F395680

General Info

Members Datasets Scaffolds Average Seq Length
301 242 602 379

Family's Representative Sequence

Representative Sequence 3300003354|JGI25160J50197_1009444|JGI25160J50197_10094442
Length 450
Sequence MAPARTLRYAAGPRRVADEAAARGAAGLDAVRARSGRPGRVPTRGFRAVGGTRFPARPVGPQPAELTETVKNWLMGGEDHEAFREMVRTFLAKEVTPYYEQWEKDGIVSRDAWRAAGKQGLLGLAVPEEYGGGGQHDFRYSAVLAEEFTRAGAAGLAVGLHNDIIGPYLTTLGTEEQKRRWLPGFCSGEIITAIAMTEPGAGSDLQGIRTHAEDAGDHWVLNGSKTFISNGILADLVIVVARTTPEGGAHGLSLLVVERGMAGFERGRNLDKIGQKSQDTAELFFHDVRVPKENLLGEVNGAFGHLMTHLAQERMGIAVAGIAGAEHLLEITSSYVKEREAFGRPLAKLQHIRFEIAEMATECAVTRAFLDRCIADHSAGALDAVHASMAKWWATELHKRVADRCLQLHGGYGYMAEYRVARAFTDGRIQTIYGGTTEIMKEIIGRSLLD

Samples

Sample ID Description Type Environment
1 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
5 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
26 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
27 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
28 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
29 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
30 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
31 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
32 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
33 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
34 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
41 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
44 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
45 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
46 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
47 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
48 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
49 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
50 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
51 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
52 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
68 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
70 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
71 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
72 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
73 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
74 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
75 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
76 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
77 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
78 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
79 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
80 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
81 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
82 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
83 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
84 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
85 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
86 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
87 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
88 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
89 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
90 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
91 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
92 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
93 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
94 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
95 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
96 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
97 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
98 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
99 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
100 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
101 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
102 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
103 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
104 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
105 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
106 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
107 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
108 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
109 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
110 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
111 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
112 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
113 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
114 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
115 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
116 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
117 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
118 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
119 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
120 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
121 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
122 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
123 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
124 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
125 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
126 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
127 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
128 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
129 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
130 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
131 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
132 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
133 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
134 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
135 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
136 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
137 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
138 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
139 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
140 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
141 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
142 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
143 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
144 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
145 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
146 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
147 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
148 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
149 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
150 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
151 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
152 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
153 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
154 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
155 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
157 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
158 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
159 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
160 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
161 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
162 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
163 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
164 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
165 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
166 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
167 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
168 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
169 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
170 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
171 2579778521 Frankia torreyi CpI1-S Isolate Unclassified
172 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
173 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
174 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
175 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
176 2619618881 Frankia sp. ACN1ag Isolate Unclassified
177 2619619003 Frankia sp. CpI1-P Isolate Nodule
178 2626541554 Frankia sp. AvcI.1 Isolate Nodule
179 2643221548 Streptomyces sp. Root55 Isolate Unclassified
180 2643221578 Streptomyces sp. Root63 Isolate Unclassified
181 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
182 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
183 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
184 2643221647 Streptomyces sp. Root369 Isolate Unclassified
185 2643221670 Streptomyces sp. Root431 Isolate Unclassified
186 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
187 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
188 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
189 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
190 2643221687 Mycobacterium sp. Root135 Isolate Unclassified
191 2643221715 Mycobacterium sp. Root265 Isolate Unclassified
192 2738541295 Bacillus sp. OK085 Isolate Unclassified
193 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
194 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
195 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
196 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
197 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
198 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
199 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
200 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
201 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
202 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
203 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
204 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
205 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
206 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
207 2862574272 Streptomyces sp. AcE210 Isolate Nodule
208 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
209 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
210 2867369537 Streptomyces sp. Z26 Isolate Unclassified
211 2867428634 Streptomyces sp. RP5T Isolate Unclassified
212 2867475112 Streptomyces sp. TM32 Isolate Unclassified
213 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
214 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
215 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
216 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
217 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
218 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
219 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
220 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
221 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
222 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
223 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
224 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
225 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
226 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
227 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
228 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
229 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
230 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
231 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
232 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
233 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
234 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
235 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
236 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
237 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified
238 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
239 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
240 8054913762 Frankia gtarii Agncl-10 Isolate Nodule
241 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule
242 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 73.75
Metatranscriptomes 0.66
Isolates 25.58

