3300042134 Bacteria 4310
44 Ga0450899_000205 3300042135 Bacteria 6118
45 Ga0450903_000192 3300042138 Bacteria 13562
46 Ga0439458_0001095 3300042157 Bacteria 6908
47 Ga0466969_0003320 3300044656 Bacteria 8561
48 Ga0466972_0017168 3300044658 Bacteria 3620
49 Ga0466965_0020031 3300044683 Bacteria 3214
50 Ga0466966_0001295 3300044684 Bacteria 16018
51 Ga0466966_0002519 3300044684 Bacteria 12007
52 Ga0466966_0005253 3300044684 Bacteria 8514
53 Ga0466966_0039469 3300044684 Bacteria 3040
54 Ga0466961_0004602 3300044693 Bacteria 8658
55 Ga0466961_0010648 3300044693 Bacteria 5870
56 Ga0466963_0001552 3300044694 Bacteria 12451
57 Ga0466971_0001250 3300044719 Bacteria 10589
58 Ga0466970_0002956 3300044765 Bacteria 8239
59 Ga0466970_0008956 3300044765 Bacteria 5047
60 Ga0466957_0000616 3300044842 Bacteria 17989
61 Ga0466957_0046089 3300044842 Bacteria 2646
62 Ga0466960_0002316 3300044901 Bacteria 7146
63 Ga0466959_0000612 3300045049 Bacteria 20862
64 Ga0466959_0002009 3300045049 Bacteria 12836
65 Ga0466959_0025722 3300045049 Bacteria 4365
66 Ga0466959_0027878 3300045049 Bacteria 4189
67 Ga0466967_0003460 3300045976 Bacteria 10306
68 Ga0495592_0007118 3300046454 Bacteria 8373
69 Ga0495592_0011557 3300046454 Bacteria 6683
70 Ga0495592_0094888 3300046454 Bacteria 2134
71 Ga0495603_0003057 3300046455 Bacteria 9926
72 Ga0495603_0010523 3300046455 Bacteria 5604
73 Ga0495603_0019586 3300046455 Bacteria 4096
74 Ga0495603_0024352 3300046455 Bacteria 3659
75 Ga0495603_0027857 3300046455 Bacteria 3407
76 Ga0495629_0001210 3300046459 Bacteria 20267
77 Ga0495629_0028651 3300046459 Bacteria 3952
78 Ga0495629_0042777 3300046459 Bacteria 3182
79 Ga0495629_0065363 3300046459 Bacteria 2539
80 Ga0495638_0032754 3300046460 Bacteria 3328
81 Ga0495651_0007103 3300046462 Bacteria 8559
82 Ga0495651_0063877 3300046462 Bacteria 2813
83 Ga0495580_0059535 3300046472 Bacteria 2684
84 Ga0495582_0010165 3300046473 Bacteria 5183
85 Ga0495639_0004499 3300046475 Bacteria 5978
86 Ga0495662_0004079 3300046476 Bacteria 7353
87 Ga0495662_0023418 3300046476 Bacteria 2982
88 Ga0495664_0004530 3300046477 Bacteria 7600
89 Ga0495585_0014838 3300046492 Bacteria 4532
90 Ga0495594_0002955 3300046499 Bacteria 8812
91 Ga0495594_0006657 3300046499 Bacteria 5946
92 Ga0495596_0013601 3300046500 Bacteria 3445
93 Ga0495616_0013790 3300046513 Bacteria 4547
94 Ga0495628_0029288 3300046516 Bacteria 4465
95 Ga0495628_0038232 3300046516 Bacteria 3843
96 Ga0495630_0016089 3300046517 Bacteria 5466
97 Ga0495630_0028340 3300046517 Bacteria 4162
98 Ga0495643_0002349 3300046522 Bacteria 15174
99 Ga0495643_0019377 3300046522 Bacteria 3936
100 Ga0495652_0073758 3300046529 Bacteria 2840
101 Ga0495586_0016311 3300046535 Bacteria 3951
102 Ga0495587_0002646 3300046536 Bacteria 11963
103 Ga0495587_0014984 3300046536 Bacteria 4848
104 Ga0495625_0007615 3300046660 Bacteria 9399
105 Ga0495635_0000520 3300046663 Bacteria 24388
106 Ga0495635_0021076 3300046663 Bacteria 4542
107 Ga0495635_0031308 3300046663 Bacteria 3693
108 Ga0495588_0002564 3300046674 Bacteria 7768
109 Ga0495588_0002833 3300046674 Bacteria 7457
110 Ga0495657_0003233 3300046675 Bacteria 13393
111 Ga0495657_0008226 3300046675 Bacteria 7993
112 Ga0495657_0017933 3300046675 Bacteria 5133
113 Ga0495657_0042933 3300046675 Bacteria 3084
