F397316

General Info

Members Datasets Scaffolds Average Seq Length
303 196 235 843

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2508501125|2509129931
Length 945
Sequence ELKPLFSRLNDYCRRSLEDAAGLALSRGHYEISIEHLLSKLLDDPHADAALIVNQLDIDVGRLRAQVDAQINALRTGNGGRPVFSPLLAEWVQDAWVVASVTLDQPVIRGAALLIALRLAGRSYGAGARYAETLGALREEALLEAFDACAGLSIETLSSAASTDGADGKSSAAHSGGSSAIARFCEDFTAKAAAGKIDPVFGRDREIRQMLDILARRRKNNPILVGDPGVGKTAVVEGLAMRIVEGDVPEFLANVRLLGLDMGLLEAGASVKGEFENRLRGVIDEVKASTTPIVLFIDEAHMLVGAGAQAGGGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQLVKLDQPDVPTSVQILRGLKDRYEAAHGVAIRDDALIAAAELSARYVTGRQLPDKAVDLLDTAAARVKIGLGVKPFHMEELERGLLGLERERVALTRDAAHGHGEHAQRLDELAVERAAKEAELAALRERWAAEQSAARRVFDARAALARHDAQVVDAPASGAGSSSQATAPAQHEAQGKQVDREGAEAGDVSVPAPLLSVPSDESRLRLSAELAAAQAALADTQQGAPLLFTDVSPDAVARVVSDWTGVPLGKLQRDRASMSLSLADALRQRIRGQDWALETIASMLKSSSSGLRDPEQPLGVFLLVGPSGVGKTESAMAVADHMFGGEQALVTINMSEFLERHSVSRLVGSPPGYVGYGEGGVLTEAIRQRPFSVVLLDEVEKAHLDVVNLFYQVFDKGTLNDGEGREIDFRNTVVFLTSNLASAEISSIIASEGDSPVDMETLVERIRPVLSQHFKPALLARMTIVPYRTLAASALGGIVKLKLARIAARLLASSGVELLVDDAVADEIAQRCTEVETGARNVDFILRKHLMPRMSDLLLEAMADGRTLKFINVCTDGQGGWNVTGGEATEELAGLDPVQTEGVAAHG

Samples

Sample ID Description Type Environment
1 2508501125 Burkholderia sp. WSM2232 Isolate Nodule
2 2511231010 Pseudomonas sp. GM25 Isolate Nodule
3 2511231011 Pseudomonas sp. GM30 Isolate Nodule
4 2511231156 Pseudomonas ogarae F113 Isolate Rhizosphere
5 2515154122 Paraburkholderia atlantica JPY251 Isolate Nodule
6 2599185155 Pseudomonas sp. NFACC10-1 Isolate Rhizoplane
7 2599185212 Pseudomonas sp. NFACC15-1 Isolate Rhizoplane
8 2599185288 Pseudomonas sp. NFACC25 Isolate Rhizoplane
9 2599185300 Pseudomonas sp. NFACC39-1 Isolate Rhizoplane
10 2599185303 Pseudomonas sp. NFACC42-2 Isolate Rhizoplane
11 2599185305 Pseudomonas sp. NFACC07-1 Isolate Rhizoplane
12 2599185306 Pseudomonas sp. NFACC16-2 Isolate Rhizoplane
13 2599185307 Pseudomonas sp. NFACC02 Isolate Rhizoplane
14 2599185308 Pseudomonas sp. NFACC17-2 Isolate Rhizoplane
15 2599185314 Pseudomonas sp. NFACC23-1 Isolate Rhizoplane
16 2599185319 Pseudomonas sp. NFACC24-1 Isolate Rhizoplane
17 2599185322 Pseudomonas sp. NFACC14 Isolate Rhizoplane
18 2600254954 Pseudomonas sp. NFACC19-2 Isolate Rhizoplane
19 2600255318 Pseudomonas putida NFIX47 Isolate Rhizoplane
20 2643221650 Pseudomonas sp. Root401 Isolate Unclassified
21 2651869719 Genome Sequence of Pseudomonas fluorescens UM270 Isolate Rhizosphere
22 2675903420 Pseudomonas fluorescens Ps006 Isolate Unclassified
23 2675903515 Pseudomonas thivervalensis DSM 13194 Isolate Unclassified
24 2728369097 Stutzerimonas balearica st101 Isolate Unclassified
25 2738541271 Pseudomonas sp. GV021 Isolate Unclassified
26 2738541277 Variovorax sp. GV051 Isolate Unclassified
27 2738541294 Pseudomonas sp. GV087 Isolate Unclassified
28 2738541309 Pseudomonas sp. GV047 Isolate Unclassified
29 2738543016 Pseudomonas sp. GV012 Isolate Unclassified
30 2738543019 Variovorax sp. GV040 Isolate Unclassified
31 2744054620 Pseudomonas thivervalensis LMG 21626 Isolate Unclassified
32 2808606361 Pseudomonas sp. SJZ075 Isolate Rhizosphere
33 2808606376 Pseudomonas sp. SJZ074 Isolate Rhizosphere
34 2808606378 Pseudomonas sp. SJZ078 Isolate Rhizosphere
35 2808606380 Pseudomonas sp. SJZ085 Isolate Rhizosphere
36 2808606383 Pseudomonas sp. SJZ124 Isolate Rhizosphere
37 2808606385 Pseudomonas sp. SJZ103 Isolate Rhizosphere
38 2808606388 Pseudomonas sp. SJZ094 Isolate Rhizosphere
39 2808606389 Pseudomonas sp. SJZ101 Isolate Rhizosphere
40 2811994881 Pseudomonas sp. SLBN-26 Isolate Unclassified
41 2825651385 Pseudomonas brassicacearum L13-6-12 Isolate Rhizosphere
42 2826581358 Pseudomonas viridiflava CDRTc14 Isolate Unclassified
43 2834028612 Pseudomonas fluorescens 513 Isolate Unclassified
44 2842815866 Pseudomonas sp. R-72210 Isolate Unclassified
45 2842854478 Pseudomonas sp. R-71998 Isolate Unclassified
46 2852612431 Pseudomonas sp. SJZ073 Isolate Rhizosphere
47 2852667396 Pseudomonas sp. JAI120 Isolate Rhizosphere
48 2860867994 Pseudomonas sp. R1-43-08 Isolate Rhizosphere
49 2902682994 Paraburkholderia atlantica CNPSo 3155 Isolate Unclassified
50 2913036834 Pseudomonas viciae 11K1 Isolate Rhizosphere
51 2923519811 Pseudomonas otitidis SLBN-103 Isolate Rhizosphere
52 2923586266 Pseudomonas fluorescens 1550 Isolate Rhizosphere
53 2929144301 Pseudomonas sp. R-71838 Hybrid assembly Isolate Unclassified
54 2929189879 Pseudomonas sp. R-71842 Hybrid assembly Isolate Unclassified
55 2931369376 Pseudomonas fluorescens DR133 Isolate Rhizosphere
56 2945961074 Pseudomonas sp. W2I6 Isolate Rhizosphere
57 2946006987 Pseudomonas sp. W3I7 Isolate Rhizosphere
58 2946027586 Pseudomonas sp. W4I3 Isolate Rhizosphere
59 2988728565 Pseudomonas corrugata RM1-1-4 Isolate Rhizosphere
60 2990703756 Paraburkholderia graminis SLBN-33 Isolate Rhizosphere
61 3007866637 Pseudomonas marvdashtae SWRI102 Isolate Rhizosphere
62 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
63 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
64 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
65 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
66 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
67 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
68 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
69 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
70 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
71 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
72 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
73 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
74 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
75 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
76 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
77 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
78 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
79 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
80 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
81 3300012498 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410 Metagenome Rhizosphere
82 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
83 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
84 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
85 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
86 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
87 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
88 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
89 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
90 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
91 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
92 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
93 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
94 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
95 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
96 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
108 3300030735 Rhizosphere soil microbial communities in a healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 4 Metagenome Rhizosphere
109 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
110 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
111 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
112 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
113 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
114 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
115 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
116 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
117 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
118 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
119 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
120 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
121 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
122 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
123 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
124 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
125 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
126 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
127 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
128 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
129 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
130 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
131 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
132 3300042147 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_080116_2618 Metagenome Rhizosphere
133 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
134 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
135 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
136 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
137 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
138 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
139 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
140 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
141 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
142 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
143 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
144 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
145 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
146 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
147 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
148 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
149 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
150 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
151 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
152 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
153 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
154 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
155 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
156 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
157 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
158 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
159 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
160 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
161 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
162 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
163 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
164 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
165 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
166 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
167 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
168 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
169 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
170 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
171 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
172 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
173 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
174 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
175 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
176 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
177 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
178 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
179 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
180 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
181 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
182 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
183 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
184 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
185 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
186 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
187 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
188 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
189 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
190 8054503363 Pseudomonas sivasensis BsEB-1 Isolate Unclassified
191 8055817908 Pseudomonas pergaminensis 1008 Isolate Rhizosphere
192 8055878733 Pseudomonas palmensis BBB001 Isolate Rhizosphere
193 8056131705 Pseudomonas asgharzadehiana SWRI132 Isolate Rhizosphere
194 8056143049 Pseudomonas alvandae SWRI17 Isolate Rhizosphere
195 8056161164 Pseudomonas azadiae SWRI103 Isolate Rhizosphere
196 8057160832 Larsenimonas rhizosphaerae GH2-1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 77.56
Metatranscriptomes 0
Isolates 22.44

