F406089

General Info

Members Datasets Scaffolds Average Seq Length
321 210 642 204

Family's Representative Sequence

Representative Sequence 3300042532|Ga0450893_0022212|Ga0450893_0022212_248_973
Length 241
Sequence MDTLGFMARVSFREQVLRAREDAIVSSVNRLLAQRGYEGMTVDAVAADVGIAKAVLYKHFSSKEALAAAAMVGVLERAEARLDELAAEPLGALERLKAVARWTMEVQLAGEMPALPAQNSSLRAALMADQGYVGKLMQVSDRLGEWITEAQAAGGIDPALPPELVLYTLYARACDPVLSVLKAGGGYSDERIIELLLATCFGGLQARGPAAAAGEKPAVSRKTRARSPGSPSPATKAGSGR

Samples

Sample ID Description Type Environment
1 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
4 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
5 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
6 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
7 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
8 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
9 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
10 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
11 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
12 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
13 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
14 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
17 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
18 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
19 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
28 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
29 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
30 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
31 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
32 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
33 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
41 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
45 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
46 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
47 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
48 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
49 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
50 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
51 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
53 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
54 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
57 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
59 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
62 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
73 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
75 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
76 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
77 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
78 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
79 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
80 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
81 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
82 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
83 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
84 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
85 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
86 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
87 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
88 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
89 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
90 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
91 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
92 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
93 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
94 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
95 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
96 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
97 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
98 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
99 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
100 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
101 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
102 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
103 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
104 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
105 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
106 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