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.63
Nodule 2.33
Rhizoplane 4.32
Rhizosphere 68.77
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25160J50197_1009444 3300003354 Bacteria 3617
2 LJQas_1004009 3300000549 Bacteria 1939
3 JGI24739J22299_10004139 3300001989 Bacteria 5551
4 JGI25406J46586_10002284 3300003203 Bacteria 9041
5 JGI25160J50197_1015506 3300003354 Bacteria 2496
6 Ga0006562J51391_1053037 3300003578 Bacteria 3619
7 Ga0070658_10000362 3300005327 Bacteria 39469
8 Ga0070680_100000303 3300005336 Bacteria 32891
9 Ga0070667_100001330 3300005367 Bacteria 22176
10 Ga0070709_10024665 3300005434 Bacteria 3543
11 Ga0070713_100009974 3300005436 Bacteria 6842
12 Ga0070711_100059652 3300005439 Bacteria 2650
13 Ga0070663_100298684 3300005455 Bacteria 1288
14 Ga0070678_100049223 3300005456 Bacteria 3040
15 Ga0070681_10001225 3300005458 Bacteria 22321
16 Ga0070706_100097405 3300005467 Bacteria 2732
17 Ga0070698_100001250 3300005471 Bacteria 28390
18 Ga0070698_100037589 3300005471 Bacteria 4991
19 Ga0070699_100002348 3300005518 Bacteria 16996
20 Ga0070679_100007012 3300005530 Bacteria 10513
21 Ga0070679_100185360 3300005530 Bacteria 2052
22 Ga0068853_100063172 3300005539 Bacteria 3207
23 Ga0068856_100124677 3300005614 Bacteria 2579
24 Ga0068856_100155555 3300005614 Bacteria 2296
25 Ga0068859_100016320 3300005617 Bacteria 7461
26 Ga0068863_100051211 3300005841 Bacteria 3914
27 Ga0068858_100111832 3300005842 Bacteria 2551
28 Ga0068862_100001688 3300005844 Bacteria 20014
29 Ga0081455_10000026 3300005937 Bacteria 157062
30 Ga0081538_10023331 3300005981 Bacteria 4451
31 Ga0081539_10001113 3300005985 Bacteria 48761
32 Ga0081539_10001914 3300005985 Bacteria 32227
33 Ga0070717_10008843 3300006028 Bacteria 7544
34 Ga0075368_10003172 3300006042 Bacteria 5467
35 Ga0075363_100008220 3300006048 Bacteria 4846
36 Ga0075364_10005780 3300006051 Bacteria 7216
37 Ga0075367_10000160 3300006178 Bacteria 21111
38 Ga0075367_10009402 3300006178 Bacteria 5108
39 Ga0075370_10002980 3300006353 Bacteria 7963
40 Ga0075370_10049911 3300006353 Bacteria 2373
41 Ga0097620_100016319 3300006931 Bacteria 7461
42 Ga0099826_10066429 3300006948 Bacteria 2313
43 Ga0105248_10188339 3300009177 Bacteria 2325
44 Ga0105237_10194284 3300009545 Bacteria 2029
45 Ga0105249_10045060 3300009553 Bacteria 4011
46 Ga0105239_10226542 3300010375 Bacteria 2097
47 Ga0157370_10092147 3300013104 Bacteria 2844
48 Ga0157369_10137798 3300013105 Bacteria 2583
49 Ga0157378_10022992 3300013297 Bacteria 5488
50 Ga0163163_10067755 3300014325 Bacteria 3550
51 Ga0163163_10143798 3300014325 Bacteria 2428
52 Ga0182008_10001540 3300014497 Bacteria 15338
53 Ga0182007_10001088 3300015262 Bacteria 14772
54 Ga0182005_1030832 3300015265 Bacteria 1461
55 Ga0183367_1001 3300015688 Bacteria 1225545
56 Ga0206353_10051367 3300020082 Bacteria 50239
57 Ga0213876_10008445 3300021384 Bacteria 5574
58 Ga0209758_1010598 3300025297 Bacteria 5486
59 Ga0207426_1001595 3300025302 Bacteria 18105
60 Ga0209051_1016799 3300025303 Bacteria 3291
61 Ga0207705_10002639 3300025909 Bacteria 13752
62 Ga0207707_10000518 3300025912 Bacteria 39471
63 Ga0207657_10139497 3300025919 Bacteria 1981
64 Ga0207652_10001743 3300025921 Bacteria 18981
65 Ga0207700_10083104 3300025928 Bacteria 2506
66 Ga0207664_10019835 3300025929 Bacteria 4976
67 Ga0207711_10169610 3300025941 Bacteria 1980
68 Ga0207712_10006157 3300025961 Bacteria 7566