114 Ga0495623_0047512 3300046679 Bacteria 2724
115 Ga0495646_0001970 3300046680 Bacteria 12382
116 Ga0495646_0004975 3300046680 Bacteria 8391
117 Ga0495613_0001595 3300046689 Bacteria 17192
118 Ga0495613_0013437 3300046689 Bacteria 6081
119 Ga0495613_0041205 3300046689 Bacteria 3420
120 Ga0495670_0004198 3300046691 Bacteria 7058
121 Ga0495671_0009167 3300046692 Bacteria 5538
122 Ga0495589_0013864 3300046794 Bacteria 4155
123 Ga0495589_0029389 3300046794 Bacteria 2771
124 Ga0495600_0013454 3300046809 Bacteria 5141
125 Ga0495600_0021087 3300046809 Bacteria 4170
126 Ga0495581_0023185 3300047315 Bacteria 3596
127 Ga0495604_0005551 3300047317 Bacteria 10002
128 Ga0495604_0016806 3300047317 Bacteria 5853
129 Ga0495604_0067793 3300047317 Bacteria 2710
130 Ga0495636_0002182 3300047318 Bacteria 7501
131 Ga0495636_0003507 3300047318 Bacteria 6088
132 Ga0495676_0002779 3300047321 Bacteria 15733
133 Ga0495676_0007323 3300047321 Bacteria 10124
134 Ga0495676_0008160 3300047321 Bacteria 9605
135 Ga0495676_0009639 3300047321 Bacteria 8786
136 Ga0495680_0014414 3300047322 Bacteria 6844
137 Ga0495687_004847 3300047443 Bacteria 8843
138 Ga0495687_018711 3300047443 Bacteria 3415
139 Ga0495675_0017535 3300047444 Bacteria 4538
140 Ga0495685_000221 3300047447 Bacteria 19406
141 Ga0495685_007477 3300047447 Bacteria 3608
142 Ga0495681_0005609 3300047470 Bacteria 8370
143 Ga0495681_0006380 3300047470 Bacteria 7759
144 Ga0495686_0012966 3300047472 Bacteria 5809
145 Ga0495686_0030332 3300047472 Bacteria 3512
146 Ga0495593_0000873 3300047673 Bacteria 17468
147 Ga0495593_0021067 3300047673 Bacteria 3644
148 Ga0495602_0032202 3300048088 Bacteria 4941
149 Ga0495614_0003707 3300048089 Bacteria 6860
150 Ga0495614_0019610 3300048089 Bacteria 2926
151 Ga0495614_0039731 3300048089 Bacteria 2019
152 Ga0501323_000125 3300049539 Bacteria 4336
153 Ga0501031_0002123 3300049568 Bacteria 12502
154 Ga0501032_0004079 3300049569 Bacteria 11066
155 Ga0501032_0007939 3300049569 Bacteria 7730
156 Ga0501032_0019085 3300049569 Bacteria 4797
157 Ga0501033_0007663 3300049570 Bacteria 8381
158 Ga0501033_0021257 3300049570 Bacteria 4895
159 Ga0501033_0027215 3300049570 Bacteria 4300
160 Ga0501034_0002507 3300049571 Bacteria 22041
161 Ga0501034_0008248 3300049571 Bacteria 11030
162 Ga0501034_0019593 3300049571 Bacteria 6918
163 Ga0501034_0033472 3300049571 Bacteria 5213
164 Ga0501036_0012876 3300049572 Bacteria 6944
165 Ga0501036_0032959 3300049572 Bacteria 4379
166 Ga0501036_0046054 3300049572 Bacteria 3693
167 Ga0501037_0004880 3300049573 Bacteria 9755
168 Ga0501037_0008803 3300049573 Bacteria 7398
169 Ga0501038_0015275 3300049574 Bacteria 6980
170 Ga0501038_0037604 3300049574 Bacteria 4243
171 Ga0501038_0045688 3300049574 Bacteria 3800
172 Ga0501038_0046164 3300049574 Bacteria 3777
173 Ga0501038_0048073 3300049574 Bacteria 3693
174 Ga0501038_0048796 3300049574 Bacteria 3662
175 Ga0501038_0103141 3300049574 Bacteria 2372
176 Ga0501039_0010651 3300049575 Bacteria 7005
177 Ga0501040_0003567 3300049576 Bacteria 10063
178 Ga0501041_0001588 3300049577 Bacteria 12659
179 Ga0501042_0007844 3300049578 Bacteria 7018
180 Ga0501043_0004752 3300049579 Bacteria 11017
181 Ga0501043_0008825 3300049579 Bacteria 7935
182 Ga0501043_0016827 3300049579 Bacteria 5731
183 Ga0501043_0029025 3300049579 Bacteria 4343
