F403912

General Info

Members Datasets Scaffolds Average Seq Length
316 201 632 406

Family's Representative Sequence

Representative Sequence 3300053096|Ga0500641_0001049|Ga0500641_0001049_5258_6634
Length 458
Sequence MLIQMDKLFKRGQAGAAAVRLGRTSRGSRIGLEKAGRGRSRPGDKWNAIMKIFGQHDEATLRQLHDVASRAERVALMADGHLGYVMPIGGVAAYDNHISVVGVGFDIACGNAAIRTEMRLSDLGRDEADVRRALGEIADEIASTVSFGIGRKNRSDDAPTDDPLFEDPAWDAAPAKQRQALRDKARGQLGTVGSGNHYVDVFADESDTLWVGVHFGSRGFGHTVASGFLALGQGARWGQRVPEREVLLDLDAPLGHDYWHLMTLAGRYAYAGREWVARKVVSILGAHEVDLVHNHHNFAWKERHGSRDVVVIRKGATPAFPGQRGFIGGSMGDDAVIVEGTRAGDAVPPVVAQRQKEALYSTVHGAGRVMSRTAAAGKRKWGSNKILSPGRVSPQMMHDWIKRKGVILRGGGLDESPHVYRRLPDVLAAQEDTITVLHTLRPLVVAMAGADEFDPYKD

Samples

Sample ID Description Type Environment
1 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
2 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
21 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
24 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
27 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
28 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
29 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
30 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
31 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
32 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
33 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
34 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
35 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
38 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
41 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
42 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
43 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
44 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
45 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
49 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
51 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
52 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
53 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
54 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
55 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
56 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
57 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
58 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
59 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
93 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
94 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
95 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
96 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
97 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
98 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
99 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
100 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
101 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
102 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
103 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
104 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
105 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
106 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
107 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
108 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
109 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
110 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
111 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
112 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
113 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
114 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
115 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
116 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
117 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
118 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
119 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
120 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
121 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
122 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
123 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