107 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
108 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
109 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
110 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
111 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
112 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
113 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
114 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
115 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
116 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
117 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
118 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
119 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
120 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
121 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
122 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
123 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
124 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
125 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
126 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
127 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
128 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
129 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
130 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
131 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
132 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
133 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
134 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
135 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
136 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
137 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
138 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
139 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
140 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
141 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
142 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
143 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
144 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
145 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
146 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
147 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
148 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
149 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
150 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
151 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
152 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
153 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
154 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
155 3300049682 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_B_3_drought Metagenome Rhizosphere
156 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
157 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
158 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
159 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
160 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
161 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
162 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
163 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
164 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
165 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
166 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
167 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
168 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
169 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
170 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
171 3300053110 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 endosphere Metagenome Endosphere
172 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
173 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
174 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
175 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
176 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
177 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
178 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
179 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
180 3300053141 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 endosphere Metagenome Endosphere
181 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
182 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
183 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
184 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
185 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
186 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
187 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
188 3300053734 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 endosphere Metagenome Endosphere
189 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
190 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
191 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
192 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
193 2511231002 Polaromonas sp. CF318 Isolate Rhizosphere
194 2599185214 Variovorax sp. NFACC26 Isolate Rhizoplane
195 2599185226 Variovorax sp. NFACC27 Isolate Rhizoplane
196 2599185227 Variovorax sp. NFACC28 Isolate Rhizoplane
197 2599185229 Variovorax sp. NFACC29 Isolate Endosphere
198 2643221660 Methylibium sp. Root1272 Isolate Unclassified
199 2738541277 Variovorax sp. GV051 Isolate Unclassified
200 2738541307 Variovorax sp. GV008 Isolate Unclassified
201 2738543019 Variovorax sp. GV040 Isolate Unclassified
202 2885198086 Variovorax sp. 679 Isolate Unclassified
203 2885211737 Variovorax sp. 553 Isolate Unclassified
204 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
205 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified
206 2928070936 Variovorax gossypii 1167 Isolate Unclassified
207 2928084124 Variovorax paradoxus 1218 Isolate Unclassified
208 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
209 2945909444 Variovorax sp. CRF3-Va-1 W1I1 Isolate Rhizosphere
210 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.39
Metatranscriptomes 0
Isolates 5.61

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 29.6
Nodule 0.62
Rhizoplane 6.23
Rhizosphere 41.12
Stem 0
Stem Tuber 0
Unclassified 0.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0450893_0022212 3300042532 Bacteria 1099
2 JGI24740J21852_10022390 3300001979 Bacteria 2176
3 JGI25155J39150_1000073 3300002704 Bacteria 62972
4 JGI25156J39149_1000609 3300002705 Bacteria 19855
5 JGI25154J39366_1000118 3300002738 Bacteria 64203
6 JGI25154J39366_1000258 3300002738 Bacteria 33918
7 JGI25157J39369_1000001 3300002741 Bacteria 363277
8 JGI25151J46595_10001868 3300003187 Bacteria 13459
9 JGI25151J46595_10004616 3300003187 Bacteria 7249
10 JGI25151J46595_10119263 3300003187 Bacteria 675
11 Ga0055526_1007314 3300003771 Bacteria 5770
12 Ga0055524_1000046 3300003775 Bacteria 150909
13 Ga0055536_1012004 3300003781 Bacteria 3258
14 Ga0055530_10003387 3300003791 Bacteria 9105
15 Ga0055530_10033616 3300003791 Bacteria 1320
16 Ga0055540_1000007 3300003792 Bacteria 318178
17 Ga0055531_10007935 3300003794 Bacteria 5693
18 Ga0065165_1042205 3300005262 Bacteria 1348
19 Ga0070671_100007656 3300005355 Bacteria 8635
20 Ga0070674_100076003 3300005356 Bacteria 2387
21 Ga0070673_100215943 3300005364 Bacteria 1658
22 Ga0070667_100178239 3300005367 Bacteria 1879
23 Ga0070663_101079060 3300005455 Bacteria 701
24 Ga0070678_100131176 3300005456 Bacteria 1991
25 Ga0068853_100016638 3300005539 Bacteria 6055
26 Ga0070665_100010388 3300005548 Bacteria 9421
27 Ga0070665_100023002 3300005548 Bacteria 6275
28 Ga0068855_100018189 3300005563 Bacteria 8443
29 Ga0068855_100032425 3300005563 Bacteria 6238
30 Ga0068854_100418338 3300005578 Bacteria 1113
31 Ga0068852_100163370 3300005616 Bacteria 2081
32 Ga0068864_100024461 3300005618 Bacteria 5082
33 Ga0075363_100008569 3300006048 Bacteria 4769
34 Ga0075363_100024397 3300006048 Bacteria 3074
35 Ga0075364_10281264 3300006051 Bacteria 1132
36 Ga0075367_10254787 3300006178 Bacteria 1101
37 Ga0075366_10001765 3300006195 Bacteria 10903
38 Ga0075366_10005718 3300006195 Bacteria 6750
39 Ga0075366_10020343 3300006195 Bacteria 3850
40 Ga0075370_10017276 3300006353 Bacteria 3897
41 Ga0075370_10198384 3300006353 Bacteria 1183
42 Ga0075370_10335891 3300006353 Bacteria 901
43 Ga0068871_100301726 3300006358 Bacteria 1406
44 Ga0079104_1000009 3300006946 Bacteria 367015
45 Ga0105240_10233711 3300009093 Bacteria 2135
46 Ga0105240_10547778 3300009093 Bacteria 1280