184 Ga0501046_0005788 3300049580 Bacteria 11031
185 Ga0501046_0013477 3300049580 Bacteria 6920
186 Ga0501046_0031777 3300049580 Bacteria 4277
187 Ga0501046_0060161 3300049580 Bacteria 2973
188 Ga0501047_0000055 3300049581 Bacteria 144149
189 Ga0501047_0001216 3300049581 Bacteria 25535
190 Ga0501047_0010994 3300049581 Bacteria 8565
191 Ga0501048_0004365 3300049582 Bacteria 10766
192 Ga0501048_0080108 3300049582 Bacteria 2304
193 Ga0501067_0001877 3300049583 Bacteria 11545
194 Ga0501068_0000061 3300049584 Bacteria 42895
195 Ga0501069_0012272 3300049585 Bacteria 4553
196 Ga0501069_0052429 3300049585 Bacteria 2272
197 Ga0501070_0001129 3300049586 Bacteria 23942
198 Ga0501070_0009498 3300049586 Bacteria 8221
199 Ga0501070_0011229 3300049586 Bacteria 7563
200 Ga0501070_0021752 3300049586 Bacteria 5375
201 Ga0501071_0000111 3300049587 Bacteria 32014
202 Ga0501072_0005562 3300049588 Bacteria 9585
203 Ga0501073_0010029 3300049589 Bacteria 6964
204 Ga0501074_0002104 3300049590 Bacteria 13743
205 Ga0501076_0007178 3300049592 Bacteria 8100
206 Ga0501077_0011444 3300049593 Bacteria 5541
207 Ga0501079_0018017 3300049741 Bacteria 5392
208 Ga0501080_0038728 3300049742 Bacteria 4450
209 Ga0501035_0003632 3300049822 Bacteria 14717
210 Ga0501035_0007178 3300049822 Bacteria 10424
211 Ga0501035_0013913 3300049822 Bacteria 7424
212 Ga0501035_0076168 3300049822 Bacteria 2966
213 Ga0501044_0009018 3300049823 Bacteria 10906
214 Ga0501044_0024578 3300049823 Bacteria 6393
215 Ga0501044_0031984 3300049823 Bacteria 5531
216 Ga0501044_0069908 3300049823 Bacteria 3573
217 Ga0501044_0088537 3300049823 Bacteria 3125
218 Ga0501045_0011850 3300049824 Bacteria 6127
219 Ga0501045_0021217 3300049824 Bacteria 4644
220 Ga0501045_0033009 3300049824 Bacteria 3753
221 nmdc:mga06z11_4229_c1 3300050494 Bacteria 5627
222 Ga0500640_004273 3300053095 Bacteria 5164
223 Ga0500560_003527 3300053107 Bacteria 3178
224 Ga0500628_001077 3300053129 Bacteria 4771
225 Ga0500658_0002174 3300053134 Bacteria 7620
226 Ga0500561_0000602 3300053137 Bacteria 5775
227 Ga0500573_0013167 3300053140 Bacteria 4657
228 Ga0500573_0041032 3300053140 Bacteria 2672
229 Ga0500600_0016498 3300053149 Bacteria 4470
230 Ga0500616_0006951 3300053153 Bacteria 7287
231 Ga0500634_0003601 3300053161 Bacteria 6941
232 Ga0501084_0008261 3300054114 Bacteria 8586
233 Ga0501082_0010785 3300060353 Bacteria 7869
234 2547412091 2547132111 Bacteria 8013147
235 2554259133 2554235005 Bacteria 6457341
236 2585307625 2582581313 Bacteria 10042643
237 2585311217 2582581313 Bacteria 10042643
238 2585311862 2582581314 Bacteria 11452267
239 2616693497 2616644814 Bacteria 11555299
240 2643759120 2643221548 Bacteria 8053412
241 2644017884 2643221601 Bacteria 7493239
242 2644180828 2643221631 Bacteria 8168043
243 2644266457 2643221647 Bacteria 10741251
244 2644438027 2643221678 Bacteria 9540101
245 2644463462 2643221682 Bacteria 6743283
246 2644631934 2643221714 Bacteria 9015452
247 2784591822 2784132148 Bacteria 8627943
248 2785339904 2784746763 Bacteria 9783172
249 2785345180 2784746763 Bacteria 9783172
250 2785372808 2784746768 Bacteria 10036182
251 2786675165 2786546132 Bacteria 10419719
252 2793981216 2791355406 Bacteria 11364898
253 2804844222 2802429296 Bacteria 7227771
254 2808845169 2808606359 Bacteria 9866990
