F393988

General Info

Members Datasets Scaffolds Average Seq Length
297 222 594 300

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2954002825|2954008871
Length 297
Sequence TVTDVFEEHRPVLMGVAYRMLGRVADAEDVVQDAWLRWSGADRTDVREPRGYLVRVTTRLAIDRLRQVKARGETYVGPWLPEPYVTELTGAAGTVPDAAERVVLADTVSLAVMVVMESLSPLERAVFVLREAFGYPFAEIAAMLDRSEPAVRQLAGRARRHVDERRPRYDVDPAQRRDLTERFLVAAERGDLESLMELLAPDVCLVADSGGLAQAPRRILESADHVGRFVIGIAAGKGLVDASFRFLEVNGGFAVLILSGGKPDAVFQMDVADGRIQYVYIIRNPDKVGFLATPQEG

Samples

Sample ID Description Type Environment
1 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
5 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
6 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
7 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
8 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
9 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
10 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
11 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
12 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
13 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
14 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
15 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
16 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
17 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
18 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
19 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
20 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
21 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
22 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
23 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
24 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
25 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
26 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
27 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
28 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
29 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
30 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
31 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
32 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
33 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
34 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
35 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
36 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
37 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
38 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
39 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
40 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
41 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
42 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
43 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
44 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
45 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
46 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
47 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
48 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
49 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
50 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
51 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
52 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
53 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
54 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
55 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
56 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
57 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
58 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
59 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
60 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
61 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
62 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
63 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
64 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
65 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
66 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
67 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
68 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
69 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
70 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
71 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
72 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
73 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
74 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
75 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
76 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
77 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
78 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
79 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
80 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
81 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
82 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
83 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
84 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
85 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
86 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
87 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
88 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
89 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
90 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
91 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
92 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
93 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
94 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
95 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
96 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
97 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
98 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
99 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
100 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
101 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
102 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
103 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
104 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
105 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
106 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
107 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
108 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
109 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
110 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
111 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
112 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
113 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
114 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
115 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
116 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
117 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
118 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
119 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
120 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
121 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
122 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
124 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
127 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
137 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
138 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
139 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
140 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
141 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
142 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
143 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
144 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
145 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
146 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
147 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
148 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
149 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
151 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
152 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
153 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
154 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
155 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
156 3300053113 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 endosphere Metagenome Endosphere
157 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
158 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
159 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
160 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
161 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
162 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
163 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
164 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
165 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
166 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
167 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
168 2643221548 Streptomyces sp. Root55 Isolate Unclassified
169 2643221578 Streptomyces sp. Root63 Isolate Unclassified
170 2643221647 Streptomyces sp. Root369 Isolate Unclassified
171 2643221670 Streptomyces sp. Root431 Isolate Unclassified
172 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
173 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
174 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
175 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
176 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
177 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
178 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
179 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
180 2808606448 Streptomyces sp. 193411 Isolate Unclassified
181 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
182 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
183 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
184 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
185 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
186 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
187 2862574272 Streptomyces sp. AcE210 Isolate Nodule
188 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
189 2867428634 Streptomyces sp. RP5T Isolate Unclassified
190 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
191 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
192 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
193 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
194 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
195 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
196 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
197 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
198 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
199 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
200 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
201 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
202 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
203 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
204 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
205 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
206 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
207 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
208 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
209 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
210 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
211 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
212 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
213 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
214 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
215 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
216 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
217 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
218 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
219 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
220 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
221 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
222 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 79.46
Metatranscriptomes 0
Isolates 20.54

