F402476

General Info

Members Datasets Scaffolds Average Seq Length
313 249 627 444

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2997451912|2997455240
Length 489
Sequence NTAPQITADPAQAADPSKALDPTNAADPTTRTAPAPPPPPTGSPQESPISPYENYVYAYPHKTAYRPRPDRPTLRDLWASEPQDALSLYLHIPFCEVRCGFCNLFTRIGAPGDMASEYLDALERQSAAVRDALHPDARFAAAAFGGGTPTFLSAGELARLCDIAELRMGADLRAVPLSVETSPSTATADRLGVLAERGATRISIGVQSFIEAEARAAVRPQDPHEVAAALDRIRESGVPVLNIDLIYGIDGQTERSWQRSLDTALTWRPEELYLYPLYVRPLTGLGRRDPGAPDPEWDAQRLRLYRHGRDHLLAAGYEQVSMRMFRRRGAATPASGGDDHACQTDGMIGLGCGARSYTSRLHYSFDYAVGMTDIRSIIDHYISRPASAFAHAEFGWEMTEDEARRRNLLQSVLQAEGMATADYRARFGSAPADDFPAELARFADRGWLDTAAAPGRLRLSAEGLAYSDALGPMLFSPAVRARMAAYDLK

Samples

Sample ID Description Type Environment
1 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
7 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
8 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
9 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
10 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
11 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
12 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
13 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
14 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
15 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
20 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
21 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
22 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
23 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
24 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
31 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
32 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
33 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
34 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
36 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
37 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
38 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
39 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
42 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
52 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
54 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
55 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
56 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
57 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
58 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
59 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
60 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
61 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
62 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
63 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
64 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
65 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
66 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
67 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
68 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
69 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
70 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
71 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
72 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
73 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
74 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
75 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
76 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
77 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
78 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
79 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
80 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
81 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
82 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
83 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
84 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
85 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
86 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
87 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
88 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
89 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
90 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
91 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
92 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
93 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
94 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
95 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
96 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