47 Ga0105245_10726113 3300009098 Bacteria 1028
48 Ga0105247_10067567 3300009101 Bacteria 2227
49 Ga0105248_10007868 3300009177 Bacteria 11707
50 Ga0105248_10121748 3300009177 Bacteria 2943
51 Ga0105237_10026697 3300009545 Bacteria 5902
52 Ga0105237_10046180 3300009545 Bacteria 4382
53 Ga0105239_10138124 3300010375 Bacteria 2714
54 Ga0105239_10577363 3300010375 Bacteria 1281
55 Ga0105246_10026469 3300011119 Bacteria 3790
56 Ga0157373_10023813 3300013100 Bacteria 4437
57 Ga0157370_10006744 3300013104 Bacteria 12592
58 Ga0157369_10011362 3300013105 Bacteria 10113
59 Ga0157378_10129101 3300013297 Bacteria 2338
60 Ga0157378_10743625 3300013297 Bacteria 1003
61 Ga0182008_10005775 3300014497 Bacteria 7003
62 Ga0157379_10001445 3300014968 Bacteria 19513
63 Ga0163161_10004831 3300017792 Bacteria 9387
64 Ga0163161_10066569 3300017792 Bacteria 2631
65 Ga0209435_100001 3300025206 Bacteria 1424171
66 Ga0209646_1000001 3300025246 Bacteria 3092932
67 Ga0209026_1000001 3300025250 Bacteria 1228671
68 Ga0209677_117464 3300025253 Bacteria 893
69 Ga0209759_1000001 3300025256 Bacteria 2799452
70 Ga0209129_1006240 3300025258 Bacteria 3932
71 Ga0209675_1011478 3300025291 Bacteria 2934
72 Ga0209675_1023804 3300025291 Bacteria 1577
73 Ga0209676_1001275 3300025292 Bacteria 26098
74 Ga0209025_1000294 3300025294 Bacteria 111598
75 Ga0209025_1005038 3300025294 Bacteria 11027
76 Ga0209025_1022436 3300025294 Bacteria 3347
77 Ga0209025_1023318 3300025294 Bacteria 3239
78 Ga0209564_1001181 3300025295 Bacteria 30229
79 Ga0209564_1001930 3300025295 Bacteria 18511
80 Ga0209758_1031713 3300025297 Bacteria 2162
81 Ga0209050_1000246 3300025298 Bacteria 116721
82 Ga0209050_1014309 3300025298 Bacteria 3430
83 Ga0209050_1019381 3300025298 Bacteria 2585
84 Ga0209050_1023914 3300025298 Bacteria 2132
85 Ga0209256_1000019 3300025299 Bacteria 558627
86 Ga0209256_1022539 3300025299 Bacteria 1904
87 Ga0207426_1018687 3300025302 Bacteria 2438
88 Ga0209051_1000004 3300025303 Bacteria 1155596
89 Ga0209257_1000038 3300025304 Bacteria 609032
90 Ga0209257_1000044 3300025304 Bacteria 486709
91 Ga0209257_1003358 3300025304 Bacteria 13842
92 Ga0207695_10217195 3300025913 Bacteria 1820
93 Ga0207644_10035986 3300025931 Bacteria 3473
94 Ga0207669_10428715 3300025937 Bacteria 1043
95 Ga0207711_10296279 3300025941 Bacteria 1491
96 Ga0207711_10370460 3300025941 Unclassified 1328
97 Ga0207667_10023111 3300025949 Bacteria 6849
98 Ga0207667_10144190 3300025949 Bacteria 2452
99 Ga0207658_10160686 3300025986 Bacteria 1841
100 Ga0207639_10130329 3300026041 Bacteria 2081
101 Ga0207639_10634862 3300026041 Bacteria 987
102 Ga0207639_10741978 3300026041 Bacteria 913
103 Ga0207683_10039187 3300026121 Bacteria 4133
104 Ga0209281_1000023 3300027111 Bacteria 519955
105 Ga0268266_10011238 3300028379 Bacteria 7792
106 Ga0268266_10035699 3300028379 Bacteria 4228
107 Ga0307517_10108693 3300028786 Bacteria 2127
108 Ga0307517_10335994 3300028786 Bacteria 828
109 Ga0307515_10000013 3300028794 Bacteria 568456
110 Ga0307515_10000037 3300028794 Bacteria 331970
111 Ga0307515_10000219 3300028794 Bacteria 141532
112 Ga0307515_10000374 3300028794 Bacteria 109304
113 Ga0307515_10003154 3300028794 Bacteria 34882
114 Ga0307515_10119346 3300028794 Bacteria 3001
115 Ga0307515_10127657 3300028794 Bacteria 2827
116 Ga0307515_10488298 3300028794 Bacteria 843
117 Ga0307512_10060832 3300030522 Bacteria 2915
118 Ga0307512_10094176 3300030522 Bacteria 2068
119 Ga0307512_10094373 3300030522 Bacteria 2065
120 Ga0265328_10004159 3300031239 Bacteria 6311
121 Ga0265327_10000174 3300031251 Bacteria 138922
122 Ga0307513_10004807 3300031456 Bacteria 17947
123 Ga0307513_10013504 3300031456 Bacteria 10022
124 Ga0307509_10003945 3300031507 Bacteria 21884
125 Ga0307509_10034063 3300031507 Bacteria 5599
126 Ga0307509_10393075 3300031507 Bacteria 1096
127 Ga0307508_10201095 3300031616 Bacteria 1593
128 Ga0307514_10001231 3300031649 Bacteria 33814
129 Ga0307514_10001315 3300031649 Bacteria 31822
130 Ga0307514_10011100 3300031649 Bacteria 7503
131 Ga0307516_10000723 3300031730 Bacteria 45058
132 Ga0307516_10019586 3300031730 Bacteria 7006
133 Ga0307518_10185993 3300031838 Bacteria 1398
134 Ga0307410_11116804 3300031852 Bacteria 684
135 Ga0307412_10009695 3300031911 Bacteria 5529
136 Ga0307412_10070719 3300031911 Bacteria 2380
137 Ga0307416_100004118 3300032002 Bacteria 8707
