F398447

General Info

Members Datasets Scaffolds Average Seq Length
306 231 173 308

Family's Representative Sequence

Representative Sequence 3300003751|Ga0055538_1000419|Ga0055538_10004199
Length 354
Sequence MIFTLCKGSLLIVKKGYNVLKMRDSTSRIGNATVLLLVVDKYVLVREVYKGGITLTLQQLKYAIEVANRGSMNEAAKRLFISQPSLSNAIKDLEEELRITIFERTNKGISLSKEGAEFLGYARQVVEQAELLEGRYLNAKPSPQHFSVSTQHYAFAVNAFVKLVQEYGQDEYELALRETKTYEIIQDVKTLRSEIGILYLNEFNAKVINKLLKDAGLQFTSLFTARPHIFISIKNPLAKQSIVTIDELQNYPYLSFEQGEYNSFHFSEEILSTLSHKKSIRVNDRATLFNLLIGLNGYTISTGVLSADLNGNEIIPVPLACDETINVGWISHKNATLSKLAAAYVEALHEAIAT

Samples

Sample ID Description Type Environment
1 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
2 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
3 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
4 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
5 2563366752 Paenibacillus pini JCM 16418 Isolate Rhizosphere
6 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
7 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
8 2571042588 Paenibacillus zanthoxyli JH29 Isolate Unclassified
9 2576861424 Paenibacillus sabinae T27 Isolate Rhizosphere
10 2579778775 Paenibacillus durus P3L-5 Isolate Unclassified
11 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
12 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
13 2619619294 Paenibacillus durus ATCC 35681 Isolate Unclassified
14 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
15 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
16 2643221546 Microbacterium sp. Root53 Isolate Unclassified
17 2643221553 Microbacterium sp. Root553 Isolate Unclassified
18 2643221575 Microbacterium sp. Root61 Isolate Unclassified
19 2643221630 Microbacterium sp. Root322 Isolate Unclassified
20 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
21 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
22 2654587600 Glutamicibacter halophytocola KLBMP5180 Isolate Unclassified
23 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
24 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
25 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
26 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
27 2738543010 Bacillus sp. YR335 Isolate Unclassified
28 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
29 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
30 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
31 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
32 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
33 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
34 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
35 2802429420 Priestia filamentosa HL2HP6 Isolate Unclassified
36 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
37 2818991459 Paenibacillus sp. 597 Isolate Unclassified
38 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
39 2844849076 Arthrobacter cupressi DSM 24664 Isolate Rhizosphere
40 2848551377 Brachybacterium saurashtrense DSM 23186 Isolate Unclassified
41 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
42 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
43 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
44 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
45 2857472729 Cohnella sp. R-74144 Isolate Unclassified
46 2857604169 Domibacillus sp. R-71921 Isolate Unclassified
47 2857609550 Domibacillus sp. R-71929 Isolate Unclassified
48 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
49 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
50 2857740372 Paenarthrobacter sp. R-74611 Isolate Unclassified
51 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
52 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
53 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
54 2881636855 Paenibacillus sp. 7197 Isolate Rhizosphere
55 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
56 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
57 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
58 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
59 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
60 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
61 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
62 2904497146 Arthrobacter sp. 1276 Isolate Rhizosphere
63 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
64 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
65 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
66 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
67 2904765812 Rhodococcus fascians 1590 Isolate Rhizosphere
68 2904776348 Paenarthrobacter sp. 1092 Isolate Rhizosphere
69 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
70 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
71 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
72 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
73 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
74 2910809715 Paenarthrobacter sp. CM16 Isolate Unclassified
75 2919034639 Paenarthrobacter nitroguajacolicus 247 Isolate Rhizosphere
76 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
77 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
78 2919059106 Arthrobacter sp. 1088 Isolate Rhizosphere
79 2919069694 Microbacterium sp. 1154 Isolate Unclassified
80 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
81 2919420072 Rhodococcus fascians 3241 Isolate Rhizosphere
82 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
83 2919432681 Rhodococcus sp. 3258 Isolate Rhizosphere
84 2919538618 Paenarthrobacter nitroguajacolicus 3945 Isolate Unclassified
85 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
86 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
87 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
88 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
89 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
90 2932398195 Dietzia sp. 2505 Isolate Rhizosphere
91 2932426870 Paenarthrobacter sp. 4246 Isolate Rhizosphere
92 2933418574 Jeotgalibacillus campisalis 4120 Isolate Rhizosphere
93 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
94 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
95 2939615513 Lactococcus lactis 1925 Isolate Rhizosphere
96 2939647034 Arthrobacter sp. 2762 Isolate Rhizosphere
97 2939674588 Arthrobacter bambusae 3552 Isolate Rhizosphere
98 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
99 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
100 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
101 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
102 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
103 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
104 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
105 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
106 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
107 2971511577 Paenibacillus apii 7124 Isolate Rhizosphere
108 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
109 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
110 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
111 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
112 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
113 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
114 2980176882 Paenibacillus apii 7028 Isolate Rhizosphere
115 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
116 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
117 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
118 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
119 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
120 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
121 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
122 2996706504 Paenibacillus sp. OT2-17 Isolate Rhizosphere
123 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
124 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
125 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
126 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
127 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
128 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
129 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
130 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
131 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
132 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
133 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
134 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
135 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
136 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
137 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
138 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
139 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
140 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
141 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
142 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
143 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
144 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
145 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
146 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
147 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
148 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
149 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
150 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
151 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
152 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
153 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
154 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
155 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
156 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
157 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
158 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
159 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
160 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
161 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
162 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
163 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
164 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
165 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
166 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
167 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
168 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
169 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
170 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
171 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
172 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
173 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
174 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
175 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
176 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
177 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
178 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
179 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
180 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
181 3300042121 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515D_E14_082716_2398 Metagenome Rhizosphere
182 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
183 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
184 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
185 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
186 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
187 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
188 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
189 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
190 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
191 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
192 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
193 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
194 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
195 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
196 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
197 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
198 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
199 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
200 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
201 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
202 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
203 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
204 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
205 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
206 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
207 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
208 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
209 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
210 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
211 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
212 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
213 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
214 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
215 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
216 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
217 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
218 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
219 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
220 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
221 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
222 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
223 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
224 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
225 8022948649 Bacillus endophyticus FH5 Isolate Rhizosphere
226 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
227 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
228 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
229 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified
230 8057473075 Paenibacillus endoradicis T3-5-0-4 Isolate Unclassified
231 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 56.54
Metatranscriptomes 0
Isolates 43.46