97 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
98 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
99 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
100 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
101 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
102 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
103 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
104 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
105 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
106 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
107 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
108 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
109 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
110 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
111 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
112 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
113 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
114 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
115 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
116 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
117 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
118 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
119 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
120 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
121 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
122 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
123 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
124 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
125 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
126 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
127 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
128 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
129 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
130 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
131 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
132 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
133 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
134 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
135 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
136 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
137 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
138 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
139 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
140 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
141 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
142 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
143 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
144 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
145 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
146 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
147 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
148 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
151 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
153 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
154 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
155 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
156 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
157 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
158 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
159 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
160 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
161 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
162 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
163 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
164 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
165 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
166 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
167 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
168 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
169 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
170 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
171 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
172 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
173 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
174 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
175 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
176 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
177 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
178 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
179 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
180 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
181 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
182 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
183 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
184 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
185 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
186 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
187 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
188 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
189 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
190 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
191 2643221548 Streptomyces sp. Root55 Isolate Unclassified
192 2643221578 Streptomyces sp. Root63 Isolate Unclassified
193 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
194 2643221593 Lysobacter sp. Root690 Isolate Unclassified
195 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
196 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
197 2643221638 Duganella sp. Root336D2 Isolate Unclassified
198 2643221670 Streptomyces sp. Root431 Isolate Unclassified
199 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
200 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
201 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
202 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
203 2643221714 Streptomyces sp. Root264 Isolate Unclassified
204 2671180195 Frankia sp. CcI49 Isolate Nodule
205 2675902999 Frankia asymbiotica NRRL B-16386 Isolate Nodule
206 2687453743 Frankia colletiae Cc1.17 Isolate Nodule
207 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
208 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
209 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
210 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
211 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
212 2773857922 Frankia sp. CcI49 Isolate Nodule
213 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
214 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
215 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
216 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
217 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
218 2855683550 Micromonospora sp. RP3T Isolate Unclassified
219 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
220 2862705112 Streptomyces triticirhizae NEAU-YY642 Isolate Rhizosphere
221 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
222 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
223 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
224 2867428634 Streptomyces sp. RP5T Isolate Unclassified
225 2873314349 Sphaerisporangium siamense DSM 45784 Isolate Rhizosphere
226 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
227 2889300758 Rhodococcus sp. PvR099 Isolate Rhizosphere
228 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
229 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
230 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
231 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
232 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
233 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
234 2920107658 Aquisphaera insulae JC669 Isolate Rhizosphere
235 2939743619 Rhodococcus sp. PvR044 Isolate Rhizosphere
236 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
237 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
238 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
239 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
240 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
241 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
242 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
243 8002775197 Frankia nepalensis CN7 Isolate Nodule
244 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
245 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
246 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
247 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
248 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
249 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 79.55
Metatranscriptomes 0
Isolates 20.45

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.95
Nodule 2.24
Rhizoplane 0.64
Rhizosphere 70.29
Stem 0
Stem Tuber 0
Unclassified 0.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24751J29686_10000111 3300002459 Bacteria 42772
2 rootH1_10021813 3300003316 Bacteria 10095
3 rootH1_10021813 3300003323 Bacteria 6866
4 rootH2_10007644 3300003320 Bacteria 7023