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.28
Nodule 1.98
Rhizoplane 4.62
Rhizosphere 67.33
Stem 0
Stem Tuber 0
Unclassified 20.79

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055536_1005458 3300003781 Bacteria 6212
2 Ga0055536_1005698 3300003781 Bacteria 6011
3 Ga0055530_10000068 3300003791 Bacteria 92189
4 Ga0055530_10001054 3300003791 Bacteria 21877
5 Ga0055540_1000106 3300003792 Bacteria 92189
6 Ga0055540_1000759 3300003792 Bacteria 21890
7 Ga0055531_10000423 3300003794 Bacteria 40041
8 Ga0065714_10002305 3300005288 Bacteria 29558
9 Ga0065714_10064559 3300005288 Bacteria 36080
10 Ga0065704_10074767 3300005289 Bacteria 6016
11 Ga0070670_100000270 3300005331 Bacteria 45963
12 Ga0070670_100022113 3300005331 Bacteria 5474
13 Ga0070661_100000025 3300005344 Bacteria 121698
14 Ga0070669_100000281 3300005353 Bacteria 40520
15 Ga0070706_100000189 3300005467 Bacteria 77778
16 Ga0070664_100000019 3300005564 Bacteria 121708
17 Ga0079104_1000399 3300006946 Bacteria 50336
18 Ga0105251_10001148 3300009011 Bacteria 23026
19 Ga0105251_10002863 3300009011 Bacteria 13020
20 Ga0105251_10006545 3300009011 Bacteria 7386
21 Ga0105251_10007264 3300009011 Bacteria 6868
22 Ga0105244_10000401 3300009036 Bacteria 40258
23 Ga0105244_10000838 3300009036 Bacteria 26029
24 Ga0105244_10001855 3300009036 Bacteria 16458
25 Ga0105250_10000083 3300009092 Bacteria 82716
26 Ga0105250_10001735 3300009092 Bacteria 11500
27 Ga0105250_10003924 3300009092 Bacteria 6946
28 Ga0105250_10017355 3300009092 Bacteria 2927
29 Ga0105243_10000803 3300009148 Bacteria 29987
30 Ga0105242_10005652 3300009176 Bacteria 9655
31 Ga0105237_10000093 3300009545 Bacteria 122006
32 Ga0105246_10000024 3300011119 Bacteria 56340
33 Ga0105246_10001044 3300011119 Bacteria 15976
34 Ga0105246_10001977 3300011119 Bacteria 12361
35 Ga0105246_10014107 3300011119 Bacteria 5021
36 Ga0157345_1000226 3300012498 Bacteria 8278
37 Ga0157373_10000282 3300013100 Bacteria 40568
38 Ga0157373_10005519 3300013100 Bacteria 9485
39 Ga0157373_10015901 3300013100 Bacteria 5493
40 Ga0157371_10000053 3300013102 Bacteria 176879
41 Ga0157371_10002597 3300013102 Bacteria 17141
42 Ga0157371_10022490 3300013102 Bacteria 4618
43 Ga0157370_10020348 3300013104 Bacteria 6628
44 Ga0157369_10001011 3300013105 Bacteria 35386
45 Ga0157369_10006385 3300013105 Bacteria 13669
46 Ga0157369_10044213 3300013105 Bacteria 4849
47 Ga0157369_10050202 3300013105 Bacteria 4520
48 Ga0163162_10001387 3300013306 Bacteria 22554
49 Ga0163162_10001412 3300013306 Bacteria 22336
50 Ga0163162_10012279 3300013306 Bacteria 8362
51 Ga0157375_10000210 3300013308 Bacteria 54529
52 Ga0157375_10002364 3300013308 Bacteria 16305
53 Ga0182008_10000240 3300014497 Bacteria 42379
54 Ga0182008_10015568 3300014497 Bacteria 3965
55 Ga0182006_1000221 3300015261 Bacteria 55451
56 Ga0182006_1005037 3300015261 Bacteria 6356
57 Ga0182006_1006745 3300015261 Bacteria 5305
58 Ga0182005_1000389 3300015265 Bacteria 23926
59 Ga0163161_10000714 3300017792 Bacteria 26246
60 Ga0163161_10000833 3300017792 Bacteria 24054
61 Ga0163161_10047543 3300017792 Bacteria 3098
62 Ga0209676_1000015 3300025292 Bacteria 784458
63 Ga0209676_1000041 3300025292 Bacteria 424583
64 Ga0209676_1001196 3300025292 Bacteria 27824
65 Ga0209050_1000030 3300025298 Bacteria 463381
66 Ga0209050_1000061 3300025298 Bacteria 321435
67 Ga0209051_1000012 3300025303 Bacteria 595474
68 Ga0209051_1000222 3300025303 Bacteria 95911
69 Ga0209257_1000143 3300025304 Bacteria 199975
70 Ga0207696_1000091 3300025711 Bacteria 187999
71 Ga0207696_1000204 3300025711 Bacteria 90602
72 Ga0207696_1000921 3300025711 Bacteria 18169
73 Ga0207696_1002098 3300025711 Bacteria 10036
74 Ga0207696_1002304 3300025711 Bacteria 9481
75 Ga0207655_1000047 3300025728 Bacteria 302548
76 Ga0207655_1000116 3300025728 Bacteria 161950
77 Ga0207655_1000137 3300025728 Bacteria 140084
78 Ga0207655_1002053 3300025728 Bacteria 16936
79 Ga0207655_1011161 3300025728 Bacteria 5373
80 Ga0207655_1011183 3300025728 Bacteria 5366
81 Ga0207713_1000382 3300025735 Bacteria 48021
82 Ga0207713_1001154 3300025735 Bacteria 22311
83 Ga0207713_1002423 3300025735 Bacteria 13624
84 Ga0207713_1014397 3300025735 Bacteria 4113
85 Ga0207684_10000069 3300025910 Bacteria 189217
86 Ga0207671_10000261 3300025914 Bacteria 79200
87 Ga0207649_10000097 3300025920 Bacteria 72798
88 Ga0207681_10000209 3300025923 Bacteria 46652
89 Ga0207650_10000205 3300025925 Bacteria 67905
90 Ga0207650_10014511 3300025925 Bacteria 5474
91 Ga0207706_10015655 3300025933 Bacteria 6853
92 Ga0207709_10000061 3300025935 Bacteria 199097
93 Ga0207679_10000045 3300025945 Bacteria 121851
94 Ga0209281_1000091 3300027111 Bacteria 242588
95 Ga0316178_1047147 3300030735 Bacteria 102800
96 Ga0307408_100001450 3300031548 Bacteria 17635
97 Ga0307408_100002064 3300031548 Bacteria 14451
98 Ga0307408_100002160 3300031548 Bacteria 14070
99 Ga0307408_100017523 3300031548 Bacteria 4793
100 Ga0265313_10023246 3300031595 Bacteria 3344
101 Ga0307514_10042123 3300031649 Bacteria 3593
102 Ga0316576_10000065 3300031727 Bacteria 34719
103 Ga0307405_10000070 3300031731 Bacteria 47164
104 Ga0307405_10000201 3300031731 Bacteria 21885
105 Ga0307405_10001278 3300031731 Bacteria 10494
106 Ga0307405_10017166 3300031731 Bacteria 3964
107 Ga0307406_10000331 3300031901 Bacteria 27455
108 Ga0307406_10009801 3300031901 Bacteria 5390
109 Ga0307412_10000498 3300031911 Bacteria 23405
110 Ga0307412_10000607 3300031911 Bacteria 21079
111 Ga0307414_10009928 3300032004 Bacteria 5491
112 Ga0307414_10010451 3300032004 Bacteria 5386
113 Ga0307411_10013022 3300032005 Bacteria 4569
114 Ga0307507_10024174 3300033179 Bacteria 6634
115 Ga0307510_10026609 3300033180 Bacteria 6645