69 Ga0207703_10060275 3300026035 Bacteria 3103
70 Ga0207639_10124941 3300026041 Bacteria 2120
71 Ga0207702_10157952 3300026078 Bacteria 2068
72 Ga0207702_10228671 3300026078 Bacteria 1737
73 Ga0207641_10049462 3300026088 Bacteria 3552
74 Ga0207683_10098603 3300026121 Bacteria 2607
75 Ga0209371_1010954 3300027312 Bacteria 2737
76 Ga0209813_10001378 3300027866 Bacteria 5466
77 Ga0268265_10001318 3300028380 Bacteria 21284
78 Ga0268256_1011953 3300030500 Bacteria 2712
79 Ga0307512_10031809 3300030522 Bacteria 4564
80 Ga0316183_1153933 3300030742 Bacteria 1315
81 Ga0265340_10000924 3300031247 Bacteria 16685
82 Ga0265327_10000001 3300031251 Bacteria 894475
83 Ga0307513_10065086 3300031456 Bacteria 3836
84 Ga0307513_10076825 3300031456 Bacteria 3461
85 Ga0307508_10003585 3300031616 Bacteria 15626
86 Ga0307514_10001738 3300031649 Bacteria 24956
87 Ga0307514_10035730 3300031649 Bacteria 3953
88 Ga0307516_10010423 3300031730 Bacteria 10220
89 Ga0307414_10080434 3300032004 Bacteria 2383
90 Ga0307415_100042278 3300032126 Bacteria 3032
91 Ga0307510_10179172 3300033180 Bacteria 1685
92 Ga0395900_0087133 3300037418 Bacteria 3209
93 Ga0395898_0005017 3300037466 Bacteria 14369
94 Ga0395898_0009116 3300037466 Bacteria 10451
95 Ga0395905_0171324 3300037471 Bacteria 2039
96 Ga0395905_0219206 3300037471 Bacteria 1781
97 Ga0395901_0010675 3300038443 Bacteria 9311
98 Ga0436365_1609896 3300039437 Bacteria 15156
99 Ga0451853_2012385 3300041512 Bacteria 3159
100 Ga0439448_0007679 3300042005 Bacteria 3134
101 Ga0439455_0001000 3300042012 Bacteria 4444
102 Ga0450903_000358 3300042138 Bacteria 10027
103 Ga0439458_0000892 3300042157 Bacteria 7701
104 Ga0466965_0001449 3300044683 Bacteria 9580
105 Ga0466960_0000278 3300044901 Bacteria 17801
106 Ga0495617_053205 3300046452 Bacteria 1344
107 Ga0495603_0000245 3300046455 Bacteria 28262
108 Ga0495603_0000785 3300046455 Bacteria 18108
109 Ga0495603_0002976 3300046455 Bacteria 10015
110 Ga0495629_0013626 3300046459 Bacteria 5867
111 Ga0495638_0018941 3300046460 Bacteria 4561
112 Ga0495638_0086396 3300046460 Bacteria 1896
113 Ga0495638_0156437 3300046460 Bacteria 1318
114 Ga0495582_0134577 3300046473 Bacteria 1398
115 Ga0495605_0013812 3300046474 Bacteria 4437
116 Ga0495639_0014177 3300046475 Bacteria 3450
117 Ga0495662_0016005 3300046476 Bacteria 3638
118 Ga0495662_0029127 3300046476 Bacteria 2666
119 Ga0495662_0058980 3300046476 Bacteria 1853
120 Ga0495594_0034202 3300046499 Bacteria 2764
121 Ga0495607_0032873 3300046501 Bacteria 3161
122 Ga0495606_0045903 3300046507 Bacteria 2891
123 Ga0495616_0000122 3300046513 Bacteria 67299
124 Ga0495616_0003748 3300046513 Bacteria 9698
125 Ga0495618_0061004 3300046514 Bacteria 2391
126 Ga0495620_0021254 3300046515 Bacteria 3154
127 Ga0495628_0194504 3300046516 Bacteria 1530
128 Ga0495630_0103874 3300046517 Bacteria 2150
129 Ga0495643_0002977 3300046522 Bacteria 12810
130 Ga0495663_0006255 3300046525 Bacteria 3287
131 Ga0495654_0001448 3300046530 Bacteria 16298
132 Ga0495640_0082385 3300046533 Bacteria 2136
133 Ga0495609_0027589 3300046538 Bacteria 2594
134 Ga0495645_0065683 3300046543 Bacteria 2625
135 Ga0495633_0052495 3300046558 Bacteria 1920
136 Ga0495667_0080103 3300046559 Bacteria 2123
137 Ga0495668_0001047 3300046616 Bacteria 29341
138 Ga0495668_0002477 3300046616 Bacteria 15159
139 Ga0495668_0005325 3300046616 Bacteria 8782
140 Ga0495668_0008418 3300046616 Bacteria 6446