5 rootL2_10044268 3300003322 Bacteria 12698
6 rootH1_10004284 3300003323 Bacteria 4479
7 rootH1_10112460 3300003323 Bacteria 2726
8 Ga0055526_1005034 3300003771 Bacteria 7725
9 Ga0055537_1002971 3300003773 Bacteria 5367
10 Ga0055524_1003477 3300003775 Bacteria 7638
11 Ga0055530_10003462 3300003791 Bacteria 8969
12 Ga0055530_10007193 3300003791 Bacteria 4751
13 Ga0055531_10026270 3300003794 Bacteria 2082
14 Ga0070670_100000216 3300005331 Bacteria 53372
15 Ga0070689_100001915 3300005340 Bacteria 13455
16 Ga0070689_100009127 3300005340 Bacteria 7022
17 Ga0070688_100011651 3300005365 Bacteria 4894
18 Ga0070688_100067125 3300005365 Bacteria 2284
19 Ga0070713_100243054 3300005436 Bacteria 1640
20 Ga0070664_100098372 3300005564 Bacteria 2541
21 Ga0068859_100000134 3300005617 Bacteria 69536
22 Ga0068859_100062642 3300005617 Unclassified 3750
23 Ga0068864_100131991 3300005618 Bacteria 2245
24 Ga0068863_100079014 3300005841 Bacteria 3116
25 Ga0081455_10002554 3300005937 Bacteria 21608
26 Ga0075365_10108200 3300006038 Bacteria 1909
27 Ga0075367_10027000 3300006178 Bacteria 3262
28 Ga0075366_10025121 3300006195 Bacteria 3477
29 Ga0075430_100009960 3300006846 Bacteria 8040
30 Ga0075431_100167474 3300006847 Bacteria 2258
31 Ga0075431_100200027 3300006847 Bacteria 2044
32 Ga0075429_100005414 3300006880 Bacteria 10988
33 Ga0075429_100050745 3300006880 Bacteria 3609
34 Ga0097620_100000134 3300006931 Bacteria 69536
35 Ga0097620_100062642 3300006931 Unclassified 3750
36 Ga0105240_10091548 3300009093 Bacteria 3715
37 Ga0111539_10057645 3300009094 Bacteria 4611
38 Ga0114129_10024810 3300009147 Bacteria 8499
39 Ga0105243_10002237 3300009148 Bacteria 16270
40 Ga0163163_10000040 3300014325 Bacteria 147484
41 Ga0163163_10000250 3300014325 Bacteria 54990
42 Ga0182006_1016020 3300015261 Bacteria 3203
43 Ga0207427_101348 3300025231 Bacteria 9074
44 Ga0209677_102581 3300025253 Bacteria 6649
45 Ga0209565_1001402 3300025263 Bacteria 10728
46 Ga0209565_1001596 3300025263 Bacteria 9617
47 Ga0209675_1003915 3300025291 Bacteria 6835
48 Ga0209564_1000272 3300025295 Bacteria 108384
49 Ga0209758_1030968 3300025297 Bacteria 2204
50 Ga0209050_1000164 3300025298 Bacteria 154628
51 Ga0209050_1001824 3300025298 Bacteria 20728
52 Ga0209256_1000427 3300025299 Bacteria 66034
53 Ga0207426_1011071 3300025302 Bacteria 3459
54 Ga0209257_1011628 3300025304 Bacteria 4205
55 Ga0207705_10173020 3300025909 Bacteria 1626
56 Ga0207695_10098759 3300025913 Bacteria 2918
57 Ga0207646_10060959 3300025922 Bacteria 3368
58 Ga0207646_10211185 3300025922 Bacteria 1753
59 Ga0207650_10000269 3300025925 Bacteria 54998
60 Ga0207709_10004753 3300025935 Bacteria 7793
61 Ga0207670_10002606 3300025936 Bacteria 9484
62 Ga0207668_10001389 3300025972 Bacteria 14278
63 Ga0207674_10331616 3300026116 Bacteria 1471
64 Ga0207428_10023550 3300027907 Bacteria 5177
65 Ga0268266_10165548 3300028379 Bacteria 2003
66 Ga0307517_10013107 3300028786 Bacteria 11297
67 Ga0307515_10000055 3300028794 Bacteria 264365
68 Ga0307515_10004522 3300028794 Bacteria 28732
69 Ga0307515_10026497 3300028794 Bacteria 9975
70 Ga0265327_10009613 3300031251 Bacteria 6945
71 Ga0307513_10010869 3300031456 Bacteria 11370
72 Ga0307509_10043635 3300031507 Bacteria 4851
73 Ga0307408_100000146 3300031548 Bacteria 78996
74 Ga0307408_100001328 3300031548 Bacteria 18536
75 Ga0307514_10135077 3300031649 Bacteria 1690
76 Ga0307410_10087498 3300031852 Bacteria 2204
77 Ga0307415_100037513 3300032126 Bacteria 3186
78 Ga0307507_10008532 3300033179 Bacteria 14118
79 Ga0307510_10036223 3300033180 Bacteria 5494
80 Ga0307510_10046501 3300033180 Bacteria 4664
81 Ga0373934_0015534 3300035086 Bacteria 2890
82 Ga0373927_0002939 3300035695 Bacteria 12382
83 Ga0373925_0000251 3300037068 Bacteria 56652
84 Ga0400484_07574 3300038725 Bacteria 6486
85 Ga0400490_32794 3300038726 Bacteria 30708
86 Ga0400488_18743 3300038741 Bacteria 6927
87 Ga0400483_066858 3300039062 Bacteria 4342
88 Ga0400487_18560 3300039110 Bacteria 20895
89 Ga0439439_0009356 3300041406 Bacteria 2330
90 Ga0451853_0422012 3300041512 Bacteria 3659
91 Ga0451853_1987783 3300041512 Bacteria 7863
92 Ga0439433_0018191 3300041999 Bacteria 1563
93 Ga0439449_0000416 3300042007 Bacteria 15726
94 Ga0439449_0016208 3300042007 Bacteria 2802
95 Ga0439457_002107 3300042014 Bacteria 5794
96 Ga0450894_000648 3300042131 Bacteria 5814
97 Ga0450896_001123 3300042133 Bacteria 3180
98 Ga0450898_000744 3300042134 Bacteria 3984
99 Ga0450899_001276 3300042135 Bacteria 2847
100 Ga0450899_004082 3300042135 Bacteria 1563
101 Ga0450906_003557 3300042145 Bacteria 3347
