F399152

General Info

Members Datasets Scaffolds Average Seq Length
307 172 614 168

Family's Representative Sequence

Representative Sequence 3300006881|Ga0068865_100870865|Ga0068865_1008708651
Length 190
Sequence VGLCPLFLFVGTRFTPLFVVTQNRAEQLAGVRAAAERVARGYGLEIFDVQLRREAIGTVLRVIIDRPDRGVPETFDDAVGIEECQRVSHDLSALLDVEDEELEAAGALAQNYTLEVSSPGLDRPLRHEADYRRFAGRLAKVVTNAPIGGQSAFSGRILAVERGELILEEGRKRHKVPVAQIKRGHLAVEF

Samples

Sample ID Description Type Environment
1 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
2 3300001991 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 Metagenome Rhizosphere
3 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
19 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
20 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
21 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
22 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
23 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
24 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
25 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
26 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
27 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
28 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
29 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
30 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
31 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
32 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
33 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
34 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
35 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
36 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
40 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
41 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
42 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
43 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
44 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
53 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
54 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
78 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
79 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
82 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
83 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
84 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
85 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
86 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
87 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
88 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
89 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
90 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
91 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
92 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
93 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
94 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
95 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
96 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
97 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
98 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
99 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
100 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
101 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
102 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
103 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
104 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
105 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
106 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
107 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
108 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
109 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
110 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
111 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
112 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
113 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
114 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
115 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
116 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
117 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
118 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
119 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
120 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
121 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
122 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
123 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
124 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
127 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
137 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
138 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
139 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
140 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
141 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
142 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
143 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
144 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
145 3300049651 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_A_0_drought Metagenome Rhizosphere
146 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
147 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
148 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
149 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
150 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
151 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
152 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
153 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
154 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
155 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
156 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
157 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
158 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
159 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
160 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
161 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
162 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
163 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
164 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
165 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
166 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
167 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
168 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
169 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
170 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
171 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
172 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.02
Metatranscriptomes 0.98
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.84
Nodule 0
Rhizoplane 7.49
Rhizosphere 84.69
Stem 0
Stem Tuber 0
Unclassified 17.92