Biome Distribution

Category Percentage (%)
Aerial Root 1.63
Bulb 0
Endosphere 7.84
Nodule 1.31
Rhizoplane 0.98
Rhizosphere 49.02
Stem 0
Stem Tuber 0
Unclassified 39.22

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1000140 3300002773 Bacteria 49435
2 rootH2_10076913 3300003320 Bacteria 4176
3 Ga0055538_1000419 3300003751 Bacteria 16519
4 Ga0055542_1009766 3300003762 Bacteria 1793
5 Ga0055541_1005278 3300003841 Bacteria 2267
6 Ga0065714_10018352 3300005288 Bacteria 2093
7 Ga0070667_100036449 3300005367 Bacteria 4124
8 Ga0070714_100500475 3300005435 Bacteria 1159
9 Ga0070713_100383566 3300005436 Bacteria 1310
10 Ga0070672_100043947 3300005543 Bacteria 3449
11 Ga0075364_10019827 3300006051 Bacteria 4225
12 Ga0075364_10056057 3300006051 Bacteria 2579
13 Ga0075369_10014845 3300006186 Bacteria 3117
14 Ga0079104_1003628 3300006946 Bacteria 7044
15 Ga0105244_10020730 3300009036 Bacteria 3646
16 Ga0105244_10040496 3300009036 Bacteria 2418
17 Ga0105246_10002276 3300011119 Bacteria 11577
18 Ga0105246_10077770 3300011119 Bacteria 2355
19 Ga0157370_10295488 3300013104 Bacteria 1496
20 Ga0157375_10432955 3300013308 Bacteria 1481
21 Ga0157380_10097984 3300014326 Bacteria 2435
22 Ga0209784_100072 3300025224 Bacteria 149587
23 Ga0209566_100022 3300025225 Bacteria 403259
24 Ga0209566_100156 3300025225 Bacteria 77137
25 Ga0209437_101103 3300025233 Bacteria 8483
26 Ga0207425_1015987 3300025245 Bacteria 1673
27 Ga0209148_1001734 3300025254 Bacteria 9515
28 Ga0209129_1000067 3300025258 Bacteria 219974
29 Ga0209675_1038540 3300025291 Bacteria 1064
30 Ga0209025_1001395 3300025294 Bacteria 32161
31 Ga0209025_1030820 3300025294 Bacteria 2555
32 Ga0209051_1073279 3300025303 Bacteria 1021
33 Ga0207697_10043081 3300025315 Bacteria 1856
34 Ga0207655_1006084 3300025728 Bacteria 8055
35 Ga0207655_1011188 3300025728 Bacteria 5363
36 Ga0207655_1043545 3300025728 Bacteria 1896
37 Ga0207655_1082998 3300025728 Bacteria 1150
38 Ga0207709_10132398 3300025935 Bacteria 1701
39 Ga0207658_10048295 3300025986 Bacteria 3120
40 Ga0209281_1000177 3300027111 Bacteria 149738
41 Ga0209371_1013874 3300027312 Bacteria 2236
42 Ga0268256_1015379 3300030500 Bacteria 2236
43 Ga0316181_1169488 3300030744 Bacteria 1174
44 Ga0265327_10138393 3300031251 Bacteria 1140
45 Ga0307408_100327597 3300031548 Bacteria 1292
46 Ga0307406_10000248 3300031901 Bacteria 32666
47 Ga0307406_10001420 3300031901 Bacteria 13271
48 Ga0307412_10051513 3300031911 Bacteria 2721
49 Ga0307416_100039842 3300032002 Bacteria 3642
50 Ga0307414_10084202 3300032004 Bacteria 2338
51 Ga0307414_10521387 3300032004 Bacteria 1055
52 Ga0395899_0288413 3300037312 Bacteria 1114
53 Ga0395900_0090121 3300037418 Bacteria 3152
54 Ga0395900_0125594 3300037418 Bacteria 2631
55 Ga0395898_0025885 3300037466 Bacteria 5906
56 Ga0395898_0075000 3300037466 Bacteria 3267
57 Ga0395901_0055727 3300038443 Bacteria 4111
58 Ga0439436_0035089 3300041404 Bacteria 1449
59 Ga0439438_002093 3300041405 Bacteria 8623
60 Ga0439439_0001592 3300041406 Bacteria 4577
61 Ga0439439_0001780 3300041406 Bacteria 4401
62 Ga0439447_034934 3300041407 Bacteria 1248
63 Ga0439466_0014143 3300041411 Bacteria 2911
64 Ga0439465_0093721 3300041413 Bacteria 1030
65 Ga0451793_1230204 3300041452 Bacteria 951
66 Ga0451797_0796477 3300041453 Bacteria 923
67 Ga0439433_0002320 3300041999 Bacteria 4026
68 Ga0439433_0016411 3300041999 Bacteria 1640
69 Ga0439449_0000436 3300042007 Bacteria 15418
70 Ga0439449_0003891 3300042007 Bacteria 5791
71 Ga0439452_013903 3300042010 Bacteria 2248
72 Ga0439457_012293 3300042014 Bacteria 1930
73 Ga0439462_0001353 3300042015 Bacteria 5414
74 Ga0450919_000363 3300042121 Bacteria 5493
75 Ga0450920_000236 3300042122 Bacteria 8310
76 Ga0450920_013194 3300042122 Bacteria 1555
77 Ga0450906_006399 3300042145 Bacteria 2379
78 Ga0450907_000203 3300042146 Bacteria 21484
79 Ga0450907_006248 3300042146 Bacteria 1992
80 Ga0439446_0024133 3300042156 Bacteria 1733
81 Ga0450908_000372 3300042184 Bacteria 8701
82 Ga0450909_001927 3300042185 Bacteria 2931
83 Ga0439434_0019673 3300042435 Bacteria 2025
84 Ga0450918_000819 3300042531 Bacteria 6528
85 Ga0450918_007380 3300042531 Bacteria 1945
86 Ga0466969_0008618 3300044656 Bacteria 5409
