F396011

General Info

Members Datasets Scaffolds Average Seq Length
301 168 270 216

Family's Representative Sequence

Representative Sequence 3300031901|Ga0307406_10102813|Ga0307406_101028132
Length 238
Sequence VPNVDLILGADPGRKRAIRTEPTQRRSTQRLDALLDAAAEIVDETGFERLTTQMVAERAGASIGTVYRYFPDRVAVLHALRERSIRRFRERVADDLERADLQNWWDVVDLALEACASLYRDEPGFSVVQSGRRETAEDSPEPEFALRIAQLIEAEFGLEADDPELRFRLGIAIELGDALISRAFEREPAGDERYLAEAKRIVHDYLAEHLGRARGADAGDWGTALDDALRLRVASRVD

Samples

Sample ID Description Type Environment
1 2643221549 Agromyces sp. Root1464 Isolate Unclassified
2 2643221572 Leifsonia sp. Root60 Isolate Unclassified
3 2643221616 Leifsonia sp. Root227 Isolate Unclassified
4 2643221619 Agromyces sp. Root81 Isolate Unclassified
5 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
6 2643221635 Yonghaparkia sp. Root332 Isolate Unclassified
7 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
8 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
9 2808606372 Agromyces sp. 23-23 Isolate Unclassified
10 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
11 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
12 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
13 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
14 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
15 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
16 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
17 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
18 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
19 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
20 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
21 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
22 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
23 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
24 2928153084 Leifsonia sp. 563 Isolate Unclassified
25 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
26 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
27 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
28 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
29 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
30 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
31 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
32 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
33 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
34 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
35 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
36 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
37 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
38 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
39 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
40 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
41 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
42 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
43 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
44 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
45 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
46 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
47 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
48 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
49 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
50 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
51 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
52 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
53 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
54 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
55 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
56 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
57 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
58 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
59 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
60 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
61 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
62 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
63 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
64 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
65 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
66 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
67 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
68 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
69 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
70 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
76 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
77 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
80 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
81 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
93 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
94 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
95 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
96 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
97 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
98 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
99 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
100 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
101 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
102 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
103 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
104 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
105 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
106 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
107 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
108 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
109 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
110 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
111 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
112 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
113 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
114 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
115 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
116 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
117 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
118 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
119 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
120 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
121 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
122 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
123 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
124 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
125 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
126 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
127 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
128 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
129 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
130 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
131 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
132 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
133 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
147 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
148 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
149 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
150 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
151 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
152 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
153 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
154 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
155 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
156 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
157 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
158 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
159 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
160 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
161 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
162 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
163 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
164 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
165 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
166 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
167 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
168 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.71
Metatranscriptomes 2.99
Isolates 10.3

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.94
Nodule 0
Rhizoplane 6.64
Rhizosphere 65.78
Stem 0
Stem Tuber 0.33
Unclassified 9.3