141 Ga0495634_0082190 3300046642 Bacteria 2105
142 Ga0495611_0007798 3300046648 Bacteria 4546
143 Ga0495611_0009570 3300046648 Bacteria 4094
144 Ga0495625_0000093 3300046660 Bacteria 145874
145 Ga0495625_0075023 3300046660 Bacteria 2367
146 Ga0495635_0024260 3300046663 Bacteria 4228
147 Ga0495635_0107655 3300046663 Bacteria 1904
148 Ga0495588_0007521 3300046674 Bacteria 4961
149 Ga0495657_0004495 3300046675 Bacteria 11147
150 Ga0495657_0015003 3300046675 Bacteria 5682
151 Ga0495657_0183149 3300046675 Bacteria 1284
152 Ga0495623_0039694 3300046679 Bacteria 3007
153 Ga0495646_0054094 3300046680 Bacteria 2416
154 Ga0495613_0005570 3300046689 Bacteria 9454
155 Ga0495613_0014464 3300046689 Bacteria 5855
156 Ga0495624_0037598 3300046690 Bacteria 3112
157 Ga0495670_0030179 3300046691 Bacteria 2693
158 Ga0495649_0076914 3300046694 Bacteria 1786
159 Ga0495589_0007335 3300046794 Bacteria 5777
160 Ga0495589_0021685 3300046794 Bacteria 3282
161 Ga0495589_0045296 3300046794 Bacteria 2185
162 Ga0495604_0002227 3300047317 Bacteria 15528
163 Ga0495604_0050741 3300047317 Bacteria 3220
164 Ga0495636_0005638 3300047318 Bacteria 4910
165 Ga0495636_0013168 3300047318 Bacteria 3281
166 Ga0495636_0016331 3300047318 Bacteria 2964
167 Ga0495636_0038609 3300047318 Bacteria 1976
168 Ga0495676_0009836 3300047321 Bacteria 8690
169 Ga0495676_0098461 3300047321 Bacteria 2169
170 Ga0495676_0109831 3300047321 Bacteria 2025
171 Ga0495676_0137333 3300047321 Bacteria 1756
172 Ga0495680_0059188 3300047322 Bacteria 2959
173 Ga0495680_0116940 3300047322 Bacteria 1971
174 Ga0495687_014167 3300047443 Bacteria 4121
175 Ga0495675_0014771 3300047444 Bacteria 4936
176 Ga0495675_0041645 3300047444 Bacteria 2927
177 Ga0495685_007168 3300047447 Bacteria 3673
178 Ga0495685_011025 3300047447 Bacteria 3040
179 Ga0495681_0042071 3300047470 Bacteria 2214
180 Ga0495686_0004731 3300047472 Bacteria 11021
181 Ga0495686_0038967 3300047472 Bacteria 3038
182 Ga0495614_0000150 3300048089 Bacteria 25401
183 Ga0495614_0003531 3300048089 Bacteria 7005
184 Ga0495614_0053873 3300048089 Bacteria 1725
185 Ga0496102_0000391 3300048905 Bacteria 51600
186 Ga0496103_0000333 3300048906 Bacteria 43013
187 Ga0496104_0165075 3300048907 Bacteria 2123
188 Ga0496108_0084359 3300048911 Bacteria 2696
189 Ga0496108_0209686 3300048911 Bacteria 1691
190 Ga0496109_0010628 3300048912 Bacteria 7874
191 Ga0496109_0163282 3300048912 Bacteria 2087
192 Ga0496110_0037690 3300048913 Bacteria 4203
193 Ga0496110_0047838 3300048913 Bacteria 3747
194 Ga0496111_0114048 3300048914 Bacteria 1992
195 Ga0496111_0226411 3300048914 Bacteria 1389
196 Ga0496112_0018256 3300048915 Bacteria 6604
197 Ga0496115_0021631 3300048918 Bacteria 4971
198 Ga0496116_0046344 3300048919 Bacteria 2934
199 Ga0496117_0000749 3300048920 Bacteria 51109
200 Ga0496118_0000799 3300048921 Bacteria 50307
201 Ga0495678_028710 3300049459 Bacteria 2344
202 Ga0501032_0050497 3300049569 Bacteria 2805
203 Ga0501034_0016240 3300049571 Bacteria 7640
204 Ga0501034_0025106 3300049571 Bacteria 6065
205 Ga0501037_0101424 3300049573 Bacteria 2077
206 Ga0501070_0186159 3300049586 Bacteria 1708
207 Ga0501070_0189297 3300049586 Bacteria 1692
208 Ga0501035_0108390 3300049822 Bacteria 2435
209 nmdc:mga03n38_31205_c1 3300050490 Bacteria 2246
210 nmdc:mga03n38_33135_c1 3300050490 Bacteria 2195
211 nmdc:mga00v17_18790_c1 3300050491 Bacteria 3933