255 2808848182 2808606359 Bacteria 9866990
256 2808914764 2808606375 Bacteria 9466072
257 2809230755 2808606448 Bacteria 8656184
258 2809235442 2808606448 Bacteria 8656184
259 2812354533 2811994879 Bacteria 9313447
260 2812359821 2811994879 Bacteria 9313447
261 2819740154 2818991472 Bacteria 10089953
262 2852636154 2852635781 Bacteria 8251373
263 2852638201 2852635781 Bacteria 8251373
264 2862283215 2862281513 Bacteria 9621493
265 2862291560 2862290372 Bacteria 7471434
266 2862388918 2862382967 Bacteria 10317375
267 2862389140 2862382967 Bacteria 10317375
268 2862508581 2862507626 Bacteria 9425308
269 2862583497 2862574272 Bacteria 10567477
270 2862707271 2862705112 Bacteria 6563286
271 2863406437 2863404153 Bacteria 9672205
272 2867428735 2867428634 Bacteria 9590268
273 2873157222 2873151551 Bacteria 8625867
274 2877677882 2877676314 Bacteria 9512378
275 2912716140 2912715099 Bacteria 9460473
276 2912721865 2912715099 Bacteria 9460473
277 2912725671 2912723979 Bacteria 8557534
278 2912729055 2912723979 Bacteria 8557534
279 2919471021 2919468124 Bacteria 9133025
280 2935394334 2935390628 Bacteria 7043367
281 2946066087 2946064051 Bacteria 8957905
282 2946071134 2946064051 Bacteria 8957905
283 2947225597 2947224130 Bacteria 9938529
284 2947231287 2947224130 Bacteria 9938529
285 2954004569 2954002825 Bacteria 9173742
286 2954009772 2954002825 Bacteria 9173742
287 2954382672 2954380949 Bacteria 10050426
288 2954680210 2954673503 Bacteria 9685905
289 2954683941 2954682443 Bacteria 9862841
290 2954693495 2954691527 Bacteria 10720516
291 2954708589 2954701450 Bacteria 10834262
292 2954713158 2954711539 Bacteria 10867210
293 2954723118 2954721474 Bacteria 10456478
294 2954738711 2954731030 Bacteria 10243860
295 2954742025 2954740390 Bacteria 10229294
296 2954757569 2954749733 Bacteria 10366972
297 2954761003 2954759201 Bacteria 9358192
298 2966603922 2966598605 Bacteria 7676064
299 2990065446 2990059506 Bacteria 9321252
300 2990066315 2990059506 Bacteria 9321252
301 2997606765 2997600082 Bacteria 9896405
302 2997607659 2997600082 Bacteria 9896405
303 3006323281 3006321560 Bacteria 8247479
304 3006395513 3006393351 Bacteria 6615579
305 3006396323 3006393351 Bacteria 6615579
306 3006426395 3006425503 Bacteria 6491253
307 3006492995 3006486233 Bacteria 8157040
308 3006496527 3006493962 Bacteria 8825450
309 3006501695 3006493962 Bacteria 8825450
310 8008489696 8008485437 Bacteria 7198341
311 8008561869 8008558824 Bacteria 10610750
312 8008564114 8008558824 Bacteria 10610750
313 8008575970 8008574985 Bacteria 7815457
314 8023628030 8023623736 Bacteria 8593882
315 8023631572 8023623736 Bacteria 8593882
316 8025419642 8025413630 Bacteria 7014048
317 8025528728 8025524527 Bacteria 7197316
318 8033687336 8033684223 Bacteria 6906479
319 8047899790 8047893842 Bacteria 11723082
320 8048137458 8048127548 Bacteria 11053136
321 8048359140 8048356638 Bacteria 11044339
322 8048376738 8048369669 Bacteria 11666822
323 8048385791 8048379754 Bacteria 11877923
324 8048407731 8048406513 Bacteria 8936924
325 8048410867 8048406513 Bacteria 8936924
326 8054163490 8054160619 Bacteria 7783213
327 8056452232 8056447290 Bacteria 7680491
328 8056667614 8056667051 Bacteria 6953971
329 8056835992 8056829672 Bacteria 9045328
330 Ga0501048_0045517
