F408530

General Info

Members Datasets Scaffolds Average Seq Length
326 188 652 227

Family's Representative Sequence

Representative Sequence 3300049583|Ga0501067_0017630|Ga0501067_0017630_10_765
Length 251
Sequence LRKFDGRRREDGVVLTLASSVSERGELTLLRRADGELELRVNGLFAMDTAETTSERLLASASVDAAVEDGRSDGAALRVLVGGLGLGFTVAALLEDRRVAGVVVAEIEPDVVRWHRRGLVPHPSGRAESSLLDDPRVEVLTADVREVVAARSAAYDLVLLDVDNGPGFLLYADNAAIYREPFLATCARAVRSGGVVAIWSASEATALREAMGSVFATTDVRAVPVRLNERRTHYHLYLGRTAAQEGARRAG

Samples

Sample ID Description Type Environment
1 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300001991 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 Metagenome Rhizosphere
4 3300002076 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3 Metagenome Rhizosphere
5 3300002077 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3 Metagenome Rhizosphere
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
9 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
10 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
14 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
15 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
16 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
17 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
18 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
19 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
20 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
21 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
22 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
23 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
24 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
25 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
26 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
27 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
28 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
29 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
30 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
31 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
32 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
33 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
34 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
35 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
36 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
37 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
38 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
39 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
40 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
41 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
42 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
43 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
44 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
45 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
46 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
47 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
48 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
49 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
50 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
51 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
52 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
53 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
54 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
55 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
57 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
58 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
59 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
60 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
61 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
62 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
63 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
64 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
65 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
66 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
67 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
68 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
69 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
70 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
101 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
102 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
104 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
105 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
106 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
107 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
108 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
109 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
110 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
111 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
112 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
113 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
114 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
115 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
116 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
117 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
118 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
119 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
120 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
121 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
122 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
123 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
124 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
125 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
126 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
127 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
128 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
129 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
130 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
131 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
132 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
133 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
134 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
135 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
136 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
137 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
138 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
139 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
140 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
141 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
144 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
146 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
147 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
149 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
150 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
151 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
152 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
153 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
154 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
155 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
156 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
157 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
158 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
159 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
160 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
161 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
162 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
163 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
164 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
165 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
166 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
167 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
168 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
169 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
170 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
171 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
172 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
173 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
174 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
175 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
176 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
177 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
178 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
179 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
180 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
181 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
182 2643221615 Nocardioides sp. Root224 Isolate Unclassified
183 2643221641 Nocardioides sp. Root122 Isolate Unclassified
184 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
185 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
186 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
187 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
188 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root

Type Distribution

Type Percentage (%)
Metagenomes 97.24
Metatranscriptomes 0.61
Isolates 2.15

Biome Distribution

Category Percentage (%)
Aerial Root 0.61
Bulb 0
Endosphere 22.7
Nodule 0
Rhizoplane 3.99
Rhizosphere 69.33
Stem 0
Stem Tuber 0
Unclassified 0.31