102 Ga0466972_0004258 3300044658 Bacteria 7151
103 Ga0466972_0016630 3300044658 Bacteria 3677
104 Ga0466965_0004788 3300044683 Bacteria 6036
105 Ga0466966_0003079 3300044684 Bacteria 10991
106 Ga0466961_0022589 3300044693 Bacteria 4047
107 Ga0466963_0005798 3300044694 Bacteria 7266
108 Ga0466964_0012988 3300044706 Bacteria 3155
109 Ga0466971_0000089 3300044719 Bacteria 33395
110 Ga0466968_0000754 3300044735 Bacteria 11221
111 Ga0466970_0010067 3300044765 Bacteria 4790
112 Ga0466957_0096985 3300044842 Bacteria 1854
113 Ga0466957_0131046 3300044842 Bacteria 1606
114 Ga0466960_0016893 3300044901 Bacteria 3173
115 Ga0466959_0000748 3300045049 Bacteria 19030
116 Ga0466959_0003518 3300045049 Bacteria 10281
117 Ga0466958_0046920 3300045836 Bacteria 2607
118 Ga0466967_0000502 3300045976 Bacteria 19155
119 Ga0495592_0001862 3300046454 Bacteria 14850
120 Ga0495603_0014266 3300046455 Bacteria 4807
121 Ga0495629_0002320 3300046459 Bacteria 14652
122 Ga0495629_0002656 3300046459 Bacteria 13706
123 Ga0495629_0007282 3300046459 Bacteria 8149
124 Ga0495651_0006752 3300046462 Bacteria 8768
125 Ga0495653_0015082 3300046463 Bacteria 6298
126 Ga0495580_0004031 3300046472 Bacteria 12394
127 Ga0495662_0000234 3300046476 Bacteria 23223
128 Ga0495664_0001082 3300046477 Bacteria 14067
129 Ga0495664_0106249 3300046477 Bacteria 1693
130 Ga0495594_0001000 3300046499 Bacteria 14706
131 Ga0495594_0030037 3300046499 Bacteria 2939
132 Ga0495594_0072665 3300046499 Bacteria 1914
133 Ga0495607_0000252 3300046501 Bacteria 57555
134 Ga0495608_0000914 3300046511 Bacteria 20717
135 Ga0495610_0045100 3300046512 Bacteria 2183
136 Ga0495628_0002367 3300046516 Bacteria 17016
137 Ga0495628_0190548 3300046516 Bacteria 1548
138 Ga0495630_0019302 3300046517 Bacteria 5009
139 Ga0495632_0006184 3300046519 Bacteria 7750
140 Ga0495643_0043590 3300046522 Bacteria 2441
141 Ga0495652_0005044 3300046529 Bacteria 12500
142 Ga0495665_0004633 3300046531 Bacteria 7420
143 Ga0495640_0003811 3300046533 Bacteria 12107
144 Ga0495586_0001900 3300046535 Bacteria 11372
145 Ga0495587_0001445 3300046536 Bacteria 15834
146 Ga0495645_0013840 3300046543 Bacteria 5716
147 Ga0495622_0010446 3300046557 Bacteria 4288
148 Ga0495667_0044009 3300046559 Bacteria 2956
149 Ga0495656_0036748 3300046615 Bacteria 2019
150 Ga0495634_0006710 3300046642 Bacteria 8720
151 Ga0495634_0032781 3300046642 Bacteria 3570
152 Ga0495625_0016819 3300046660 Bacteria 5743
153 Ga0495635_0007668 3300046663 Bacteria 7530
154 Ga0495588_0008390 3300046674 Bacteria 4739
155 Ga0495657_0032878 3300046675 Bacteria 3615
156 Ga0495623_0019709 3300046679 Bacteria 4360
157 Ga0495646_0009379 3300046680 Bacteria 6208
158 Ga0495613_0004039 3300046689 Bacteria 10976
159 Ga0495613_0035248 3300046689 Bacteria 3714
160 Ga0495613_0060508 3300046689 Bacteria 2773
161 Ga0495624_0090232 3300046690 Bacteria 1891
162 Ga0495671_0008670 3300046692 Bacteria 5711
163 Ga0495589_0078862 3300046794 Bacteria 1603
164 Ga0495600_0003386 3300046809 Bacteria 9381
165 Ga0495600_0028707 3300046809 Bacteria 3600
166 Ga0495581_0017189 3300047315 Bacteria 4204
167 Ga0495581_0018303 3300047315 Bacteria 4070
168 Ga0495604_0000225 3300047317 Bacteria 51285
169 Ga0495604_0002030 3300047317 Bacteria 16346
170 Ga0495604_0008576 3300047317 Bacteria 8075
171 Ga0495636_0000822 3300047318 Bacteria 11445
172 Ga0495674_0019282 3300047319 Bacteria 6333
173 Ga0495676_0015396 3300047321 Bacteria 6811
174 Ga0495676_0022470 3300047321 Bacteria 5486
175 Ga0495676_0031043 3300047321 Bacteria 4525
176 Ga0495687_004171 3300047443 Bacteria 9925
177 Ga0495675_0001373 3300047444 Bacteria 14733
178 Ga0495675_0007685 3300047444 Bacteria 6649
179 Ga0495675_0009278 3300047444 Bacteria 6121
180 Ga0495675_0065619 3300047444 Bacteria 2295
181 Ga0495685_010269 3300047447 Bacteria 3138
182 Ga0495681_0002176 3300047470 Bacteria 14202
183 Ga0495684_0008023 3300047471 Bacteria 8163
184 Ga0495686_0066810 3300047472 Bacteria 2221
185 Ga0495602_0008697 3300048088 Bacteria 10595
186 Ga0495614_0002630 3300048089 Bacteria 7981
187 Ga0496100_0071480 3300048903 Bacteria 2317
188 Ga0496109_0057121 3300048912 Bacteria 3561
189 Ga0501031_0001561 3300049568 Bacteria 14260
190 Ga0501031_0063703 3300049568 Bacteria 2401
191 Ga0501032_0005447 3300049569 Bacteria 9447
192 Ga0501032_0076782 3300049569 Bacteria 2224
193 Ga0501033_0001832 3300049570 Bacteria 18521
194 Ga0501033_0010931 3300049570 Bacteria 6958
195 Ga0501033_0091870 3300049570 Bacteria 2220
196 Ga0501034_0054850 3300049571 Bacteria 4011
197 Ga0501034_0207995 3300049571 Bacteria 1912
198 Ga0501036_0010350 3300049572 Bacteria 7699