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10047525 3300001989 Bacteria 1399
2 JGI24735J21928_10000841 3300002067 Bacteria 10938
3 JGI25162J39368_1004982 3300002737 Bacteria 2809
4 JGI25164J39214_1000511 3300002772 Bacteria 18639
5 JGI25165J46597_1000002 3300003214 Bacteria 765387
6 rootH1_10164391 3300003323 Bacteria 3715
7 Ga0055539_1000008 3300003752 Bacteria 537665
8 Ga0055533_1000001 3300003756 Bacteria 1863437
9 Ga0055532_1013232 3300003758 Bacteria 942
10 Ga0055525_1000329 3300003759 Bacteria 36203
11 Ga0055527_1000001 3300003760 Bacteria 850044
12 Ga0055529_1000018 3300003763 Bacteria 344344
13 Ga0055541_1002278 3300003841 Bacteria 3873
14 Ga0065714_10072359 3300005288 Bacteria 3384
15 Ga0065714_10131676 3300005288 Bacteria 1245
16 Ga0070658_10000433 3300005327 Bacteria 36439
17 Ga0070658_10050843 3300005327 Bacteria 3359
18 Ga0070658_10673647 3300005327 Bacteria 898
19 Ga0070670_100736870 3300005331 Bacteria 888
20 Ga0070682_100053144 3300005337 Bacteria 2538
21 Ga0070668_100179477 3300005347 Bacteria 1729
22 Ga0070675_100056587 3300005354 Bacteria 3232
23 Ga0070714_100179226 3300005435 Bacteria 1927
24 Ga0070710_10050589 3300005437 Bacteria 2330
25 Ga0070700_100140193 3300005441 Bacteria 1642
26 Ga0070663_100943631 3300005455 Bacteria 747
27 Ga0070678_100480243 3300005456 Bacteria 1093
28 Ga0068855_100045596 3300005563 Bacteria 5185
29 Ga0068855_100228871 3300005563 Bacteria 2083
30 Ga0068855_100472265 3300005563 Bacteria 1366
31 Ga0068855_100746434 3300005563 Bacteria 1044
32 Ga0068862_100313460 3300005844 Bacteria 1446
33 Ga0075365_10019101 3300006038 Bacteria 4224
34 Ga0075365_10116209 3300006038 Bacteria 1842
35 Ga0075365_10209073 3300006038 Bacteria 1368
36 Ga0075365_10212269 3300006038 Bacteria 1357
37 Ga0075364_10016261 3300006051 Bacteria 4627
38 Ga0075364_10055332 3300006051 Bacteria 2596
39 Ga0157370_10010815 3300013104 Bacteria 9590
40 Ga0157370_10197373 3300013104 Bacteria 1867
41 Ga0157369_10008485 3300013105 Bacteria 11785
42 Ga0157369_10044696 3300013105 Bacteria 4819
43 Ga0157369_10059430 3300013105 Bacteria 4122
44 Ga0157369_10059753 3300013105 Bacteria 4111
45 Ga0157369_10289901 3300013105 Bacteria 1704
46 Ga0157369_10522388 3300013105 Bacteria 1228
47 Ga0157372_10280934 3300013307 Bacteria 1936
48 Ga0157380_10071742 3300014326 Bacteria 2802
49 Ga0197907_10907710 3300020069 Bacteria 1282
50 Ga0206356_10685742 3300020070 Bacteria 832
51 Ga0206355_1528280 3300020076 Bacteria 701
52 Ga0206350_10859360 3300020080 Bacteria 2211
53 Ga0206354_10437386 3300020081 Bacteria 3485
54 Ga0206354_10735844 3300020081 Bacteria 758
55 Ga0206353_10137900 3300020082 Bacteria 8288
56 Ga0206353_10709411 3300020082 Bacteria 981
57 Ga0224712_10175327 3300022467 Bacteria 963
58 Ga0209566_100026 3300025225 Bacteria 367457
59 Ga0209674_100001 3300025226 Bacteria 4013750
60 Ga0209672_100006 3300025228 Bacteria 1004497
61 Ga0209672_110750 3300025228 Bacteria 1220
62 Ga0209147_100707 3300025229 Bacteria 16996
63 Ga0209563_100001 3300025230 Bacteria 4013775
64 Ga0209563_100363 3300025230 Bacteria 16754
65 Ga0207427_100124 3300025231 Bacteria 98217
66 Ga0209437_100501 3300025233 Bacteria 28073
67 Ga0209677_100001 3300025253 Bacteria 4013787
68 Ga0209677_101084 3300025253 Bacteria 12823
69 Ga0209677_115348 3300025253 Bacteria 1012
70 Ga0209148_1000015 3300025254 Bacteria 850103
71 Ga0209129_1029118 3300025258 Bacteria 933
72 Ga0209233_1000001 3300025261 Bacteria 2992747
73 Ga0209455_1000013 3300025272 Bacteria 850103
74 Ga0209455_1002282 3300025272 Bacteria 7544
75 Ga0207692_10013147 3300025898 Bacteria 3583
76 Ga0207705_10000006 3300025909 Bacteria 657147
77 Ga0207657_10440062 3300025919 Bacteria 1023
78 Ga0207650_10803647 3300025925 Bacteria 797
79 Ga0207667_10025556 3300025949 Bacteria 6463
80 Ga0207667_10357468 3300025949 Bacteria 1489
81 Ga0207678_10112463 3300026067 Bacteria 2323
82 Ga0207678_10915845 3300026067 Bacteria 775
83 Ga0207702_10137559 3300026078 Bacteria 2206
84 Ga0207675_100365185 3300026118 Bacteria 1417
85 Ga0207683_10062012 3300026121 Bacteria 3292
86 Ga0268265_10206332 3300028380 Bacteria 1709
87 Ga0307513_10202531 3300031456 Bacteria 1824
88 Ga0307413_10139126 3300031824 Bacteria 1675
89 Ga0307413_10421936 3300031824 Bacteria 1051
90 Ga0307406_10102813 3300031901 Bacteria 1950
91 Ga0307406_10181200 3300031901 Bacteria 1534
92 Ga0307412_10653864 3300031911 Bacteria 897
93 Ga0307409_100076172 3300031995 Bacteria 2689
94 Ga0307409_100571089 3300031995 Bacteria 1113
95 Ga0307409_100951567 3300031995 Bacteria 875
96 Ga0307411_10393673 3300032005 Bacteria 1143
97 Ga0395899_0035096 3300037312 Bacteria 3765
98 Ga0395899_0377203 3300037312 Bacteria 943
99 Ga0395900_0006762 3300037418 Bacteria 11901
100 Ga0395900_0011968 3300037418 Bacteria 8871
101 Ga0395898_0000131 3300037466 Bacteria 192369
102 Ga0395898_0116086 3300037466 Bacteria 2565
103 Ga0395901_0401090 3300038443 Bacteria 1409
104 Ga0439465_0009426 3300041413 Bacteria 3076
105 Ga0466969_0157582 3300044656 Bacteria 1044
106 Ga0466972_0059943 3300044658 Bacteria 1826
107 Ga0466972_0078855 3300044658 Bacteria 1568
108 Ga0466972_0158366 3300044658 Bacteria 1064
109 Ga0466965_0000002 3300044683 Bacteria 297957
110 Ga0466965_0031843 3300044683 Bacteria 2573
111 Ga0466965_0053595 3300044683 Bacteria 2005
112 Ga0466965_0143919 3300044683 Bacteria 1243
113 Ga0466961_0031738 3300044693 Bacteria 3396
114 Ga0466961_0064789 3300044693 Bacteria 2322
115 Ga0466961_0190608 3300044693 Bacteria 1271
116 Ga0466964_0058520 3300044706 Bacteria 1598
117 Ga0466971_0027775 3300044719 Bacteria 2534
118 Ga0466970_0012487 3300044765 Bacteria 4344
119 Ga0466970_0046957 3300044765 Bacteria 2300
120 Ga0466970_0099216 3300044765 Bacteria 1585
121 Ga0466970_0130959 3300044765 Bacteria 1377
122 Ga0466957_0019718 3300044842 Bacteria 3968
123 Ga0466960_0043209 3300044901 Bacteria 2142
124 Ga0466960_0107377 3300044901 Bacteria 1446
125 Ga0466959_0011675 3300045049 Bacteria 6317
126 Ga0466959_0103091 3300045049 Bacteria 2041
127 Ga0466959_0159415 3300045049 Bacteria 1587
128 Ga0466958_0010009 3300045836 Bacteria 5297
129 Ga0495638_0061372 3300046460 Bacteria 2323
130 Ga0495613_0167361 3300046689 Bacteria 1561
131 Ga0496100_0083622 3300048903 Bacteria 2161
132 Ga0496101_0662573 3300048904 Bacteria 824
133 Ga0496102_0028402 3300048905 Bacteria 4996
134 Ga0496102_0124110 3300048905 Bacteria 2413
135 Ga0496103_0020020 3300048906 Bacteria 4018