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501067_0017630 3300049583 Bacteria 3952
2 LJQas_1004782 3300000549 Bacteria 1747
3 JGI24743J22301_10011462 3300001991 Bacteria 1597
4 JGI24749J21850_1010824 3300002076 Bacteria 1280
5 JGI24744J21845_10003843 3300002077 Bacteria 3105
6 rootL2_10076891 3300003322 Bacteria 1190
7 Ga0070658_10022475 3300005327 Bacteria 5061
8 Ga0070676_10066108 3300005328 Bacteria 2160
9 Ga0070683_100034449 3300005329 Bacteria 4626
10 Ga0070683_100435074 3300005329 Bacteria 1252
11 Ga0070683_100503070 3300005329 Bacteria 1158
12 Ga0070682_100035356 3300005337 Bacteria 3050
13 Ga0068868_100046521 3300005338 Bacteria 3397
14 Ga0070660_100291159 3300005339 Bacteria 1337
15 Ga0070691_10046095 3300005341 Bacteria 2070
16 Ga0070687_100035286 3300005343 Bacteria 2482
17 Ga0070661_100605458 3300005344 Bacteria 886
18 Ga0070692_10014732 3300005345 Bacteria 3681
19 Ga0070675_100050724 3300005354 Bacteria 3408
20 Ga0070674_100075514 3300005356 Bacteria 2394
21 Ga0070673_100291622 3300005364 Bacteria 1434
22 Ga0070659_100153161 3300005366 Bacteria 1882
23 Ga0070659_100474475 3300005366 Bacteria 1064
24 Ga0070667_100186830 3300005367 Bacteria 1834
25 Ga0070701_10007960 3300005438 Bacteria 4560
26 Ga0070700_100001812 3300005441 Bacteria 10776
27 Ga0070663_100240079 3300005455 Bacteria 1430
28 Ga0070663_100351897 3300005455 Bacteria 1193
29 Ga0070663_100388393 3300005455 Bacteria 1138
30 Ga0070662_100243951 3300005457 Bacteria 1442
31 Ga0068867_100043112 3300005459 Bacteria 3303
32 Ga0070684_100055499 3300005535 Bacteria 3454
33 Ga0070684_100062094 3300005535 Bacteria 3272
34 Ga0070672_100039004 3300005543 Bacteria 3634
35 Ga0070686_100212397 3300005544 Bacteria 1394
36 Ga0070693_100104692 3300005547 Bacteria 1730
37 Ga0070693_100243413 3300005547 Bacteria 1189
38 Ga0070704_100141166 3300005549 Bacteria 1881
39 Ga0068855_100209900 3300005563 Bacteria 2189
40 Ga0070664_100002081 3300005564 Bacteria 15990
41 Ga0070664_100746994 3300005564 Bacteria 913
42 Ga0070664_100942538 3300005564 Bacteria 810
43 Ga0068854_100016008 3300005578 Bacteria 4987
44 Ga0070702_100002602 3300005615 Bacteria 7855
45 Ga0068852_100001874 3300005616 Bacteria 14307
46 Ga0068859_100271821 3300005617 Bacteria 1787
47 Ga0068861_100023645 3300005719 Bacteria 4434
48 Ga0068870_10057982 3300005840 Bacteria 2072
49 Ga0068860_100000408 3300005843 Bacteria 55871
50 Ga0081539_10018594 3300005985 Bacteria 4812
51 Ga0075365_10007281 3300006038 Bacteria 6186
52 Ga0075365_10021459 3300006038 Bacteria 4030
53 Ga0075365_10026642 3300006038 Bacteria 3671
54 Ga0075365_10038180 3300006038 Bacteria 3120
55 Ga0075365_10044026 3300006038 Bacteria 2923
56 Ga0075365_10054625 3300006038 Bacteria 2649
57 Ga0075365_10067294 3300006038 Bacteria 2405
58 Ga0075365_10095370 3300006038 Bacteria 2031
59 Ga0075365_10100443 3300006038 Bacteria 1980
60 Ga0075365_10193046 3300006038 Bacteria 1425
61 Ga0075365_10298487 3300006038 Bacteria 1134
62 Ga0075365_10324909 3300006038 Bacteria 1083
63 Ga0075368_10001774 3300006042 Bacteria 6941
64 Ga0075368_10009655 3300006042 Bacteria 3474
65 Ga0075368_10119157 3300006042 Bacteria 1092
66 Ga0075363_100003695 3300006048 Bacteria 6579
67 Ga0075363_100014121 3300006048 Bacteria 3892
68 Ga0075363_100025000 3300006048 Bacteria 3041
69 Ga0075363_100035351 3300006048 Bacteria 2614
70 Ga0075364_10016451 3300006051 Bacteria 4602
71 Ga0075364_10037319 3300006051 Bacteria 3145
72 Ga0075364_10049300 3300006051 Bacteria 2745
73 Ga0075364_10069260 3300006051 Bacteria 2321
74 Ga0075364_10084249 3300006051 Bacteria 2105
75 Ga0075364_10135522 3300006051 Bacteria 1654
76 Ga0075432_10104533 3300006058 Bacteria 1049
77 Ga0075362_10018517 3300006177 Bacteria 2883
78 Ga0075362_10046326 3300006177 Bacteria 1934
79 Ga0075367_10042994 3300006178 Bacteria 2646
80 Ga0075367_10057786 3300006178 Bacteria 2307