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.71
Nodule 1.35
Rhizoplane 0.34
Rhizosphere 75.76
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24737J22298_10022771 3300001990 Bacteria 1991
2 rootH1_10031241 3300003316 Bacteria 4109
3 rootL2_10048584 3300003322 Bacteria 3029
4 Ga0081455_10064067 3300005937 Bacteria 3080
5 Ga0075368_10001334 3300006042 Bacteria 7842
6 Ga0075363_100036224 3300006048 Bacteria 2587
7 Ga0075367_10002287 3300006178 Bacteria 8690
8 Ga0075370_10108728 3300006353 Bacteria 1609
9 Ga0099826_10165749 3300006948 Bacteria 1246
10 Ga0182008_10001088 3300014497 Bacteria 18738
11 Ga0157376_10269643 3300014969 Bacteria 1598
12 Ga0182007_10001536 3300015262 Bacteria 12323
13 Ga0183367_1003 3300015688 Bacteria 814276
14 Ga0207426_1000877 3300025302 Bacteria 31114
15 Ga0207647_10002380 3300025904 Bacteria 14274
16 Ga0207702_10062752 3300026078 Bacteria 3175
17 Ga0209813_10007600 3300027866 Bacteria 2705
18 Ga0307517_10016151 3300028786 Bacteria 9836
19 Ga0307515_10006537 3300028794 Bacteria 23308
20 Ga0307515_10099358 3300028794 Bacteria 3534
21 Ga0307511_10000093 3300030521 Bacteria 76097
22 Ga0307511_10027735 3300030521 Bacteria 5166
23 Ga0307511_10029729 3300030521 Bacteria 4924
24 Ga0307512_10017345 3300030522 Bacteria 6610
25 Ga0307512_10065431 3300030522 Bacteria 2757
26 Ga0307513_10029666 3300031456 Bacteria 6229
27 Ga0307513_10112709 3300031456 Bacteria 2709
28 Ga0307509_10026960 3300031507 Bacteria 6399
29 Ga0307514_10000838 3300031649 Bacteria 49655
30 Ga0307514_10151122 3300031649 Bacteria 1557
31 Ga0307516_10017868 3300031730 Bacteria 7386
32 Ga0307516_10019724 3300031730 Bacteria 6977
33 Ga0307516_10246705 3300031730 Bacteria 1482
34 Ga0307518_10020580 3300031838 Bacteria 4740
35 Ga0307518_10124532 3300031838 Bacteria 1819
36 Ga0307410_10102938 3300031852 Bacteria 2050
37 Ga0307409_100241516 3300031995 Bacteria 1645
38 Ga0307416_100024719 3300032002 Bacteria 4391
39 Ga0307507_10007139 3300033179 Bacteria 16499
40 Ga0307507_10075124 3300033179 Bacteria 3026
41 Ga0307510_10009545 3300033180 Bacteria 11561
42 Ga0307510_10073342 3300033180 Bacteria 3392
43 Ga0307510_10164965 3300033180 Bacteria 1805
44 Ga0395898_0009428 3300037466 Bacteria 10253
45 Ga0395898_0014243 3300037466 Bacteria 8174
46 Ga0439436_0044591 3300041404 Bacteria 1263
47 Ga0451837_0711767 3300041494 Bacteria 2741
48 Ga0451841_0593537 3300041498 Bacteria 2166
49 Ga0451851_1006635 3300041507 Bacteria 1088
50 Ga0451853_2391674 3300041512 Bacteria 1401
51 Ga0439433_0016652 3300041999 Bacteria 1629
52 Ga0439449_0003675 3300042007 Bacteria 5952
53 Ga0439449_0023845 3300042007 Bacteria 2288
54 Ga0439455_0000962 3300042012 Bacteria 4497
55 Ga0439457_000293 3300042014 Bacteria 13814
56 Ga0450894_000067 3300042131 Bacteria 16376
57 Ga0450898_001898 3300042134 Bacteria 2837
58 Ga0450899_002697 3300042135 Bacteria 1918
59 Ga0450900_012980 3300042136 Bacteria 1097
60 Ga0450903_000071 3300042138 Bacteria 20404
61 Ga0439458_0000246 3300042157 Bacteria 13118
62 Ga0466969_0006479 3300044656 Bacteria 6231
63 Ga0466972_0000824 3300044658 Bacteria 14837
64 Ga0466972_0028657 3300044658 Bacteria 2746
65 Ga0466972_0034325 3300044658 Bacteria 2486
66 Ga0466965_0001707 3300044683 Bacteria 9021
67 Ga0466965_0027634 3300044683 Bacteria 2755
68 Ga0466966_0001546 3300044684 Bacteria 14750
69 Ga0466961_0002383 3300044693 Bacteria 11671
70 Ga0466963_0002646 3300044694 Bacteria 10066
71 Ga0466963_0129610 3300044694 Bacteria 1741
72 Ga0466964_0001398 3300044706 Bacteria 8239
73 Ga0466971_0000117 3300044719 Bacteria 28887
74 Ga0466968_0000305 3300044735 Bacteria 15719