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068865_100870865 3300006881 Unclassified 781
2 JGI24743J22301_10049397 3300001991 Bacteria 855
3 Ga0058863_11871092 3300004799 Unclassified 1297
4 Ga0065715_10205355 3300005293 Bacteria 1335
5 Ga0065715_10460183 3300005293 Unclassified 817
6 Ga0070683_100200285 3300005329 Bacteria 1896
7 Ga0070683_100606950 3300005329 Unclassified 1047
8 Ga0070677_10314342 3300005333 Unclassified 800
9 Ga0070677_10329075 3300005333 Unclassified 785
10 Ga0070666_10348282 3300005335 Bacteria 1060
11 Ga0070680_100081078 3300005336 Bacteria 2677
12 Ga0070682_100427883 3300005337 Bacteria 1008
13 Ga0070689_100366410 3300005340 Bacteria 1212
14 Ga0070668_100110136 3300005347 Bacteria 2191
15 Ga0070668_100139771 3300005347 Bacteria 1951
16 Ga0070668_101079330 3300005347 Archaea 724
17 Ga0070675_100134158 3300005354 Bacteria 2112
18 Ga0070675_100708173 3300005354 Bacteria 917
19 Ga0070675_100840635 3300005354 Unclassified 840
20 Ga0070671_100461738 3300005355 Unclassified 1090
21 Ga0070671_100464430 3300005355 Bacteria 1087
22 Ga0070674_100002806 3300005356 Bacteria 9633
23 Ga0070674_100021385 3300005356 Bacteria 4152
24 Ga0070674_100072516 3300005356 Bacteria 2438
25 Ga0070673_100581690 3300005364 Bacteria 1020
26 Ga0070688_100220224 3300005365 Bacteria 1337
27 Ga0070667_100344800 3300005367 Bacteria 1347
28 Ga0070694_101571199 3300005444 Unclassified 558
29 Ga0070708_100428265 3300005445 Bacteria 1248
30 Ga0070663_100510058 3300005455 Bacteria 1000
31 Ga0070678_100384468 3300005456 Bacteria 1215
32 Ga0070678_100521122 3300005456 Unclassified 1052
33 Ga0070662_100283715 3300005457 Bacteria 1341
34 Ga0070698_100202206 3300005471 Bacteria 1922
35 Ga0070699_100055688 3300005518 Bacteria 3424
36 Ga0070699_100629694 3300005518 Unclassified 979
37 Ga0070684_100367101 3300005535 Bacteria 1325
38 Ga0070672_100188603 3300005543 Bacteria 1721
39 Ga0070665_100368339 3300005548 Bacteria 1443
40 Ga0070665_100547063 3300005548 Unclassified 1170
41 Ga0070664_100133591 3300005564 Bacteria 2181
42 Ga0070664_100357480 3300005564 Bacteria 1330
43 Ga0068854_100265025 3300005578 Bacteria 1377
44 Ga0068870_10416716 3300005840 Bacteria 878
45 Ga0068863_100334018 3300005841 Unclassified 1473
46 Ga0075368_10012126 3300006042 Bacteria 3148
47 Ga0075368_10104020 3300006042 Bacteria 1168
48 Ga0075364_10001932 3300006051 Bacteria 11536
49 Ga0075362_10000360 3300006177 Bacteria 13107
50 Ga0075367_10004483 3300006178 Bacteria 6825
51 Ga0075367_10005133 3300006178 Bacteria 6467
52 Ga0075366_10012454 3300006195 Bacteria 4825
53 Ga0075366_10013340 3300006195 Bacteria 4676
54 Ga0075370_10055605 3300006353 Bacteria 2249
55 Ga0075428_100055467 3300006844 Bacteria 4341
56 Ga0075428_100092486 3300006844 Bacteria 3297
57 Ga0075428_100395193 3300006844 Unclassified 1482
58 Ga0075428_100586130 3300006844 Bacteria 1191
59 Ga0075430_100000059 3300006846 Bacteria 58299
60 Ga0075430_100001570 3300006846 Bacteria 18687
61 Ga0075430_100008100 3300006846 Bacteria 8883
62 Ga0075430_100324966 3300006846 Bacteria 1271
63 Ga0075431_100033067 3300006847 Bacteria 5329
64 Ga0075431_100102113 3300006847 Bacteria 2959
65 Ga0075431_100131989 3300006847 Bacteria 2576
66 Ga0075431_100141421 3300006847 Bacteria 2481
67 Ga0075431_100351594 3300006847 Bacteria 1481
68 Ga0075431_100618821 3300006847 Bacteria 1065
69 Ga0075433_10000845 3300006852 Bacteria 21490
70 Ga0075434_100011724 3300006871 Bacteria 8279
71 Ga0075429_100057170 3300006880 Bacteria 3396
72 Ga0075429_100154860 3300006880 Bacteria 2007
73 Ga0075435_100025850 3300007076 Bacteria 4575
74 Ga0075435_100197942 3300007076 Bacteria 1702
75 Ga0111539_10000523 3300009094 Bacteria 48534