87 Ga0466970_0001611 3300044765 Bacteria 10885
88 Ga0495627_001264 3300046453 Bacteria 15570
89 Ga0495590_0107577 3300046457 Bacteria 994
90 Ga0495586_0249457 3300046535 Bacteria 1012
91 Ga0495660_0041526 3300046810 Bacteria 2546
92 Ga0496113_0143643 3300048916 Bacteria 1879
93 Ga0496116_0000949 3300048919 Bacteria 35686
94 Ga0496116_0007443 3300048919 Bacteria 9713
95 Ga0496116_0007563 3300048919 Bacteria 9604
96 Ga0496116_0035126 3300048919 Bacteria 3525
97 Ga0496117_0000029 3300048920 Bacteria 392339
98 Ga0496117_0000053 3300048920 Bacteria 279396
99 Ga0496117_0000255 3300048920 Bacteria 100069
100 Ga0496117_0014020 3300048920 Bacteria 6935
101 Ga0496117_0030879 3300048920 Bacteria 4101
102 Ga0496117_0041497 3300048920 Bacteria 3370
103 Ga0496118_0000229 3300048921 Bacteria 98023
104 Ga0496118_0006897 3300048921 Bacteria 12297
105 Ga0496118_0030341 3300048921 Bacteria 4514
106 Ga0496119_0003581 3300048922 Bacteria 16044
107 Ga0496119_0005695 3300048922 Bacteria 11817
108 Ga0496119_0020661 3300048922 Bacteria 4792
109 Ga0496119_0026810 3300048922 Bacteria 3983
110 Ga0496119_0043069 3300048922 Bacteria 2856
111 Ga0496120_0000948 3300048923 Bacteria 39668
112 Ga0496120_0001606 3300048923 Bacteria 26223
113 Ga0496120_0002538 3300048923 Bacteria 18222
114 Ga0496120_0004838 3300048923 Bacteria 11019
115 Ga0496120_0005690 3300048923 Bacteria 9839
116 Ga0496120_0032542 3300048923 Bacteria 3143
117 Ga0496121_0040904 3300048924 Bacteria 4060
118 Ga0496121_0172829 3300048924 Bacteria 1567
119 Ga0496122_0000022 3300048925 Bacteria 388704
120 Ga0496122_0000200 3300048925 Bacteria 133548
121 Ga0496122_0002518 3300048925 Bacteria 25817
122 Ga0496122_0003314 3300048925 Bacteria 21296
123 Ga0496122_0030456 3300048925 Bacteria 4520
124 Ga0496122_0034542 3300048925 Bacteria 4136
125 Ga0496122_0046160 3300048925 Bacteria 3377
126 Ga0496122_0049275 3300048925 Bacteria 3228
127 Ga0496123_0000016 3300048926 Bacteria 424330
128 Ga0496123_0000076 3300048926 Bacteria 194050
129 Ga0496123_0003526 3300048926 Bacteria 17426
130 Ga0496123_0005486 3300048926 Bacteria 12755
131 Ga0496123_0045705 3300048926 Bacteria 2980
132 Ga0496123_0155301 3300048926 Bacteria 1228
133 Ga0496124_0000197 3300048927 Bacteria 119302
134 Ga0496124_0000215 3300048927 Bacteria 112587
135 Ga0496124_0011090 3300048927 Bacteria 9041
136 Ga0496124_0013931 3300048927 Bacteria 7814
137 Ga0496124_0019633 3300048927 Bacteria 6281
138 Ga0496124_0022443 3300048927 Bacteria 5785
139 Ga0496124_0051457 3300048927 Bacteria 3505
140 Ga0496125_0004640 3300048928 Bacteria 15692
141 Ga0496125_0008509 3300048928 Bacteria 10729
142 Ga0496125_0018382 3300048928 Bacteria 6641
143 Ga0496125_0030302 3300048928 Bacteria 4842
144 Ga0496125_0037945 3300048928 Bacteria 4181
145 Ga0496125_0049958 3300048928 Bacteria 3468
146 Ga0496125_0051686 3300048928 Bacteria 3386
147 Ga0496125_0207298 3300048928 Bacteria 1277
148 Ga0496126_0000281 3300048929 Bacteria 107633
149 Ga0496126_0000737 3300048929 Bacteria 59387
150 Ga0496126_0001740 3300048929 Bacteria 32284
151 Ga0496126_0004970 3300048929 Bacteria 15509
152 Ga0496126_0010329 3300048929 Bacteria 9798
153 Ga0496126_0018148 3300048929 Bacteria 6982
154 Ga0496126_0093412 3300048929 Bacteria 2641
155 Ga0501031_0136750 3300049568 Bacteria 1601
156 Ga0501032_0000782 3300049569 Bacteria 25766
157 Ga0501032_0004706 3300049569 Bacteria 10237
158 Ga0501034_0000010 3300049571 Bacteria 312213
159 Ga0501037_0004402 3300049573 Bacteria 10234
160 Ga0501037_0246738 3300049573 Bacteria 1250
161 Ga0501038_0071412 3300049574 Bacteria 2944
162 Ga0501038_0127353 3300049574 Bacteria 2094
163 Ga0501039_0001360 3300049575 Bacteria 17932
164 Ga0501043_0044908 3300049579 Bacteria 3475
165 Ga0501043_0052257 3300049579 Bacteria 3210
166 Ga0501073_0000015 3300049589 Bacteria 157300
167 Ga0501044_0073806 3300049823 Bacteria 3467
168 nmdc:mga03n38_165334_c1 3300050490 Bacteria 1123
169 nmdc:mga00v17_19194_c1 3300050491 Bacteria 3899
170 nmdc:mga00v17_25369_c2 3300050491 Bacteria 2915
171 nmdc:mga0sz30_8846_c1 3300050516 Bacteria 3815
172 Ga0500559_0000496 3300053136 Bacteria 27644
173 Ga0500573_0224528 3300053140 Bacteria 983