124 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
125 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
126 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
127 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
128 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
129 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
130 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
131 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
132 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
133 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
134 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
135 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
136 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
137 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
138 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
139 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
140 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
141 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
142 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
143 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
144 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
145 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
146 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
147 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
148 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
149 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
150 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
151 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
152 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
153 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
154 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
155 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
156 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
157 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
158 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
159 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
160 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
161 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
162 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
163 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
164 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
165 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
166 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
167 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
168 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
169 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
170 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
171 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
172 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
173 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
174 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
175 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
176 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
177 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
178 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
179 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
180 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
181 3300049653 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_A_0_control Metagenome Rhizosphere
182 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
183 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
184 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
185 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
186 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
187 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
188 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
189 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
190 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
191 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
192 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
193 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
194 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
195 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
196 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
197 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
198 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
199 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
200 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
201 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.27
Nodule 0
Rhizoplane 3.8
Rhizosphere 94.3
Stem 0
Stem Tuber 0
Unclassified 8.23

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500641_0001049 3300053096 Bacteria 9850
2 Ga0065715_10099659 3300005293 Bacteria 3385
3 Ga0070658_10046604 3300005327 Bacteria 3508
4 Ga0070658_10110858 3300005327 Bacteria 2273
5 Ga0070658_10179779 3300005327 Bacteria 1780
6 Ga0070683_100057541 3300005329 Bacteria 3612
7 Ga0070683_100174481 3300005329 Bacteria 2041
8 Ga0070683_100248021 3300005329 Bacteria 1693
9 Ga0070670_100004129 3300005331 Bacteria 12133
10 Ga0070670_100156906 3300005331 Bacteria 1971
11 Ga0070680_100002292 3300005336 Bacteria 14158
12 Ga0070680_100008044 3300005336 Bacteria 8055
13 Ga0070687_100012363 3300005343 Bacteria 3769
14 Ga0070661_100236257 3300005344 Bacteria 1406
15 Ga0070692_10136421 3300005345 Unclassified 1384
16 Ga0070668_100016889 3300005347 Bacteria 5459
17 Ga0070669_100011841 3300005353 Bacteria 6188
18 Ga0070669_100013494 3300005353 Bacteria 5807
19 Ga0070669_100107052 3300005353 Bacteria 2118
20 Ga0070669_100114305 3300005353 Unclassified 2052
21 Ga0070675_100001846 3300005354 Bacteria 15611
22 Ga0070675_100056752 3300005354 Bacteria 3228
23 Ga0070671_100336203 3300005355 Bacteria 1288
24 Ga0070694_100064088 3300005444 Bacteria 2515
25 Ga0070694_100123730 3300005444 Bacteria 1859
26 Ga0070708_100010433 3300005445 Bacteria 7531
27 Ga0070708_100074684 3300005445 Bacteria 3058
28 Ga0070662_100104254 3300005457 Bacteria 2152
29 Ga0070681_10121507 3300005458 Bacteria 2546
30 Ga0068867_100071956 3300005459 Bacteria 2588
31 Ga0068867_100083339 3300005459 Bacteria 2414
32 Ga0070707_100010009 3300005468 Bacteria 8823
33 Ga0070707_100040505 3300005468 Bacteria 4457
34 Ga0070698_100051068 3300005471 Unclassified 4213
35 Ga0070698_100062214 3300005471 Unclassified 3766
36 Ga0070699_100009116 3300005518 Bacteria 8601
37 Ga0070699_100119018 3300005518 Bacteria 2322
38 Ga0070679_100015472 3300005530 Bacteria 7331
39 Ga0070684_100002155 3300005535 Bacteria 14535
40 Ga0070684_100067043 3300005535 Bacteria 3151
41 Ga0070697_100087077 3300005536 Bacteria 2578
42 Ga0070697_100241772 3300005536 Bacteria 1542
43 Ga0068853_100142276 3300005539 Bacteria 2154
44 Ga0070672_100081047 3300005543 Bacteria 2601
45 Ga0070686_100000057 3300005544 Bacteria 87468
46 Ga0070696_100001047 3300005546 Bacteria 17885
47 Ga0070696_100010233 3300005546 Bacteria 6278
48 Ga0070704_100010115 3300005549 Bacteria 5737
49 Ga0070704_100095863 3300005549 Bacteria 2223
50 Ga0070664_100032794 3300005564 Bacteria 4345
51 Ga0070664_100137573 3300005564 Bacteria 2149
52 Ga0070664_100205569 3300005564 Bacteria 1758
53 Ga0068857_100011983 3300005577 Bacteria 7542
54 Ga0068857_100013585 3300005577 Bacteria 7093
55 Ga0068854_100019336 3300005578 Bacteria 4588
56 Ga0068852_100032239 3300005616 Bacteria 4336
57 Ga0068859_100043901 3300005617 Bacteria 4492
58 Ga0068859_100114902 3300005617 Bacteria 2756
59 Ga0068861_100116715 3300005719 Bacteria 2147
60 Ga0068863_100050772 3300005841 Bacteria 3931
61 Ga0068860_100001804 3300005843 Bacteria 22768
62 Ga0068860_100017495 3300005843 Bacteria 6984
63 Ga0068862_100020715 3300005844 Bacteria 5493
64 Ga0068862_100075793 3300005844 Bacteria 2910
65 Ga0075428_100024666 3300006844 Bacteria 6657
66 Ga0075430_100063064 3300006846 Bacteria 3113
67 Ga0075431_100002183 3300006847 Bacteria 18708
68 Ga0075431_100032520 3300006847 Bacteria 5375
69 Ga0075431_100086804 3300006847 Bacteria 3229
70 Ga0075431_100150409 3300006847 Bacteria 2397
71 Ga0075433_10040016 3300006852 Bacteria 4056
72 Ga0075434_100004680 3300006871 Bacteria 12364
73 Ga0075434_100007966 3300006871 Bacteria 9821
74 Ga0075434_100013474 3300006871 Bacteria 7785
75 Ga0075429_100013708 3300006880 Bacteria 7027
76 Ga0097620_100043901 3300006931 Bacteria 4492