81 Ga0075367_10506843 3300006178 Bacteria 766
82 Ga0075370_10009409 3300006353 Bacteria 5072
83 Ga0075370_10017226 3300006353 Bacteria 3902
84 Ga0075370_10038231 3300006353 Bacteria 2700
85 Ga0075428_100474693 3300006844 Bacteria 1339
86 Ga0068865_100027285 3300006881 Bacteria 3770
87 Ga0097620_100271824 3300006931 Bacteria 1787
88 Ga0111539_10935266 3300009094 Unclassified 1008
89 Ga0105245_10024827 3300009098 Bacteria 5266
90 Ga0105245_10235867 3300009098 Bacteria 1771
91 Ga0105245_10237893 3300009098 Bacteria 1764
92 Ga0114129_10338101 3300009147 Bacteria 1998
93 Ga0105243_10022343 3300009148 Bacteria 4807
94 Ga0105243_10417505 3300009148 Bacteria 1250
95 Ga0105242_10016589 3300009176 Bacteria 5728
96 Ga0105242_10310310 3300009176 Bacteria 1443
97 Ga0105248_10019587 3300009177 Bacteria 7490
98 Ga0105249_10013797 3300009553 Bacteria 7139
99 Ga0105239_10196275 3300010375 Bacteria 2260
100 Ga0105246_10345098 3300011119 Bacteria 1218
101 Ga0105246_10567276 3300011119 Bacteria 975
102 Ga0157371_10360326 3300013102 Bacteria 1060
103 Ga0157372_10366893 3300013307 Bacteria 1678
104 Ga0157372_10861202 3300013307 Bacteria 1052
105 Ga0157375_10290323 3300013308 Bacteria 1799
106 Ga0157375_10711947 3300013308 Bacteria 1157
107 Ga0163163_10042494 3300014325 Bacteria 4452
108 Ga0163163_10144587 3300014325 Bacteria 2421
109 Ga0163163_10840394 3300014325 Bacteria 982
110 Ga0157380_10044012 3300014326 Bacteria 3496
111 Ga0163161_10065463 3300017792 Bacteria 2652
112 Ga0163161_10232887 3300017792 Bacteria 1430
113 Ga0163161_10273479 3300017792 Bacteria 1323
114 Ga0206354_10393329 3300020081 Bacteria 971
115 Ga0206353_10251077 3300020082 Bacteria 6850
116 Ga0207688_10018321 3300025901 Bacteria 3810
117 Ga0207647_10051299 3300025904 Bacteria 2550
118 Ga0207643_10003716 3300025908 Bacteria 8205
119 Ga0207705_10025691 3300025909 Bacteria 4202
120 Ga0207662_10246912 3300025918 Bacteria 1170
121 Ga0207657_10255979 3300025919 Bacteria 1394
122 Ga0207649_10083404 3300025920 Bacteria 2075
123 Ga0207650_10383161 3300025925 Bacteria 1161
124 Ga0207687_10221001 3300025927 Bacteria 1492
125 Ga0207706_10266711 3300025933 Bacteria 1494
126 Ga0207686_10044356 3300025934 Bacteria 2730
127 Ga0207709_10011154 3300025935 Bacteria 4956
128 Ga0207709_10243979 3300025935 Bacteria 1308
129 Ga0207670_10664598 3300025936 Bacteria 860
130 Ga0207669_10604304 3300025937 Bacteria 892
131 Ga0207669_10789696 3300025937 Bacteria 787
132 Ga0207704_10335705 3300025938 Bacteria 1171
133 Ga0207691_10012245 3300025940 Bacteria 8222
134 Ga0207691_10088919 3300025940 Bacteria 2770
135 Ga0207711_10617920 3300025941 Bacteria 1011
136 Ga0207689_10168833 3300025942 Bacteria 1803
137 Ga0207679_10013114 3300025945 Bacteria 5427
138 Ga0207667_10104834 3300025949 Bacteria 2917
139 Ga0207712_10055606 3300025961 Bacteria 2785
140 Ga0207640_10129192 3300025981 Bacteria 1824
141 Ga0207658_10028489 3300025986 Bacteria 3933
142 Ga0207677_10056937 3300026023 Bacteria 2681
143 Ga0207678_10054797 3300026067 Bacteria 3435
144 Ga0207678_10115823 3300026067 Bacteria 2287
145 Ga0207678_10346794 3300026067 Bacteria 1280
146 Ga0207708_10000410 3300026075 Bacteria 33781
147 Ga0207648_10004187 3300026089 Bacteria 14909
148 Ga0207675_100017830 3300026118 Bacteria 6624
149 Ga0207683_10477924 3300026121 Bacteria 1150
150 Ga0207698_10396814 3300026142 Bacteria 1317
151 Ga0209813_10014497 3300027866 Bacteria 2123
152 Ga0207428_10373622 3300027907 Bacteria 1047
153 Ga0268264_10000462 3300028381 Bacteria 55077
154 Ga0307509_10040834 3300031507 Bacteria 5042
155 Ga0307408_100140420 3300031548 Bacteria 1896
156 Ga0307405_10118066 3300031731 Bacteria 1810
157 Ga0307405_10484699 3300031731 Bacteria 988
158 Ga0307405_10682947 3300031731 Bacteria 848
159 Ga0307410_10220754 3300031852 Bacteria 1458
160 Ga0307410_10221472 3300031852 Bacteria 1456
161 Ga0307410_10757638 3300031852 Bacteria 823