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300048924 Ga0496121_0172829 Ga0496121_0172829_400_1302 260
2 3300041406 Ga0439439_0001780 Ga0439439_0001780_2281_3195 265
3 3300025225 Ga0209566_100156 Ga0209566_10015610 267
4 3300025291 Ga0209675_1038540 Ga0209675_10385401 267
5 3300025294 Ga0209025_1030820 Ga0209025_10308202 267
6 3300048919 Ga0496116_0035126 Ga0496116_0035126_2387_3286 267
7 3300048923 Ga0496120_0002538 Ga0496120_0002538_15765_16664 267
8 iso_pu_bacteria 2512564039 2512733724 267
9 iso_pu_bacteria 2865002811 2865005548 267
10 iso_pu_bacteria 8057473075 8057478373 267
11 3300003751 Ga0055538_1000419 Ga0055538_10004199 268
12 3300011119 Ga0105246_10077770 Ga0105246_100777703 268
13 3300025224 Ga0209784_100072 Ga0209784_100072129 268
14 3300025233 Ga0209437_101103 Ga0209437_1011033 268
15 3300025728 Ga0207655_1082998 Ga0207655_10829981 268
16 3300041404 Ga0439436_0035089 Ga0439436_0035089_494_1417 268
17 3300041999 Ga0439433_0002320 Ga0439433_0002320_937_1860 268
18 3300042007 Ga0439449_0000436 Ga0439449_0000436_4806_5729 268
19 3300042007 Ga0439449_0003891 Ga0439449_0003891_3455_4393 268
20 3300042015 Ga0439462_0001353 Ga0439462_0001353_1091_2014 268
21 3300044656 Ga0466969_0008618 Ga0466969_0008618_1553_2476 268
22 3300048919 Ga0496116_0000949 Ga0496116_0000949_18596_19498 268
23 3300048924 Ga0496121_0040904 Ga0496121_0040904_887_1789 268
24 3300048925 Ga0496122_0002518 Ga0496122_0002518_23200_24087 268
25 iso_pu_bacteria 2563366752 2563926310 268
26 iso_pu_bacteria 2571042588 2573041558 268
27 iso_pu_bacteria 2576861424 2578336414 268
28 iso_pu_bacteria 2579778775 2580931743 268
29 iso_pu_bacteria 2585428059 2587741732 268
30 iso_pu_bacteria 2619619294 2621274603 268
31 iso_pu_bacteria 2643221543 2643737668 268
32 iso_pu_bacteria 2643221676 2644422916 268
33 iso_pu_bacteria 2721755693 2723603191 268
34 iso_pu_bacteria 2728369359 2730139221 268
35 iso_pu_bacteria 2751185905 2753808454 268
36 iso_pu_bacteria 2791355222 2793181616 268
37 iso_pu_bacteria 2802428803 2802436258 268
38 iso_pu_bacteria 2818991459 2819672324 268
39 iso_pu_bacteria 2821111986 2821113852 268
40 iso_pu_bacteria 2857472729 2857476814 268
41 iso_pu_bacteria 2881636855 2881639629 268
42 iso_pu_bacteria 2885526491 2885527222 268
43 iso_pu_bacteria 2889042446 2889044545 268
44 iso_pu_bacteria 2889276214 2889279150 268
45 iso_pu_bacteria 2904113452 2904114519 268
46 iso_pu_bacteria 2904162308 2904165751 268
47 iso_pu_bacteria 2904490793 2904491432 268
48 iso_pu_bacteria 2904595352 2904599394 268
49 iso_pu_bacteria 2904755435 2904759725 268
50 iso_pu_bacteria 2907202186 2907204208 268
51 iso_pu_bacteria 2919160200 2919160691 268
52 iso_pu_bacteria 2919425241 2919430788 268
53 iso_pu_bacteria 2925326138 2925329522 268
54 iso_pu_bacteria 2931384279 2931387980 268
55 iso_pu_bacteria 2939702853 2939706109 268
56 iso_pu_bacteria 2945991243 2945993415 268
57 iso_pu_bacteria 2946053406 2946056168 268
58 iso_pu_bacteria 2971511577 2971512924 268
59 iso_pu_bacteria 2980125574 2980127354 268
60 iso_pu_bacteria 2980176882 2980181490 268
61 iso_pu_bacteria 2996706504 2996707432 268
62 iso_pu_bacteria 648028048 648169552 268
63 iso_pu_bacteria 8054795415 8054796248 268
64 iso_pu_bacteria 8054795415 8054800603 268
65 3300003841 Ga0055541_1005278 Ga0055541_10052782 269
66 3300025225 Ga0209566_100022 Ga0209566_100022116 269
67 iso_pu_bacteria 8002317523 8002318323 269
68 3300009036 Ga0105244_10040496 Ga0105244_100404963 270
69 3300025728 Ga0207655_1011188 Ga0207655_10111883 270
70 3300025728 Ga0207655_1043545 Ga0207655_10435452 270
71 3300048919 Ga0496116_0007563 Ga0496116_0007563_4325_5233 270
72 3300048927 Ga0496124_0019633 Ga0496124_0019633_1176_2105 270
73 3300048928 Ga0496125_0008509 Ga0496125_0008509_2866_3774 270
74 iso_pu_bacteria 2864733723 2864733888 270
75 iso_pu_bacteria 2939679117 2939681660 270
76 3300041452 Ga0451793_1230204 Ga0451793_1230204_20_835 271
77 iso_pu_bacteria 2524023129 2524187505 271
78 iso_pu_bacteria 2857453340 2857459913 271
79 iso_pu_bacteria 2971410472 2971412699 271
80 iso_pu_bacteria 8055632911 8055637218 271
81 iso_pu_bacteria 8056533031 8056538687 271
82 iso_pu_bacteria 8057977335 8057980189 271
83 3300027312 Ga0209371_1013874 Ga0209371_10138742 272