136 Ga0496103_0125601 3300048906 Bacteria 1636
137 Ga0496104_0094070 3300048907 Bacteria 2867
138 Ga0496104_0520628 3300048907 Bacteria 1100
139 Ga0496104_0762336 3300048907 Bacteria 874
140 Ga0496105_0016409 3300048908 Bacteria 5913
141 Ga0496105_0072175 3300048908 Bacteria 2853
142 Ga0496105_0279123 3300048908 Bacteria 1347
143 Ga0496107_0105186 3300048910 Bacteria 2072
144 Ga0496107_0117188 3300048910 Bacteria 1961
145 Ga0496109_0351596 3300048912 Bacteria 1392
146 Ga0496114_0023993 3300048917 Bacteria 4976
147 Ga0496114_0133614 3300048917 Bacteria 2144
148 Ga0496115_0056578 3300048918 Bacteria 3152
149 Ga0496115_0090724 3300048918 Bacteria 2496
150 Ga0496115_0113669 3300048918 Bacteria 2225
151 Ga0496116_0048336 3300048919 Bacteria 2856
152 Ga0496117_0000346 3300048920 Bacteria 81937
153 Ga0496117_0005139 3300048920 Bacteria 13972
154 Ga0496117_0017989 3300048920 Bacteria 5881
155 Ga0496117_0046324 3300048920 Bacteria 3128
156 Ga0496118_0010057 3300048921 Bacteria 9423
157 Ga0496121_0083785 3300048924 Bacteria 2516
158 Ga0496122_0000360 3300048925 Bacteria 97913
159 Ga0496123_0006269 3300048926 Bacteria 11584
160 Ga0496126_0006333 3300048929 Bacteria 13203
161 Ga0496126_0083800 3300048929 Bacteria 2813
162 Ga0496126_0421206 3300048929 Bacteria 1079
163 Ga0501031_0005949 3300049568 Bacteria 7956
164 Ga0501031_0032616 3300049568 Bacteria 3396
165 Ga0501031_0070329 3300049568 Bacteria 2280
166 Ga0501031_0413082 3300049568 Bacteria 873
167 Ga0501032_0018594 3300049569 Bacteria 4866
168 Ga0501032_0023425 3300049569 Bacteria 4265
169 Ga0501032_0029789 3300049569 Bacteria 3743
170 Ga0501032_0038743 3300049569 Bacteria 3244
171 Ga0501032_0191181 3300049569 Bacteria 1338
172 Ga0501033_0005332 3300049570 Bacteria 10187
173 Ga0501033_0007759 3300049570 Bacteria 8316
174 Ga0501033_0126676 3300049570 Bacteria 1851
175 Ga0501033_0130071 3300049570 Bacteria 1824
176 Ga0501033_0212408 3300049570 Bacteria 1379
177 Ga0501034_0024010 3300049571 Bacteria 6204
178 Ga0501034_0048671 3300049571 Bacteria 4278
179 Ga0501034_0059702 3300049571 Bacteria 3830
180 Ga0501034_0077389 3300049571 Bacteria 3332
181 Ga0501034_0131266 3300049571 Bacteria 2488
182 Ga0501034_0186331 3300049571 Bacteria 2038
183 Ga0501034_0985021 3300049571 Bacteria 727
184 Ga0501036_0009676 3300049572 Bacteria 7931
185 Ga0501036_0030375 3300049572 Bacteria 4564
186 Ga0501036_0034512 3300049572 Bacteria 4279
187 Ga0501036_0341177 3300049572 Bacteria 1251
188 Ga0501037_0003892 3300049573 Bacteria 10834
189 Ga0501037_0027838 3300049573 Bacteria 4176
190 Ga0501037_0104026 3300049573 Bacteria 2047
191 Ga0501037_0113722 3300049573 Bacteria 1948
192 Ga0501037_0126847 3300049573 Bacteria 1831
193 Ga0501038_0004879 3300049574 Bacteria 12461
194 Ga0501038_0024444 3300049574 Bacteria 5390
195 Ga0501038_0055726 3300049574 Bacteria 3395
196 Ga0501038_0092970 3300049574 Bacteria 2524
197 Ga0501038_0189478 3300049574 Bacteria 1656
198 Ga0501038_0793881 3300049574 Bacteria 704
199 Ga0501039_0012184 3300049575 Bacteria 6555
200 Ga0501039_0027244 3300049575 Bacteria 4394
201 Ga0501039_0110510 3300049575 Bacteria 2149
202 Ga0501040_0463167 3300049576 Bacteria 913
203 Ga0501042_0002050 3300049578 Bacteria 12219
204 Ga0501042_0087461 3300049578 Bacteria 2236
205 Ga0501042_0144608 3300049578 Bacteria 1714
206 Ga0501042_0498153 3300049578 Bacteria 884
207 Ga0501043_0025152 3300049579 Bacteria 4671
208 Ga0501043_0064974 3300049579 Bacteria 2865
209 Ga0501043_0094115 3300049579 Bacteria 2355
210 Ga0501043_0134949 3300049579 Bacteria 1933
211 Ga0501043_0322027 3300049579 Bacteria 1178
212 Ga0501046_0002828 3300049580 Bacteria 16169
213 Ga0501046_0023450 3300049580 Bacteria 5077
214 Ga0501047_0003057 3300049581 Bacteria 15867
215 Ga0501047_0033984 3300049581 Bacteria 4922
216 Ga0501047_0138407 3300049581 Bacteria 2314
217 Ga0501047_0214833 3300049581 Bacteria 1780
218 Ga0501047_0222082 3300049581 Bacteria 1745
219 Ga0501047_0377769 3300049581 Bacteria 1251
220 Ga0501047_0556873 3300049581 Bacteria 970
221 Ga0501048_0001710 3300049582 Bacteria 16735
222 Ga0501048_0030481 3300049582 Bacteria 3903
223 Ga0501048_0457502 3300049582 Bacteria 914
224 Ga0501068_0255744 3300049584 Bacteria 1117
225 Ga0501069_0081211 3300049585 Bacteria 1826
226 Ga0501070_0000483 3300049586 Bacteria 36192
227 Ga0501070_0116249 3300049586 Bacteria 2209
228 Ga0501070_0149904 3300049586 Bacteria 1924
229 Ga0501070_0226771 3300049586 Bacteria 1531
230 Ga0501071_0274450 3300049587 Bacteria 1275
231 Ga0501073_0186253 3300049589 Bacteria 1437
232 Ga0501076_0308460 3300049592 Bacteria 1298
233 Ga0501079_0280349 3300049741 Bacteria 1303
234 Ga0501083_0000052 3300049744 Bacteria 84349
235 Ga0501083_0038210 3300049744 Bacteria 3264
236 Ga0501083_0275799 3300049744 Bacteria 1094
237 Ga0501035_0039826 3300049822 Bacteria 4250
238 Ga0501035_0048844 3300049822 Bacteria 3793
239 Ga0501035_0107435 3300049822 Bacteria 2446
240 Ga0501035_0203961 3300049822 Bacteria 1694
241 Ga0501035_0561768 3300049822 Bacteria 934
242 Ga0501044_0099319 3300049823 Bacteria 2929
243 Ga0501044_0161039 3300049823 Bacteria 2221
244 Ga0501044_0620688 3300049823 Bacteria 973
245 Ga0501044_0635488 3300049823 Bacteria 957
246 Ga0501044_0962240 3300049823 Bacteria 726
247 Ga0501045_0009217 3300049824 Bacteria 6899
248 nmdc:mga00v17_528948_c1 3300050491 Bacteria 763
249 nmdc:mga00v17_92880_c1 3300050491 Bacteria 1897
250 nmdc:mga0yw44_173139_c1 3300050492 Bacteria 1418
251 nmdc:mga0yw44_221184_c1 3300050492 Unclassified 1255
252 nmdc:mga0yw44_237684_c1 3300050492 Bacteria 1210
253 Ga0500635_0000013 3300053080 Bacteria 133088
254 Ga0500559_0026849 3300053136 Bacteria 2455
255 Ga0500568_0000026 3300053139 Bacteria 165582
256 Ga0500568_0000174 3300053139 Bacteria 56251
257 Ga0500573_0000023 3300053140 Bacteria 152268
258 Ga0500573_0004369 3300053140 Bacteria 7438
259 Ga0500573_0013873 3300053140 Bacteria 4551
260 Ga0500573_0034499 3300053140 Bacteria 2919
261 Ga0500573_0036752 3300053140 Bacteria 2828
262 Ga0500573_0044290 3300053140 Bacteria 2566
263 Ga0500573_0103409 3300053140 Bacteria 1600
264 Ga0500573_0183886 3300053140 Bacteria 1121
265 Ga0500573_0314116 3300053140 Bacteria 777
266 Ga0500577_0021166 3300053142 Bacteria 2139
267 Ga0500577_0067441 3300053142 Bacteria 1394
268 Ga0500616_0032896 3300053153 Bacteria 2833
269 Ga0501084_0118705 3300054114 Bacteria 2223
270 Ga0501082_0098878 3300060353 Bacteria 2523