77 Ga0097620_100114902 3300006931 Bacteria 2756
78 Ga0075435_100032733 3300007076 Bacteria 4107
79 Ga0111539_10487158 3300009094 Bacteria 1436
80 Ga0105245_10410091 3300009098 Bacteria 1356
81 Ga0114129_10010408 3300009147 Bacteria 13267
82 Ga0114129_10022295 3300009147 Bacteria 8991
83 Ga0114129_10034478 3300009147 Bacteria 7149
84 Ga0114129_10099330 3300009147 Bacteria 4029
85 Ga0114129_10198633 3300009147 Bacteria 2718
86 Ga0114129_10545875 3300009147 Bacteria 1508
87 Ga0114129_10604019 3300009147 Bacteria 1421
88 Ga0105248_10187902 3300009177 Bacteria 2328
89 Ga0105248_10224051 3300009177 Bacteria 2117
90 Ga0105248_10245956 3300009177 Bacteria 2013
91 Ga0105248_10379621 3300009177 Bacteria 1591
92 Ga0105237_10223540 3300009545 Bacteria 1883
93 Ga0105249_10005271 3300009553 Bacteria 11161
94 Ga0105249_10388387 3300009553 Bacteria 1423
95 Ga0105246_10323841 3300011119 Bacteria 1254
96 Ga0157369_10029823 3300013105 Bacteria 6025
97 Ga0163162_10026581 3300013306 Bacteria 5721
98 Ga0163162_10180457 3300013306 Bacteria 2237
99 Ga0157372_10165463 3300013307 Bacteria 2557
100 Ga0157372_10187766 3300013307 Bacteria 2393
101 Ga0157375_10009379 3300013308 Bacteria 8593
102 Ga0157375_10093297 3300013308 Bacteria 3076
103 Ga0213875_10007128 3300021388 Bacteria 5808
104 Ga0207643_10002397 3300025908 Bacteria 10155
105 Ga0207643_10020274 3300025908 Bacteria 3648
106 Ga0207705_10075704 3300025909 Bacteria 2445
107 Ga0207707_10000714 3300025912 Bacteria 32936
108 Ga0207695_10011649 3300025913 Bacteria 10626
109 Ga0207671_10075959 3300025914 Bacteria 2513
110 Ga0207693_10028993 3300025915 Bacteria 4375
111 Ga0207660_10030678 3300025917 Bacteria 3696
112 Ga0207662_10002671 3300025918 Bacteria 8997
113 Ga0207652_10007998 3300025921 Bacteria 8487
114 Ga0207652_10056729 3300025921 Bacteria 3372
115 Ga0207652_10116715 3300025921 Bacteria 2371
116 Ga0207646_10037763 3300025922 Unclassified 4353
117 Ga0207681_10008996 3300025923 Bacteria 6100
118 Ga0207681_10016764 3300025923 Bacteria 4590
119 Ga0207650_10029744 3300025925 Bacteria 3928
120 Ga0207659_10026870 3300025926 Bacteria 3889
121 Ga0207644_10293452 3300025931 Bacteria 1308
122 Ga0207706_10124650 3300025933 Bacteria 2266
123 Ga0207670_10027025 3300025936 Bacteria 3623
124 Ga0207669_10020380 3300025937 Bacteria 3477
125 Ga0207691_10017236 3300025940 Bacteria 6852
126 Ga0207691_10031480 3300025940 Unclassified 4950
127 Ga0207691_10093268 3300025940 Bacteria 2696
128 Ga0207711_10217404 3300025941 Bacteria 1747
129 Ga0207711_10245899 3300025941 Unclassified 1641
130 Ga0207661_10008530 3300025944 Bacteria 7323
131 Ga0207679_10022924 3300025945 Bacteria 4259
132 Ga0207679_10025934 3300025945 Bacteria 4037
133 Ga0207679_10082507 3300025945 Bacteria 2461
134 Ga0207651_10097026 3300025960 Bacteria 2176
135 Ga0207640_10079631 3300025981 Bacteria 2234
136 Ga0207640_10204160 3300025981 Bacteria 1500
137 Ga0207658_10054665 3300025986 Bacteria 2955
138 Ga0207703_10127201 3300026035 Bacteria 2195
139 Ga0207708_10013330 3300026075 Bacteria 6141
140 Ga0207648_10084839 3300026089 Bacteria 2763
141 Ga0207648_10164829 3300026089 Unclassified 1958
142 Ga0207674_10021455 3300026116 Bacteria 6954
143 Ga0207674_10043587 3300026116 Bacteria 4625
144 Ga0207675_100039890 3300026118 Bacteria 4381
145 Ga0207683_10328964 3300026121 Bacteria 1400
146 Ga0207698_10122163 3300026142 Bacteria 2206
147 Ga0268265_10014043 3300028380 Bacteria 5455
148 Ga0268264_10179581 3300028381 Bacteria 1921
149 Ga0307408_100018398 3300031548 Bacteria 4690
150 Ga0307408_100028112 3300031548 Bacteria 3883
151 Ga0316579_10015073 3300031691 Bacteria 3352
152 Ga0316576_10027508 3300031727 Bacteria 4000
153 Ga0316578_10000126 3300031728 Bacteria 18985
154 Ga0316578_10029249 3300031728 Bacteria 3126
155 Ga0307405_10072273 3300031731 Unclassified 2223
156 Ga0307413_10017761 3300031824 Bacteria 3713
157 Ga0307413_10020041 3300031824 Bacteria 3547
158 Ga0307410_10005995 3300031852 Bacteria 6509
159 Ga0307410_10035564 3300031852 Bacteria 3235
160 Ga0307410_10140001 3300031852 Unclassified 1789
161 Ga0307410_10184137 3300031852 Bacteria 1583
162 Ga0307410_10197897 3300031852 Bacteria 1532
163 Ga0307406_10005976 3300031901 Bacteria 6680