331 JGI24737J22298_10007983
332 Ga0068859_100005912
333 Ga0068863_100009585
334 Ga0068858_100014593
335 Ga0075368_10008582
336 Ga0075367_10005809
337 Ga0097620_100005912
338 Ga0182008_10002136
339 Ga0182007_10001633
340 Ga0183367_1001
341 Ga0209758_1007794
342 Ga0207703_10065403
343 Ga0207641_10017566
344 Ga0307515_10000441
345 Ga0307515_10031278
346 Ga0307511_10006319
347 Ga0307513_10005869
348 Ga0307513_10094385
349 Ga0307509_10018524
350 Ga0307508_10018977
351 Ga0307508_10030848
352 Ga0307508_10050107
353 Ga0307508_10067225
354 Ga0307514_10007078
355 Ga0307514_10034590
356 Ga0307516_10006097
357 Ga0307507_10008958
358 Ga0307507_10023452
359 Ga0307510_10024302
360 Ga0395898_0003419
361 Ga0395901_0034155
362 Ga0439436_0000166
363 Ga0439433_0003069
364 Ga0439448_0001325
365 Ga0439432_019000
366 Ga0439449_0002882
367 Ga0439449_0010989
368 Ga0439455_0000095
369 Ga0439457_001434
370 Ga0439457_010458
371 Ga0450894_000154
372 Ga0450898_000603
373 Ga0450899_000205
374 Ga0450903_000192
375 Ga0439458_0001095
376 Ga0466969_0003320
377 Ga0466972_0017168
378 Ga0466965_0020031
379 Ga0466966_0001295
380 Ga0466966_0002519
381 Ga0466966_0005253
382 Ga0466966_0039469
383 Ga0466961_0004602
384 Ga0466961_0010648
385 Ga0466963_0001552
386 Ga0466971_0001250
387 Ga0466970_0002956
388 Ga0466970_0008956
389 Ga0466957_0000616
390 Ga0466957_0046089
391 Ga0466960_0002316
392 Ga0466959_0000612
393 Ga0466959_0002009
394 Ga0466959_0025722
395 Ga0466959_0027878
396 Ga0466967_0003460
397 Ga0495592_0007118
398 Ga0495592_0011557
399 Ga0495592_0094888
400 Ga0495603_0003057
401 Ga0495603_0010523
402 Ga0495603_0019586
403 Ga0495603_0024352
404 Ga0495603_0027857
405 Ga0495629_0001210
406 Ga0495629_0028651
407 Ga0495629_0042777
408 Ga0495629_0065363
409 Ga0495638_0032754
410 Ga0495651_0007103
411 Ga0495651_0063877
412 Ga0495580_0059535
413 Ga0495582_0010165
414 Ga0495639_0004499
415 Ga0495662_0004079
416 Ga0495662_0023418
417 Ga0495664_0004530
418 Ga0495585_0014838
419 Ga0495594_0002955
420 Ga0495594_0006657
421 Ga0495596_0013601
422 Ga0495616_0013790
423 Ga0495628_0029288
424 Ga0495628_0038232
425 Ga0495630_0016089
426 Ga0495630_0028340
427 Ga0495643_0002349
428 Ga0495643_0019377
429 Ga0495652_0073758
430 Ga0495586_0016311
431 Ga0495587_0002646
432 Ga0495587_0014984
433 Ga0495625_0007615
434 Ga0495635_0000520
435 Ga0495635_0021076
436 Ga0495635_0031308
437 Ga0495588_0002564
438 Ga0495588_0002833
439 Ga0495657_0003233
440 Ga0495657_0008226
441 Ga0495657_0017933
442 Ga0495657_0042933
443 Ga0495623_0047512
444 Ga0495646_0001970
445 Ga0495646_0004975
446 Ga0495613_0001595
447 Ga0495613_0013437
448 Ga0495613_0041205
449 Ga0495670_0004198
450 Ga0495671_0009167
451 Ga0495589_0013864
452 Ga0495589_0029389
453 Ga0495600_0013454
454 Ga0495600_0021087
455 Ga0495581_0023185
456 Ga0495604_0005551
457 Ga0495604_0016806
458 Ga0495604_0067793
459 Ga0495636_0002182
460 Ga0495636_0003507
461 Ga0495676_0002779
462 Ga0495676_0007323
463 Ga0495676_0008160
464 Ga0495676_0009639
465 Ga0495680_0014414
466 Ga0495687_004847
467 Ga0495687_018711
468 Ga0495675_0017535
469 Ga0495685_000221
470 Ga0495685_007477
471 Ga0495681_0005609
472 Ga0495681_0006380
473 Ga0495686_0012966
474 Ga0495686_0030332
475 Ga0495593_0000873
476 Ga0495593_0021067
477 Ga0495602_0032202
478 Ga0495614_0003707