212 nmdc:mga0yw44_8909_c1 3300050492 Bacteria 4493
213 nmdc:mga06z11_18904_c1 3300050494 Bacteria 3157
214 nmdc:mga06z11_623_c1 3300050494 Bacteria 12888
215 nmdc:mga07m45_1648_c1 3300050496 Bacteria 10283
216 Ga0500592_000631 3300053116 Bacteria 5763
217 Ga0500592_001905 3300053116 Bacteria 3353
218 Ga0500592_003602 3300053116 Bacteria 2472
219 Ga0500604_0002547 3300053151 Bacteria 4973
220 Ga0500604_0008437 3300053151 Bacteria 2734
221 Ga0500627_0000340 3300053158 Bacteria 12663
222 Ga0500627_0000454 3300053158 Bacteria 11112
223 Ga0500627_0001102 3300053158 Bacteria 7387
224 Ga0500611_005744 3300053727 Bacteria 1765
225 2523384304 2523231044 Bacteria 6434991
226 2523387410 2523231044 Bacteria 6434991
227 2552105596 2551306166 Bacteria 9731570
228 2554260815 2554235005 Bacteria 6457341
229 2579857523 2579778521 Bacteria 7624758
230 2585301970 2582581312 Bacteria 7308206
231 2585304036 2582581313 Bacteria 10042643
232 2616699001 2616644814 Bacteria 11555299
233 2616901290 2616644941 Bacteria 8510691
234 2619858385 2619618881 Bacteria 7521104
235 2620353400 2619619003 Bacteria 7619552
236 2626637719 2626541554 Bacteria 7741902
237 2643762332 2643221548 Bacteria 8053412
238 2643901734 2643221578 Bacteria 9213798
239 2643946130 2643221587 Bacteria 7586415
240 2644013927 2643221601 Bacteria 7493239
241 2644174512 2643221631 Bacteria 8168043
242 2644263804 2643221647 Bacteria 10741251
243 2644387902 2643221670 Bacteria 6497041
244 2644407880 2643221673 Bacteria 9196637
245 2644432919 2643221677 Bacteria 7584031
246 2644441263 2643221678 Bacteria 9540101
247 2644458889 2643221682 Bacteria 6743283
248 2644487935 2643221687 Bacteria 6500351
249 2644639176 2643221715 Bacteria 6671032
250 2738817377 2738541295 Bacteria 5730091
251 2738892713 2738541308 Bacteria 7020677
252 2753076060 2751185734 Bacteria 8863695
253 2768645366 2767802112 Bacteria 6465194
254 2776373210 2775506925 Bacteria 7237746
255 2785373124 2784746768 Bacteria 10036182
256 2786674911 2786546132 Bacteria 10419719
257 2804849100 2802429296 Bacteria 7227771
258 2808914967 2808606375 Bacteria 9466072
259 2811843315 2808606982 Bacteria 7791042
260 2816504016 2816332139 Bacteria 9138787
261 2819696258 2818991463 Bacteria 7948711
262 2862184271 2862178590 Bacteria 8583590
263 2862283110 2862281513 Bacteria 9621493
264 2862295040 2862290372 Bacteria 7471434
265 2862576256 2862574272 Bacteria 10567477
266 2862580237 2862574272 Bacteria 10567477
267 2863070789 2863067949 Bacteria 8541735
268 2866555263 2866552031 Bacteria 5824618
269 2867374862 2867369537 Bacteria 6501581
270 2867430798 2867428634 Bacteria 9590268
271 2867476029 2867475112 Bacteria 6909112
272 2873152681 2873151551 Bacteria 8625867
273 2875397870 2875391855 Bacteria 7600475
274 2877677773 2877676314 Bacteria 9512378
275 2918507638 2918501144 Bacteria 8668083
276 2935392914 2935390628 Bacteria 7043367
277 2946046621 2946045630 Bacteria 8527308
278 2954382559 2954380949 Bacteria 10050426
279 2954680491 2954673503 Bacteria 9685905
280 2954683661 2954682443 Bacteria 9862841
281 2954693358 2954691527 Bacteria 10720516
282 2954708452 2954701450 Bacteria 10834262
283 2954713064 2954711539 Bacteria 10867210
284 2954723024 2954721474 Bacteria 10456478
285 2954738805 2954731030 Bacteria 10243860
286 2954741933 2954740390 Bacteria 10229294
287 2954757665 2954749733 Bacteria 10366972
288 2954760910 2954759201 Bacteria 9358192