199 Ga0501037_0008716 3300049573 Bacteria 7435
200 Ga0501037_0025535 3300049573 Bacteria 4364
201 Ga0501037_0054371 3300049573 Bacteria 2927
202 Ga0501038_0002914 3300049574 Bacteria 15944
203 Ga0501038_0020593 3300049574 Bacteria 5927
204 Ga0501038_0048617 3300049574 Bacteria 3669
205 Ga0501039_0043231 3300049575 Bacteria 3481
206 Ga0501043_0002076 3300049579 Bacteria 17088
207 Ga0501043_0056313 3300049579 Bacteria 3088
208 Ga0501043_0074131 3300049579 Bacteria 2673
209 Ga0501046_0019147 3300049580 Bacteria 5679
210 Ga0501046_0055502 3300049580 Bacteria 3112
211 Ga0501047_0011996 3300049581 Bacteria 8199
212 Ga0501047_0013338 3300049581 Bacteria 7786
213 Ga0501047_0067115 3300049581 Bacteria 3457
214 Ga0501047_0096331 3300049581 Bacteria 2837
215 Ga0501048_0002134 3300049582 Bacteria 15067
216 Ga0501048_0046131 3300049582 Bacteria 3111
217 Ga0501067_0003956 3300049583 Bacteria 8182
218 Ga0501070_0036432 3300049586 Bacteria 4107
219 Ga0501071_0003705 3300049587 Bacteria 9593
220 Ga0501073_0010111 3300049589 Bacteria 6935
221 Ga0501074_0004164 3300049590 Bacteria 10327
222 Ga0501076_0043772 3300049592 Bacteria 3529
223 Ga0501077_0081083 3300049593 Bacteria 2055
224 Ga0501080_0034626 3300049742 Bacteria 4716
225 Ga0501035_0000312 3300049822 Bacteria 56363
226 Ga0501035_0004653 3300049822 Bacteria 13022
227 Ga0501035_0050741 3300049822 Bacteria 3717
228 Ga0501035_0066799 3300049822 Bacteria 3191
229 Ga0501035_0207101 3300049822 Bacteria 1679
230 Ga0501044_0003377 3300049823 Bacteria 17996
231 Ga0501044_0011554 3300049823 Bacteria 9568
232 Ga0501044_0076817 3300049823 Bacteria 3388
233 Ga0501044_0077036 3300049823 Bacteria 3382
234 Ga0501044_0116207 3300049823 Unclassified 2681
235 Ga0501045_0006888 3300049824 Bacteria 7878
236 nmdc:mga0k408_16352_c1 3300050493 Bacteria 4116
237 nmdc:mga06z11_25887_c1 3300050494 Bacteria 2786
238 nmdc:mga05p37_5750_c1 3300050507 Bacteria 14587
239 nmdc:mga0qj67_13076_c1 3300050509 Bacteria 6269
240 nmdc:mga06r32_28447_c1 3300050510 Bacteria 5230
241 Ga0495601_0003157 3300053077 Bacteria 9438
242 Ga0500635_0000065 3300053080 Bacteria 69362
243 Ga0495619_0004431 3300053085 Bacteria 8956
244 Ga0500560_001390 3300053107 Bacteria 4175
245 Ga0500573_0036426 3300053140 Bacteria 2841
246 Ga0500636_0011349 3300053177 Bacteria 5214
247 Ga0500587_003304 3300053739 Bacteria 2263
248 Ga0501084_0000444 3300054114 Bacteria 31944
249 Ga0501082_0034323 3300060353 Bacteria 4375
250 Ga0466962_0014574 3300061719 Bacteria 3789
251 2997455240 2997451912 Bacteria 8492419
252 2552113317 2551306166 Bacteria 9731570
253 2554260487 2554235005 Bacteria 6457341
254 2585300752 2582581312 Bacteria 7308206
255 2616905646 2616644941 Bacteria 8510691
256 2643761329 2643221548 Bacteria 8053412
257 2643901691 2643221578 Bacteria 9213798
258 2643946078 2643221587 Bacteria 7586415
259 2643977111 2643221593 Bacteria 6296053
260 2644017641 2643221601 Bacteria 7493239
261 2644173399 2643221631 Bacteria 8168043
262 2644212301 2643221638 Bacteria 6579467
263 2644387852 2643221670 Bacteria 6497041
264 2644407837 2643221673 Bacteria 9196637
265 2644432867 2643221677 Bacteria 7584031
266 2644443513 2643221678 Bacteria 9540101
267 2644459269 2643221682 Bacteria 6743283
268 2644631804 2643221714 Bacteria 9015452
269 2671837879 2671180195 Bacteria 9757215
270 2676201954 2675902999 Bacteria 9438463
271 2689994012 2687453743 Bacteria 8361025
272 2738889898 2738541308 Bacteria 7020677
273 2739237614 2738543011 Bacteria 5731169
274 2748017844 2747842501 Bacteria 5293829
275 2768647991 2767802112 Bacteria 6465194
276 2774846530 2773857921 Bacteria 9435764
277 2774856035 2773857922 Bacteria 9757215
278 2785339143 2784746763 Bacteria 9783172
279 2808846014 2808606359 Bacteria 9866990
280 2812477054 2811994917 Bacteria 7761064
281 2819696207 2818991463 Bacteria 7948711
282 2819744339 2818991472 Bacteria 10089953
283 2855686710 2855683550 Bacteria 7134265
284 2858908349 2858902515 Bacteria 7086037
285 2862707601 2862705112 Bacteria 6563286
286 2863410778 2863404153 Bacteria 9672205
287 2867314289 2867312974 Bacteria 7058875
288 2867321593 2867319477 Bacteria 7069771
289 2867432206 2867428634 Bacteria 9590268
290 2873315841 2873314349 Bacteria 8512634
291 2875397916 2875391855 Bacteria 7600475
292 2889305027 2889300758 Bacteria 5690814
293 2891400435 2891395885 Bacteria 9251614
294 2895435054 2895427314 Bacteria 13147766
295 2912727260 2912723979 Bacteria 8557534
296 2912764102 2912757875 Bacteria 7940295
297 2918507691 2918501144 Bacteria 8668083
298 2919474610 2919468124 Bacteria 9133025