76 Ga0111539_10247414 3300009094 Bacteria 2076
77 Ga0114129_10006887 3300009147 Bacteria 16163
78 Ga0114129_10007258 3300009147 Bacteria 15778
79 Ga0114129_10025385 3300009147 Bacteria 8395
80 Ga0114129_10050055 3300009147 Bacteria 5870
81 Ga0114129_10220330 3300009147 Bacteria 2560
82 Ga0114129_10393052 3300009147 Bacteria 1829
83 Ga0114129_11019041 3300009147 Unclassified 1041
84 Ga0114129_11501912 3300009147 Bacteria 828
85 Ga0157374_11195240 3300013296 Bacteria 782
86 Ga0157372_10770394 3300013307 Unclassified 1118
87 Ga0157375_10399747 3300013308 Bacteria 1541
88 Ga0163163_10055036 3300014325 Bacteria 3932
89 Ga0157380_11584481 3300014326 Unclassified 710
90 Ga0206356_11200525 3300020070 Bacteria 910
91 Ga0224712_10309176 3300022467 Unclassified 741
92 Ga0207697_10006690 3300025315 Bacteria 5194
93 Ga0207697_10152732 3300025315 Bacteria 1005
94 Ga0207642_10105994 3300025899 Bacteria 1421
95 Ga0207688_10031974 3300025901 Bacteria 2907
96 Ga0207688_10117043 3300025901 Unclassified 1552
97 Ga0207680_10290842 3300025903 Bacteria 1137
98 Ga0207681_10568427 3300025923 Unclassified 934
99 Ga0207650_10259942 3300025925 Bacteria 1408
100 Ga0207659_10322118 3300025926 Bacteria 1275
101 Ga0207659_10568663 3300025926 Bacteria 965
102 Ga0207644_10042194 3300025931 Bacteria 3232
103 Ga0207690_10503680 3300025932 Bacteria 980
104 Ga0207706_10199857 3300025933 Bacteria 1753
105 Ga0207669_10011631 3300025937 Bacteria 4291
106 Ga0207669_10012690 3300025937 Bacteria 4152
107 Ga0207669_10059424 3300025937 Bacteria 2338
108 Ga0207691_10155390 3300025940 Bacteria 2009
109 Ga0207679_10257548 3300025945 Bacteria 1486
110 Ga0207679_10369239 3300025945 Bacteria 1255
111 Ga0207651_10507874 3300025960 Bacteria 1043
112 Ga0207668_10210096 3300025972 Bacteria 1556
113 Ga0207668_10237079 3300025972 Bacteria 1474
114 Ga0207668_10694615 3300025972 Unclassified 894
115 Ga0207640_10530408 3300025981 Bacteria 986
116 Ga0207658_10346381 3300025986 Bacteria 1293
117 Ga0207678_10221495 3300026067 Bacteria 1620
118 Ga0207678_10272446 3300026067 Bacteria 1452
119 Ga0207648_11325794 3300026089 Archaea 676
120 Ga0207676_10400323 3300026095 Bacteria 1283
121 Ga0207675_100821523 3300026118 Bacteria 943
122 Ga0207683_10140823 3300026121 Bacteria 2173
123 Ga0207683_10142160 3300026121 Bacteria 2163
124 Ga0207698_10077108 3300026142 Bacteria 2671
125 Ga0207698_10949867 3300026142 Unclassified 869
126 Ga0209813_10004694 3300027866 Bacteria 3275
127 Ga0207428_10000600 3300027907 Bacteria 42629
128 Ga0207428_10034231 3300027907 Bacteria 4165
129 Ga0268266_10179293 3300028379 Bacteria 1928
130 Ga0268265_10949598 3300028380 Unclassified 847
131 Ga0307408_100070708 3300031548 Bacteria 2577
132 Ga0307408_100347765 3300031548 Bacteria 1257
133 Ga0307408_100831218 3300031548 Unclassified 840
134 Ga0307408_101642741 3300031548 Bacteria 611
135 Ga0307405_10139433 3300031731 Bacteria 1688
136 Ga0307405_10164445 3300031731 Bacteria 1576
137 Ga0307410_10219390 3300031852 Bacteria 1462
138 Ga0307406_10109719 3300031901 Bacteria 1897
139 Ga0307406_10191228 3300031901 Bacteria 1498
140 Ga0307407_10007218 3300031903 Bacteria 5017
141 Ga0307412_10535150 3300031911 Unclassified 981
142 Ga0307409_100024771 3300031995 Bacteria 4193
143 Ga0307409_100373452 3300031995 Bacteria 1353
144 Ga0307409_100850455 3300031995 Unclassified 923
145 Ga0307409_101500827 3300031995 Bacteria 701
146 Ga0307416_100024328 3300032002 Bacteria 4418
147 Ga0307416_100128804 3300032002 Bacteria 2273
148 Ga0307416_100578060 3300032002 Bacteria 1200
149 Ga0307416_101286489 3300032002 Unclassified 837
150 Ga0307416_101424444 3300032002 Bacteria 799
151 Ga0307415_100105739 3300032126 Bacteria 2076