289 2966599601 2966598605 Bacteria 7676064
290 2990094029 2990088156 Bacteria 6657676
291 2997455163 2997451912 Bacteria 8492419
292 2997603661 2997600082 Bacteria 9896405
293 3006486688 3006486233 Bacteria 8157040
294 8025416353 8025413630 Bacteria 7014048
295 8025481943 8025478263 Bacteria 8209203
296 8033688791 8033684223 Bacteria 6906479
297 8053946360 8053945823 Bacteria 8962862
298 8054166227 8054160619 Bacteria 7783213
299 8054917732 8054913762 Bacteria 7713009
300 8055158374 8055157932 Bacteria 6429399
301 8056669474 8056667051 Bacteria 6953971
302 JGI25160J50197_1009444
303 LJQas_1004009
304 JGI24739J22299_10004139
305 JGI25406J46586_10002284
306 JGI25160J50197_1015506
307 Ga0006562J51391_1053037
308 Ga0070658_10000362
309 Ga0070680_100000303
310 Ga0070667_100001330
311 Ga0070709_10024665
312 Ga0070713_100009974
313 Ga0070711_100059652
314 Ga0070663_100298684
315 Ga0070678_100049223
316 Ga0070681_10001225
317 Ga0070706_100097405
318 Ga0070698_100001250
319 Ga0070698_100037589
320 Ga0070699_100002348
321 Ga0070679_100007012
322 Ga0070679_100185360
323 Ga0068853_100063172
324 Ga0068856_100124677
325 Ga0068856_100155555
326 Ga0068859_100016320
327 Ga0068863_100051211
328 Ga0068858_100111832
329 Ga0068862_100001688
330 Ga0081455_10000026
331 Ga0081538_10023331
332 Ga0081539_10001113
333 Ga0081539_10001914
334 Ga0070717_10008843
335 Ga0075368_10003172
336 Ga0075363_100008220
337 Ga0075364_10005780
338 Ga0075367_10000160
339 Ga0075367_10009402
340 Ga0075370_10002980
341 Ga0075370_10049911
342 Ga0097620_100016319
343 Ga0099826_10066429
344 Ga0105248_10188339
345 Ga0105237_10194284
346 Ga0105249_10045060
347 Ga0105239_10226542
348 Ga0157370_10092147
349 Ga0157369_10137798
350 Ga0157378_10022992
351 Ga0163163_10067755
352 Ga0163163_10143798
353 Ga0182008_10001540
354 Ga0182007_10001088
355 Ga0182005_1030832
356 Ga0183367_1001
357 Ga0206353_10051367
358 Ga0213876_10008445
359 Ga0209758_1010598
360 Ga0207426_1001595
361 Ga0209051_1016799
362 Ga0207705_10002639
363 Ga0207707_10000518
364 Ga0207657_10139497
365 Ga0207652_10001743
366 Ga0207700_10083104
367 Ga0207664_10019835
368 Ga0207711_10169610
369 Ga0207712_10006157
370 Ga0207703_10060275
371 Ga0207639_10124941
372 Ga0207702_10157952
373 Ga0207702_10228671
374 Ga0207641_10049462
375 Ga0207683_10098603
376 Ga0209371_1010954
377 Ga0209813_10001378
378 Ga0268265_10001318
379 Ga0268256_1011953
380 Ga0307512_10031809
381 Ga0316183_1153933
382 Ga0265340_10000924
383 Ga0265327_10000001
384 Ga0307513_10065086
385 Ga0307513_10076825
386 Ga0307508_10003585
387 Ga0307514_10001738
388 Ga0307514_10035730
389 Ga0307516_10010423
390 Ga0307414_10080434
391 Ga0307415_100042278
392 Ga0307510_10179172
393 Ga0395900_0087133
394 Ga0395898_0005017
395 Ga0395898_0009116
396 Ga0395905_0171324
397 Ga0395905_0219206
398 Ga0395901_0010675
399 Ga0436365_1609896
400 Ga0451853_2012385
401 Ga0439448_0007679
402 Ga0439455_0001000
403 Ga0450903_000358
404 Ga0439458_0000892
405 Ga0466965_0001449
406 Ga0466960_0000278
407 Ga0495617_053205
408 Ga0495603_0000245
409 Ga0495603_0000785
410 Ga0495603_0002976
411 Ga0495629_0013626
412 Ga0495638_0018941
413 Ga0495638_0086396
414 Ga0495638_0156437
415 Ga0495582_0134577
416 Ga0495605_0013812
417 Ga0495639_0014177
418 Ga0495662_0016005
419 Ga0495662_0029127
420 Ga0495662_0058980
421 Ga0495594_0034202
422 Ga0495607_0032873
423 Ga0495606_0045903
424 Ga0495616_0000122
425 Ga0495616_0003748