116 Ga0316584_0019810 3300036712 Bacteria 4866
117 Ga0400490_40461 3300038726 Bacteria 59288
118 Ga0400489_18623 3300039093 Bacteria 18374
119 Ga0439438_000743 3300041405 Bacteria 14685
120 Ga0439447_001532 3300041407 Bacteria 8458
121 Ga0439466_0000603 3300041411 Bacteria 13480
122 Ga0439466_0005446 3300041411 Bacteria 4865
123 Ga0439445_0003376 3300042004 Bacteria 3580
124 Ga0439432_000034 3300042006 Bacteria 43880
125 Ga0439432_000112 3300042006 Bacteria 26175
126 Ga0439452_001896 3300042010 Bacteria 8040
127 Ga0439452_002402 3300042010 Bacteria 6938
128 Ga0439452_009907 3300042010 Bacteria 2792
129 Ga0439463_000037 3300042016 Bacteria 27972
130 Ga0439463_001840 3300042016 Bacteria 5508
131 Ga0450898_001106 3300042134 Bacteria 3442
132 Ga0450899_000133 3300042135 Bacteria 7067
133 Ga0450910_000039 3300042147 Bacteria 14900
134 Ga0439446_0000103 3300042156 Bacteria 14504
135 Ga0439446_0005125 3300042156 Bacteria 3356
136 Ga0451577_0004817 3300042876 Bacteria 14095
137 Ga0439440_0000988 3300042993 Bacteria 5016
138 Ga0466969_0005237 3300044656 Bacteria 6905
139 Ga0453683_0015349 3300044673 Bacteria 4961
140 Ga0466966_0006651 3300044684 Bacteria 7658
141 Ga0466961_0001946 3300044693 Bacteria 12868
142 Ga0466959_0004774 3300045049 Bacteria 9139
143 Ga0451576_0000690 3300045051 Bacteria 68707
144 Ga0495627_000379 3300046453 Bacteria 40918
145 Ga0495591_000220 3300046458 Bacteria 56906
146 Ga0495591_002772 3300046458 Bacteria 9461
147 Ga0495653_0026414 3300046463 Bacteria 4656
148 Ga0495650_0027047 3300046471 Bacteria 2657
149 Ga0495605_0011659 3300046474 Bacteria 4891
150 Ga0495584_0007923 3300046491 Bacteria 5524
151 Ga0495607_0000560 3300046501 Bacteria 36227
152 Ga0495607_0008929 3300046501 Bacteria 6825
153 Ga0495583_0000334 3300046506 Bacteria 74547
154 Ga0495583_0000646 3300046506 Bacteria 45997
155 Ga0495606_0000624 3300046507 Bacteria 55778
156 Ga0495606_0001651 3300046507 Bacteria 29034
157 Ga0495606_0002559 3300046507 Bacteria 20874
158 Ga0495606_0016109 3300046507 Bacteria 5720
159 Ga0495610_0001875 3300046512 Bacteria 18165
160 Ga0495610_0003588 3300046512 Bacteria 11991
161 Ga0495620_0000433 3300046515 Bacteria 27937
162 Ga0495620_0002848 3300046515 Bacteria 9935
163 Ga0495631_0016839 3300046518 Bacteria 3472
164 Ga0495632_0000465 3300046519 Bacteria 38556
165 Ga0495637_0000082 3300046520 Bacteria 73771
166 Ga0495643_0010095 3300046522 Bacteria 5825
167 Ga0495654_0000284 3300046530 Bacteria 46097
168 Ga0495654_0002853 3300046530 Bacteria 10852
169 Ga0495609_0000043 3300046538 Bacteria 166590
170 Ga0495611_0001117 3300046648 Bacteria 14116
171 Ga0495611_0001403 3300046648 Bacteria 12021
172 Ga0495625_0000101 3300046660 Bacteria 139139
173 Ga0495661_0000024 3300046665 Bacteria 188844
174 Ga0495661_0000083 3300046665 Bacteria 116027
175 Ga0495623_0020092 3300046679 Bacteria 4318
176 Ga0495649_0001337 3300046694 Bacteria 18724
177 Ga0495604_0001832 3300047317 Bacteria 17306
178 Ga0495676_0000071 3300047321 Bacteria 76592
179 Ga0495680_0018698 3300047322 Bacteria 5872
180 Ga0495679_000291 3300047446 Bacteria 41095
181 Ga0495679_000798 3300047446 Bacteria 20006
182 Ga0495673_0000055 3300047469 Bacteria 247894
183 Ga0495673_0001901 3300047469 Bacteria 15640
184 Ga0495673_0018518 3300047469 Bacteria 3508
185 Ga0495681_0000561 3300047470 Bacteria 28363
186 Ga0495681_0001346 3300047470 Bacteria 18559
187 Ga0495681_0002039 3300047470 Bacteria 14726
188 Ga0495602_0001063 3300048088 Bacteria 26924
189 Ga0495626_0000045 3300048091 Bacteria 164931
190 Ga0496117_0000246 3300048920 Bacteria 102783
191 Ga0496117_0003958 3300048920 Bacteria 16744
192 Ga0496117_0004354 3300048920 Bacteria 15711
193 Ga0496118_0001984 3300048921 Bacteria 29068
194 Ga0496118_0003006 3300048921 Bacteria 21788
195 Ga0496118_0003774 3300048921 Bacteria 18714
196 Ga0496119_0002874 3300048922 Bacteria 18377
197 Ga0496119_0024564 3300048922 Bacteria 4235
198 Ga0496120_0000141 3300048923 Bacteria 120086
199 Ga0496120_0001961 3300048923 Bacteria 22491
200 Ga0496121_0004735 3300048924 Bacteria 17963
201 Ga0496122_0000016 3300048925 Bacteria 443353
202 Ga0496122_0002511 3300048925 Bacteria 25910
203 Ga0496122_0002803 3300048925 Bacteria 23920
204 Ga0496122_0047451 3300048925 Bacteria 3315
205 Ga0496123_0000017 3300048926 Bacteria 415261
206 Ga0496123_0001593 3300048926 Bacteria 30866
207 Ga0496123_0002379 3300048926 Bacteria 23579
208 Ga0496123_0005451 3300048926 Bacteria 12809
209 Ga0496123_0006234 3300048926 Bacteria 11630
210 Ga0496124_0000047 3300048927 Bacteria 285554
211 Ga0496124_0000426 3300048927 Bacteria 75499
212 Ga0496124_0001178 3300048927 Bacteria 40836
213 Ga0496124_0001704 3300048927 Bacteria 31059
214 Ga0496124_0004347 3300048927 Bacteria 16599
215 Ga0496124_0007337 3300048927 Bacteria 11744
216 Ga0496124_0008174 3300048927 Bacteria 10976
217 Ga0496124_0024955 3300048927 Bacteria 5422
218 Ga0496125_0000266 3300048928 Bacteria 107204
219 Ga0496125_0001058 3300048928 Bacteria 42543
220 Ga0496125_0002190 3300048928 Bacteria 26084
221 Ga0496125_0003196 3300048928 Bacteria 20222
222 Ga0496125_0011114 3300048928 Bacteria 9030
223 Ga0496126_0002806 3300048929 Bacteria 22904
224 Ga0496126_0002862 3300048929 Bacteria 22560
225 Ga0496126_0008329 3300048929 Bacteria 11195
226 Ga0496126_0028346 3300048929 Bacteria 5338
227 Ga0496126_0034226 3300048929 Bacteria 4773
228 Ga0501068_0000381 3300049584 Bacteria 22326
229 Ga0501069_0000698 3300049585 Bacteria 15653
230 Ga0501072_0000006 3300049588 Bacteria 245475
231 Ga0501222_000108 3300049662 Bacteria 19450
232 Ga0501083_0001998 3300049744 Bacteria 14037
233 nmdc:mga00v17_1111_c1 3300050491 Bacteria 14149
234 Ga0501084_0000069 3300054114 Bacteria 78641
235 Ga0501082_0000119 3300060353 Bacteria 62681