152 Ga0307415_100803231 3300032126 Bacteria 859
153 Ga0373924_0242328 3300035410 Bacteria 798
154 Ga0395905_0554071 3300037471 Bacteria 1051
155 Ga0395901_0925368 3300038443 Unclassified 852
156 Ga0439461_0037304 3300041410 Bacteria 1038
157 Ga0451833_1215036 3300041491 Bacteria 702
158 Ga0451851_0639433 3300041507 Bacteria 612
159 Ga0451853_4014742 3300041512 Bacteria 641
160 Ga0439462_0031123 3300042015 Bacteria 1412
161 Ga0439434_0231793 3300042435 Bacteria 628
162 Ga0439435_0244659 3300042436 Unclassified 602
163 Ga0451576_0875985 3300045051 Unclassified 942
164 Ga0495603_0263217 3300046455 Unclassified 992
165 Ga0495629_0305570 3300046459 Bacteria 1089
166 Ga0495594_0323049 3300046499 Unclassified 879
167 Ga0495608_0915701 3300046511 Bacteria 513
168 Ga0495622_0454383 3300046557 Unclassified 549
169 Ga0495647_0308956 3300046681 Bacteria 714
170 Ga0495613_0299976 3300046689 Bacteria 1112
171 Ga0495589_0140892 3300046794 Bacteria 1155
172 Ga0496100_0041147 3300048903 Bacteria 2944
173 Ga0496100_0623370 3300048903 Unclassified 839
174 Ga0496101_0703859 3300048904 Unclassified 797
175 Ga0496101_0717679 3300048904 Bacteria 789
176 Ga0496101_1204195 3300048904 Bacteria 593
177 Ga0496102_0214662 3300048905 Bacteria 1813
178 Ga0496102_0290291 3300048905 Bacteria 1542
179 Ga0496102_0973858 3300048905 Bacteria 769
180 Ga0496102_1049640 3300048905 Bacteria 735
181 Ga0496102_1171930 3300048905 Bacteria 688
182 Ga0496103_0326692 3300048906 Bacteria 986
183 Ga0496104_0548089 3300048907 Bacteria 1067
184 Ga0496104_0658675 3300048907 Unclassified 956
185 Ga0496105_0357608 3300048908 Bacteria 1165
186 Ga0496105_0809055 3300048908 Bacteria 712
187 Ga0496106_0056369 3300048909 Bacteria 2970
188 Ga0496107_0080523 3300048910 Bacteria 2375
189 Ga0496108_0147296 3300048911 Bacteria 2030
190 Ga0496109_0561725 3300048912 Bacteria 1076
191 Ga0496110_0156419 3300048913 Bacteria 2065
192 Ga0496111_0571394 3300048914 Bacteria 829
193 Ga0496114_0810639 3300048917 Bacteria 815
194 Ga0496114_1033919 3300048917 Unclassified 705
195 Ga0501299_058810 3300049522 Bacteria 810
196 Ga0501033_0203927 3300049570 Bacteria 1412
197 Ga0501034_0159728 3300049571 Bacteria 2226
198 Ga0501036_0028750 3300049572 Bacteria 4698
199 Ga0501036_0519365 3300049572 Unclassified 990
200 Ga0501037_0792394 3300049573 Bacteria 626
201 Ga0501038_0580630 3300049574 Bacteria 850
202 Ga0501039_0045398 3300049575 Bacteria 3395
203 Ga0501039_0397373 3300049575 Unclassified 1083
204 Ga0501040_0088895 3300049576 Bacteria 2146
205 Ga0501041_0088001 3300049577 Bacteria 1917
206 Ga0501041_0200739 3300049577 Bacteria 1250
207 Ga0501041_0266501 3300049577 Unclassified 1077
208 Ga0501042_0032854 3300049578 Bacteria 3676
209 Ga0501042_0135719 3300049578 Bacteria 1774
210 Ga0501043_0476645 3300049579 Bacteria 935
211 Ga0501046_0303274 3300049580 Bacteria 1166
212 Ga0501046_0411280 3300049580 Unclassified 976
213 Ga0501046_0469792 3300049580 Unclassified 903
214 Ga0501047_0264719 3300049581 Bacteria 1566
215 Ga0501048_0066628 3300049582 Bacteria 2546
216 Ga0501048_0178720 3300049582 Unclassified 1504
217 Ga0501068_0273678 3300049584 Unclassified 1078
218 Ga0501070_0567794 3300049586 Bacteria 907
219 Ga0501071_0008486 3300049587 Bacteria 6796
220 Ga0501071_0218476 3300049587 Unclassified 1434
221 Ga0501071_0469956 3300049587 Bacteria 963
222 Ga0501072_0022299 3300049588 Bacteria 4913
223 Ga0501072_0029059 3300049588 Bacteria 4316
224 Ga0501072_0226365 3300049588 Unclassified 1490
225 Ga0501073_0101008 3300049589 Bacteria 2003
226 Ga0501074_0070809 3300049590 Bacteria 2507
227 Ga0501074_0430398 3300049590 Bacteria 936
228 Ga0501074_0598037 3300049590 Unclassified 780
229 Ga0501075_0094619 3300049591 Bacteria 2268