84 3300030500 Ga0268256_1015379 Ga0268256_10153793 272
85 iso_pu_bacteria 2738543010 2739230030 272
86 iso_pu_bacteria 2857604169 2857606863 272
87 iso_pu_bacteria 2857609550 2857612632 272
88 3300005435 Ga0070714_100500475 Ga0070714_1005004751 273
89 3300005436 Ga0070713_100383566 Ga0070713_1003835661 273
90 iso_pu_bacteria 2802429420 2805347929 273
91 iso_pu_bacteria 8022948649 8022952776 273
92 3300002773 JGI25152J39213_1000140 JGI25152J39213_100014042 275
93 3300003320 rootH2_10076913 rootH2_100769135 275
94 3300003762 Ga0055542_1009766 Ga0055542_10097662 275
95 3300005288 Ga0065714_10018352 Ga0065714_100183523 275
96 3300005367 Ga0070667_100036449 Ga0070667_1000364492 275
97 3300005543 Ga0070672_100043947 Ga0070672_1000439472 275
98 3300006051 Ga0075364_10019827 Ga0075364_100198274 275
99 3300006051 Ga0075364_10056057 Ga0075364_100560573 275
100 3300006186 Ga0075369_10014845 Ga0075369_100148453 275
101 3300006946 Ga0079104_1003628 Ga0079104_10036284 275
102 3300009036 Ga0105244_10020730 Ga0105244_100207304 275
103 3300011119 Ga0105246_10002276 Ga0105246_1000227613 275
104 3300013104 Ga0157370_10295488 Ga0157370_102954882 275
105 3300013308 Ga0157375_10432955 Ga0157375_104329552 275
106 3300014326 Ga0157380_10097984 Ga0157380_100979842 275
107 3300025245 Ga0207425_1015987 Ga0207425_10159872 275
108 3300025254 Ga0209148_1001734 Ga0209148_100173410 275
109 3300025258 Ga0209129_1000067 Ga0209129_1000067124 275
110 3300025294 Ga0209025_1001395 Ga0209025_100139512 275
111 3300025303 Ga0209051_1073279 Ga0209051_10732791 275
112 3300025315 Ga0207697_10043081 Ga0207697_100430811 275
113 3300025728 Ga0207655_1006084 Ga0207655_10060849 275
114 3300025935 Ga0207709_10132398 Ga0207709_101323982 275
115 3300025986 Ga0207658_10048295 Ga0207658_100482954 275
116 3300027111 Ga0209281_1000177 Ga0209281_1000177138 275
117 3300030744 Ga0316181_1169488 Ga0316181_11694882 275
118 3300031251 Ga0265327_10138393 Ga0265327_101383931 275
119 3300031548 Ga0307408_100327597 Ga0307408_1003275971 275
120 3300031901 Ga0307406_10000248 Ga0307406_1000024824 275
121 3300031901 Ga0307406_10001420 Ga0307406_100014208 275
122 3300031911 Ga0307412_10051513 Ga0307412_100515132 275
123 3300032002 Ga0307416_100039842 Ga0307416_1000398422 275
124 3300032004 Ga0307414_10084202 Ga0307414_100842021 275
125 3300032004 Ga0307414_10521387 Ga0307414_105213871 275
126 3300037312 Ga0395899_0288413 Ga0395899_0288413_162_1103 275
127 3300037418 Ga0395900_0090121 Ga0395900_0090121_986_1927 275
128 3300037418 Ga0395900_0125594 Ga0395900_0125594_109_1050 275
129 3300037466 Ga0395898_0025885 Ga0395898_0025885_408_1349 275
130 3300037466 Ga0395898_0075000 Ga0395898_0075000_1388_2329 275
131 3300038443 Ga0395901_0055727 Ga0395901_0055727_2340_3281 275
132 3300041405 Ga0439438_002093 Ga0439438_002093_7104_8045 275
133 3300041406 Ga0439439_0001592 Ga0439439_0001592_2569_3510 275
134 3300041407 Ga0439447_034934 Ga0439447_034934_402_1229 275
135 3300041411 Ga0439466_0014143 Ga0439466_0014143_1485_2426 275
136 3300041413 Ga0439465_0093721 Ga0439465_0093721_26_967 275
137 3300041453 Ga0451797_0796477 Ga0451797_0796477_41_868 275
138 3300041999 Ga0439433_0016411 Ga0439433_0016411_209_1150 275
139 3300042010 Ga0439452_013903 Ga0439452_013903_38_979 275
140 3300042014 Ga0439457_012293 Ga0439457_012293_348_1289 275
141 3300042121 Ga0450919_000363 Ga0450919_000363_3836_4777 275
142 3300042122 Ga0450920_000236 Ga0450920_000236_6695_7636 275
143 3300042122 Ga0450920_013194 Ga0450920_013194_336_1277 275
144 3300042145 Ga0450906_006399 Ga0450906_006399_552_1493 275
145 3300042146 Ga0450907_000203 Ga0450907_000203_6194_7135 275
146 3300042146 Ga0450907_006248 Ga0450907_006248_528_1469 275
147 3300042156 Ga0439446_0024133 Ga0439446_0024133_33_974 275
148 3300042184 Ga0450908_000372 Ga0450908_000372_1415_2356 275
149 3300042185 Ga0450909_001927 Ga0450909_001927_1645_2586 275
150 3300042435 Ga0439434_0019673 Ga0439434_0019673_893_1834 275
151 3300042531 Ga0450918_000819 Ga0450918_000819_601_1542 275
152 3300042531 Ga0450918_007380 Ga0450918_007380_464_1405 275
153 3300044765 Ga0466970_0001611 Ga0466970_0001611_9441_10388 275
154 3300046453 Ga0495627_001264 Ga0495627_001264_10419_11360 275
155 3300046457 Ga0495590_0107577 Ga0495590_0107577_94_975 275