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046522 Ga0495643_0010095 Ga0495643_0010095_3692_5773 643
2 3300042010 Ga0439452_009907 Ga0439452_009907_16_2487 720
3 3300046471 Ga0495650_0027047 Ga0495650_0027047_20_2500 723
4 3300041411 Ga0439466_0005446 Ga0439466_0005446_2201_4783 739
5 3300031731 Ga0307405_10001278 Ga0307405_100012782 745
6 iso_pu_bacteria 2902682994 2902687793 747
7 3300005467 Ga0070706_100000189 Ga0070706_10000018912 750
8 3300025910 Ga0207684_10000069 Ga0207684_10000069151 750
9 3300025711 Ga0207696_1002098 Ga0207696_10020982 757
10 3300048929 Ga0496126_0028346 Ga0496126_0028346_2173_4830 757
11 3300050491 nmdc:mga00v17_1111_c1 nmdc:mga00v17_1111_c1_11121_13769 757
12 3300048928 Ga0496125_0002190 Ga0496125_0002190_8538_10982 758
13 3300015261 Ga0182006_1000221 Ga0182006_100022117 759
14 3300048928 Ga0496125_0011114 Ga0496125_0011114_3756_6200 760
15 3300005288 Ga0065714_10064559 Ga0065714_100645596 761
16 3300005344 Ga0070661_100000025 Ga0070661_10000002556 761
17 3300005564 Ga0070664_100000019 Ga0070664_10000001957 761
18 3300009036 Ga0105244_10000401 Ga0105244_100004017 761
19 3300009176 Ga0105242_10005652 Ga0105242_100056522 761
20 3300009545 Ga0105237_10000093 Ga0105237_1000009331 761
21 3300011119 Ga0105246_10001977 Ga0105246_100019777 761
22 3300013104 Ga0157370_10020348 Ga0157370_100203483 761
23 3300013308 Ga0157375_10002364 Ga0157375_1000236411 761
24 3300025728 Ga0207655_1000137 Ga0207655_100013730 761
25 3300025914 Ga0207671_10000261 Ga0207671_1000026138 761
26 3300025920 Ga0207649_10000097 Ga0207649_1000009745 761
27 3300025945 Ga0207679_10000045 Ga0207679_1000004557 761
28 3300046458 Ga0495591_002772 Ga0495591_002772_3882_6314 761
29 3300046515 Ga0495620_0002848 Ga0495620_0002848_3558_5984 761
30 3300046694 Ga0495649_0001337 Ga0495649_0001337_13060_15492 761
31 3300048927 Ga0496124_0008174 Ga0496124_0008174_3244_5676 761
32 3300013100 Ga0157373_10000282 Ga0157373_100002826 762
33 3300017792 Ga0163161_10047543 Ga0163161_100475432 762
34 3300046530 Ga0495654_0002853 Ga0495654_0002853_3191_5623 762
35 3300048920 Ga0496117_0004354 Ga0496117_0004354_5836_8496 764
36 3300048921 Ga0496118_0001984 Ga0496118_0001984_25257_27917 764
37 3300048925 Ga0496122_0000016 Ga0496122_0000016_213280_215937 764
38 3300048926 Ga0496123_0000017 Ga0496123_0000017_273541_276198 764
39 3300044656 Ga0466969_0005237 Ga0466969_0005237_3865_6513 765
40 3300044684 Ga0466966_0006651 Ga0466966_0006651_703_3351 765
41 3300044693 Ga0466961_0001946 Ga0466961_0001946_8092_10740 765
42 3300045049 Ga0466959_0004774 Ga0466959_0004774_818_3466 765
43 3300047446 Ga0495679_000291 Ga0495679_000291_9722_12148 766
44 iso_pu_bacteria 2675903420 2677896094 768
45 3300013102 Ga0157371_10002597 Ga0157371_1000259710 769
46 iso_pu_bacteria 2599185303 2599947087 770
47 iso_pu_bacteria 2834028612 2834033459 770
48 iso_pu_bacteria 8055817908 8055821439 770
49 iso_pu_bacteria 8056161164 8056165782 770
50 3300046501 Ga0495607_0008929 Ga0495607_0008929_3353_5923 771
51 3300048925 Ga0496122_0002511 Ga0496122_0002511_14007_16430 771
52 3300048926 Ga0496123_0001593 Ga0496123_0001593_9485_11908 771
53 3300048928 Ga0496125_0001058 Ga0496125_0001058_30639_33062 771
54 iso_pu_bacteria 2860867994 2860870304 771
55 iso_pu_bacteria 8056131705 8056134441 771
56 3300031731 Ga0307405_10000070 Ga0307405_1000007029 772
57 3300042134 Ga0450898_001106 Ga0450898_001106_139_2571 772
58 3300042135 Ga0450899_000133 Ga0450899_000133_2629_5061 772
59 3300047317 Ga0495604_0001832 Ga0495604_0001832_13545_16244 772
60 3300048925 Ga0496122_0002803 Ga0496122_0002803_13596_16028 772
61 3300048926 Ga0496123_0002379 Ga0496123_0002379_12950_15382 772
62 iso_pu_bacteria 2929189879 2929192936 772
63 iso_pu_bacteria 2946027586 2946030542 772
64 iso_pu_bacteria 8054503363 8054506655 772
65 3300048929 Ga0496126_0008329 Ga0496126_0008329_7561_10215 773
66 3300013105 Ga0157369_10001011 Ga0157369_1000101118 774
67 3300013105 Ga0157369_10006385 Ga0157369_1000638512 774
68 3300015265 Ga0182005_1000389 Ga0182005_100038917 774
69 3300036712 Ga0316584_0019810 Ga0316584_0019810_1866_4616 774
70 3300046506 Ga0495583_0000646 Ga0495583_0000646_13161_15593 774
71 3300046512 Ga0495610_0001875 Ga0495610_0001875_3959_6391 774
72 3300046530 Ga0495654_0000284 Ga0495654_0000284_30495_32927 774
73 3300048924 Ga0496121_0004735 Ga0496121_0004735_3453_5885 774
74 iso_pu_bacteria 2599185288 2599880203 774