230 Ga0501075_0350351 3300049591 Bacteria 1125
231 Ga0501075_0587631 3300049591 Unclassified 849
232 Ga0501075_0847381 3300049591 Unclassified 695
233 Ga0501076_0030511 3300049592 Bacteria 4199
234 Ga0501076_0123189 3300049592 Bacteria 2100
235 Ga0501077_0046211 3300049593 Bacteria 2767
236 Ga0501077_0183477 3300049593 Bacteria 1330
237 Ga0501201_019961 3300049651 Unclassified 705
238 Ga0501079_0083685 3300049741 Bacteria 2468
239 Ga0501079_0134200 3300049741 Bacteria 1927
240 Ga0501079_0153448 3300049741 Bacteria 1795
241 Ga0501080_0493214 3300049742 Bacteria 1095
242 Ga0501080_0593256 3300049742 Bacteria 984
243 Ga0501081_0022209 3300049743 Bacteria 4244
244 Ga0501081_0051346 3300049743 Bacteria 2844
245 Ga0501081_0337155 3300049743 Bacteria 1110
246 Ga0501081_0358718 3300049743 Bacteria 1075
247 Ga0501081_0378057 3300049743 Bacteria 1046
248 Ga0501083_0078255 3300049744 Bacteria 2194
249 Ga0501083_0422878 3300049744 Bacteria 867
250 Ga0501083_0613033 3300049744 Bacteria 708
251 Ga0501045_0026000 3300049824 Bacteria 4209
252 Ga0501045_0123516 3300049824 Bacteria 1922
253 nmdc:mga03683_4102_c1 3300050489 Bacteria 4789
254 nmdc:mga00v17_1054_c1 3300050491 Bacteria 14547
255 nmdc:mga0yw44_95010_c1 3300050492 Bacteria 1890
256 nmdc:mga0k408_13484_c1 3300050493 Bacteria 4484
257 nmdc:mga0k408_151841_c1 3300050493 Bacteria 1379
258 nmdc:mga0k408_8361_c1 3300050493 Bacteria 5553
259 nmdc:mga06z11_681_c1 3300050494 Bacteria 12350
260 nmdc:mga06z11_9301_c1 3300050494 Bacteria 4136
261 nmdc:mga04h51_5319_c1 3300050495 Bacteria 3274
262 nmdc:mga04h51_62824_c1 3300050495 Bacteria 1277
263 nmdc:mga07m45_237812_c1 3300050496 Bacteria 1060
264 nmdc:mga05p37_10578_c1 3300050507 Bacteria 5948
265 nmdc:mga05p37_1137322_c1 3300050507 Bacteria 814
266 nmdc:mga05p37_260953_c1 3300050507 Bacteria 2073
267 nmdc:mga05p37_2791_c1 3300050507 Bacteria 20307
268 nmdc:mga05p37_2856_c1 3300050507 Bacteria 20057
269 nmdc:mga05p37_66610_c1 3300050507 Bacteria 4430
270 nmdc:mga09592_118038_c1 3300050508 Bacteria 2277
271 nmdc:mga09592_52694_c1 3300050508 Bacteria 3434
272 nmdc:mga09592_89877_c1 3300050508 Bacteria 2624
273 nmdc:mga0qj67_25493_c1 3300050509 Bacteria 4569
274 nmdc:mga0qj67_41225_c1 3300050509 Bacteria 3630
275 nmdc:mga0qj67_60604_c1 3300050509 Bacteria 3004
276 nmdc:mga0qj67_6409_c1 3300050509 Bacteria 8648
277 nmdc:mga06r32_105882_c1 3300050510 Bacteria 2763
278 nmdc:mga06r32_199616_c1 3300050510 Bacteria 1988
279 nmdc:mga06r32_230518_c1 3300050510 Bacteria 1840
280 nmdc:mga06r32_97807_c1 3300050510 Bacteria 2877
281 nmdc:mga08y16_1035714_c1 3300050511 Bacteria 799
282 nmdc:mga08y16_2122_c1 3300050511 Bacteria 20333
283 nmdc:mga08y16_246650_c1 3300050511 Bacteria 1845
284 nmdc:mga08y16_900_c1 3300050511 Bacteria 28745
285 nmdc:mga0n895_2865_c1 3300050512 Bacteria 13673
286 nmdc:mga0rr50_107880_c1 3300050513 Bacteria 2199
287 nmdc:mga0a205_104_c1 3300050515 Bacteria 48304
288 nmdc:mga0a205_156130_c1 3300050515 Bacteria 2180
289 nmdc:mga0a205_993377_c1 3300050515 Unclassified 686
290 Ga0501084_0127564 3300054114 Bacteria 2141
291 Ga0501084_0143693 3300054114 Bacteria 2010
292 Ga0501084_0322479 3300054114 Bacteria 1305
293 Ga0501084_1012859 3300054114 Bacteria 698
294 Ga0590071_001419 3300059421 Bacteria 6346
295 Ga0590071_021809 3300059421 Bacteria 1510
296 Ga0590074_004971 3300059423 Bacteria 2196
297 Ga0590075_002878 3300059424 Bacteria 4100
298 Ga0590077_000191 3300059426 Bacteria 17585
299 Ga0590077_004120 3300059426 Bacteria 2994
300 Ga0501082_0117857 3300060353 Bacteria 2300
301 Ga0501082_0306927 3300060353 Bacteria 1382
302 Ga0501082_0310956 3300060353 Bacteria 1372
303 Ga0501082_0362587 3300060353 Bacteria 1264