426 Ga0495618_0061004
427 Ga0495620_0021254
428 Ga0495628_0194504
429 Ga0495630_0103874
430 Ga0495643_0002977
431 Ga0495663_0006255
432 Ga0495654_0001448
433 Ga0495640_0082385
434 Ga0495609_0027589
435 Ga0495645_0065683
436 Ga0495633_0052495
437 Ga0495667_0080103
438 Ga0495668_0001047
439 Ga0495668_0002477
440 Ga0495668_0005325
441 Ga0495668_0008418
442 Ga0495634_0082190
443 Ga0495611_0007798
444 Ga0495611_0009570
445 Ga0495625_0000093
446 Ga0495625_0075023
447 Ga0495635_0024260
448 Ga0495635_0107655
449 Ga0495588_0007521
450 Ga0495657_0004495
451 Ga0495657_0015003
452 Ga0495657_0183149
453 Ga0495623_0039694
454 Ga0495646_0054094
455 Ga0495613_0005570
456 Ga0495613_0014464
457 Ga0495624_0037598
458 Ga0495670_0030179
459 Ga0495649_0076914
460 Ga0495589_0007335
461 Ga0495589_0021685
462 Ga0495589_0045296
463 Ga0495604_0002227
464 Ga0495604_0050741
465 Ga0495636_0005638
466 Ga0495636_0013168
467 Ga0495636_0016331
468 Ga0495636_0038609
469 Ga0495676_0009836
470 Ga0495676_0098461
471 Ga0495676_0109831
472 Ga0495676_0137333
473 Ga0495680_0059188
474 Ga0495680_0116940
475 Ga0495687_014167
476 Ga0495675_0014771
477 Ga0495675_0041645
478 Ga0495685_007168
479 Ga0495685_011025
480 Ga0495681_0042071
481 Ga0495686_0004731
482 Ga0495686_0038967
483 Ga0495614_0000150
484 Ga0495614_0003531
485 Ga0495614_0053873
486 Ga0496102_0000391
487 Ga0496103_0000333
488 Ga0496104_0165075
489 Ga0496108_0084359
490 Ga0496108_0209686
491 Ga0496109_0010628
492 Ga0496109_0163282
493 Ga0496110_0037690
494 Ga0496110_0047838
495 Ga0496111_0114048
496 Ga0496111_0226411
497 Ga0496112_0018256
498 Ga0496115_0021631
499 Ga0496116_0046344
500 Ga0496117_0000749
501 Ga0496118_0000799
502 Ga0495678_028710
503 Ga0501032_0050497
504 Ga0501034_0016240
505 Ga0501034_0025106
506 Ga0501037_0101424
507 Ga0501070_0186159
508 Ga0501070_0189297
509 Ga0501035_0108390
510 nmdc:mga03n38_31205_c1
511 nmdc:mga03n38_33135_c1
512 nmdc:mga00v17_18790_c1
513 nmdc:mga0yw44_8909_c1
514 nmdc:mga06z11_18904_c1
515 nmdc:mga06z11_623_c1
516 nmdc:mga07m45_1648_c1
517 Ga0500592_000631
518 Ga0500592_001905
519 Ga0500592_003602
520 Ga0500604_0002547
521 Ga0500604_0008437
522 Ga0500627_0000340
523 Ga0500627_0000454
524 Ga0500627_0001102
525 Ga0500611_005744
526 2523384304
527 2523387410
528 2552105596
529 2554260815
530 2579857523
531 2585301970
532 2585304036
533 2616699001
534 2616901290
535 2619858385
536 2620353400
537 2626637719
538 2643762332
539 2643901734
540 2643946130
541 2644013927
542 2644174512
543 2644263804
544 2644387902
545 2644407880
546 2644432919
547 2644441263
548 2644458889
549 2644487935
550 2644639176
551 2738817377
552 2738892713
553 2753076060
554 2768645366
555 2776373210
556 2785373124
557 2786674911
558 2804849100
559 2808914967
560 2811843315
561 2816504016
562 2819696258
563 2862184271
564 2862283110
565 2862295040
566 2862576256
567 2862580237
568 2863070789
569 2866555263
570 2867374862
571 2867430798
572 2867476029
573 2873152681
574 2875397870
575 2877677773
576 2918507638
577 2935392914
578 2946046621
579 2954382559
580 2954680491
581 2954683661
582 2954693358
583 2954708452
584 2954713064
585 2954723024
586 2954738805
587 2954741933
588 2954757665
589 2954760910
590 2966599601
591 2990094029
592 2997455163
593 2997603661
594 3006486688
595 8025416353
596 8025481943
597 8033688791
598 8053946360
599 8054166227
600 8054917732
601 8055158374
602 8056669474