299 2920111273 2920107658 Bacteria 10042636
300 2939746375 2939743619 Bacteria 5762299
301 2946046577 2946045630 Bacteria 8527308
302 2946079693 2946072368 Bacteria 8999607
303 2966599554 2966598605 Bacteria 7676064
304 2990044649 2990044586 Bacteria 6603797
305 2990066884 2990059506 Bacteria 9321252
306 3006326616 3006321560 Bacteria 8247479
307 3006486861 3006486233 Bacteria 8157040
308 8002783178 8002775197 Bacteria 10728764
309 8003860686 8003856774 Bacteria 7675274
310 8008489786 8008485437 Bacteria 7198341
311 8008564828 8008558824 Bacteria 10610750
312 8025528638 8025524527 Bacteria 7197316
313 8025535288 8025530807 Bacteria 8495698
314 8048407560 8048406513 Bacteria 8936924
315 JGI24751J29686_10000111
316 rootH1_10021813
317 rootH2_10007644
318 rootL2_10044268
319 rootH1_10004284
320 rootH1_10112460
321 Ga0055526_1005034
322 Ga0055537_1002971
323 Ga0055524_1003477
324 Ga0055530_10003462
325 Ga0055530_10007193
326 Ga0055531_10026270
327 Ga0070670_100000216
328 Ga0070689_100001915
329 Ga0070689_100009127
330 Ga0070688_100011651
331 Ga0070688_100067125
332 Ga0070713_100243054
333 Ga0070664_100098372
334 Ga0068859_100000134
335 Ga0068859_100062642
336 Ga0068864_100131991
337 Ga0068863_100079014
338 Ga0081455_10002554
339 Ga0075365_10108200
340 Ga0075367_10027000
341 Ga0075366_10025121
342 Ga0075430_100009960
343 Ga0075431_100167474
344 Ga0075431_100200027
345 Ga0075429_100005414
346 Ga0075429_100050745
347 Ga0097620_100000134
348 Ga0097620_100062642
349 Ga0105240_10091548
350 Ga0111539_10057645
351 Ga0114129_10024810
352 Ga0105243_10002237
353 Ga0163163_10000040
354 Ga0163163_10000250
355 Ga0182006_1016020
356 Ga0207427_101348
357 Ga0209677_102581
358 Ga0209565_1001402
359 Ga0209565_1001596
360 Ga0209675_1003915
361 Ga0209564_1000272
362 Ga0209758_1030968
363 Ga0209050_1000164
364 Ga0209050_1001824
365 Ga0209256_1000427
366 Ga0207426_1011071
367 Ga0209257_1011628
368 Ga0207705_10173020
369 Ga0207695_10098759
370 Ga0207646_10060959
371 Ga0207646_10211185
372 Ga0207650_10000269
373 Ga0207709_10004753
374 Ga0207670_10002606
375 Ga0207668_10001389
376 Ga0207674_10331616
377 Ga0207428_10023550
378 Ga0268266_10165548
379 Ga0307517_10013107
380 Ga0307515_10000055
381 Ga0307515_10004522
382 Ga0307515_10026497
383 Ga0265327_10009613
384 Ga0307513_10010869
385 Ga0307509_10043635
386 Ga0307408_100000146
387 Ga0307408_100001328
388 Ga0307514_10135077
389 Ga0307410_10087498
390 Ga0307415_100037513
391 Ga0307507_10008532
392 Ga0307510_10036223
393 Ga0307510_10046501
394 Ga0373934_0015534
395 Ga0373927_0002939
396 Ga0373925_0000251
397 Ga0400484_07574
398 Ga0400490_32794
399 Ga0400488_18743
400 Ga0400483_066858
401 Ga0400487_18560
402 Ga0439439_0009356
403 Ga0451853_0422012
404 Ga0451853_1987783
405 Ga0439433_0018191
406 Ga0439449_0000416
407 Ga0439449_0016208
408 Ga0439457_002107
409 Ga0450894_000648
410 Ga0450896_001123
411 Ga0450898_000744
412 Ga0450899_001276
413 Ga0450899_004082
414 Ga0450906_003557
415 Ga0466972_0004258
416 Ga0466972_0016630
417 Ga0466965_0004788
418 Ga0466966_0003079
419 Ga0466961_0022589
420 Ga0466963_0005798
421 Ga0466964_0012988
422 Ga0466971_0000089
423 Ga0466968_0000754
424 Ga0466970_0010067
425 Ga0466957_0096985
426 Ga0466957_0131046
427 Ga0466960_0016893
428 Ga0466959_0000748
429 Ga0466959_0003518
430 Ga0466958_0046920
431 Ga0466967_0000502
432 Ga0495592_0001862
433 Ga0495603_0014266
434 Ga0495629_0002320
435 Ga0495629_0002656
436 Ga0495629_0007282
437 Ga0495651_0006752
438 Ga0495653_0015082
439 Ga0495580_0004031
440 Ga0495662_0000234
441 Ga0495664_0001082
442 Ga0495664_0106249
443 Ga0495594_0001000
444 Ga0495594_0030037
445 Ga0495594_0072665
446 Ga0495607_0000252
447 Ga0495608_0000914
448 Ga0495610_0045100
449 Ga0495628_0002367
450 Ga0495628_0190548
451 Ga0495630_0019302
452 Ga0495632_0006184
453 Ga0495643_0043590
454 Ga0495652_0005044
455 Ga0495665_0004633
456 Ga0495640_0003811
457 Ga0495586_0001900
458 Ga0495587_0001445
459 Ga0495645_0013840
460 Ga0495622_0010446
461 Ga0495667_0044009
462 Ga0495656_0036748
463 Ga0495634_0006710
464 Ga0495634_0032781
465 Ga0495625_0016819
466 Ga0495635_0007668
467 Ga0495588_0008390
468 Ga0495657_0032878
469 Ga0495623_0019709
470 Ga0495646_0009379
471 Ga0495613_0004039
472 Ga0495613_0035248
473 Ga0495613_0060508
474 Ga0495624_0090232
475 Ga0495671_0008670
476 Ga0495589_0078862
477 Ga0495600_0003386
478 Ga0495600_0028707
479 Ga0495581_0017189
480 Ga0495581_0018303
481 Ga0495604_0000225
482 Ga0495604_0002030
483 Ga0495604_0008576
484 Ga0495636_0000822
485 Ga0495674_0019282
486 Ga0495676_0015396
487 Ga0495676_0022470
488 Ga0495676_0031043