304 Ga0530510_0204791 3300061734 Unclassified 1466
305 Ga0530510_0491776 3300061734 Unclassified 930
306 Ga0530510_0663383 3300061734 Unclassified 794
307 Ga0530510_1215853 3300061734 Unclassified 578
308 Ga0068865_100870865
309 JGI24743J22301_10049397
310 Ga0058863_11871092
311 Ga0065715_10205355
312 Ga0065715_10460183
313 Ga0070683_100200285
314 Ga0070683_100606950
315 Ga0070677_10314342
316 Ga0070677_10329075
317 Ga0070666_10348282
318 Ga0070680_100081078
319 Ga0070682_100427883
320 Ga0070689_100366410
321 Ga0070668_100110136
322 Ga0070668_100139771
323 Ga0070668_101079330
324 Ga0070675_100134158
325 Ga0070675_100708173
326 Ga0070675_100840635
327 Ga0070671_100461738
328 Ga0070671_100464430
329 Ga0070674_100002806
330 Ga0070674_100021385
331 Ga0070674_100072516
332 Ga0070673_100581690
333 Ga0070688_100220224
334 Ga0070667_100344800
335 Ga0070694_101571199
336 Ga0070708_100428265
337 Ga0070663_100510058
338 Ga0070678_100384468
339 Ga0070678_100521122
340 Ga0070662_100283715
341 Ga0070698_100202206
342 Ga0070699_100055688
343 Ga0070699_100629694
344 Ga0070684_100367101
345 Ga0070672_100188603
346 Ga0070665_100368339
347 Ga0070665_100547063
348 Ga0070664_100133591
349 Ga0070664_100357480
350 Ga0068854_100265025
351 Ga0068870_10416716
352 Ga0068863_100334018
353 Ga0075368_10012126
354 Ga0075368_10104020
355 Ga0075364_10001932
356 Ga0075362_10000360
357 Ga0075367_10004483
358 Ga0075367_10005133
359 Ga0075366_10012454
360 Ga0075366_10013340
361 Ga0075370_10055605
362 Ga0075428_100055467
363 Ga0075428_100092486
364 Ga0075428_100395193
365 Ga0075428_100586130
366 Ga0075430_100000059
367 Ga0075430_100001570
368 Ga0075430_100008100
369 Ga0075430_100324966
370 Ga0075431_100033067
371 Ga0075431_100102113
372 Ga0075431_100131989
373 Ga0075431_100141421
374 Ga0075431_100351594
375 Ga0075431_100618821
376 Ga0075433_10000845
377 Ga0075434_100011724
378 Ga0075429_100057170
379 Ga0075429_100154860
380 Ga0075435_100025850
381 Ga0075435_100197942
382 Ga0111539_10000523
383 Ga0111539_10247414
384 Ga0114129_10006887
385 Ga0114129_10007258
386 Ga0114129_10025385
387 Ga0114129_10050055
388 Ga0114129_10220330
389 Ga0114129_10393052
390 Ga0114129_11019041
391 Ga0114129_11501912
392 Ga0157374_11195240
393 Ga0157372_10770394
394 Ga0157375_10399747
395 Ga0163163_10055036
396 Ga0157380_11584481
397 Ga0206356_11200525
398 Ga0224712_10309176
399 Ga0207697_10006690
400 Ga0207697_10152732
401 Ga0207642_10105994
402 Ga0207688_10031974
403 Ga0207688_10117043
404 Ga0207680_10290842
405 Ga0207681_10568427
406 Ga0207650_10259942
407 Ga0207659_10322118
408 Ga0207659_10568663
409 Ga0207644_10042194
410 Ga0207690_10503680
411 Ga0207706_10199857
412 Ga0207669_10011631
413 Ga0207669_10012690
414 Ga0207669_10059424
415 Ga0207691_10155390
416 Ga0207679_10257548
417 Ga0207679_10369239
418 Ga0207651_10507874
419 Ga0207668_10210096
420 Ga0207668_10237079
421 Ga0207668_10694615
422 Ga0207640_10530408
423 Ga0207658_10346381
424 Ga0207678_10221495
425 Ga0207678_10272446
426 Ga0207648_11325794
427 Ga0207676_10400323
428 Ga0207675_100821523
429 Ga0207683_10140823
430 Ga0207683_10142160
431 Ga0207698_10077108
432 Ga0207698_10949867
433 Ga0209813_10004694
434 Ga0207428_10000600
435 Ga0207428_10034231
436 Ga0268266_10179293
437 Ga0268265_10949598
438 Ga0307408_100070708
439 Ga0307408_100347765
440 Ga0307408_100831218
441 Ga0307408_101642741
442 Ga0307405_10139433
443 Ga0307405_10164445
444 Ga0307410_10219390
445 Ga0307406_10109719
446 Ga0307406_10191228
447 Ga0307407_10007218
448 Ga0307412_10535150
449 Ga0307409_100024771
450 Ga0307409_100373452
451 Ga0307409_100850455
452 Ga0307409_101500827
453 Ga0307416_100024328
454 Ga0307416_100128804
455 Ga0307416_100578060