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00441

Acyl-CoA_dh_1

Acyl-CoA dehydrogenase, C-terminal domain

302

449

0.98

PF02771

Acyl-CoA_dh_N

Acyl-CoA dehydrogenase, N-terminal domain

77

189

0.98

PF02770

Acyl-CoA_dh_M

Acyl-CoA dehydrogenase, middle domain

193

288

0.94

PF08028

Acyl-CoA_dh_2

Acyl-CoA dehydrogenase, C-terminal domain

315

438

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
2pg0-assembly1.cif.gz_A crystal structure of acyl-coa dehydrogenase from geobacillus kaustophilus 0.9813 2 382
2pg0-assembly1.cif.gz_A crystal structure of acyl-coa dehydrogenase from geobacillus kaustophilus 0.9787 2 382
3r7k-assembly1.cif.gz_D crystal structure of a probable acyl coa dehydrogenase from mycobacterium abscessus atcc 19977 / dsm 44196 0.9654 4 380
3oib-assembly1.cif.gz_A crystal structure of a putative acyl-coa dehydrogenase from mycobacterium smegmatis, iodide soak 0.9632 3 381
5lnx-assembly2.cif.gz_G crystal structure of mmgc, an acyl-coa dehydrogenase from bacillus subtilis. 0.9622 13 380
ID Description Score Start End Superfamily
af_O33229_243_386_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9995 240 382 1.20.140.10
af_P28330_285_428_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9924 240 382 1.20.140.10
2pg0B03 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9877 235 380 1.20.140.10
af_O33229_243_386_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9857 240 382 1.20.140.10
2pg0A02 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.9843 125 230 2.40.110.10
ID Description Score Start End GO Terms
AF-A0A2R7SUN5-F1-model_v4 deleted 0.9936 142 379
AF-A0A1H4XSY0-F1-model_v4 Acyl-[acyl-carrier-protein] dehydrogenase MbtN (Mycobactin synthase protein N) 0.9902 6 382 GO:0003995
GO:0005737
GO:0033539
GO:0050660
AF-A0A848DKD1-F1-model_v4 Acyl-CoA dehydrogenase 0.9894 216 382 GO:0003995
GO:0005737
GO:0033539
GO:0050660
AF-A0A402C4L9-F1-model_v4 Butyryl-CoA dehydrogenase 0.9891 1 382 GO:0003995
GO:0050660
AF-V7MQB5-F1-model_v4 deleted 0.9887 1 325

Map