156 3300046535 Ga0495586_0249457 Ga0495586_0249457_10_951 275
157 3300046810 Ga0495660_0041526 Ga0495660_0041526_1288_2241 275
158 3300048916 Ga0496113_0143643 Ga0496113_0143643_132_1073 275
159 3300048919 Ga0496116_0007443 Ga0496116_0007443_7954_8895 275
160 3300048920 Ga0496117_0000029 Ga0496117_0000029_70926_71900 275
161 3300048920 Ga0496117_0000053 Ga0496117_0000053_212681_213622 275
162 3300048920 Ga0496117_0000255 Ga0496117_0000255_66268_67209 275
163 3300048920 Ga0496117_0014020 Ga0496117_0014020_3411_4352 275
164 3300048920 Ga0496117_0030879 Ga0496117_0030879_573_1514 275
165 3300048920 Ga0496117_0041497 Ga0496117_0041497_1756_2697 275
166 3300048921 Ga0496118_0000229 Ga0496118_0000229_2954_3895 275
167 3300048921 Ga0496118_0006897 Ga0496118_0006897_1799_2740 275
168 3300048921 Ga0496118_0030341 Ga0496118_0030341_3474_4415 275
169 3300048922 Ga0496119_0003581 Ga0496119_0003581_9061_10002 275
170 3300048922 Ga0496119_0005695 Ga0496119_0005695_4796_5728 275
171 3300048922 Ga0496119_0020661 Ga0496119_0020661_905_1846 275
172 3300048922 Ga0496119_0026810 Ga0496119_0026810_2122_3063 275
173 3300048922 Ga0496119_0043069 Ga0496119_0043069_919_1860 275
174 3300048923 Ga0496120_0000948 Ga0496120_0000948_31377_32318 275
175 3300048923 Ga0496120_0001606 Ga0496120_0001606_13071_14012 275
176 3300048923 Ga0496120_0004838 Ga0496120_0004838_9750_10682 275
177 3300048923 Ga0496120_0005690 Ga0496120_0005690_134_1075 275
178 3300048923 Ga0496120_0032542 Ga0496120_0032542_901_1848 275
179 3300048925 Ga0496122_0000022 Ga0496122_0000022_81263_82204 275
180 3300048925 Ga0496122_0000200 Ga0496122_0000200_28073_29014 275
181 3300048925 Ga0496122_0003314 Ga0496122_0003314_3701_4624 275
182 3300048925 Ga0496122_0030456 Ga0496122_0030456_3291_4232 275
183 3300048925 Ga0496122_0034542 Ga0496122_0034542_2092_3033 275
184 3300048925 Ga0496122_0046160 Ga0496122_0046160_1149_2090 275
185 3300048925 Ga0496122_0049275 Ga0496122_0049275_1271_2212 275
186 3300048926 Ga0496123_0000016 Ga0496123_0000016_128210_129151 275
187 3300048926 Ga0496123_0000076 Ga0496123_0000076_165023_165964 275
188 3300048926 Ga0496123_0003526 Ga0496123_0003526_16421_17362 275
189 3300048926 Ga0496123_0005486 Ga0496123_0005486_8623_9546 275
190 3300048926 Ga0496123_0045705 Ga0496123_0045705_1126_2067 275
191 3300048926 Ga0496123_0155301 Ga0496123_0155301_85_1026 275
192 3300048927 Ga0496124_0000197 Ga0496124_0000197_116126_117067 275
193 3300048927 Ga0496124_0000215 Ga0496124_0000215_36154_37086 275
194 3300048927 Ga0496124_0011090 Ga0496124_0011090_3806_4747 275
195 3300048927 Ga0496124_0013931 Ga0496124_0013931_4366_5307 275
196 3300048927 Ga0496124_0022443 Ga0496124_0022443_1187_2128 275
197 3300048927 Ga0496124_0051457 Ga0496124_0051457_2111_3052 275
198 3300048928 Ga0496125_0004640 Ga0496125_0004640_2416_3357 275
199 3300048928 Ga0496125_0018382 Ga0496125_0018382_1378_2319 275
200 3300048928 Ga0496125_0030302 Ga0496125_0030302_2263_3186 275
201 3300048928 Ga0496125_0037945 Ga0496125_0037945_1158_2099 275
202 3300048928 Ga0496125_0049958 Ga0496125_0049958_2318_3259 275
203 3300048928 Ga0496125_0051686 Ga0496125_0051686_608_1549 275
204 3300048928 Ga0496125_0207298 Ga0496125_0207298_161_1093 275
205 3300048929 Ga0496126_0000281 Ga0496126_0000281_41031_41963 275
206 3300048929 Ga0496126_0000737 Ga0496126_0000737_51495_52436 275
207 3300048929 Ga0496126_0001740 Ga0496126_0001740_5611_6543 275
208 3300048929 Ga0496126_0004970 Ga0496126_0004970_13843_14784 275
209 3300048929 Ga0496126_0010329 Ga0496126_0010329_212_1153 275
210 3300048929 Ga0496126_0018148 Ga0496126_0018148_2536_3459 275
211 3300048929 Ga0496126_0093412 Ga0496126_0093412_1055_1996 275
212 3300049568 Ga0501031_0136750 Ga0501031_0136750_607_1548 275
213 3300049569 Ga0501032_0000782 Ga0501032_0000782_5206_6147 275
214 3300049569 Ga0501032_0004706 Ga0501032_0004706_7929_8870 275
215 3300049571 Ga0501034_0000010 Ga0501034_0000010_220994_221935 275
216 3300049573 Ga0501037_0004402 Ga0501037_0004402_201_1142 275
217 3300049573 Ga0501037_0246738 Ga0501037_0246738_92_1033 275
218 3300049574 Ga0501038_0071412 Ga0501038_0071412_486_1427 275
219 3300049574 Ga0501038_0127353 Ga0501038_0127353_1044_1985 275