138 Ga0307510_10000779 3300033180 Bacteria 32991
139 Ga0307510_10016176 3300033180 Bacteria 8810
140 Ga0307510_10019461 3300033180 Bacteria 7965
141 Ga0307510_10076221 3300033180 Bacteria 3300
142 Ga0373949_0057999 3300035090 Bacteria 990
143 Ga0373932_0039939 3300035112 Bacteria 1348
144 Ga0373943_0071880 3300035170 Bacteria 1754
145 Ga0373962_0097917 3300035242 Bacteria 912
146 Ga0373925_0172902 3300037068 Bacteria 1706
147 Ga0395905_0000308 3300037471 Bacteria 71152
148 Ga0395905_0140881 3300037471 Bacteria 2268
149 Ga0451791_0043916 3300041451 Bacteria 1252
150 Ga0451791_0961966 3300041451 Bacteria 947
151 Ga0451797_1479067 3300041453 Bacteria 1254
152 Ga0451804_0047533 3300041463 Bacteria 818
153 Ga0451807_1280374 3300041486 Bacteria 973
154 Ga0451841_1315363 3300041498 Bacteria 1058
155 Ga0451853_0522095 3300041512 Bacteria 2634
156 Ga0439431_0021897 3300041997 Bacteria 1537
157 Ga0450899_020674 3300042135 Unclassified 768
158 Ga0451577_0006736 3300042876 Bacteria 11399
159 Ga0451577_0009535 3300042876 Bacteria 9340
160 Ga0451577_0030724 3300042876 Bacteria 4851
161 Ga0451577_0044151 3300042876 Bacteria 3991
162 Ga0451577_0047210 3300042876 Bacteria 3851
163 Ga0466969_0055960 3300044656 Bacteria 1927
164 Ga0453683_0165029 3300044673 Bacteria 1402
165 Ga0453683_0499695 3300044673 Bacteria 789
166 Ga0466965_0012184 3300044683 Bacteria 4041
167 Ga0466961_0154736 3300044693 Bacteria 1430
168 Ga0466963_0211866 3300044694 Bacteria 1356
169 Ga0453684_0081577 3300044712 Bacteria 4033
170 Ga0453684_0121781 3300044712 Bacteria 3148
171 Ga0453684_0182616 3300044712 Bacteria 2461
172 Ga0453684_0206595 3300044712 Bacteria 2285
173 Ga0453684_0217184 3300044712 Bacteria 2218
174 Ga0466960_0082899 3300044901 Bacteria 1619
175 Ga0466959_0127028 3300045049 Bacteria 1809
176 Ga0451576_0008860 3300045051 Bacteria 11749
177 Ga0451576_0063098 3300045051 Bacteria 3862
178 Ga0451576_0283880 3300045051 Bacteria 1731
179 Ga0451576_0327895 3300045051 Bacteria 1602
180 Ga0451576_1361583 3300045051 Bacteria 739
181 Ga0466958_0039281 3300045836 Bacteria 2843
182 Ga0495627_004465 3300046453 Bacteria 5852
183 Ga0495627_012162 3300046453 Bacteria 3064
184 Ga0495592_0000477 3300046454 Bacteria 29375
185 Ga0495629_0641313 3300046459 Bacteria 708
186 Ga0495638_0128220 3300046460 Bacteria 1493
187 Ga0495606_0039406 3300046507 Bacteria 3185
188 Ga0495610_0043642 3300046512 Bacteria 2232
189 Ga0495616_0002296 3300046513 Bacteria 12792
190 Ga0495620_0007322 3300046515 Bacteria 6005
191 Ga0495620_0066255 3300046515 Bacteria 1488
192 Ga0495631_0000334 3300046518 Bacteria 32359
193 Ga0495632_0181549 3300046519 Bacteria 964
194 Ga0495637_0001832 3300046520 Bacteria 12166
195 Ga0495637_0072576 3300046520 Bacteria 1386
196 Ga0495643_0093537 3300046522 Bacteria 1548
197 Ga0495648_0104565 3300046524 Bacteria 1555
198 Ga0495654_0161478 3300046530 Bacteria 983
199 Ga0495622_0011744 3300046557 Bacteria 4050
200 Ga0495622_0047762 3300046557 Bacteria 1989
201 Ga0495656_0021724 3300046615 Bacteria 2502
202 Ga0495656_0066738 3300046615 Bacteria 1586
203 Ga0495625_0162501 3300046660 Bacteria 1495
204 Ga0495588_0025115 3300046674 Bacteria 2966
205 Ga0495658_0410657 3300046683 Bacteria 863
206 Ga0495624_0092878 3300046690 Bacteria 1861
207 Ga0495670_0048351 3300046691 Bacteria 2128
208 Ga0495670_0087580 3300046691 Bacteria 1591
209 Ga0495671_0008007 3300046692 Bacteria 5973
210 Ga0495671_0071879 3300046692 Bacteria 1699
211 Ga0495676_0024267 3300047321 Bacteria 5254
212 Ga0495676_0037161 3300047321 Bacteria 4057
213 Ga0495686_0301624 3300047472 Bacteria 884
214 Ga0495593_0056532 3300047673 Bacteria 2062
215 Ga0496102_0056223 3300048905 Bacteria 3589
216 Ga0496108_0224574 3300048911 Bacteria 1632
217 Ga0496109_0008367 3300048912 Bacteria 8791
218 Ga0496109_0083454 3300048912 Bacteria 2947
219 Ga0496109_1060259 3300048912 Bacteria 748
220 Ga0496110_0022639 3300048913 Bacteria 5338
221 Ga0496110_0042982 3300048913 Bacteria 3945
222 Ga0496112_0077583 3300048915 Bacteria 3285
223 Ga0496113_0349860 3300048916 Bacteria 1185
224 Ga0496114_0002065 3300048917 Bacteria 15294
225 Ga0496114_0155545 3300048917 Bacteria 1985
226 Ga0496114_0503720 3300048917 Bacteria 1071
227 Ga0496116_0239190 3300048919 Bacteria 913
228 Ga0496117_0195301 3300048920 Bacteria 1148
229 Ga0496117_0224622 3300048920 Bacteria 1042
230 Ga0496118_0019788 3300048921 Bacteria 6003