456 Ga0307416_101286489
457 Ga0307416_101424444
458 Ga0307415_100105739
459 Ga0307415_100803231
460 Ga0373924_0242328
461 Ga0395905_0554071
462 Ga0395901_0925368
463 Ga0439461_0037304
464 Ga0451833_1215036
465 Ga0451851_0639433
466 Ga0451853_4014742
467 Ga0439462_0031123
468 Ga0439434_0231793
469 Ga0439435_0244659
470 Ga0451576_0875985
471 Ga0495603_0263217
472 Ga0495629_0305570
473 Ga0495594_0323049
474 Ga0495608_0915701
475 Ga0495622_0454383
476 Ga0495647_0308956
477 Ga0495613_0299976
478 Ga0495589_0140892
479 Ga0496100_0041147
480 Ga0496100_0623370
481 Ga0496101_0703859
482 Ga0496101_0717679
483 Ga0496101_1204195
484 Ga0496102_0214662
485 Ga0496102_0290291
486 Ga0496102_0973858
487 Ga0496102_1049640
488 Ga0496102_1171930
489 Ga0496103_0326692
490 Ga0496104_0548089
491 Ga0496104_0658675
492 Ga0496105_0357608
493 Ga0496105_0809055
494 Ga0496106_0056369
495 Ga0496107_0080523
496 Ga0496108_0147296
497 Ga0496109_0561725
498 Ga0496110_0156419
499 Ga0496111_0571394
500 Ga0496114_0810639
501 Ga0496114_1033919
502 Ga0501299_058810
503 Ga0501033_0203927
504 Ga0501034_0159728
505 Ga0501036_0028750
506 Ga0501036_0519365
507 Ga0501037_0792394
508 Ga0501038_0580630
509 Ga0501039_0045398
510 Ga0501039_0397373
511 Ga0501040_0088895
512 Ga0501041_0088001
513 Ga0501041_0200739
514 Ga0501041_0266501
515 Ga0501042_0032854
516 Ga0501042_0135719
517 Ga0501043_0476645
518 Ga0501046_0303274
519 Ga0501046_0411280
520 Ga0501046_0469792
521 Ga0501047_0264719
522 Ga0501048_0066628
523 Ga0501048_0178720
524 Ga0501068_0273678
525 Ga0501070_0567794
526 Ga0501071_0008486
527 Ga0501071_0218476
528 Ga0501071_0469956
529 Ga0501072_0022299
530 Ga0501072_0029059
531 Ga0501072_0226365
532 Ga0501073_0101008
533 Ga0501074_0070809
534 Ga0501074_0430398
535 Ga0501074_0598037
536 Ga0501075_0094619
537 Ga0501075_0350351
538 Ga0501075_0587631
539 Ga0501075_0847381
540 Ga0501076_0030511
541 Ga0501076_0123189
542 Ga0501077_0046211
543 Ga0501077_0183477
544 Ga0501201_019961
545 Ga0501079_0083685
546 Ga0501079_0134200
547 Ga0501079_0153448
548 Ga0501080_0493214
549 Ga0501080_0593256
550 Ga0501081_0022209
551 Ga0501081_0051346
552 Ga0501081_0337155
553 Ga0501081_0358718
554 Ga0501081_0378057
555 Ga0501083_0078255
556 Ga0501083_0422878
557 Ga0501083_0613033
558 Ga0501045_0026000
559 Ga0501045_0123516
560 nmdc:mga03683_4102_c1
561 nmdc:mga00v17_1054_c1
562 nmdc:mga0yw44_95010_c1
563 nmdc:mga0k408_13484_c1
564 nmdc:mga0k408_151841_c1
565 nmdc:mga0k408_8361_c1
566 nmdc:mga06z11_681_c1
567 nmdc:mga06z11_9301_c1
568 nmdc:mga04h51_5319_c1
569 nmdc:mga04h51_62824_c1
570 nmdc:mga07m45_237812_c1
571 nmdc:mga05p37_10578_c1
572 nmdc:mga05p37_1137322_c1
573 nmdc:mga05p37_260953_c1
574 nmdc:mga05p37_2791_c1
575 nmdc:mga05p37_2856_c1
576 nmdc:mga05p37_66610_c1
577 nmdc:mga09592_118038_c1
578 nmdc:mga09592_52694_c1
579 nmdc:mga09592_89877_c1
580 nmdc:mga0qj67_25493_c1
581 nmdc:mga0qj67_41225_c1
582 nmdc:mga0qj67_60604_c1
583 nmdc:mga0qj67_6409_c1
584 nmdc:mga06r32_105882_c1
585 nmdc:mga06r32_199616_c1
586 nmdc:mga06r32_230518_c1
587 nmdc:mga06r32_97807_c1
588 nmdc:mga08y16_1035714_c1
589 nmdc:mga08y16_2122_c1
590 nmdc:mga08y16_246650_c1
591 nmdc:mga08y16_900_c1
592 nmdc:mga0n895_2865_c1
593 nmdc:mga0rr50_107880_c1
594 nmdc:mga0a205_104_c1
595 nmdc:mga0a205_156130_c1
596 nmdc:mga0a205_993377_c1
597 Ga0501084_0127564
598 Ga0501084_0143693
599 Ga0501084_0322479
600 Ga0501084_1012859
601 Ga0590071_001419
602 Ga0590071_021809
603 Ga0590074_004971
604 Ga0590075_002878
605 Ga0590077_000191
606 Ga0590077_004120
607 Ga0501082_0117857
608 Ga0501082_0306927
609 Ga0501082_0310956
610 Ga0501082_0362587
611 Ga0530510_0204791
612 Ga0530510_0491776
613 Ga0530510_0663383
614 Ga0530510_1215853