162 Ga0307407_10150699 3300031903 Bacteria 1511
163 Ga0307412_10650607 3300031911 Bacteria 899
164 Ga0307409_100003810 3300031995 Bacteria 8316
165 Ga0307409_100068749 3300031995 Bacteria 2803
166 Ga0307416_100095621 3300032002 Bacteria 2566
167 Ga0307416_100498597 3300032002 Bacteria 1281
168 Ga0307411_10038907 3300032005 Bacteria 3005
169 Ga0307415_100000133 3300032126 Bacteria 32344
170 Ga0307415_100242057 3300032126 Bacteria 1460
171 Ga0307415_100325789 3300032126 Bacteria 1283
172 Ga0307415_100482393 3300032126 Bacteria 1080
173 Ga0395900_0259597 3300037418 Bacteria 1736
174 Ga0395900_0276691 3300037418 Bacteria 1672
175 Ga0395898_0203965 3300037466 Bacteria 1887
176 Ga0395898_0275265 3300037466 Bacteria 1605
177 Ga0395905_0885074 3300037471 Bacteria 796
178 Ga0436364_1242203 3300037853 Bacteria 7988
179 Ga0395901_0306652 3300038443 Bacteria 1645
180 Ga0451841_0662539 3300041498 Bacteria 584
181 Ga0451843_1334826 3300041509 Bacteria 1278
182 Ga0439442_051776 3300042002 Bacteria 866
183 Ga0439457_056016 3300042014 Bacteria 889
184 Ga0450907_012738 3300042146 Bacteria 1400
185 Ga0439446_0082175 3300042156 Bacteria 999
186 Ga0466972_0018900 3300044658 Bacteria 3444
187 Ga0466965_0006434 3300044683 Bacteria 5334
188 Ga0466965_0021190 3300044683 Bacteria 3128
189 Ga0466966_0178479 3300044684 Bacteria 1289
190 Ga0466966_0372286 3300044684 Bacteria 858
191 Ga0466961_0033230 3300044693 Bacteria 3315
192 Ga0466961_0162328 3300044693 Bacteria 1392
193 Ga0466963_0022119 3300044694 Bacteria 4023
194 Ga0466963_0101931 3300044694 Bacteria 1965
195 Ga0466963_0345842 3300044694 Bacteria 1047
196 Ga0466964_0071361 3300044706 Bacteria 1469
197 Ga0466968_0033336 3300044735 Bacteria 2146
198 Ga0466968_0061217 3300044735 Bacteria 1624
199 Ga0466970_0025797 3300044765 Bacteria 3079
200 Ga0466970_0109142 3300044765 Bacteria 1511
201 Ga0466957_0025942 3300044842 Bacteria 3474
202 Ga0466957_0045542 3300044842 Bacteria 2660
203 Ga0466957_0055241 3300044842 Bacteria 2427
204 Ga0466957_0107280 3300044842 Bacteria 1768
205 Ga0466960_0048185 3300044901 Bacteria 2047
206 Ga0466960_0050147 3300044901 Bacteria 2012
207 Ga0466960_0118294 3300044901 Bacteria 1385
208 Ga0466960_0139039 3300044901 Bacteria 1289
209 Ga0466960_0166701 3300044901 Bacteria 1186
210 Ga0466960_0322032 3300044901 Bacteria 876
211 Ga0466967_0001897 3300045976 Bacteria 12632
212 Ga0466967_0163652 3300045976 Bacteria 2090
213 Ga0466967_0185399 3300045976 Bacteria 1965
214 Ga0466967_0256901 3300045976 Bacteria 1671
215 Ga0466967_0350038 3300045976 Bacteria 1430
216 Ga0466967_0510468 3300045976 Bacteria 1180
217 Ga0466967_0654528 3300045976 Bacteria 1039
218 Ga0495640_0321264 3300046533 Bacteria 959
219 Ga0496102_1253379 3300048905 Bacteria 661
220 Ga0496109_0140064 3300048912 Bacteria 2262
221 Ga0496109_0165922 3300048912 Bacteria 2070
222 Ga0496109_0226400 3300048912 Bacteria 1759
223 Ga0496109_0586334 3300048912 Bacteria 1051
224 Ga0496109_0720711 3300048912 Bacteria 935
225 Ga0496110_0042571 3300048913 Bacteria 3964
226 Ga0496110_0060974 3300048913 Bacteria 3328
227 Ga0496110_0096005 3300048913 Bacteria 2656
228 Ga0496114_0016525 3300048917 Bacteria 5948
229 Ga0496114_0131549 3300048917 Bacteria 2161
230 Ga0496114_0187706 3300048917 Bacteria 1807
231 Ga0496114_0236245 3300048917 Bacteria 1606
232 Ga0496124_0147651 3300048927 Bacteria 1849
233 Ga0501031_0520539 3300049568 Bacteria 767
234 Ga0501034_0176617 3300049571 Bacteria 2102
235 Ga0501034_0402524 3300049571 Bacteria 1291
236 Ga0501034_0503449 3300049571 Bacteria 1125
237 Ga0501036_0045615 3300049572 Bacteria 3713
238 Ga0501038_0000471 3300049574 Bacteria 35396
239 Ga0501038_0045485 3300049574 Bacteria 3811
240 Ga0501038_0068698 3300049574 Bacteria 3012
241 Ga0501039_0090068 3300049575 Bacteria 2391
242 Ga0501040_0043546 3300049576 Bacteria 3060
243 Ga0501040_0066363 3300049576 Bacteria 2487