489 Ga0495687_004171
490 Ga0495675_0001373
491 Ga0495675_0007685
492 Ga0495675_0009278
493 Ga0495675_0065619
494 Ga0495685_010269
495 Ga0495681_0002176
496 Ga0495684_0008023
497 Ga0495686_0066810
498 Ga0495602_0008697
499 Ga0495614_0002630
500 Ga0496100_0071480
501 Ga0496109_0057121
502 Ga0501031_0001561
503 Ga0501031_0063703
504 Ga0501032_0005447
505 Ga0501032_0076782
506 Ga0501033_0001832
507 Ga0501033_0010931
508 Ga0501033_0091870
509 Ga0501034_0054850
510 Ga0501034_0207995
511 Ga0501036_0010350
512 Ga0501037_0008716
513 Ga0501037_0025535
514 Ga0501037_0054371
515 Ga0501038_0002914
516 Ga0501038_0020593
517 Ga0501038_0048617
518 Ga0501039_0043231
519 Ga0501043_0002076
520 Ga0501043_0056313
521 Ga0501043_0074131
522 Ga0501046_0019147
523 Ga0501046_0055502
524 Ga0501047_0011996
525 Ga0501047_0013338
526 Ga0501047_0067115
527 Ga0501047_0096331
528 Ga0501048_0002134
529 Ga0501048_0046131
530 Ga0501067_0003956
531 Ga0501070_0036432
532 Ga0501071_0003705
533 Ga0501073_0010111
534 Ga0501074_0004164
535 Ga0501076_0043772
536 Ga0501077_0081083
537 Ga0501080_0034626
538 Ga0501035_0000312
539 Ga0501035_0004653
540 Ga0501035_0050741
541 Ga0501035_0066799
542 Ga0501035_0207101
543 Ga0501044_0003377
544 Ga0501044_0011554
545 Ga0501044_0076817
546 Ga0501044_0077036
547 Ga0501044_0116207
548 Ga0501045_0006888
549 nmdc:mga0k408_16352_c1
550 nmdc:mga06z11_25887_c1
551 nmdc:mga05p37_5750_c1
552 nmdc:mga0qj67_13076_c1
553 nmdc:mga06r32_28447_c1
554 Ga0495601_0003157
555 Ga0500635_0000065
556 Ga0495619_0004431
557 Ga0500560_001390
558 Ga0500573_0036426
559 Ga0500636_0011349
560 Ga0500587_003304
561 Ga0501084_0000444
562 Ga0501082_0034323
563 Ga0466962_0014574
564 2997455240
565 2552113317
566 2554260487
567 2585300752
568 2616905646
569 2643761329
570 2643901691
571 2643946078
572 2643977111
573 2644017641
574 2644173399
575 2644212301
576 2644387852
577 2644407837
578 2644432867
579 2644443513
580 2644459269
581 2644631804
582 2671837879
583 2676201954
584 2689994012
585 2738889898
586 2739237614
587 2748017844
588 2768647991
589 2774846530
590 2774856035
591 2785339143
592 2808846014
593 2812477054
594 2819696207
595 2819744339
596 2855686710
597 2858908349
598 2862707601
599 2863410778
600 2867314289
601 2867321593
602 2867432206
603 2873315841
604 2875397916
605 2889305027
606 2891400435
607 2895435054
608 2912727260
609 2912764102
610 2918507691
611 2919474610
612 2920111273
613 2939746375
614 2946046577
615 2946079693
616 2966599554
617 2990044649
618 2990066884
619 3006326616
620 3006486861
621 8002783178
622 8003860686
623 8008489786
624 8008564828
625 8025528638
626 8025535288
627 8048407560

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04055

Radical_SAM

Radical SAM superfamily

89

264

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
1olt-assembly1.cif.gz_A coproporphyrinogen iii oxidase (hemn) from escherichia coli is a radical sam enzyme. 0.8496 16 423
1olt-assembly1.cif.gz_A coproporphyrinogen iii oxidase (hemn) from escherichia coli is a radical sam enzyme. 0.8015 16 423
6fd2-assembly1.cif.gz_B radical sam 1,2-diol dehydratase aprd4 in complex with its substrate paromamine 0.6983 83 273
6efn-assembly1.cif.gz_A-2 structure of a ripp maturase, skfb 0.6926 42 270
4jc0-assembly2.cif.gz_B crystal structure of thermotoga maritima holo rimo in complex with pentasulfide, northeast structural genomics consortium target vr77 0.6879 50 269
ID Description Score Start End Superfamily
af_Q2FXY9_7_216_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.9141 50 244 3.80.30.20
af_Q2FXY9_297_360_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.914 351 412 1.10.10.10
af_P32131_50_279_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8877 46 269 3.20.20.70
af_A0A1D6JM25_181_293_3.30.750.200 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA; 0.8835 164 266 3.30.750.200
af_A4IGH2_157_284_3.30.750.200 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA; 0.8779 164 284 3.30.750.200
ID Description Score Start End GO Terms
AF-A0A0Q8ZGB0-F1-model_v4 Coproporphyrinogen III oxidase 0.975 11 438 GO:0003824
GO:0005737
GO:0006779
GO:0046872
GO:0051539
AF-C4RCQ7-F1-model_v4 Coproporphyrinogen III oxidase 0.9678 1 382 GO:0003824
GO:0005737
GO:0006779
GO:0051539
AF-A0A6M0S6B7-F1-model_v4 Coproporphyrinogen III oxidase family protein 0.9666 7 438 GO:0003824
GO:0005737
GO:0006779
GO:0051539
AF-A0A841WYK9-F1-model_v4 HemN C-terminal domain-containing protein 0.9619 301 438
AF-A0A1Y5GZM6-F1-model_v4 Radical SAM core domain-containing protein 0.9565 1 438 GO:0003824
GO:0005737
GO:0006779
GO:0051539

Map