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17384

DUF150_C

RimP C-terminal SH3 domain

125

190

0.95

PF02576

RimP_N

RimP N-terminal domain

34

122

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
2x4j-assembly1.cif.gz_A crystal structure of orf137 from pyrobaculum spherical virus 0.8535 108 159
6gwk-assembly2.cif.gz_G the crystal structure of hfq from caulobacter crescentus 0.8487 110 159
4jrk-assembly1.cif.gz_B crystal structure of escherichia coli hfq surface mutant 0.8373 109 160
4y91-assembly1.cif.gz_F crystal structure of a thermotoga maritima hfq homolog 0.8354 109 162
6gwk-assembly4.cif.gz_W the crystal structure of hfq from caulobacter crescentus 0.8347 109 161
ID Description Score Start End Superfamily
af_P0A8A8_87_147_2.30.30.180 Mainly Beta;Roll;SH3 type barrels.;Ribosome maturation factor RimP, C-terminal domain 0.9474 101 160 2.30.30.180
af_Q2G2D3_1_80_3.30.300.70 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;RimP-like superfamily, N-terminal 0.9332 2 92 3.30.300.70
af_P0A8A8_87_147_2.30.30.180 Mainly Beta;Roll;SH3 type barrels.;Ribosome maturation factor RimP, C-terminal domain 0.9184 101 160 2.30.30.180
af_P0A8A8_1_79_3.30.300.70 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;RimP-like superfamily, N-terminal 0.9054 2 92 3.30.300.70
2ej9A02 Mainly Beta;Roll;SH3 type barrels.; 0.8807 109 157 2.30.30.100
ID Description Score Start End GO Terms
AF-A0A496K6Z6-F1-model_v4 deleted 0.9223 91 163
AF-A0A538MEP4-F1-model_v4 Ribosome maturation factor RimP 0.9146 4 163 GO:0000028
GO:0005829
GO:0006412
AF-A0A1F9LYH5-F1-model_v4 Ribosome maturation factor RimP 0.91 2 163 GO:0000028
GO:0005829
GO:0006412
AF-A0A1H0J8Q1-F1-model_v4 Ribosome maturation factor RimP 0.9081 2 161 GO:0000028
GO:0005829
GO:0006412
AF-A0A1G1FJG4-F1-model_v4 Ribosome maturation factor RimP 0.907 2 163 GO:0000028
GO:0005829
GO:0006412

Map