75 iso_pu_bacteria 2738541294 2738806423 774
76 iso_pu_bacteria 2738541309 2738893783 774
77 iso_pu_bacteria 2946006987 2946010220 774
78 3300005331 Ga0070670_100000270 Ga0070670_10000027014 775
79 3300017792 Ga0163161_10000714 Ga0163161_1000071414 775
80 3300025925 Ga0207650_10000205 Ga0207650_1000020551 775
81 3300046474 Ga0495605_0011659 Ga0495605_0011659_148_2784 775
82 3300046491 Ga0495584_0007923 Ga0495584_0007923_148_2784 775
83 3300046506 Ga0495583_0000334 Ga0495583_0000334_619_3255 775
84 3300046507 Ga0495606_0016109 Ga0495606_0016109_41_2677 775
85 3300046518 Ga0495631_0016839 Ga0495631_0016839_79_2715 775
86 3300046520 Ga0495637_0000082 Ga0495637_0000082_148_2787 775
87 3300046538 Ga0495609_0000043 Ga0495609_0000043_163608_166244 775
88 3300046648 Ga0495611_0001403 Ga0495611_0001403_8448_11084 775
89 3300046660 Ga0495625_0000101 Ga0495625_0000101_106884_109520 775
90 3300046665 Ga0495661_0000024 Ga0495661_0000024_151538_154174 775
91 3300047321 Ga0495676_0000071 Ga0495676_0000071_418_3054 775
92 3300047446 Ga0495679_000798 Ga0495679_000798_148_2784 775
93 3300047469 Ga0495673_0018518 Ga0495673_0018518_289_2925 775
94 3300047470 Ga0495681_0002039 Ga0495681_0002039_10900_13536 775
95 3300048091 Ga0495626_0000045 Ga0495626_0000045_171_2807 775
96 3300009011 Ga0105251_10001148 Ga0105251_1000114811 776
97 3300011119 Ga0105246_10000024 Ga0105246_1000002429 776
98 3300013306 Ga0163162_10001387 Ga0163162_100013878 776
99 3300025735 Ga0207713_1000382 Ga0207713_100038228 776
100 3300046507 Ga0495606_0002559 Ga0495606_0002559_9151_11595 776
101 3300046648 Ga0495611_0001117 Ga0495611_0001117_8537_10981 776
102 3300048927 Ga0496124_0004347 Ga0496124_0004347_7075_9519 776
103 3300048929 Ga0496126_0002806 Ga0496126_0002806_7340_9784 776
104 3300014497 Ga0182008_10015568 Ga0182008_100155682 780
105 3300031548 Ga0307408_100002064 Ga0307408_1000020646 784
106 3300031731 Ga0307405_10000201 Ga0307405_1000020111 784
107 3300031731 Ga0307405_10017166 Ga0307405_100171662 784
108 3300031901 Ga0307406_10000331 Ga0307406_1000033118 784
109 3300031911 Ga0307412_10000498 Ga0307412_1000049815 784
110 3300031911 Ga0307412_10000607 Ga0307412_1000060710 784
111 3300032004 Ga0307414_10009928 Ga0307414_100099281 784
112 3300032004 Ga0307414_10010451 Ga0307414_100104513 784
113 3300049662 Ga0501222_000108 Ga0501222_000108_13491_16076 784
114 3300015261 Ga0182006_1005037 Ga0182006_10050373 786
115 3300042016 Ga0439463_001840 Ga0439463_001840_1600_4179 786
116 3300042993 Ga0439440_0000988 Ga0439440_0000988_1072_3651 786
117 3300047469 Ga0495673_0000055 Ga0495673_0000055_201209_203833 786
118 3300009011 Ga0105251_10002863 Ga0105251_100028632 788
119 3300025735 Ga0207713_1001154 Ga0207713_10011542 788
120 3300046453 Ga0495627_000379 Ga0495627_000379_17234_19804 788
121 3300046458 Ga0495591_000220 Ga0495591_000220_19560_22130 788
122 3300046519 Ga0495632_0000465 Ga0495632_0000465_15123_17693 788
123 3300046665 Ga0495661_0000083 Ga0495661_0000083_21776_24346 788
124 3300047470 Ga0495681_0000561 Ga0495681_0000561_7659_10229 788
125 3300046501 Ga0495607_0000560 Ga0495607_0000560_21348_23930 791
126 3300046515 Ga0495620_0000433 Ga0495620_0000433_13268_15838 791
127 3300046463 Ga0495653_0026414 Ga0495653_0026414_699_3512 792
128 3300046512 Ga0495610_0003588 Ga0495610_0003588_4135_6705 792
129 3300046679 Ga0495623_0020092 Ga0495623_0020092_495_3308 792
130 3300047470 Ga0495681_0001346 Ga0495681_0001346_2060_4630 792
131 3300048088 Ga0495602_0001063 Ga0495602_0001063_803_3616 792
132 3300048927 Ga0496124_0001704 Ga0496124_0001704_10293_12881 793
133 3300041405 Ga0439438_000743 Ga0439438_000743_10938_13532 794
134 3300041407 Ga0439447_001532 Ga0439447_001532_69_2663 794
135 3300041411 Ga0439466_0000603 Ga0439466_0000603_9683_12277 794
136 3300042004 Ga0439445_0003376 Ga0439445_0003376_83_2677 794
137 3300042006 Ga0439432_000112 Ga0439432_000112_13472_16066 794
138 3300042010 Ga0439452_002402 Ga0439452_002402_1266_3860 794
139 3300042147 Ga0450910_000039 Ga0450910_000039_449_3043 794
140 3300042156 Ga0439446_0000103 Ga0439446_0000103_986_3580 794
141 3300031649 Ga0307514_10042123 Ga0307514_100421232 796
142 3300009036 Ga0105244_10001855 Ga0105244_1000185515 797
143 3300013308 Ga0157375_10000210 Ga0157375_1000021030 797
144 3300025728 Ga0207655_1011161 Ga0207655_10111612 797
145 3300031548 Ga0307408_100001450 Ga0307408_1000014509 797