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300025919 Ga0207657_10440062 Ga0207657_104400622 173
2 3300053140 Ga0500573_0004369 Ga0500573_0004369_3365_3925 184
3 3300053140 Ga0500573_0034499 Ga0500573_0034499_552_1112 184
4 3300053142 Ga0500577_0021166 Ga0500577_0021166_1312_1872 184
5 3300053142 Ga0500577_0067441 Ga0500577_0067441_319_879 184
6 3300053139 Ga0500568_0000026 Ga0500568_0000026_10497_11165 190
7 3300006038 Ga0075365_10116209 Ga0075365_101162092 200
8 3300050491 nmdc:mga00v17_92880_c1 nmdc:mga00v17_92880_c1_652_1254 200
9 3300050492 nmdc:mga0yw44_221184_c1 nmdc:mga0yw44_221184_c1_200_802 200
10 3300048929 Ga0496126_0006333 Ga0496126_0006333_5313_5930 202
11 3300049569 Ga0501032_0191181 Ga0501032_0191181_703_1314 202
12 3300049579 Ga0501043_0064974 Ga0501043_0064974_957_1568 202
13 3300049744 Ga0501083_0038210 Ga0501083_0038210_1618_2229 202
14 3300053139 Ga0500568_0000174 Ga0500568_0000174_53723_54334 202
15 iso_pu_bacteria 2891326441 2891330096 203
16 iso_pu_bacteria 2643221572 2643875470 204
17 iso_pu_bacteria 2643221669 2644382525 204
18 iso_pu_bacteria 2895660088 2895661560 204
19 3300053140 Ga0500573_0103409 Ga0500573_0103409_756_1382 206
20 3300005563 Ga0068855_100472265 Ga0068855_1004722651 208
21 3300020081 Ga0206354_10735844 Ga0206354_107358441 208
22 3300053153 Ga0500616_0032896 Ga0500616_0032896_1984_2688 208
23 iso_pu_bacteria 2721755702 2723642380 208
24 iso_pu_bacteria 2919443155 2919445928 208
25 iso_pu_bacteria 2935409751 2935412761 208
26 iso_pu_bacteria 2643221549 2643767430 209
27 iso_pu_bacteria 2643221619 2644110651 209
28 iso_pu_bacteria 2643221635 2644198487 209
29 iso_pu_bacteria 2808606372 2808902364 209
30 iso_pu_bacteria 8057345674 8057347937 210
31 3300049592 Ga0501076_0308460 Ga0501076_0308460_181_834 211
32 iso_pu_bacteria 2862993130 2862995806 211
33 iso_pu_bacteria 2904501621 2904502719 211
34 iso_pu_bacteria 2908674828 2908677598 211
35 iso_pu_bacteria 2909074476 2909075170 211
36 iso_pu_bacteria 2919039151 2919040584 211
37 iso_pu_bacteria 2928500415 2928501592 211
38 iso_pu_bacteria 2966924647 2966925061 211
39 3300005331 Ga0070670_100736870 Ga0070670_1007368701 212
40 3300005347 Ga0070668_100179477 Ga0070668_1001794772 212
41 3300005354 Ga0070675_100056587 Ga0070675_1000565873 212
42 3300005441 Ga0070700_100140193 Ga0070700_1001401932 212
43 3300005456 Ga0070678_100480243 Ga0070678_1004802432 212
44 3300005844 Ga0068862_100313460 Ga0068862_1003134602 212
45 3300006038 Ga0075365_10019101 Ga0075365_100191013 212
46 3300014326 Ga0157380_10071742 Ga0157380_100717423 212
47 3300025925 Ga0207650_10803647 Ga0207650_108036471 212
48 3300026067 Ga0207678_10112463 Ga0207678_101124632 212
49 3300026118 Ga0207675_100365185 Ga0207675_1003651852 212
50 3300026121 Ga0207683_10062012 Ga0207683_100620122 212
51 3300028380 Ga0268265_10206332 Ga0268265_102063322 212
52 3300031824 Ga0307413_10139126 Ga0307413_101391262 212
53 3300031901 Ga0307406_10102813 Ga0307406_101028132 212
54 3300031901 Ga0307406_10181200 Ga0307406_101812002 212
55 3300031995 Ga0307409_100076172 Ga0307409_1000761722 212
56 3300031995 Ga0307409_100571089 Ga0307409_1005710892 212
57 3300031995 Ga0307409_100951567 Ga0307409_1009515672 212
58 3300032005 Ga0307411_10393673 Ga0307411_103936731 212
59 3300041413 Ga0439465_0009426 Ga0439465_0009426_1158_1820 212
60 3300048912 Ga0496109_0351596 Ga0496109_0351596_461_1123 212
61 3300050491 nmdc:mga00v17_528948_c1 nmdc:mga00v17_528948_c1_13_651 212
62 3300053140 Ga0500573_0013873 Ga0500573_0013873_1730_2374 212
63 iso_pu_bacteria 2857733635 2857735923 212
64 iso_pu_bacteria 2939657138 2939658316 212
65 3300005327 Ga0070658_10000433 Ga0070658_1000043326 213
66 3300005327 Ga0070658_10673647 Ga0070658_106736471 213
67 3300005563 Ga0068855_100045596 Ga0068855_1000455966 213
68 3300005563 Ga0068855_100228871 Ga0068855_1002288711 213
69 3300006038 Ga0075365_10209073 Ga0075365_102090732 213
70 3300006051 Ga0075364_10016261 Ga0075364_100162612 213
71 3300006051 Ga0075364_10055332 Ga0075364_100553322 213
72 3300013104 Ga0157370_10010815 Ga0157370_100108154 213
73 3300020076 Ga0206355_1528280 Ga0206355_15282801 213
74 3300025909 Ga0207705_10000006 Ga0207705_10000006160 213
75 3300025949 Ga0207667_10025556 Ga0207667_100255564 213
76 3300025949 Ga0207667_10357468 Ga0207667_103574682 213
77 3300044683 Ga0466965_0053595 Ga0466965_0053595_221_880 213
78 3300046460 Ga0495638_0061372 Ga0495638_0061372_279_950 213
79 3300046689 Ga0495613_0167361 Ga0495613_0167361_596_1258 213
80 iso_pu_bacteria 2870622029 2870623830 213