231 Ga0496118_0142672 3300048921 Bacteria 1515
232 Ga0496118_0368193 3300048921 Bacteria 759
233 Ga0496121_0032009 3300048924 Bacteria 4791
234 Ga0496121_0111597 3300048924 Bacteria 2084
235 Ga0496121_0173489 3300048924 Bacteria 1563
236 Ga0496122_0065856 3300048925 Bacteria 2623
237 Ga0496122_0080498 3300048925 Bacteria 2271
238 Ga0496122_0136576 3300048925 Bacteria 1544
239 Ga0496123_0013667 3300048926 Bacteria 6790
240 Ga0496123_0055552 3300048926 Bacteria 2596
241 Ga0496123_0075431 3300048926 Bacteria 2081
242 Ga0496124_0056130 3300048927 Bacteria 3323
243 Ga0496124_0170842 3300048927 Bacteria 1684
244 Ga0496124_0319856 3300048927 Bacteria 1111
245 Ga0496124_0526460 3300048927 Bacteria 786
246 Ga0496125_0040149 3300048928 Bacteria 4017
247 Ga0496125_0111554 3300048928 Bacteria 1978
248 Ga0496125_0195612 3300048928 Bacteria 1330
249 Ga0501222_009656 3300049662 Bacteria 1276
250 Ga0501252_003911 3300049682 Bacteria 1564
251 Ga0501259_070428 3300049688 Bacteria 749
252 nmdc:mga03683_188662_c1 3300050489 Bacteria 943
253 nmdc:mga00v17_405786_c1 3300050491 Bacteria 885
254 nmdc:mga0k408_160520_c2 3300050493 Bacteria 953
255 nmdc:mga0k408_2440_c1 3300050493 Bacteria 9879
256 nmdc:mga0k408_8024_c1 3300050493 Bacteria 5660
257 nmdc:mga06z11_100465_c1 3300050494 Bacteria 1586
258 nmdc:mga07m45_128263_c1 3300050496 Bacteria 1467
259 nmdc:mga07m45_235976_c1 3300050496 Bacteria 1064
260 nmdc:mga07m45_2920_c1 3300050496 Bacteria 8107
261 nmdc:mga07m45_424437_c1 3300050496 Bacteria 771
262 nmdc:mga07m45_85998_c1 3300050496 Bacteria 1116
263 nmdc:mga0sz30_86673_c1 3300050516 Bacteria 1359
264 Ga0500610_0013259 3300053079 Bacteria 3829
265 Ga0500610_0028999 3300053079 Bacteria 2792
266 Ga0500643_011157 3300053087 Bacteria 3296
267 Ga0500644_0023858 3300053088 Bacteria 1863
268 Ga0500651_0000064 3300053093 Bacteria 70497
269 Ga0500651_0012926 3300053093 Bacteria 5072
270 Ga0500651_0081592 3300053093 Bacteria 2002
271 Ga0500566_0057174 3300053094 Bacteria 2216
272 Ga0500566_0353160 3300053094 Bacteria 673
273 Ga0500641_0049368 3300053096 Bacteria 1726
274 Ga0500555_043064 3300053103 Bacteria 1252
275 Ga0500569_013294 3300053109 Bacteria 2012
276 Ga0500571_001190 3300053110 Bacteria 11864
277 Ga0500593_000439 3300053117 Bacteria 16369
278 Ga0500594_0001105 3300053118 Bacteria 5784
279 Ga0500594_0001586 3300053118 Bacteria 4953
280 Ga0500597_026326 3300053120 Bacteria 2353
281 Ga0500607_001602 3300053121 Bacteria 20006
282 Ga0500607_052488 3300053121 Bacteria 2164
283 Ga0500618_060325 3300053125 Bacteria 853
284 Ga0500559_0000020 3300053136 Bacteria 134858
285 Ga0500559_0004902 3300053136 Bacteria 6238
286 Ga0500564_000623 3300053138 Bacteria 10798
287 Ga0500564_020225 3300053138 Bacteria 3045
288 Ga0500568_0011564 3300053139 Bacteria 4085
289 Ga0500568_0023395 3300053139 Bacteria 2628
290 Ga0500574_035208 3300053141 Bacteria 1370
291 Ga0500604_0044627 3300053151 Bacteria 1351
292 Ga0500619_000146 3300053154 Bacteria 17284
293 Ga0500622_0103299 3300053156 Bacteria 1400
294 Ga0500634_0009517 3300053161 Bacteria 4922
295 Ga0500634_0045870 3300053161 Bacteria 2363
296 Ga0500636_0219825 3300053177 Bacteria 991
297 Ga0500570_078943 3300053724 Bacteria 1493
298 Ga0500645_003999 3300053730 Bacteria 5801
299 Ga0500565_002092 3300053734 Bacteria 1449
300 Ga0500596_036805 3300053735 Bacteria 772
301 Ga0500661_003833 3300055283 Bacteria 2825
302 Ga0590071_001665 3300059421 Bacteria 5795
303 Ga0466962_0020486 3300061719 Bacteria 3177
304 2511242826 2511231002 Bacteria 5042903
305 2599621316 2599185214 Bacteria 8209958
306 2599671000 2599185226 Bacteria 8233575
307 2599679490 2599185227 Bacteria 8246414
308 2599690827 2599185229 Bacteria 8216126
309 2644339390 2643221660 Bacteria 4208257
310 2738722824 2738541277 Bacteria 7458140
311 2738883740 2738541307 Bacteria 8606193
312 2739283395 2738543019 Bacteria 7459457
313 2885200231 2885198086 Bacteria 7212419
314 2885213883 2885211737 Bacteria 7212420
315 2904543149 2904541872 Bacteria 8915136
316 2919708179 2919704043 Bacteria 5560311
317 2928071975 2928070936 Bacteria 8062541
318 2928085217 2928084124 Bacteria 7159212
319 2929160383 2929160207 Bacteria 9075316
320 2945915407 2945909444 Bacteria 7065066
321 2945989191 2945984333 Bacteria 7358892
322 Ga0450893_0022212
323 JGI24740J21852_10022390
324 JGI25155J39150_1000073