146 3300003791 Ga0055530_10000068 Ga0055530_1000006816 799
147 3300003792 Ga0055540_1000106 Ga0055540_100010661 799
148 3300025292 Ga0209676_1001196 Ga0209676_10011968 799
149 3300025298 Ga0209050_1000061 Ga0209050_1000061265 799
150 3300025303 Ga0209051_1000222 Ga0209051_100022216 799
151 3300047469 Ga0495673_0001901 Ga0495673_0001901_12211_14796 799
152 3300014497 Ga0182008_10000240 Ga0182008_1000024026 800
153 3300046507 Ga0495606_0001651 Ga0495606_0001651_7484_10045 800
154 3300048927 Ga0496124_0000047 Ga0496124_0000047_123825_126404 800
155 3300048927 Ga0496124_0024955 Ga0496124_0024955_1606_4161 800
156 iso_pu_bacteria 2808606385 2808978759 800
157 iso_pu_bacteria 2808606388 2808994491 800
158 iso_pu_bacteria 2852612431 2852614146 800
159 iso_pu_bacteria 2852667396 2852668117 800
160 iso_pu_bacteria 8057160832 8057161757 800
161 iso_pu_bacteria 2808606361 2808855552 802
162 iso_pu_bacteria 2808606376 2808926114 802
163 iso_pu_bacteria 2808606378 2808935611 802
164 iso_pu_bacteria 2808606380 2808948215 802
165 iso_pu_bacteria 2808606383 2808964219 802
166 iso_pu_bacteria 2808606389 2808998945 802
167 iso_pu_bacteria 2945961074 2945964305 802
168 3300042876 Ga0451577_0004817 Ga0451577_0004817_256_2838 803
169 3300049585 Ga0501069_0000698 Ga0501069_0000698_1373_4015 803
170 3300005289 Ga0065704_10074767 Ga0065704_100747674 804
171 3300009011 Ga0105251_10007264 Ga0105251_100072642 804
172 3300009092 Ga0105250_10000083 Ga0105250_1000008348 804
173 3300013306 Ga0163162_10001412 Ga0163162_100014128 804
174 3300017792 Ga0163161_10000833 Ga0163161_1000083313 804
175 3300025711 Ga0207696_1000091 Ga0207696_100009117 804
176 3300025735 Ga0207713_1014397 Ga0207713_10143972 804
177 3300042006 Ga0439432_000034 Ga0439432_000034_31059_33626 804
178 3300046507 Ga0495606_0000624 Ga0495606_0000624_37535_40105 804
179 3300048920 Ga0496117_0000246 Ga0496117_0000246_50981_53551 804
180 3300048920 Ga0496117_0003958 Ga0496117_0003958_5242_7815 804
181 3300048921 Ga0496118_0003006 Ga0496118_0003006_12554_15127 804
182 3300048921 Ga0496118_0003774 Ga0496118_0003774_12546_15119 804
183 3300048922 Ga0496119_0002874 Ga0496119_0002874_7960_10530 804
184 3300048923 Ga0496120_0001961 Ga0496120_0001961_14790_17360 804
185 3300048925 Ga0496122_0047451 Ga0496122_0047451_380_2953 804
186 3300048926 Ga0496123_0005451 Ga0496123_0005451_622_3192 804
187 3300048926 Ga0496123_0006234 Ga0496123_0006234_1165_3738 804
188 3300048927 Ga0496124_0000426 Ga0496124_0000426_50927_53497 804
189 3300048927 Ga0496124_0007337 Ga0496124_0007337_8898_11471 804
190 3300048928 Ga0496125_0000266 Ga0496125_0000266_34345_36915 804
191 3300048928 Ga0496125_0003196 Ga0496125_0003196_3596_6169 804
192 3300048929 Ga0496126_0002862 Ga0496126_0002862_7343_9916 804
193 3300048929 Ga0496126_0034226 Ga0496126_0034226_2029_4599 804
194 3300009011 Ga0105251_10006545 Ga0105251_100065454 805
195 3300025728 Ga0207655_1000047 Ga0207655_100004733 805
196 3300048922 Ga0496119_0024564 Ga0496119_0024564_1373_3976 805
197 3300048923 Ga0496120_0000141 Ga0496120_0000141_20340_22943 805
198 3300048927 Ga0496124_0001178 Ga0496124_0001178_31890_34493 805
199 3300049584 Ga0501068_0000381 Ga0501068_0000381_447_3089 805
200 3300049588 Ga0501072_0000006 Ga0501072_0000006_53808_56450 805
201 3300049744 Ga0501083_0001998 Ga0501083_0001998_9019_11661 805
202 3300054114 Ga0501084_0000069 Ga0501084_0000069_53800_56442 805
203 3300060353 Ga0501082_0000119 Ga0501082_0000119_6226_8868 805
204 iso_pu_bacteria 2738541271 2738691673 805
205 iso_pu_bacteria 2738543016 2739267447 805
206 3300005331 Ga0070670_100022113 Ga0070670_1000221132 806
207 3300025925 Ga0207650_10014511 Ga0207650_100145113 806
208 3300044673 Ga0453683_0015349 Ga0453683_0015349_887_3526 806
209 3300045051 Ga0451576_0000690 Ga0451576_0000690_6538_9177 806
210 iso_pu_bacteria 2913036834 2913036944 806
211 iso_pu_bacteria 8055878733 8055882603 806
212 iso_pu_bacteria 2511231156 2511827826 807
213 iso_pu_bacteria 2515154122 2515680463 807
214 iso_pu_bacteria 2599185155 2599329688 807
215 iso_pu_bacteria 2599185212 2599612773 807
216 iso_pu_bacteria 2599185300 2599933058 807
217 iso_pu_bacteria 2599185305 2599962227 807
218 iso_pu_bacteria 2599185306 2599969033 807
219 iso_pu_bacteria 2599185308 2599980294 807
220 iso_pu_bacteria 2599185314 2600014106 807
221 iso_pu_bacteria 2599185319 2600041146 807
222 iso_pu_bacteria 2599185322 2600059713 807