164 Ga0307406_10078175 3300031901 Bacteria 2191
165 Ga0307407_10022248 3300031903 Bacteria 3285
166 Ga0307407_10062070 3300031903 Unclassified 2187
167 Ga0307407_10111824 3300031903 Bacteria 1716
168 Ga0307412_10120849 3300031911 Bacteria 1885
169 Ga0307412_10210263 3300031911 Bacteria 1484
170 Ga0307409_100023802 3300031995 Unclassified 4254
171 Ga0307409_100038968 3300031995 Bacteria 3521
172 Ga0307416_100066367 3300032002 Bacteria 2970
173 Ga0307416_100108014 3300032002 Bacteria 2444
174 Ga0307414_10217552 3300032004 Bacteria 1566
175 Ga0307411_10008560 3300032005 Bacteria 5310
176 Ga0307411_10041159 3300032005 Bacteria 2937
177 Ga0307411_10137655 3300032005 Bacteria 1795
178 Ga0307415_100001901 3300032126 Bacteria 10254
179 Ga0307415_100163890 3300032126 Bacteria 1726
180 Ga0373934_0001308 3300035086 Bacteria 9074
181 Ga0373944_0020334 3300035089 Bacteria 1911
182 Ga0373954_0037393 3300035118 Unclassified 2256
183 Ga0373956_0000651 3300035119 Bacteria 14275
184 Ga0316574_0055943 3300035398 Bacteria 2467
185 Ga0316574_0159243 3300035398 Bacteria 1454
186 Ga0373931_0024816 3300035691 Bacteria 3041
187 Ga0373947_0082763 3300035725 Bacteria 1989
188 Ga0373937_0001404 3300036401 Bacteria 20097
189 Ga0373937_0231851 3300036401 Bacteria 1739
190 Ga0316582_0095166 3300036647 Bacteria 1965
191 Ga0316584_0019330 3300036712 Bacteria 4923
192 Ga0436364_0258131 3300037853 Bacteria 6345
193 Ga0439462_0011200 3300042015 Bacteria 2280
194 Ga0451577_0110889 3300042876 Bacteria 2455
195 Ga0466963_0168596 3300044694 Bacteria 1526
196 Ga0453684_0224729 3300044712 Unclassified 2172
197 Ga0451576_0036982 3300045051 Bacteria 5172
198 Ga0451576_0173241 3300045051 Bacteria 2252
199 Ga0466967_0146509 3300045976 Bacteria 2203
200 Ga0466967_0283010 3300045976 Bacteria 1591
201 Ga0466967_0347898 3300045976 Bacteria 1434
202 Ga0495629_0017982 3300046459 Bacteria 5067
203 Ga0495638_0005190 3300046460 Bacteria 9738
204 Ga0495638_0056305 3300046460 Bacteria 2440
205 Ga0495641_0092243 3300046461 Bacteria 1353
206 Ga0495651_0000912 3300046462 Bacteria 22917
207 Ga0495651_0133427 3300046462 Unclassified 1810
208 Ga0495653_0001199 3300046463 Bacteria 20103
209 Ga0495582_0005734 3300046473 Bacteria 6916
210 Ga0495582_0020289 3300046473 Bacteria 3637
211 Ga0495639_0006209 3300046475 Bacteria 5131
212 Ga0495639_0032182 3300046475 Bacteria 2338
213 Ga0495662_0118656 3300046476 Unclassified 1298
214 Ga0495664_0009694 3300046477 Bacteria 5394
215 Ga0495664_0049826 3300046477 Unclassified 2486
216 Ga0495594_0020040 3300046499 Bacteria 3560
217 Ga0495594_0102787 3300046499 Bacteria 1608
218 Ga0495608_0006571 3300046511 Bacteria 8248
219 Ga0495618_0011357 3300046514 Bacteria 5398
220 Ga0495630_0014668 3300046517 Bacteria 5712
221 Ga0495630_0024181 3300046517 Bacteria 4493
222 Ga0495630_0094000 3300046517 Unclassified 2266
223 Ga0495652_0002112 3300046529 Bacteria 20944
224 Ga0495665_0052681 3300046531 Bacteria 2154
225 Ga0495665_0058417 3300046531 Bacteria 2036
226 Ga0495640_0024605 3300046533 Bacteria 4379
227 Ga0495640_0117601 3300046533 Unclassified 1730
228 Ga0495586_0016541 3300046535 Bacteria 3924
229 Ga0495587_0001990 3300046536 Bacteria 13643
230 Ga0495621_0010237 3300046539 Bacteria 2863
231 Ga0495645_0000437 3300046543 Bacteria 28683
232 Ga0495634_0017890 3300046642 Bacteria 5051
233 Ga0495635_0013278 3300046663 Bacteria 5763
234 Ga0495588_0010283 3300046674 Bacteria 4347
235 Ga0495657_0124474 3300046675 Unclassified 1621
236 Ga0495623_0000764 3300046679 Bacteria 21542
237 Ga0495658_0000055 3300046683 Bacteria 57250
238 Ga0495658_0006314 3300046683 Bacteria 5826
239 Ga0495613_0073441 3300046689 Bacteria 2492
240 Ga0495600_0000504 3300046809 Bacteria 20278
241 Ga0495600_0035312 3300046809 Bacteria 3246
242 Ga0495604_0001394 3300047317 Bacteria 19815
243 Ga0495604_0160742 3300047317 Unclassified 1587
244 Ga0495674_0018168 3300047319 Bacteria 6546
245 Ga0495674_0036698 3300047319 Bacteria 4409
246 Ga0495680_0026133 3300047322 Bacteria 4819
247 Ga0495680_0127294 3300047322 Unclassified 1874
248 Ga0495675_0031148 3300047444 Bacteria 3405
249 Ga0495685_029318 3300047447 Bacteria 1892
250 Ga0495684_0001162 3300047471 Bacteria 21167
251 Ga0495684_0009761 3300047471 Bacteria 7408