81 iso_pu_bacteria 2966921586 2966922385 213
82 3300048920 Ga0496117_0000346 Ga0496117_0000346_20945_21589 214
83 3300053140 Ga0500573_0000023 Ga0500573_0000023_148178_148822 214
84 iso_pu_bacteria 2643221616 2644095910 214
85 iso_pu_bacteria 2643221632 2644183256 214
86 iso_pu_bacteria 2844841374 2844842318 214
87 iso_pu_bacteria 2884763398 2884765273 214
88 iso_pu_bacteria 2919055335 2919057966 214
89 iso_pu_bacteria 2919523602 2919524359 214
90 iso_pu_bacteria 2928153084 2928156024 214
91 3300003323 rootH1_10164391 rootH1_101643913 215
92 3300005455 Ga0070663_100943631 Ga0070663_1009436311 215
93 3300013105 Ga0157369_10059753 Ga0157369_100597533 215
94 3300026067 Ga0207678_10915845 Ga0207678_109158451 215
95 3300031824 Ga0307413_10421936 Ga0307413_104219362 215
96 3300031911 Ga0307412_10653864 Ga0307412_106538642 215
97 3300037418 Ga0395900_0011968 Ga0395900_0011968_1267_1914 215
98 3300038443 Ga0395901_0401090 Ga0395901_0401090_182_829 215
99 3300044683 Ga0466965_0000002 Ga0466965_0000002_170265_170915 215
100 3300044765 Ga0466970_0046957 Ga0466970_0046957_1395_2042 215
101 3300049568 Ga0501031_0005949 Ga0501031_0005949_982_1629 215
102 3300049568 Ga0501031_0032616 Ga0501031_0032616_1875_2522 215
103 3300049568 Ga0501031_0413082 Ga0501031_0413082_40_690 215
104 3300049569 Ga0501032_0023425 Ga0501032_0023425_2341_2991 215
105 3300049569 Ga0501032_0029789 Ga0501032_0029789_2949_3596 215
106 3300049569 Ga0501032_0038743 Ga0501032_0038743_60_707 215
107 3300049570 Ga0501033_0005332 Ga0501033_0005332_4012_4659 215
108 3300049570 Ga0501033_0007759 Ga0501033_0007759_6886_7533 215
109 3300049570 Ga0501033_0126676 Ga0501033_0126676_326_976 215
110 3300049570 Ga0501033_0130071 Ga0501033_0130071_470_1120 215
111 3300049571 Ga0501034_0024010 Ga0501034_0024010_2577_3224 215
112 3300049571 Ga0501034_0048671 Ga0501034_0048671_982_1629 215
113 3300049571 Ga0501034_0077389 Ga0501034_0077389_1127_1777 215
114 3300049571 Ga0501034_0131266 Ga0501034_0131266_1242_1892 215
115 3300049571 Ga0501034_0186331 Ga0501034_0186331_1179_1829 215
116 3300049571 Ga0501034_0985021 Ga0501034_0985021_21_668 215
117 3300049572 Ga0501036_0009676 Ga0501036_0009676_2650_3297 215
118 3300049572 Ga0501036_0034512 Ga0501036_0034512_337_987 215
119 3300049572 Ga0501036_0341177 Ga0501036_0341177_576_1226 215
120 3300049573 Ga0501037_0027838 Ga0501037_0027838_3470_4117 215
121 3300049573 Ga0501037_0104026 Ga0501037_0104026_238_885 215
122 3300049573 Ga0501037_0113722 Ga0501037_0113722_575_1225 215
123 3300049573 Ga0501037_0126847 Ga0501037_0126847_60_707 215
124 3300049574 Ga0501038_0004879 Ga0501038_0004879_3734_4381 215
125 3300049574 Ga0501038_0024444 Ga0501038_0024444_4111_4761 215
126 3300049574 Ga0501038_0055726 Ga0501038_0055726_2617_3264 215
127 3300049574 Ga0501038_0189478 Ga0501038_0189478_320_970 215
128 3300049575 Ga0501039_0027244 Ga0501039_0027244_863_1510 215
129 3300049575 Ga0501039_0110510 Ga0501039_0110510_447_1097 215
130 3300049576 Ga0501040_0463167 Ga0501040_0463167_85_732 215
131 3300049578 Ga0501042_0002050 Ga0501042_0002050_7774_8424 215
132 3300049578 Ga0501042_0144608 Ga0501042_0144608_179_826 215
133 3300049578 Ga0501042_0498153 Ga0501042_0498153_178_825 215
134 3300049579 Ga0501043_0025152 Ga0501043_0025152_3416_4066 215
135 3300049579 Ga0501043_0094115 Ga0501043_0094115_1589_2236 215
136 3300049579 Ga0501043_0322027 Ga0501043_0322027_132_782 215
137 3300049580 Ga0501046_0002828 Ga0501046_0002828_14903_15550 215
138 3300049581 Ga0501047_0003057 Ga0501047_0003057_3251_3898 215
139 3300049581 Ga0501047_0033984 Ga0501047_0033984_2645_3292 215
140 3300049581 Ga0501047_0138407 Ga0501047_0138407_923_1573 215
141 3300049581 Ga0501047_0214833 Ga0501047_0214833_249_899 215
142 3300049581 Ga0501047_0222082 Ga0501047_0222082_133_783 215
143 3300049581 Ga0501047_0556873 Ga0501047_0556873_303_953 215
144 3300049582 Ga0501048_0001710 Ga0501048_0001710_8255_8902 215
145 3300049582 Ga0501048_0457502 Ga0501048_0457502_151_801 215
146 3300049584 Ga0501068_0255744 Ga0501068_0255744_18_665 215
147 3300049585 Ga0501069_0081211 Ga0501069_0081211_327_974 215
148 3300049586 Ga0501070_0116249 Ga0501070_0116249_1202_1852 215
149 3300049586 Ga0501070_0149904 Ga0501070_0149904_346_993 215
150 3300049587 Ga0501071_0274450 Ga0501071_0274450_115_765 215
151 3300049589 Ga0501073_0186253 Ga0501073_0186253_150_797 215
152 3300049741 Ga0501079_0280349 Ga0501079_0280349_495_1142 215
153 3300049744 Ga0501083_0000052 Ga0501083_0000052_10915_11565 215
154 3300049744 Ga0501083_0275799 Ga0501083_0275799_362_1009 215