223 iso_pu_bacteria 2643221650 2644283031 807
224 iso_pu_bacteria 2651869719 2652544454 807
225 iso_pu_bacteria 2675903515 2678266335 807
226 iso_pu_bacteria 2744054620 2745007565 807
227 iso_pu_bacteria 2811994881 2812369226 807
228 iso_pu_bacteria 2825651385 2825654883 807
229 iso_pu_bacteria 2842854478 2842856033 807
230 iso_pu_bacteria 2923519811 2923523311 807
231 iso_pu_bacteria 2923586266 2923589190 807
232 iso_pu_bacteria 2929144301 2929150110 807
233 iso_pu_bacteria 2931369376 2931372444 807
234 iso_pu_bacteria 2988728565 2988731603 807
235 iso_pu_bacteria 3007866637 3007871515 807
236 iso_pu_bacteria 8056143049 8056143362 807
237 iso_pu_bacteria 2600254954 2600446044 808
238 iso_pu_bacteria 2728369097 2729146810 808
239 3300031595 Ga0265313_10023246 Ga0265313_100232461 810
240 iso_pu_bacteria 2738541277 2738723401 810
241 iso_pu_bacteria 2738543019 2739284132 810
242 iso_pu_bacteria 2826581358 2826584724 810
243 iso_pu_bacteria 2842815866 2842816452 810
244 3300005288 Ga0065714_10002305 Ga0065714_1000230517 811
245 3300006946 Ga0079104_1000399 Ga0079104_100039935 811
246 3300011119 Ga0105246_10014107 Ga0105246_100141072 811
247 3300013100 Ga0157373_10005519 Ga0157373_100055197 811
248 3300027111 Ga0209281_1000091 Ga0209281_1000091178 811
249 3300031548 Ga0307408_100002160 Ga0307408_1000021608 811
250 3300031901 Ga0307406_10009801 Ga0307406_100098012 811
251 3300033179 Ga0307507_10024174 Ga0307507_100241742 811
252 3300042156 Ga0439446_0005125 Ga0439446_0005125_685_3279 811
253 3300038726 Ga0400490_40461 Ga0400490_40461_26175_28868 812
254 3300039093 Ga0400489_18623 Ga0400489_18623_10529_13159 812
255 3300009036 Ga0105244_10000838 Ga0105244_100008386 814
256 3300009092 Ga0105250_10001735 Ga0105250_100017355 814
257 3300013102 Ga0157371_10000053 Ga0157371_1000005362 814
258 3300025711 Ga0207696_1000921 Ga0207696_10009214 814
259 3300025728 Ga0207655_1002053 Ga0207655_100205311 814
260 iso_pu_bacteria 2990703756 2990710649 820
261 iso_pu_bacteria 2508501125 2509129931 821
262 3300031727 Ga0316576_10000065 Ga0316576_1000006522 823
263 3300033180 Ga0307510_10026609 Ga0307510_100266095 825
264 iso_pu_bacteria 2599185307 2599974587 826
265 iso_pu_bacteria 2511231010 2511289848 827
266 iso_pu_bacteria 2511231011 2511294350 827
267 iso_pu_bacteria 2600255318 2601798384 827
268 3300025711 Ga0207696_1002304 Ga0207696_10023049 828
269 3300003781 Ga0055536_1005698 Ga0055536_10056985 829
270 3300003791 Ga0055530_10001054 Ga0055530_1000105411 829
271 3300003792 Ga0055540_1000759 Ga0055540_100075911 829
272 3300003794 Ga0055531_10000423 Ga0055531_1000042328 829
273 3300005353 Ga0070669_100000281 Ga0070669_10000028111 829
274 3300009092 Ga0105250_10003924 Ga0105250_100039242 829
275 3300009092 Ga0105250_10017355 Ga0105250_100173552 829
276 3300009148 Ga0105243_10000803 Ga0105243_100008033 829
277 3300011119 Ga0105246_10001044 Ga0105246_100010448 829
278 3300013100 Ga0157373_10015901 Ga0157373_100159012 829
279 3300025292 Ga0209676_1000015 Ga0209676_1000015244 829
280 3300025298 Ga0209050_1000030 Ga0209050_1000030194 829
281 3300025303 Ga0209051_1000012 Ga0209051_1000012435 829
282 3300025304 Ga0209257_1000143 Ga0209257_1000143163 829
283 3300025711 Ga0207696_1000204 Ga0207696_100020438 829
284 3300025728 Ga0207655_1000116 Ga0207655_100011637 829
285 3300025923 Ga0207681_10000209 Ga0207681_1000020921 829
286 3300025933 Ga0207706_10015655 Ga0207706_100156552 829
287 3300025935 Ga0207709_10000061 Ga0207709_10000061109 829
288 3300012498 Ga0157345_1000226 Ga0157345_10002262 830
289 3300013306 Ga0163162_10012279 Ga0163162_100122797 830
290 3300025728 Ga0207655_1011183 Ga0207655_10111834 830
291 3300030735 Ga0316178_1047147 Ga0316178_104714754 830
292 3300042016 Ga0439463_000037 Ga0439463_000037_17697_20351 830
293 3300047322 Ga0495680_0018698 Ga0495680_0018698_1425_4070 830
294 3300003781 Ga0055536_1005458 Ga0055536_10054586 831
295 3300013102 Ga0157371_10022490 Ga0157371_100224901 831
296 3300013105 Ga0157369_10044213 Ga0157369_100442132 831
297 3300013105 Ga0157369_10050202 Ga0157369_100502022 831
298 3300015261 Ga0182006_1006745 Ga0182006_10067452 831
299 3300025292 Ga0209676_1000041 Ga0209676_10000418 831
300 3300025735 Ga0207713_1002423 Ga0207713_100242311 831
301 3300031548 Ga0307408_100017523 Ga0307408_1000175231 831
302 3300032005 Ga0307411_10013022 Ga0307411_100130222 831
303 3300042010 Ga0439452_001896 Ga0439452_001896_224_2881 831