244 Ga0501040_0146810 3300049576 Bacteria 1663
245 Ga0501040_0189989 3300049576 Bacteria 1457
246 Ga0501042_0081094 3300049578 Bacteria 2325
247 Ga0501042_0103054 3300049578 Bacteria 2053
248 Ga0501047_0004082 3300049581 Bacteria 13735
249 Ga0501048_0303074 3300049582 Bacteria 1137
250 Ga0501067_0018124 3300049583 Bacteria 3899
251 Ga0501067_0032714 3300049583 Bacteria 2886
252 Ga0501067_0056000 3300049583 Bacteria 2185
253 Ga0501069_0032732 3300049585 Bacteria 2862
254 Ga0501069_0087613 3300049585 Bacteria 1759
255 Ga0501069_0090852 3300049585 Bacteria 1727
256 Ga0501070_0204738 3300049586 Bacteria 1620
257 Ga0501071_0023491 3300049587 Bacteria 4307
258 Ga0501072_0086625 3300049588 Bacteria 2486
259 Ga0501073_0033277 3300049589 Bacteria 3671
260 Ga0501074_0025565 3300049590 Bacteria 4286
261 Ga0501074_0076194 3300049590 Bacteria 2408
262 Ga0501074_0204964 3300049590 Bacteria 1405
263 Ga0501075_0096452 3300049591 Bacteria 2244
264 Ga0501075_0152586 3300049591 Bacteria 1761
265 Ga0501076_0185107 3300049592 Bacteria 1698
266 Ga0501079_0681425 3300049741 Bacteria 809
267 Ga0501080_0549461 3300049742 Bacteria 1029
268 Ga0501081_0140303 3300049743 Bacteria 1732
269 Ga0501044_0053689 3300049823 Bacteria 4145
270 Ga0501044_0148601 3300049823 Bacteria 2327
271 Ga0501045_0107551 3300049824 Bacteria 2067
272 Ga0501045_0203701 3300049824 Bacteria 1474
273 nmdc:mga03683_12976_c1 3300050489 Bacteria 3056
274 nmdc:mga03n38_1401_c1 3300050490 Bacteria 6865
275 nmdc:mga03n38_84894_c1 3300050490 Bacteria 1496
276 nmdc:mga00v17_139772_c1 3300050491 Bacteria 1552
277 nmdc:mga00v17_18046_c1 3300050491 Bacteria 4005
278 nmdc:mga00v17_25170_c1 3300050491 Bacteria 2933
279 nmdc:mga00v17_274375_c1 3300050491 Bacteria 1094
280 nmdc:mga00v17_45658_c1 3300050491 Bacteria 2648
281 nmdc:mga00v17_530181_c1 3300050491 Bacteria 762
282 nmdc:mga00v17_7461_c1 3300050491 Bacteria 5837
283 nmdc:mga0yw44_116991_c1 3300050492 Bacteria 1714
284 nmdc:mga0yw44_117424_c1 3300050492 Bacteria 1711
285 nmdc:mga0yw44_17041_c1 3300050492 Bacteria 3943
286 nmdc:mga0yw44_27576_c1 3300050492 Bacteria 3255
287 nmdc:mga0yw44_4256_c1 3300050492 Bacteria 6524
288 nmdc:mga0yw44_51694_c1 3300050492 Bacteria 2489
289 nmdc:mga0yw44_521457_c1 3300050492 Bacteria 806
290 nmdc:mga0yw44_523312_c1 3300050492 Bacteria 805
291 nmdc:mga0yw44_616_c2 3300050492 Bacteria 7542
292 nmdc:mga0yw44_71652_c1 3300050492 Bacteria 2152
293 nmdc:mga0yw44_8020_c1 3300050492 Bacteria 5236
294 nmdc:mga0yw44_85143_c1 3300050492 Bacteria 1989
295 nmdc:mga0yw44_97856_c1 3300050492 Bacteria 1864
296 nmdc:mga06z11_216555_c1 3300050494 Bacteria 1118
297 nmdc:mga06z11_59230_c1 3300050494 Bacteria 1990
298 nmdc:mga06z11_76144_c1 3300050494 Bacteria 1789
299 nmdc:mga06z11_95825_c1 3300050494 Bacteria 1620
300 nmdc:mga04h51_39165_c1 3300050495 Bacteria 1539
301 nmdc:mga07m45_17063_c1 3300050496 Bacteria 1979
302 nmdc:mga07m45_23318_c1 3300050496 Bacteria 3383
303 nmdc:mga07m45_239207_c1 3300050496 Bacteria 1056
304 nmdc:mga07m45_9593_c1 3300050496 Bacteria 5029
305 nmdc:mga08y16_199582_c1 3300050511 Bacteria 2073
306 nmdc:mga08y16_705212_c1 3300050511 Bacteria 1009
307 Ga0495619_0023435 3300053085 Bacteria 3958
308 Ga0500644_0000054 3300053088 Bacteria 69110
309 Ga0500641_0098200 3300053096 Bacteria 1255
310 Ga0500554_012007 3300053102 Bacteria 2166
311 Ga0500556_0001260 3300053104 Bacteria 11653
312 Ga0500593_006846 3300053117 Bacteria 4591
313 Ga0500568_0098528 3300053139 Bacteria 1098
314 Ga0500573_0005797 3300053140 Bacteria 6630
315 Ga0500573_0086346 3300053140 Bacteria 1778
316 Ga0501084_0266040 3300054114 Bacteria 1448
317 Ga0501082_0636147 3300060353 Bacteria 933
318 Ga0501082_0658150 3300060353 Bacteria 917
319 Ga0466962_0027938 3300061719 Bacteria 2704
320 2644093439 2643221615 Bacteria 5487866
321 2644231007 2643221641 Bacteria 4490190
322 2644323049 2643221657 Bacteria 5490246