325 JGI25156J39149_1000609
326 JGI25154J39366_1000118
327 JGI25154J39366_1000258
328 JGI25157J39369_1000001
329 JGI25151J46595_10001868
330 JGI25151J46595_10004616
331 JGI25151J46595_10119263
332 Ga0055526_1007314
333 Ga0055524_1000046
334 Ga0055536_1012004
335 Ga0055530_10003387
336 Ga0055530_10033616
337 Ga0055540_1000007
338 Ga0055531_10007935
339 Ga0065165_1042205
340 Ga0070671_100007656
341 Ga0070674_100076003
342 Ga0070673_100215943
343 Ga0070667_100178239
344 Ga0070663_101079060
345 Ga0070678_100131176
346 Ga0068853_100016638
347 Ga0070665_100010388
348 Ga0070665_100023002
349 Ga0068855_100018189
350 Ga0068855_100032425
351 Ga0068854_100418338
352 Ga0068852_100163370
353 Ga0068864_100024461
354 Ga0075363_100008569
355 Ga0075363_100024397
356 Ga0075364_10281264
357 Ga0075367_10254787
358 Ga0075366_10001765
359 Ga0075366_10005718
360 Ga0075366_10020343
361 Ga0075370_10017276
362 Ga0075370_10198384
363 Ga0075370_10335891
364 Ga0068871_100301726
365 Ga0079104_1000009
366 Ga0105240_10233711
367 Ga0105240_10547778
368 Ga0105245_10726113
369 Ga0105247_10067567
370 Ga0105248_10007868
371 Ga0105248_10121748
372 Ga0105237_10026697
373 Ga0105237_10046180
374 Ga0105239_10138124
375 Ga0105239_10577363
376 Ga0105246_10026469
377 Ga0157373_10023813
378 Ga0157370_10006744
379 Ga0157369_10011362
380 Ga0157378_10129101
381 Ga0157378_10743625
382 Ga0182008_10005775
383 Ga0157379_10001445
384 Ga0163161_10004831
385 Ga0163161_10066569
386 Ga0209435_100001
387 Ga0209646_1000001
388 Ga0209026_1000001
389 Ga0209677_117464
390 Ga0209759_1000001
391 Ga0209129_1006240
392 Ga0209675_1011478
393 Ga0209675_1023804
394 Ga0209676_1001275
395 Ga0209025_1000294
396 Ga0209025_1005038
397 Ga0209025_1022436
398 Ga0209025_1023318
399 Ga0209564_1001181
400 Ga0209564_1001930
401 Ga0209758_1031713
402 Ga0209050_1000246
403 Ga0209050_1014309
404 Ga0209050_1019381
405 Ga0209050_1023914
406 Ga0209256_1000019
407 Ga0209256_1022539
408 Ga0207426_1018687
409 Ga0209051_1000004
410 Ga0209257_1000038
411 Ga0209257_1000044
412 Ga0209257_1003358
413 Ga0207695_10217195
414 Ga0207644_10035986
415 Ga0207669_10428715
416 Ga0207711_10296279
417 Ga0207711_10370460
418 Ga0207667_10023111
419 Ga0207667_10144190
420 Ga0207658_10160686
421 Ga0207639_10130329
422 Ga0207639_10634862
423 Ga0207639_10741978
424 Ga0207683_10039187
425 Ga0209281_1000023
426 Ga0268266_10011238
427 Ga0268266_10035699
428 Ga0307517_10108693
429 Ga0307517_10335994
430 Ga0307515_10000013
431 Ga0307515_10000037
432 Ga0307515_10000219
433 Ga0307515_10000374
434 Ga0307515_10003154
435 Ga0307515_10119346
436 Ga0307515_10127657
437 Ga0307515_10488298
438 Ga0307512_10060832
439 Ga0307512_10094176
440 Ga0307512_10094373
441 Ga0265328_10004159
442 Ga0265327_10000174
443 Ga0307513_10004807
444 Ga0307513_10013504
445 Ga0307509_10003945
446 Ga0307509_10034063
447 Ga0307509_10393075
448 Ga0307508_10201095
449 Ga0307514_10001231
450 Ga0307514_10001315
451 Ga0307514_10011100
452 Ga0307516_10000723
453 Ga0307516_10019586
454 Ga0307518_10185993
455 Ga0307410_11116804
456 Ga0307412_10009695
457 Ga0307412_10070719
458 Ga0307416_100004118
459 Ga0307510_10000779
460 Ga0307510_10016176
461 Ga0307510_10019461
462 Ga0307510_10076221
463 Ga0373949_0057999
464 Ga0373932_0039939
465 Ga0373943_0071880
466 Ga0373962_0097917
467 Ga0373925_0172902
468 Ga0395905_0000308
469 Ga0395905_0140881
470 Ga0451791_0043916
471 Ga0451791_0961966
472 Ga0451797_1479067
473 Ga0451804_0047533
474 Ga0451807_1280374
475 Ga0451841_1315363
476 Ga0451853_0522095
477 Ga0439431_0021897
478 Ga0450899_020674
479 Ga0451577_0006736
480 Ga0451577_0009535
481 Ga0451577_0030724
482 Ga0451577_0044151
483 Ga0451577_0047210
484 Ga0466969_0055960
485 Ga0453683_0165029
486 Ga0453683_0499695
487 Ga0466965_0012184
488 Ga0466961_0154736
489 Ga0466963_0211866
490 Ga0453684_0081577
491 Ga0453684_0121781
492 Ga0453684_0182616
493 Ga0453684_0206595
494 Ga0453684_0217184
495 Ga0466960_0082899
496 Ga0466959_0127028
497 Ga0451576_0008860
498 Ga0451576_0063098
499 Ga0451576_0283880
500 Ga0451576_0327895
501 Ga0451576_1361583
502 Ga0466958_0039281
503 Ga0495627_004465
504 Ga0495627_012162
505 Ga0495592_0000477
506 Ga0495629_0641313
507 Ga0495638_0128220
508 Ga0495606_0039406
509 Ga0495610_0043642
510 Ga0495616_0002296
511 Ga0495620_0007322
512 Ga0495620_0066255
513 Ga0495631_0000334
514 Ga0495632_0181549