252 Ga0495684_0026248 3300047471 Unclassified 4475
253 Ga0495684_0088656 3300047471 Bacteria 2345
254 Ga0495593_0002391 3300047673 Bacteria 11282
255 Ga0495602_0002283 3300048088 Bacteria 19382
256 Ga0495614_0005788 3300048089 Bacteria 5567
257 Ga0496100_0016678 3300048903 Bacteria 4319
258 Ga0496101_0138745 3300048904 Bacteria 1852
259 Ga0496102_0001143 3300048905 Bacteria 24336
260 Ga0496104_0017776 3300048907 Bacteria 6482
261 Ga0496106_0043860 3300048909 Bacteria 3357
262 Ga0496107_0035963 3300048910 Bacteria 3552
263 Ga0496108_0018960 3300048911 Bacteria 5641
264 Ga0496109_0010979 3300048912 Bacteria 7762
265 Ga0496110_0085127 3300048913 Bacteria 2822
266 Ga0496112_0111807 3300048915 Bacteria 2701
267 Ga0496113_0147503 3300048916 Bacteria 1854
268 Ga0496114_0164700 3300048917 Bacteria 1930
269 Ga0501031_0007967 3300049568 Bacteria 6897
270 Ga0501036_0095803 3300049572 Bacteria 2509
271 Ga0501041_0040025 3300049577 Bacteria 2845
272 Ga0501048_0145091 3300049582 Bacteria 1679
273 Ga0501071_0027890 3300049587 Bacteria 3975
274 Ga0501072_0002918 3300049588 Bacteria 12865
275 Ga0501072_0038769 3300049588 Bacteria 3740
276 Ga0501075_0014160 3300049591 Bacteria 5714
277 Ga0501076_0151867 3300049592 Bacteria 1884
278 Ga0501076_0167530 3300049592 Bacteria 1791
279 Ga0501206_003153 3300049653 Unclassified 2095
280 Ga0501217_014843 3300049661 Unclassified 1766
281 Ga0501243_008990 3300049675 Bacteria 1548
282 Ga0501079_0154631 3300049741 Bacteria 1788
283 Ga0501080_0038704 3300049742 Bacteria 4452
284 Ga0501081_0044395 3300049743 Bacteria 3051
285 Ga0501045_0020832 3300049824 Bacteria 4686
286 nmdc:mga05p37_1786_c1 3300050507 Bacteria 25120
287 nmdc:mga05p37_282143_c1 3300050507 Bacteria 1980
288 nmdc:mga05p37_360415_c1 3300050507 Bacteria 1709
289 nmdc:mga09592_160720_c1 3300050508 Bacteria 1940
290 nmdc:mga09592_165853_c1 3300050508 Unclassified 1909
291 nmdc:mga0qj67_12027_c1 3300050509 Bacteria 6506
292 nmdc:mga0qj67_17138_c1 3300050509 Bacteria 5505
293 nmdc:mga0qj67_200805_c1 3300050509 Bacteria 1620
294 nmdc:mga0qj67_80863_c1 3300050509 Bacteria 2604
295 nmdc:mga06r32_264886_c1 3300050510 Bacteria 1706
296 nmdc:mga06r32_274567_c1 3300050510 Bacteria 1673
297 nmdc:mga06r32_50486_c1 3300050510 Bacteria 3979
298 nmdc:mga06r32_6942_c1 3300050510 Bacteria 10182
299 nmdc:mga0n895_206381_c1 3300050512 Bacteria 1995
300 nmdc:mga0n895_553_c1 3300050512 Bacteria 25620
301 nmdc:mga0n895_55790_c1 3300050512 Bacteria 3889
302 nmdc:mga0rr50_314073_c1 3300050513 Bacteria 1313
303 nmdc:mga0rr50_80316_c1 3300050513 Bacteria 2514
304 nmdc:mga0a205_108766_c1 3300050515 Bacteria 2671
305 nmdc:mga0a205_21664_c1 3300050515 Bacteria 6075
306 nmdc:mga0a205_3952_c1 3300050515 Bacteria 13256
307 nmdc:mga0a205_64957_c1 3300050515 Bacteria 3525
308 nmdc:mga0a205_79903_c1 3300050515 Bacteria 3160
309 Ga0495601_0029387 3300053077 Bacteria 3409
310 Ga0495612_0006434 3300053078 Bacteria 4828
311 Ga0500555_000559 3300053103 Bacteria 14791
312 Ga0500568_0010240 3300053139 Bacteria 4402
313 Ga0500616_0000616 3300053153 Bacteria 43214
314 Ga0501084_0128508 3300054114 Bacteria 2133
315 Ga0590071_009945 3300059421 Bacteria 2230
316 Ga0590071_018269 3300059421 Bacteria 1649
317 Ga0500641_0001049
318 Ga0065715_10099659
319 Ga0070658_10046604
320 Ga0070658_10110858
321 Ga0070658_10179779
322 Ga0070683_100057541
323 Ga0070683_100174481
324 Ga0070683_100248021
325 Ga0070670_100004129
326 Ga0070670_100156906
327 Ga0070680_100002292
328 Ga0070680_100008044
329 Ga0070687_100012363
330 Ga0070661_100236257
331 Ga0070692_10136421
332 Ga0070668_100016889
333 Ga0070669_100011841
334 Ga0070669_100013494
335 Ga0070669_100107052
336 Ga0070669_100114305
337 Ga0070675_100001846
338 Ga0070675_100056752
339 Ga0070671_100336203
340 Ga0070694_100064088
341 Ga0070694_100123730
342 Ga0070708_100010433
343 Ga0070708_100074684
344 Ga0070662_100104254
345 Ga0070681_10121507
346 Ga0068867_100071956
347 Ga0068867_100083339
348 Ga0070707_100010009
349 Ga0070707_100040505
350 Ga0070698_100051068
351 Ga0070698_100062214
352 Ga0070699_100009116
353 Ga0070699_100119018
354 Ga0070679_100015472
355 Ga0070684_100002155
356 Ga0070684_100067043
357 Ga0070697_100087077