479 Ga0495614_0019610
480 Ga0495614_0039731
481 Ga0501323_000125
482 Ga0501031_0002123
483 Ga0501032_0004079
484 Ga0501032_0007939
485 Ga0501032_0019085
486 Ga0501033_0007663
487 Ga0501033_0021257
488 Ga0501033_0027215
489 Ga0501034_0002507
490 Ga0501034_0008248
491 Ga0501034_0019593
492 Ga0501034_0033472
493 Ga0501036_0012876
494 Ga0501036_0032959
495 Ga0501036_0046054
496 Ga0501037_0004880
497 Ga0501037_0008803
498 Ga0501038_0015275
499 Ga0501038_0037604
500 Ga0501038_0045688
501 Ga0501038_0046164
502 Ga0501038_0048073
503 Ga0501038_0048796
504 Ga0501038_0103141
505 Ga0501039_0010651
506 Ga0501040_0003567
507 Ga0501041_0001588
508 Ga0501042_0007844
509 Ga0501043_0004752
510 Ga0501043_0008825
511 Ga0501043_0016827
512 Ga0501043_0029025
513 Ga0501046_0005788
514 Ga0501046_0013477
515 Ga0501046_0031777
516 Ga0501046_0060161
517 Ga0501047_0000055
518 Ga0501047_0001216
519 Ga0501047_0010994
520 Ga0501048_0004365
521 Ga0501048_0080108
522 Ga0501067_0001877
523 Ga0501068_0000061
524 Ga0501069_0012272
525 Ga0501069_0052429
526 Ga0501070_0001129
527 Ga0501070_0009498
528 Ga0501070_0011229
529 Ga0501070_0021752
530 Ga0501071_0000111
531 Ga0501072_0005562
532 Ga0501073_0010029
533 Ga0501074_0002104
534 Ga0501076_0007178
535 Ga0501077_0011444
536 Ga0501079_0018017
537 Ga0501080_0038728
538 Ga0501035_0003632
539 Ga0501035_0007178
540 Ga0501035_0013913
541 Ga0501035_0076168
542 Ga0501044_0009018
543 Ga0501044_0024578
544 Ga0501044_0031984
545 Ga0501044_0069908
546 Ga0501044_0088537
547 Ga0501045_0011850
548 Ga0501045_0021217
549 Ga0501045_0033009
550 nmdc:mga06z11_4229_c1
551 Ga0500640_004273
552 Ga0500560_003527
553 Ga0500628_001077
554 Ga0500658_0002174
555 Ga0500561_0000602
556 Ga0500573_0013167
557 Ga0500573_0041032
558 Ga0500600_0016498
559 Ga0500616_0006951
560 Ga0500634_0003601
561 Ga0501084_0008261
562 Ga0501082_0010785
563 2547412091
564 2554259133
565 2585307625
566 2585311217
567 2585311862
568 2616693497
569 2643759120
570 2644017884
571 2644180828
572 2644266457
573 2644438027
574 2644463462
575 2644631934
576 2784591822
577 2785339904
578 2785345180
579 2785372808
580 2786675165
581 2793981216
582 2804844222
583 2808845169
584 2808848182
585 2808914764
586 2809230755
587 2809235442
588 2812354533
589 2812359821
590 2819740154
591 2852636154
592 2852638201
593 2862283215
594 2862291560
595 2862388918
596 2862389140
597 2862508581
598 2862583497
599 2862707271
600 2863406437
601 2867428735
602 2873157222
603 2877677882
604 2912716140
605 2912721865
606 2912725671
607 2912729055
608 2919471021
609 2935394334
610 2946066087
611 2946071134
612 2947225597
613 2947231287
614 2954004569
615 2954009772
616 2954382672
617 2954680210
618 2954683941
619 2954693495
620 2954708589
621 2954713158
622 2954723118
623 2954738711
624 2954742025
625 2954757569
626 2954761003
627 2966603922
628 2990065446
629 2990066315
630 2997606765
631 2997607659
632 3006323281
633 3006395513
634 3006396323
635 3006426395
636 3006492995
637 3006496527
638 3006501695
639 8008489696
640 8008561869
641 8008564114
642 8008575970
643 8023628030
644 8023631572
645 8025419642
646 8025528728
647 8033687336
648 8047899790
649 8048137458
650 8048359140
651 8048376738
652 8048385791
653 8048407731
654 8048410867
655 8054163490
656 8056452232
657 8056667614
658 8056835992