323 2855389411 2855386786 Bacteria 4752232
324 2857483978 2857481737 Bacteria 4761446
325 2984579738 2984576629 Bacteria 4248407
326 2990257344 2990256926 Bacteria 4252839
327 Ga0501067_0017630
328 LJQas_1004782
329 JGI24743J22301_10011462
330 JGI24749J21850_1010824
331 JGI24744J21845_10003843
332 rootL2_10076891
333 Ga0070658_10022475
334 Ga0070676_10066108
335 Ga0070683_100034449
336 Ga0070683_100435074
337 Ga0070683_100503070
338 Ga0070682_100035356
339 Ga0068868_100046521
340 Ga0070660_100291159
341 Ga0070691_10046095
342 Ga0070687_100035286
343 Ga0070661_100605458
344 Ga0070692_10014732
345 Ga0070675_100050724
346 Ga0070674_100075514
347 Ga0070673_100291622
348 Ga0070659_100153161
349 Ga0070659_100474475
350 Ga0070667_100186830
351 Ga0070701_10007960
352 Ga0070700_100001812
353 Ga0070663_100240079
354 Ga0070663_100351897
355 Ga0070663_100388393
356 Ga0070662_100243951
357 Ga0068867_100043112
358 Ga0070684_100055499
359 Ga0070684_100062094
360 Ga0070672_100039004
361 Ga0070686_100212397
362 Ga0070693_100104692
363 Ga0070693_100243413
364 Ga0070704_100141166
365 Ga0068855_100209900
366 Ga0070664_100002081
367 Ga0070664_100746994
368 Ga0070664_100942538
369 Ga0068854_100016008
370 Ga0070702_100002602
371 Ga0068852_100001874
372 Ga0068859_100271821
373 Ga0068861_100023645
374 Ga0068870_10057982
375 Ga0068860_100000408
376 Ga0081539_10018594
377 Ga0075365_10007281
378 Ga0075365_10021459
379 Ga0075365_10026642
380 Ga0075365_10038180
381 Ga0075365_10044026
382 Ga0075365_10054625
383 Ga0075365_10067294
384 Ga0075365_10095370
385 Ga0075365_10100443
386 Ga0075365_10193046
387 Ga0075365_10298487
388 Ga0075365_10324909
389 Ga0075368_10001774
390 Ga0075368_10009655
391 Ga0075368_10119157
392 Ga0075363_100003695
393 Ga0075363_100014121
394 Ga0075363_100025000
395 Ga0075363_100035351
396 Ga0075364_10016451
397 Ga0075364_10037319
398 Ga0075364_10049300
399 Ga0075364_10069260
400 Ga0075364_10084249
401 Ga0075364_10135522
402 Ga0075432_10104533
403 Ga0075362_10018517
404 Ga0075362_10046326
405 Ga0075367_10042994
406 Ga0075367_10057786
407 Ga0075367_10506843
408 Ga0075370_10009409
409 Ga0075370_10017226
410 Ga0075370_10038231
411 Ga0075428_100474693
412 Ga0068865_100027285
413 Ga0097620_100271824
414 Ga0111539_10935266
415 Ga0105245_10024827
416 Ga0105245_10235867
417 Ga0105245_10237893
418 Ga0114129_10338101
419 Ga0105243_10022343
420 Ga0105243_10417505
421 Ga0105242_10016589
422 Ga0105242_10310310
423 Ga0105248_10019587
424 Ga0105249_10013797
425 Ga0105239_10196275
426 Ga0105246_10345098
427 Ga0105246_10567276
428 Ga0157371_10360326
429 Ga0157372_10366893
430 Ga0157372_10861202
431 Ga0157375_10290323
432 Ga0157375_10711947
433 Ga0163163_10042494
434 Ga0163163_10144587
435 Ga0163163_10840394
436 Ga0157380_10044012
437 Ga0163161_10065463
438 Ga0163161_10232887
439 Ga0163161_10273479
440 Ga0206354_10393329
441 Ga0206353_10251077
442 Ga0207688_10018321
443 Ga0207647_10051299
444 Ga0207643_10003716
445 Ga0207705_10025691
446 Ga0207662_10246912
447 Ga0207657_10255979
448 Ga0207649_10083404
449 Ga0207650_10383161
450 Ga0207687_10221001
451 Ga0207706_10266711
452 Ga0207686_10044356
453 Ga0207709_10011154
454 Ga0207709_10243979
455 Ga0207670_10664598
456 Ga0207669_10604304
457 Ga0207669_10789696
458 Ga0207704_10335705
459 Ga0207691_10012245
460 Ga0207691_10088919
461 Ga0207711_10617920
462 Ga0207689_10168833
463 Ga0207679_10013114
464 Ga0207667_10104834
465 Ga0207712_10055606
466 Ga0207640_10129192
467 Ga0207658_10028489
468 Ga0207677_10056937
469 Ga0207678_10054797
470 Ga0207678_10115823
471 Ga0207678_10346794
472 Ga0207708_10000410
473 Ga0207648_10004187
474 Ga0207675_100017830
475 Ga0207683_10477924
476 Ga0207698_10396814
477 Ga0209813_10014497
478 Ga0207428_10373622
479 Ga0268264_10000462
480 Ga0307509_10040834
481 Ga0307408_100140420
482 Ga0307405_10118066
483 Ga0307405_10484699