358 Ga0070697_100241772
359 Ga0068853_100142276
360 Ga0070672_100081047
361 Ga0070686_100000057
362 Ga0070696_100001047
363 Ga0070696_100010233
364 Ga0070704_100010115
365 Ga0070704_100095863
366 Ga0070664_100032794
367 Ga0070664_100137573
368 Ga0070664_100205569
369 Ga0068857_100011983
370 Ga0068857_100013585
371 Ga0068854_100019336
372 Ga0068852_100032239
373 Ga0068859_100043901
374 Ga0068859_100114902
375 Ga0068861_100116715
376 Ga0068863_100050772
377 Ga0068860_100001804
378 Ga0068860_100017495
379 Ga0068862_100020715
380 Ga0068862_100075793
381 Ga0075428_100024666
382 Ga0075430_100063064
383 Ga0075431_100002183
384 Ga0075431_100032520
385 Ga0075431_100086804
386 Ga0075431_100150409
387 Ga0075433_10040016
388 Ga0075434_100004680
389 Ga0075434_100007966
390 Ga0075434_100013474
391 Ga0075429_100013708
392 Ga0097620_100043901
393 Ga0097620_100114902
394 Ga0075435_100032733
395 Ga0111539_10487158
396 Ga0105245_10410091
397 Ga0114129_10010408
398 Ga0114129_10022295
399 Ga0114129_10034478
400 Ga0114129_10099330
401 Ga0114129_10198633
402 Ga0114129_10545875
403 Ga0114129_10604019
404 Ga0105248_10187902
405 Ga0105248_10224051
406 Ga0105248_10245956
407 Ga0105248_10379621
408 Ga0105237_10223540
409 Ga0105249_10005271
410 Ga0105249_10388387
411 Ga0105246_10323841
412 Ga0157369_10029823
413 Ga0163162_10026581
414 Ga0163162_10180457
415 Ga0157372_10165463
416 Ga0157372_10187766
417 Ga0157375_10009379
418 Ga0157375_10093297
419 Ga0213875_10007128
420 Ga0207643_10002397
421 Ga0207643_10020274
422 Ga0207705_10075704
423 Ga0207707_10000714
424 Ga0207695_10011649
425 Ga0207671_10075959
426 Ga0207693_10028993
427 Ga0207660_10030678
428 Ga0207662_10002671
429 Ga0207652_10007998
430 Ga0207652_10056729
431 Ga0207652_10116715
432 Ga0207646_10037763
433 Ga0207681_10008996
434 Ga0207681_10016764
435 Ga0207650_10029744
436 Ga0207659_10026870
437 Ga0207644_10293452
438 Ga0207706_10124650
439 Ga0207670_10027025
440 Ga0207669_10020380
441 Ga0207691_10017236
442 Ga0207691_10031480
443 Ga0207691_10093268
444 Ga0207711_10217404
445 Ga0207711_10245899
446 Ga0207661_10008530
447 Ga0207679_10022924
448 Ga0207679_10025934
449 Ga0207679_10082507
450 Ga0207651_10097026
451 Ga0207640_10079631
452 Ga0207640_10204160
453 Ga0207658_10054665
454 Ga0207703_10127201
455 Ga0207708_10013330
456 Ga0207648_10084839
457 Ga0207648_10164829
458 Ga0207674_10021455
459 Ga0207674_10043587
460 Ga0207675_100039890
461 Ga0207683_10328964
462 Ga0207698_10122163
463 Ga0268265_10014043
464 Ga0268264_10179581
465 Ga0307408_100018398
466 Ga0307408_100028112
467 Ga0316579_10015073
468 Ga0316576_10027508
469 Ga0316578_10000126
470 Ga0316578_10029249
471 Ga0307405_10072273
472 Ga0307413_10017761
473 Ga0307413_10020041
474 Ga0307410_10005995
475 Ga0307410_10035564
476 Ga0307410_10140001
477 Ga0307410_10184137
478 Ga0307410_10197897
479 Ga0307406_10005976
480 Ga0307406_10078175
481 Ga0307407_10022248
482 Ga0307407_10062070
483 Ga0307407_10111824
484 Ga0307412_10120849
485 Ga0307412_10210263
486 Ga0307409_100023802
487 Ga0307409_100038968
488 Ga0307416_100066367
489 Ga0307416_100108014
490 Ga0307414_10217552
491 Ga0307411_10008560
492 Ga0307411_10041159
493 Ga0307411_10137655
494 Ga0307415_100001901
495 Ga0307415_100163890
496 Ga0373934_0001308
497 Ga0373944_0020334
498 Ga0373954_0037393
499 Ga0373956_0000651
500 Ga0316574_0055943
501 Ga0316574_0159243
502 Ga0373931_0024816
503 Ga0373947_0082763
504 Ga0373937_0001404
505 Ga0373937_0231851
506 Ga0316582_0095166
507 Ga0316584_0019330
508 Ga0436364_0258131
509 Ga0439462_0011200
510 Ga0451577_0110889
511 Ga0466963_0168596
512 Ga0453684_0224729
513 Ga0451576_0036982
514 Ga0451576_0173241
515 Ga0466967_0146509
516 Ga0466967_0283010
517 Ga0466967_0347898
518 Ga0495629_0017982
519 Ga0495638_0005190
520 Ga0495638_0056305
521 Ga0495641_0092243
522 Ga0495651_0000912
523 Ga0495651_0133427
524 Ga0495653_0001199
525 Ga0495582_0005734
526 Ga0495582_0020289
527 Ga0495639_0006209
528 Ga0495639_0032182
529 Ga0495662_0118656
530 Ga0495664_0009694
531 Ga0495664_0049826
532 Ga0495594_0020040
533 Ga0495594_0102787
534 Ga0495608_0006571
535 Ga0495618_0011357
536 Ga0495630_0014668
537 Ga0495630_0024181
538 Ga0495630_0094000