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22613

Transketolase_C_1

Transketolase-like TK C-terminal domain

505

618

0.99

PF00456

Transketolase_N

Transketolase, thiamine diphosphate binding domain

15

351

0.96

PF02779

Transket_pyr

Transketolase, pyrimidine binding domain

325

495

0.94

PF02780

Transketolase_C

Transketolase, C-terminal domain

506

622

0.92

PF02775

TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

101

262

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
3rim-assembly2.cif.gz_D crystal structure of mycobacterium tuberculosis transketolase (rv1449c) 0.945 6 685
5i5g-assembly1.cif.gz_A-2 crystal structure of transketolase mutant-r525l from pichia stipitis 0.9405 12 686
8cip-assembly2.cif.gz_D crystal structure of transketolase from geobacillus stearothermophilus 0.9404 13 686
5hje-assembly1.cif.gz_A crystal structure of transketolase complex with sedoheptulose-7-phoaphate from pichia stipitis 0.9403 12 686
5i5e-assembly1.cif.gz_A crystal structure of transketolase mutants-h66/261c complex with xylulose-5-phoaphate from pichia stipitis 0.94 12 686
ID Description Score Start End Superfamily
af_A0A1D6P5P4_1_115_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9484 174 288 3.40.50.970
3rimD01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9332 6 349 3.40.50.970
2e6kB03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9324 560 680 3.40.50.920
af_A0A0R4J2U8_604_731_3.40.50.920 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9306 559 683 3.40.50.920
3hylA03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9298 559 683 3.40.50.920
ID Description Score Start End GO Terms
AF-A0A6G2W253-F1-model_v4 Transketolase 0.9707 520 690 GO:0004802
GO:0005829
GO:0006098
AF-A0A7K2JMP7-F1-model_v4 Transketolase 0.9648 132 502 GO:0000287
GO:0004802
GO:0005829
GO:0006098
AF-A0A0L0KUV5-F1-model_v4 deleted 0.962 9 400
AF-A0A7K3DFD6-F1-model_v4 Transketolase (EC 2.2.1.1) 0.9611 108 690 GO:0000287
GO:0004802
GO:0005829
GO:0006098
AF-A0A286EBC3-F1-model_v4 Transketolase, thiamine diphosphate binding domain 0.9606 9 340 GO:0000287
GO:0004802
GO:0005829
GO:0006098

Map