155 3300049822 Ga0501035_0039826 Ga0501035_0039826_982_1629 215
156 3300049822 Ga0501035_0048844 Ga0501035_0048844_2282_2929 215
157 3300049822 Ga0501035_0203961 Ga0501035_0203961_983_1630 215
158 3300049823 Ga0501044_0099319 Ga0501044_0099319_189_836 215
159 3300049823 Ga0501044_0161039 Ga0501044_0161039_593_1243 215
160 3300049823 Ga0501044_0620688 Ga0501044_0620688_182_832 215
161 3300049823 Ga0501044_0962240 Ga0501044_0962240_60_707 215
162 3300049824 Ga0501045_0009217 Ga0501045_0009217_1131_1778 215
163 3300050492 nmdc:mga0yw44_173139_c1 nmdc:mga0yw44_173139_c1_347_994 215
164 3300054114 Ga0501084_0118705 Ga0501084_0118705_731_1378 215
165 iso_pu_bacteria 2939660829 2939661042 215
166 3300048925 Ga0496122_0000360 Ga0496122_0000360_54722_55372 216
167 3300048926 Ga0496123_0006269 Ga0496123_0006269_2280_2930 216
168 3300049568 Ga0501031_0070329 Ga0501031_0070329_1322_1975 216
169 3300049569 Ga0501032_0018594 Ga0501032_0018594_27_680 216
170 3300049570 Ga0501033_0212408 Ga0501033_0212408_18_671 216
171 3300049571 Ga0501034_0059702 Ga0501034_0059702_875_1528 216
172 3300049572 Ga0501036_0030375 Ga0501036_0030375_3634_4287 216
173 3300049573 Ga0501037_0003892 Ga0501037_0003892_1929_2582 216
174 3300049574 Ga0501038_0092970 Ga0501038_0092970_27_680 216
175 3300049575 Ga0501039_0012184 Ga0501039_0012184_4007_4660 216
176 3300049578 Ga0501042_0087461 Ga0501042_0087461_358_1011 216
177 3300049579 Ga0501043_0134949 Ga0501043_0134949_875_1528 216
178 3300049580 Ga0501046_0023450 Ga0501046_0023450_1460_2113 216
179 3300049581 Ga0501047_0377769 Ga0501047_0377769_581_1234 216
180 3300049582 Ga0501048_0030481 Ga0501048_0030481_145_798 216
181 3300049822 Ga0501035_0107435 Ga0501035_0107435_1516_2169 216
182 3300049823 Ga0501044_0635488 Ga0501044_0635488_278_931 216
183 3300060353 Ga0501082_0098878 Ga0501082_0098878_236_889 216
184 3300005437 Ga0070710_10050589 Ga0070710_100505892 217
185 3300013105 Ga0157369_10008485 Ga0157369_100084854 217
186 3300025898 Ga0207692_10013147 Ga0207692_100131473 217
187 3300048907 Ga0496104_0762336 Ga0496104_0762336_18_677 217
188 3300048908 Ga0496105_0072175 Ga0496105_0072175_2086_2745 217
189 3300048918 Ga0496115_0090724 Ga0496115_0090724_1689_2348 217
190 3300049574 Ga0501038_0793881 Ga0501038_0793881_32_688 217
191 3300049586 Ga0501070_0226771 Ga0501070_0226771_595_1275 217
192 3300053136 Ga0500559_0026849 Ga0500559_0026849_398_1051 217
193 3300053140 Ga0500573_0036752 Ga0500573_0036752_1490_2146 217
194 3300053140 Ga0500573_0044290 Ga0500573_0044290_1695_2351 217
195 3300053140 Ga0500573_0183886 Ga0500573_0183886_437_1096 217
196 3300053140 Ga0500573_0314116 Ga0500573_0314116_36_695 217
197 3300001989 JGI24739J22299_10047525 JGI24739J22299_100475252 218
198 3300002067 JGI24735J21928_10000841 JGI24735J21928_100008415 218
199 3300002737 JGI25162J39368_1004982 JGI25162J39368_10049822 218
200 3300002772 JGI25164J39214_1000511 JGI25164J39214_10005118 218
201 3300003214 JGI25165J46597_1000002 JGI25165J46597_1000002558 218
202 3300003752 Ga0055539_1000008 Ga0055539_1000008420 218
203 3300003756 Ga0055533_1000001 Ga0055533_1000001650 218
204 3300003758 Ga0055532_1013232 Ga0055532_10132321 218
205 3300003759 Ga0055525_1000329 Ga0055525_100032916 218
206 3300003760 Ga0055527_1000001 Ga0055527_1000001244 218
207 3300003763 Ga0055529_1000018 Ga0055529_1000018252 218
208 3300003841 Ga0055541_1002278 Ga0055541_10022782 218
209 3300005288 Ga0065714_10072359 Ga0065714_100723592 218
210 3300005288 Ga0065714_10131676 Ga0065714_101316761 218
211 3300005327 Ga0070658_10050843 Ga0070658_100508432 218
212 3300005337 Ga0070682_100053144 Ga0070682_1000531441 218
213 3300005435 Ga0070714_100179226 Ga0070714_1001792262 218
214 3300005563 Ga0068855_100746434 Ga0068855_1007464342 218
215 3300006038 Ga0075365_10212269 Ga0075365_102122692 218
216 3300013104 Ga0157370_10197373 Ga0157370_101973731 218
217 3300013105 Ga0157369_10044696 Ga0157369_100446962 218
218 3300013105 Ga0157369_10059430 Ga0157369_100594304 218
219 3300013105 Ga0157369_10289901 Ga0157369_102899011 218
220 3300013105 Ga0157369_10522388 Ga0157369_105223881 218
221 3300013307 Ga0157372_10280934 Ga0157372_102809341 218
222 3300020069 Ga0197907_10907710 Ga0197907_109077102 218
223 3300020070 Ga0206356_10685742 Ga0206356_106857421 218
224 3300020080 Ga0206350_10859360 Ga0206350_108593603 218
225 3300020081 Ga0206354_10437386 Ga0206354_104373863 218
226 3300020082 Ga0206353_10137900 Ga0206353_101379007 218
227 3300020082 Ga0206353_10709411 Ga0206353_107094111 218
228 3300022467 Ga0224712_10175327 Ga0224712_101753271 218