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07724

AAA_2

AAA domain (Cdc48 subfamily)

654

823

0.96

PF02861

Clp_N

Clp amino terminal domain, pathogenicity island component

20

72

0.95

PF10431

ClpB_D2-small

C-terminal, D2-small domain, of ClpB protein

828

908

0.91

PF17871

AAA_lid_9

AAA lid domain

362

468

0.91

PF07728

AAA_5

AAA domain (dynein-related subfamily)

658

800

0.84

PF00004

AAA

ATPase family associated with various cellular activities (AAA)

659

792

0.83

PF00004

AAA

ATPase family associated with various cellular activities (AAA)

222

357

0.74

PF13191

AAA_16

AAA ATPase domain

199

327

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
1jbk-assembly1.cif.gz_A crystal structure of the first nucelotide binding domain of clpb 0.9439 166 357
2p65-assembly1.cif.gz_A crystal structure of the first nucleotide binding domain of chaperone clpb1, putative, (pv089580) from plasmodium vivax 0.9426 167 348
6emw-assembly1.cif.gz_D structure of s.aureus clpc in complex with meca 0.9417 348 409
4fct-assembly1.cif.gz_A crystal structure of the c-terminal domain of clpb 0.9269 556 793
1jbk-assembly1.cif.gz_A crystal structure of the first nucelotide binding domain of clpb 0.9248 166 357
ID Description Score Start End Superfamily
af_A0A1D6K706_96_155_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9909 355 409 1.10.8.60
af_I1KBU6_471_565_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9871 348 409 1.10.8.60
af_I1JXT1_467_561_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9863 348 409 1.10.8.60
af_P0ABH9_351_438_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9781 350 409 1.10.8.60
1r6bX03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9681 350 409 1.10.8.60
ID Description Score Start End GO Terms
AF-H3G6H2-F1-model_v4 ATPase AAA-type core domain-containing protein 0.9893 166 272 GO:0005524
GO:0016887
AF-H3G6H2-F1-model_v4 ATPase AAA-type core domain-containing protein 0.9713 166 272 GO:0005524
GO:0016887
AF-A0A355FKK6-F1-model_v4 ATP-dependent Clp protease ATP-binding subunit ClpC 0.9655 637 730 GO:0005524
GO:0005737
GO:0006508
GO:0008233
GO:0016887
GO:0034605
AF-A0A6D1AH80-F1-model_v4 ATP-dependent chaperone ClpB 0.962 167 262 GO:0005524
GO:0005737
GO:0016887
GO:0034605
AF-A0A6M1STG9-F1-model_v4 AAA domain-containing protein 0.9619 637 727 GO:0005524
GO:0005737
GO:0016887
GO:0034605

Feature Viewer

pLDDT pTM Quality
83.01 0.64 Medium
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Predicted Structure (AlphaFold2)

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