539 Ga0495652_0002112
540 Ga0495665_0052681
541 Ga0495665_0058417
542 Ga0495640_0024605
543 Ga0495640_0117601
544 Ga0495586_0016541
545 Ga0495587_0001990
546 Ga0495621_0010237
547 Ga0495645_0000437
548 Ga0495634_0017890
549 Ga0495635_0013278
550 Ga0495588_0010283
551 Ga0495657_0124474
552 Ga0495623_0000764
553 Ga0495658_0000055
554 Ga0495658_0006314
555 Ga0495613_0073441
556 Ga0495600_0000504
557 Ga0495600_0035312
558 Ga0495604_0001394
559 Ga0495604_0160742
560 Ga0495674_0018168
561 Ga0495674_0036698
562 Ga0495680_0026133
563 Ga0495680_0127294
564 Ga0495675_0031148
565 Ga0495685_029318
566 Ga0495684_0001162
567 Ga0495684_0009761
568 Ga0495684_0026248
569 Ga0495684_0088656
570 Ga0495593_0002391
571 Ga0495602_0002283
572 Ga0495614_0005788
573 Ga0496100_0016678
574 Ga0496101_0138745
575 Ga0496102_0001143
576 Ga0496104_0017776
577 Ga0496106_0043860
578 Ga0496107_0035963
579 Ga0496108_0018960
580 Ga0496109_0010979
581 Ga0496110_0085127
582 Ga0496112_0111807
583 Ga0496113_0147503
584 Ga0496114_0164700
585 Ga0501031_0007967
586 Ga0501036_0095803
587 Ga0501041_0040025
588 Ga0501048_0145091
589 Ga0501071_0027890
590 Ga0501072_0002918
591 Ga0501072_0038769
592 Ga0501075_0014160
593 Ga0501076_0151867
594 Ga0501076_0167530
595 Ga0501206_003153
596 Ga0501217_014843
597 Ga0501243_008990
598 Ga0501079_0154631
599 Ga0501080_0038704
600 Ga0501081_0044395
601 Ga0501045_0020832
602 nmdc:mga05p37_1786_c1
603 nmdc:mga05p37_282143_c1
604 nmdc:mga05p37_360415_c1
605 nmdc:mga09592_160720_c1
606 nmdc:mga09592_165853_c1
607 nmdc:mga0qj67_12027_c1
608 nmdc:mga0qj67_17138_c1
609 nmdc:mga0qj67_200805_c1
610 nmdc:mga0qj67_80863_c1
611 nmdc:mga06r32_264886_c1
612 nmdc:mga06r32_274567_c1
613 nmdc:mga06r32_50486_c1
614 nmdc:mga06r32_6942_c1
615 nmdc:mga0n895_206381_c1
616 nmdc:mga0n895_553_c1
617 nmdc:mga0n895_55790_c1
618 nmdc:mga0rr50_314073_c1
619 nmdc:mga0rr50_80316_c1
620 nmdc:mga0a205_108766_c1
621 nmdc:mga0a205_21664_c1
622 nmdc:mga0a205_3952_c1
623 nmdc:mga0a205_64957_c1
624 nmdc:mga0a205_79903_c1
625 Ga0495601_0029387
626 Ga0495612_0006434
627 Ga0500555_000559
628 Ga0500568_0010240
629 Ga0500616_0000616
630 Ga0501084_0128508
631 Ga0590071_009945
632 Ga0590071_018269

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01139

RtcB

tRNA-splicing ligase RtcB

60

448

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
8dcb-assembly2.cif.gz_B rna ligase rtcb from pyrococcus horikoshii in complex with ni2+ and gtp 0.7788 25 410
4dwr-assembly3.cif.gz_C rna ligase rtcb/mn2+ complex 0.7526 25 414
7p3b-assembly2.cif.gz_B human rna ligase rtcb in complex with gmp and co(ii) 0.7204 25 410
8dcb-assembly2.cif.gz_B rna ligase rtcb from pyrococcus horikoshii in complex with ni2+ and gtp 0.7179 25 410
7p3b-assembly1.cif.gz_A human rna ligase rtcb in complex with gmp and co(ii) 0.7108 25 410
ID Description Score Start End Superfamily
af_Q8I5J3_323_568_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.7851 186 410 3.90.1860.10
af_Q99LF4_9_505_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.7802 25 410 3.90.1860.10
1uc2A00 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.7627 25 410 3.90.1860.10
af_Q4DZR4_37_449_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.7556 8 410 3.90.1860.10
af_Q4DZR4_37_449_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.737 8 410 3.90.1860.10
ID Description Score Start End GO Terms
AF-A0A2V7T3E9-F1-model_v4 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) 0.964 232 340 GO:0003909
GO:0005525
GO:0006281
GO:0006396
GO:0030145
GO:0042245
GO:0170057
AF-A0A7W1BN14-F1-model_v4 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) 0.9604 16 262 GO:0003909
GO:0005525
GO:0006281
GO:0006396
GO:0030145
GO:0042245
AF-A0A2V7T3E9-F1-model_v4 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) 0.9555 232 340 GO:0003909
GO:0005525
GO:0006281
GO:0006396
GO:0030145
GO:0042245
GO:0170057
AF-A0A7W1BN14-F1-model_v4 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) 0.9529 16 262 GO:0003909
GO:0005525
GO:0006281
GO:0006396
GO:0030145
GO:0042245
AF-A0A7Y5TW48-F1-model_v4 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) 0.9526 16 390 GO:0003909
GO:0005525
GO:0006281
GO:0006396
GO:0030145
GO:0042245

Map