229 3300025225 Ga0209566_100026 Ga0209566_10002673 218
230 3300025226 Ga0209674_100001 Ga0209674_100001651 218
231 3300025228 Ga0209672_100006 Ga0209672_100006732 218
232 3300025228 Ga0209672_110750 Ga0209672_1107502 218
233 3300025229 Ga0209147_100707 Ga0209147_1007077 218
234 3300025230 Ga0209563_100001 Ga0209563_100001651 218
235 3300025230 Ga0209563_100363 Ga0209563_10036316 218
236 3300025231 Ga0207427_100124 Ga0207427_10012448 218
237 3300025233 Ga0209437_100501 Ga0209437_10050113 218
238 3300025253 Ga0209677_100001 Ga0209677_100001651 218
239 3300025253 Ga0209677_101084 Ga0209677_1010848 218
240 3300025253 Ga0209677_115348 Ga0209677_1153482 218
241 3300025254 Ga0209148_1000015 Ga0209148_1000015576 218
242 3300025258 Ga0209129_1029118 Ga0209129_10291181 218
243 3300025261 Ga0209233_1000001 Ga0209233_10000012248 218
244 3300025272 Ga0209455_1000013 Ga0209455_1000013576 218
245 3300025272 Ga0209455_1002282 Ga0209455_10022824 218
246 3300026078 Ga0207702_10137559 Ga0207702_101375593 218
247 3300031456 Ga0307513_10202531 Ga0307513_102025311 218
248 3300037312 Ga0395899_0035096 Ga0395899_0035096_2921_3604 218
249 3300037312 Ga0395899_0377203 Ga0395899_0377203_180_839 218
250 3300037418 Ga0395900_0006762 Ga0395900_0006762_1017_1676 218
251 3300037466 Ga0395898_0000131 Ga0395898_0000131_21546_22205 218
252 3300037466 Ga0395898_0116086 Ga0395898_0116086_188_871 218
253 3300044656 Ga0466969_0157582 Ga0466969_0157582_357_1013 218
254 3300044658 Ga0466972_0059943 Ga0466972_0059943_54_710 218
255 3300044658 Ga0466972_0078855 Ga0466972_0078855_41_697 218
256 3300044658 Ga0466972_0158366 Ga0466972_0158366_76_732 218
257 3300044683 Ga0466965_0031843 Ga0466965_0031843_375_1031 218
258 3300044683 Ga0466965_0143919 Ga0466965_0143919_106_762 218
259 3300044693 Ga0466961_0031738 Ga0466961_0031738_754_1410 218
260 3300044693 Ga0466961_0064789 Ga0466961_0064789_1074_1730 218
261 3300044693 Ga0466961_0190608 Ga0466961_0190608_238_894 218
262 3300044706 Ga0466964_0058520 Ga0466964_0058520_360_1016 218
263 3300044719 Ga0466971_0027775 Ga0466971_0027775_413_1069 218
264 3300044765 Ga0466970_0012487 Ga0466970_0012487_643_1299 218
265 3300044765 Ga0466970_0099216 Ga0466970_0099216_460_1116 218
266 3300044765 Ga0466970_0130959 Ga0466970_0130959_503_1159 218
267 3300044842 Ga0466957_0019718 Ga0466957_0019718_1555_2211 218
268 3300044901 Ga0466960_0043209 Ga0466960_0043209_761_1417 218
269 3300044901 Ga0466960_0107377 Ga0466960_0107377_201_857 218
270 3300045049 Ga0466959_0011675 Ga0466959_0011675_975_1631 218
271 3300045049 Ga0466959_0103091 Ga0466959_0103091_94_750 218
272 3300045049 Ga0466959_0159415 Ga0466959_0159415_68_724 218
273 3300045836 Ga0466958_0010009 Ga0466958_0010009_3063_3719 218
274 3300048903 Ga0496100_0083622 Ga0496100_0083622_287_946 218
275 3300048904 Ga0496101_0662573 Ga0496101_0662573_119_778 218
276 3300048905 Ga0496102_0028402 Ga0496102_0028402_410_1069 218
277 3300048905 Ga0496102_0124110 Ga0496102_0124110_1223_1879 218
278 3300048906 Ga0496103_0020020 Ga0496103_0020020_2018_2677 218
279 3300048906 Ga0496103_0125601 Ga0496103_0125601_883_1545 218
280 3300048907 Ga0496104_0094070 Ga0496104_0094070_90_752 218
281 3300048907 Ga0496104_0520628 Ga0496104_0520628_414_1073 218
282 3300048908 Ga0496105_0016409 Ga0496105_0016409_3665_4324 218
283 3300048908 Ga0496105_0279123 Ga0496105_0279123_673_1335 218
284 3300048910 Ga0496107_0105186 Ga0496107_0105186_1317_1976 218
285 3300048910 Ga0496107_0117188 Ga0496107_0117188_791_1453 218
286 3300048917 Ga0496114_0023993 Ga0496114_0023993_1984_2646 218
287 3300048917 Ga0496114_0133614 Ga0496114_0133614_1366_2025 218
288 3300048918 Ga0496115_0056578 Ga0496115_0056578_528_1187 218
289 3300048918 Ga0496115_0113669 Ga0496115_0113669_1313_1975 218
290 3300048919 Ga0496116_0048336 Ga0496116_0048336_891_1547 218
291 3300048920 Ga0496117_0005139 Ga0496117_0005139_6585_7241 218
292 3300048920 Ga0496117_0017989 Ga0496117_0017989_2720_3376 218
293 3300048920 Ga0496117_0046324 Ga0496117_0046324_978_1634 218
294 3300048921 Ga0496118_0010057 Ga0496118_0010057_5222_5878 218
295 3300048924 Ga0496121_0083785 Ga0496121_0083785_787_1446 218
296 3300048929 Ga0496126_0083800 Ga0496126_0083800_1420_2079 218
297 3300048929 Ga0496126_0421206 Ga0496126_0421206_349_1011 218
298 3300049586 Ga0501070_0000483 Ga0501070_0000483_17034_17693 218
299 3300049822 Ga0501035_0561768 Ga0501035_0561768_212_871 218
300 3300050492 nmdc:mga0yw44_237684_c1 nmdc:mga0yw44_237684_c1_208_873 218
301 3300053080 Ga0500635_0000013 Ga0500635_0000013_31527_32186 218