484 Ga0307405_10682947
485 Ga0307410_10220754
486 Ga0307410_10221472
487 Ga0307410_10757638
488 Ga0307407_10150699
489 Ga0307412_10650607
490 Ga0307409_100003810
491 Ga0307409_100068749
492 Ga0307416_100095621
493 Ga0307416_100498597
494 Ga0307411_10038907
495 Ga0307415_100000133
496 Ga0307415_100242057
497 Ga0307415_100325789
498 Ga0307415_100482393
499 Ga0395900_0259597
500 Ga0395900_0276691
501 Ga0395898_0203965
502 Ga0395898_0275265
503 Ga0395905_0885074
504 Ga0436364_1242203
505 Ga0395901_0306652
506 Ga0451841_0662539
507 Ga0451843_1334826
508 Ga0439442_051776
509 Ga0439457_056016
510 Ga0450907_012738
511 Ga0439446_0082175
512 Ga0466972_0018900
513 Ga0466965_0006434
514 Ga0466965_0021190
515 Ga0466966_0178479
516 Ga0466966_0372286
517 Ga0466961_0033230
518 Ga0466961_0162328
519 Ga0466963_0022119
520 Ga0466963_0101931
521 Ga0466963_0345842
522 Ga0466964_0071361
523 Ga0466968_0033336
524 Ga0466968_0061217
525 Ga0466970_0025797
526 Ga0466970_0109142
527 Ga0466957_0025942
528 Ga0466957_0045542
529 Ga0466957_0055241
530 Ga0466957_0107280
531 Ga0466960_0048185
532 Ga0466960_0050147
533 Ga0466960_0118294
534 Ga0466960_0139039
535 Ga0466960_0166701
536 Ga0466960_0322032
537 Ga0466967_0001897
538 Ga0466967_0163652
539 Ga0466967_0185399
540 Ga0466967_0256901
541 Ga0466967_0350038
542 Ga0466967_0510468
543 Ga0466967_0654528
544 Ga0495640_0321264
545 Ga0496102_1253379
546 Ga0496109_0140064
547 Ga0496109_0165922
548 Ga0496109_0226400
549 Ga0496109_0586334
550 Ga0496109_0720711
551 Ga0496110_0042571
552 Ga0496110_0060974
553 Ga0496110_0096005
554 Ga0496114_0016525
555 Ga0496114_0131549
556 Ga0496114_0187706
557 Ga0496114_0236245
558 Ga0496124_0147651
559 Ga0501031_0520539
560 Ga0501034_0176617
561 Ga0501034_0402524
562 Ga0501034_0503449
563 Ga0501036_0045615
564 Ga0501038_0000471
565 Ga0501038_0045485
566 Ga0501038_0068698
567 Ga0501039_0090068
568 Ga0501040_0043546
569 Ga0501040_0066363
570 Ga0501040_0146810
571 Ga0501040_0189989
572 Ga0501042_0081094
573 Ga0501042_0103054
574 Ga0501047_0004082
575 Ga0501048_0303074
576 Ga0501067_0018124
577 Ga0501067_0032714
578 Ga0501067_0056000
579 Ga0501069_0032732
580 Ga0501069_0087613
581 Ga0501069_0090852
582 Ga0501070_0204738
583 Ga0501071_0023491
584 Ga0501072_0086625
585 Ga0501073_0033277
586 Ga0501074_0025565
587 Ga0501074_0076194
588 Ga0501074_0204964
589 Ga0501075_0096452
590 Ga0501075_0152586
591 Ga0501076_0185107
592 Ga0501079_0681425
593 Ga0501080_0549461
594 Ga0501081_0140303
595 Ga0501044_0053689
596 Ga0501044_0148601
597 Ga0501045_0107551
598 Ga0501045_0203701
599 nmdc:mga03683_12976_c1
600 nmdc:mga03n38_1401_c1
601 nmdc:mga03n38_84894_c1
602 nmdc:mga00v17_139772_c1
603 nmdc:mga00v17_18046_c1
604 nmdc:mga00v17_25170_c1
605 nmdc:mga00v17_274375_c1
606 nmdc:mga00v17_45658_c1
607 nmdc:mga00v17_530181_c1
608 nmdc:mga00v17_7461_c1
609 nmdc:mga0yw44_116991_c1
610 nmdc:mga0yw44_117424_c1
611 nmdc:mga0yw44_17041_c1
612 nmdc:mga0yw44_27576_c1
613 nmdc:mga0yw44_4256_c1
614 nmdc:mga0yw44_51694_c1
615 nmdc:mga0yw44_521457_c1
616 nmdc:mga0yw44_523312_c1
617 nmdc:mga0yw44_616_c2
618 nmdc:mga0yw44_71652_c1
619 nmdc:mga0yw44_8020_c1
620 nmdc:mga0yw44_85143_c1
621 nmdc:mga0yw44_97856_c1
622 nmdc:mga06z11_216555_c1
623 nmdc:mga06z11_59230_c1
624 nmdc:mga06z11_76144_c1
625 nmdc:mga06z11_95825_c1
626 nmdc:mga04h51_39165_c1
627 nmdc:mga07m45_17063_c1
628 nmdc:mga07m45_23318_c1
629 nmdc:mga07m45_239207_c1
630 nmdc:mga07m45_9593_c1
631 nmdc:mga08y16_199582_c1
632 nmdc:mga08y16_705212_c1
633 Ga0495619_0023435
634 Ga0500644_0000054
635 Ga0500641_0098200
636 Ga0500554_012007
637 Ga0500556_0001260
638 Ga0500593_006846
639 Ga0500568_0098528
640 Ga0500573_0005797
641 Ga0500573_0086346
642 Ga0501084_0266040
643 Ga0501082_0636147
644 Ga0501082_0658150
645 Ga0466962_0027938
646 2644093439
647 2644231007
648 2644323049
649 2855389411
650 2857483978
651 2984579738
652 2990257344