515 Ga0495637_0001832
516 Ga0495637_0072576
517 Ga0495643_0093537
518 Ga0495648_0104565
519 Ga0495654_0161478
520 Ga0495622_0011744
521 Ga0495622_0047762
522 Ga0495656_0021724
523 Ga0495656_0066738
524 Ga0495625_0162501
525 Ga0495588_0025115
526 Ga0495658_0410657
527 Ga0495624_0092878
528 Ga0495670_0048351
529 Ga0495670_0087580
530 Ga0495671_0008007
531 Ga0495671_0071879
532 Ga0495676_0024267
533 Ga0495676_0037161
534 Ga0495686_0301624
535 Ga0495593_0056532
536 Ga0496102_0056223
537 Ga0496108_0224574
538 Ga0496109_0008367
539 Ga0496109_0083454
540 Ga0496109_1060259
541 Ga0496110_0022639
542 Ga0496110_0042982
543 Ga0496112_0077583
544 Ga0496113_0349860
545 Ga0496114_0002065
546 Ga0496114_0155545
547 Ga0496114_0503720
548 Ga0496116_0239190
549 Ga0496117_0195301
550 Ga0496117_0224622
551 Ga0496118_0019788
552 Ga0496118_0142672
553 Ga0496118_0368193
554 Ga0496121_0032009
555 Ga0496121_0111597
556 Ga0496121_0173489
557 Ga0496122_0065856
558 Ga0496122_0080498
559 Ga0496122_0136576
560 Ga0496123_0013667
561 Ga0496123_0055552
562 Ga0496123_0075431
563 Ga0496124_0056130
564 Ga0496124_0170842
565 Ga0496124_0319856
566 Ga0496124_0526460
567 Ga0496125_0040149
568 Ga0496125_0111554
569 Ga0496125_0195612
570 Ga0501222_009656
571 Ga0501252_003911
572 Ga0501259_070428
573 nmdc:mga03683_188662_c1
574 nmdc:mga00v17_405786_c1
575 nmdc:mga0k408_160520_c2
576 nmdc:mga0k408_2440_c1
577 nmdc:mga0k408_8024_c1
578 nmdc:mga06z11_100465_c1
579 nmdc:mga07m45_128263_c1
580 nmdc:mga07m45_235976_c1
581 nmdc:mga07m45_2920_c1
582 nmdc:mga07m45_424437_c1
583 nmdc:mga07m45_85998_c1
584 nmdc:mga0sz30_86673_c1
585 Ga0500610_0013259
586 Ga0500610_0028999
587 Ga0500643_011157
588 Ga0500644_0023858
589 Ga0500651_0000064
590 Ga0500651_0012926
591 Ga0500651_0081592
592 Ga0500566_0057174
593 Ga0500566_0353160
594 Ga0500641_0049368
595 Ga0500555_043064
596 Ga0500569_013294
597 Ga0500571_001190
598 Ga0500593_000439
599 Ga0500594_0001105
600 Ga0500594_0001586
601 Ga0500597_026326
602 Ga0500607_001602
603 Ga0500607_052488
604 Ga0500618_060325
605 Ga0500559_0000020
606 Ga0500559_0004902
607 Ga0500564_000623
608 Ga0500564_020225
609 Ga0500568_0011564
610 Ga0500568_0023395
611 Ga0500574_035208
612 Ga0500604_0044627
613 Ga0500619_000146
614 Ga0500622_0103299
615 Ga0500634_0009517
616 Ga0500634_0045870
617 Ga0500636_0219825
618 Ga0500570_078943
619 Ga0500645_003999
620 Ga0500565_002092
621 Ga0500596_036805
622 Ga0500661_003833
623 Ga0590071_001665
624 Ga0466962_0020486
625 2511242826
626 2599621316
627 2599671000
628 2599679490
629 2599690827
630 2644339390
631 2738722824
632 2738883740
633 2739283395
634 2885200231
635 2885213883
636 2904543149
637 2919708179
638 2928071975
639 2928085217
640 2929160383
641 2945915407
642 2945989191

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

24

70

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
4pxi-assembly1.cif.gz_C elucidation of the structural and functional mechanism of action of the tetr family protein, cprb from s. coelicolor a3(2) 0.7501 15 202
5gpa-assembly1.cif.gz_B structural analysis of fatty acid degradation regulator fadr from bacillus halodurans 0.745 21 202
3whc-assembly2.cif.gz_D crystal structure of a transcriptional regulator fadr from bacillus subtilis in complex with stearoyl-coa 0.7438 19 202
5ovy-assembly1.cif.gz_A crystal structure of mab_4384 tetr 0.7346 17 205
7xy0-assembly1.cif.gz_B hapr double mutant y76f, f171c 0.732 1 204
ID Description Score Start End Superfamily
3mvpA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9755 15 59 1.10.10.60
1pb6B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9753 16 68 1.10.10.60
4x1eB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9742 22 68 1.10.10.60
1jtyA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9728 19 65 1.10.10.60
3btlA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9719 19 65 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A840BW84-F1-model_v4 AcrR family transcriptional regulator 0.9729 5 205 GO:0000976
GO:0003700
AF-A0A2A7UQZ2-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9657 1 204 GO:0000976
GO:0003700
AF-A0A1M5R0K7-F1-model_v4 Transcriptional regulator, TetR family 0.9632 5 202 GO:0000976
GO:0003700
AF-D0J6V7-F1-model_v4 deleted 0.9599 25 205
AF-A0A840BW84-F1-model_v4 AcrR family transcriptional regulator 0.9589 5 205 GO:0000976
GO:0003700

Map