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

34

80

0.97

PF17928

TetR_C_22

Tetracyclin repressor-like, C-terminal domain

102

210

0.85

PF17918

TetR_C_15

Tetracyclin repressor-like, C-terminal domain

103

206

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
3bni-assembly1.cif.gz_B crystal structure of tetr-family transcriptional regulator from streptomyces coelicolor 0.9069 30 212
3bni-assembly1.cif.gz_A crystal structure of tetr-family transcriptional regulator from streptomyces coelicolor 0.8955 26 213
3bni-assembly1.cif.gz_B crystal structure of tetr-family transcriptional regulator from streptomyces coelicolor 0.8871 30 212
3bni-assembly1.cif.gz_A crystal structure of tetr-family transcriptional regulator from streptomyces coelicolor 0.8812 26 213
7ky1-assembly1.cif.gz_A molecular basis for control of antibiotic production by a bacterial hormones 0.7858 28 209
ID Description Score Start End Superfamily
3whcE01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9636 28 72 1.10.10.60
3whcC01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9594 29 72 1.10.10.60
3whbA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9552 29 72 1.10.10.60
5gpaB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9489 32 72 1.10.10.60
3mvpB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9482 28 70 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A6H3JV55-F1-model_v4 deleted 0.9346 3 216
AF-A0A7K1VPC4-F1-model_v4 TetR family transcriptional regulator 0.9272 1 215 GO:0000976
GO:0003700
AF-A0A4R8UHR5-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9208 24 216 GO:0000976
GO:0003700
AF-A0A6P1J996-F1-model_v4 TetR family transcriptional regulator 0.9203 1 216 GO:0000976
GO:0003700
AF-A0A5B8M304-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9157 3 213 GO:0000976
GO:0003700

Feature Viewer

pLDDT pTM Quality
86.7 0.83 High
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Predicted Structure (AlphaFold2)

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