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01564

Spermine_synth

Spermine/spermidine synthase domain

70

226

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
6o64-assembly1.cif.gz_B crystal structure of arabidopsis thaliana spermidine synthase isoform 2 (atspds2) 0.858 4 226
6o64-assembly1.cif.gz_A crystal structure of arabidopsis thaliana spermidine synthase isoform 2 (atspds2) 0.8564 5 226
4yv0-assembly2.cif.gz_D crystal structure of trypanosoma cruzi spermidine synthase in complex with (2s)-n-methyl-n-phenyl-2,3-dihydro-1,4-benzodioxine- 2-carboxamid 0.8478 5 221
6o64-assembly2.cif.gz_D crystal structure of arabidopsis thaliana spermidine synthase isoform 2 (atspds2) 0.8474 5 226
4yuz-assembly2.cif.gz_D crystal structure of trypanosoma cruzi spermidine synthase in complex with 5-[(4-methylbenzyl)oxy]quinazoline-2,4-diamine 0.8451 5 225
ID Description Score Start End Superfamily
af_I1JZX5_64_282_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8593 46 226 3.40.50.150
af_P19623_75_302_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.839 46 221 3.40.50.150
1jq3D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8326 45 221 3.40.50.150
af_B4E3X6_90_272_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8273 45 221 3.40.50.150
1inlB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.826 46 221 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A6L7EXE1-F1-model_v4 Spermidine synthase 0.9972 2 223 GO:0006596
AF-A0A4P7GNH8-F1-model_v4 Spermidine synthase 0.9942 2 223 GO:0006596
AF-A0A0Q7BF64-F1-model_v4 PABS domain-containing protein 0.9853 1 227 GO:0006596
AF-A0A4V1RPJ4-F1-model_v4 PABS domain-containing protein 0.9744 2 222 GO:0006596
AF-A0A6L7EXE1-F1-model_v4 Spermidine synthase 0.971 2 223 GO:0006596

Map