220 3300049575 Ga0501039_0001360 Ga0501039_0001360_16529_17470 275
221 3300049579 Ga0501043_0044908 Ga0501043_0044908_87_1028 275
222 3300049579 Ga0501043_0052257 Ga0501043_0052257_12_953 275
223 3300049589 Ga0501073_0000015 Ga0501073_0000015_74215_75156 275
224 3300049823 Ga0501044_0073806 Ga0501044_0073806_2003_2944 275
225 3300050490 nmdc:mga03n38_165334_c1 nmdc:mga03n38_165334_c1_70_1011 275
226 3300050491 nmdc:mga00v17_19194_c1 nmdc:mga00v17_19194_c1_2020_2961 275
227 3300050491 nmdc:mga00v17_25369_c2 nmdc:mga00v17_25369_c2_1216_2169 275
228 3300050516 nmdc:mga0sz30_8846_c1 nmdc:mga0sz30_8846_c1_1453_2394 275
229 3300053136 Ga0500559_0000496 Ga0500559_0000496_17542_18483 275
230 3300053140 Ga0500573_0224528 Ga0500573_0224528_11_961 275
231 iso_pu_bacteria 2548877040 2550902784 275
232 iso_pu_bacteria 2554235227 2555229600 275
233 iso_pu_bacteria 2565956761 2566992467 275
234 iso_pu_bacteria 2571042143 2571528418 275
235 iso_pu_bacteria 2585428157 2588107821 275
236 iso_pu_bacteria 2643221542 2643732770 275
237 iso_pu_bacteria 2643221546 2643751769 275
238 iso_pu_bacteria 2643221553 2643783671 275
239 iso_pu_bacteria 2643221575 2643888261 275
240 iso_pu_bacteria 2643221630 2644171560 275
241 iso_pu_bacteria 2643221724 2644679090 275
242 iso_pu_bacteria 2654587600 2655031614 275
243 iso_pu_bacteria 2728368933 2728534909 275
244 iso_pu_bacteria 2728369380 2730228587 275
245 iso_pu_bacteria 2747842429 2747952512 275
246 iso_pu_bacteria 2751185788 2753300937 275
247 iso_pu_bacteria 2757320536 2758226068 275
248 iso_pu_bacteria 2773857758 2774380844 275
249 iso_pu_bacteria 2808606306 2808629372 275
250 iso_pu_bacteria 2844849076 2844851445 275
251 iso_pu_bacteria 2848551377 2848551823 275
252 iso_pu_bacteria 2852646457 2852648781 275
253 iso_pu_bacteria 2852663356 2852663863 275
254 iso_pu_bacteria 2852677369 2852680765 275
255 iso_pu_bacteria 2857720070 2857721218 275
256 iso_pu_bacteria 2857723135 2857726293 275
257 iso_pu_bacteria 2857740372 2857742641 275
258 iso_pu_bacteria 2870628048 2870630222 275
259 iso_pu_bacteria 2904430863 2904432006 275
260 iso_pu_bacteria 2904497146 2904498506 275
261 iso_pu_bacteria 2904501621 2904504486 275
262 iso_pu_bacteria 2904509784 2904511261 275
263 iso_pu_bacteria 2904765812 2904766460 275
264 iso_pu_bacteria 2904776348 2904779641 275
265 iso_pu_bacteria 2906799679 2906800584 275
266 iso_pu_bacteria 2908674828 2908676708 275
267 iso_pu_bacteria 2908678064 2908680011 275
268 iso_pu_bacteria 2909074476 2909077540 275
269 iso_pu_bacteria 2910809715 2910814802 275
270 iso_pu_bacteria 2919034639 2919035199 275
271 iso_pu_bacteria 2919039151 2919041572 275
272 iso_pu_bacteria 2919042368 2919045823 275
273 iso_pu_bacteria 2919059106 2919060020 275
274 iso_pu_bacteria 2919069694 2919072192 275
275 iso_pu_bacteria 2919420072 2919421104 275
276 iso_pu_bacteria 2919432681 2919433138 275
277 iso_pu_bacteria 2919538618 2919540688 275
278 iso_pu_bacteria 2928090899 2928092133 275
279 iso_pu_bacteria 2928104781 2928106597 275
280 iso_pu_bacteria 2928500415 2928502812 275
281 iso_pu_bacteria 2932398195 2932399511 275
282 iso_pu_bacteria 2932426870 2932429767 275
283 iso_pu_bacteria 2933418574 2933420247 275
284 iso_pu_bacteria 2938649242 2938649314 275
285 iso_pu_bacteria 2939598168 2939600373 275
286 iso_pu_bacteria 2939615513 2939615722 275
287 iso_pu_bacteria 2939647034 2939651447 275
288 iso_pu_bacteria 2939674588 2939675071 275
289 iso_pu_bacteria 2945968032 2945968235 275
290 iso_pu_bacteria 2946080515 2946084417 275
291 iso_pu_bacteria 2968558590 2968559432 275
292 iso_pu_bacteria 2971403814 2971406142 275
293 iso_pu_bacteria 2974294766 2974296592 275
294 iso_pu_bacteria 2974324384 2974327173 275
295 iso_pu_bacteria 2977228692 2977228796 275
296 iso_pu_bacteria 2977236895 2977237628 275
297 iso_pu_bacteria 2977264416 2977267495 275
298 iso_pu_bacteria 2984527788 2984529417 275
299 iso_pu_bacteria 2984532647 2984535522 275
300 iso_pu_bacteria 2984542743 2984544588 275
301 iso_pu_bacteria 2984551494 2984551657 275
302 iso_pu_bacteria 2984580707 2984581094 275
303 iso_pu_bacteria 2988225383 2988231531 275
304 iso_pu_bacteria 2996632988 2996633557 275
305 iso_pu_bacteria 8016254467 8016257479 275
306 iso_pu_bacteria 8054465665 8054468421 275

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

57

116

0.98

PF03466

LysR_substrate

LysR substrate binding domain

149

353

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
2hxr-assembly1.cif.gz_A structure of the ligand binding domain of e. coli cynr, a transcriptional regulator controlling cyanate metabolism 0.8277 61 266
2hxr-assembly1.cif.gz_A structure of the ligand binding domain of e. coli cynr, a transcriptional regulator controlling cyanate metabolism 0.8163 61 266
5xxp-assembly1.cif.gz_B crystal structure of cbnr_dbd-dna complex 0.7946 2 53
5vvh-assembly1.cif.gz_B crystal structure of the effector binding domain of lysr-type transcriptional regulator, occr from agrobacterium tumefaciens 0.7626 58 269
5z49-assembly1.cif.gz_A crystal structure of the effector-binding domain of synechococcus elongatus cmpr in complex with ribulose-1,5-bisphosphate 0.7508 60 270
ID Description Score Start End Superfamily
af_Q47141_1_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8308 2 50 1.10.10.10
af_P76250_6_90_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8296 2 50 1.10.10.10
af_P05827_1_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8203 2 50 1.10.10.10
af_P0ACQ4_1_84_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8125 2 50 1.10.10.10
af_P36771_5_92_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8007 2 50 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7X6ISU7-F1-model_v4 deleted 0.8648 117 229
AF-A0A3D0NVB2-F1-model_v4 LysR family transcriptional regulator 0.8645 69 270 GO:0003677
GO:0003700
GO:0032993
AF-A0A4R5VKT6-F1-model_v4 LysR substrate-binding domain-containing protein 0.8642 60 268 GO:0003700
GO:0032993
AF-E8JMT3-F1-model_v4 LysR substrate-binding domain-containing protein 0.864 127 262 GO:0003677
GO:0003700
GO:0032993
AF-A0A7X6ISU7-F1-model_v4 deleted 0.8579 117 229

Feature Viewer

pLDDT pTM Quality
81.46 0.7 High
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Predicted Structure (AlphaFold2)

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