75 Ga0466970_0004945 3300044765 Bacteria 6582
76 Ga0466970_0030431 3300044765 Bacteria 2846
77 Ga0466957_0002663 3300044842 Bacteria 9643
78 Ga0466959_0002612 3300045049 Bacteria 11570
79 Ga0466959_0039978 3300045049 Bacteria 3466
80 Ga0466958_0000510 3300045836 Bacteria 16256
81 Ga0466967_0001219 3300045976 Bacteria 14500
82 Ga0466967_0048442 3300045976 Bacteria 3710
83 Ga0466967_0183567 3300045976 Bacteria 1974
84 Ga0495617_005325 3300046452 Bacteria 4577
85 Ga0495592_0035021 3300046454 Bacteria 3784
86 Ga0495603_0002098 3300046455 Bacteria 11729
87 Ga0495603_0021176 3300046455 Bacteria 3936
88 Ga0495603_0023055 3300046455 Bacteria 3768
89 Ga0495629_0001628 3300046459 Bacteria 17645
90 Ga0495629_0019716 3300046459 Bacteria 4814
91 Ga0495629_0071338 3300046459 Bacteria 2424
92 Ga0495629_0083631 3300046459 Bacteria 2227
93 Ga0495638_0176956 3300046460 Bacteria 1220
94 Ga0495641_0135538 3300046461 Bacteria 1099
95 Ga0495651_0022671 3300046462 Bacteria 4880
96 Ga0495605_0003408 3300046474 Bacteria 9470
97 Ga0495605_0079458 3300046474 Bacteria 1536
98 Ga0495605_0087076 3300046474 Bacteria 1453
99 Ga0495639_0019240 3300046475 Bacteria 2979
100 Ga0495662_0001847 3300046476 Bacteria 10614
101 Ga0495662_0036561 3300046476 Bacteria 2369
102 Ga0495662_0072887 3300046476 Bacteria 1665
103 Ga0495594_0018173 3300046499 Bacteria 3722
104 Ga0495596_0078682 3300046500 Bacteria 1280
105 Ga0495607_0016289 3300046501 Bacteria 4799
106 Ga0495583_0022299 3300046506 Bacteria 3233
107 Ga0495606_0002917 3300046507 Bacteria 18880
108 Ga0495610_0022556 3300046512 Bacteria 3441
109 Ga0495616_0020909 3300046513 Bacteria 3553
110 Ga0495618_0067375 3300046514 Bacteria 2276
111 Ga0495620_0006721 3300046515 Bacteria 6294
112 Ga0495620_0036860 3300046515 Bacteria 2183
113 Ga0495628_0071160 3300046516 Bacteria 2711
114 Ga0495631_0002488 3300046518 Bacteria 10371
115 Ga0495631_0144997 3300046518 Bacteria 1019
116 Ga0495643_0002940 3300046522 Bacteria 12910
117 Ga0495648_0084975 3300046524 Bacteria 1789
118 Ga0495652_0120799 3300046529 Bacteria 2090
119 Ga0495654_0129751 3300046530 Bacteria 1133
120 Ga0495640_0016130 3300046533 Bacteria 5594
121 Ga0495609_0020890 3300046538 Bacteria 3021
122 Ga0495597_0042857 3300046542 Bacteria 2016
123 Ga0495622_0032131 3300046557 Bacteria 2451
124 Ga0495622_0041474 3300046557 Bacteria 2140
125 Ga0495633_0050745 3300046558 Bacteria 1955
126 Ga0495668_0005469 3300046616 Bacteria 8594
127 Ga0495668_0057702 3300046616 Bacteria 2142
128 Ga0495611_0071288 3300046648 Bacteria 1588
129 Ga0495611_0113118 3300046648 Bacteria 1264
130 Ga0495625_0002211 3300046660 Bacteria 21506
131 Ga0495625_0053453 3300046660 Bacteria 2888
132 Ga0495625_0115174 3300046660 Bacteria 1834
133 Ga0495635_0051006 3300046663 Bacteria 2852
134 Ga0495661_0148255 3300046665 Bacteria 1269
135 Ga0495588_0001871 3300046674 Bacteria 8973
136 Ga0495588_0013053 3300046674 Bacteria 3948
137 Ga0495657_0036297 3300046675 Bacteria 3407
138 Ga0495657_0161445 3300046675 Bacteria 1386
139 Ga0495646_0082503 3300046680 Bacteria 1870
140 Ga0495613_0001293 3300046689 Bacteria 19115
141 Ga0495613_0033301 3300046689 Bacteria 3829
142 Ga0495613_0097833 3300046689 Bacteria 2120
143 Ga0495613_0170724 3300046689 Bacteria 1543
144 Ga0495624_0061110 3300046690 Bacteria 2361
145 Ga0495671_0007708 3300046692 Bacteria 6110
146 Ga0495649_0040379 3300046694 Bacteria 2556
147 Ga0495589_0033836 3300046794 Bacteria 2565
148 Ga0495589_0050432 3300046794 Bacteria 2058
149 Ga0495589_0073184 3300046794 Bacteria 1672
150 Ga0495589_0122427 3300046794 Bacteria 1252
151 Ga0495600_0012975 3300046809 Bacteria 5223
152 Ga0495660_0130918 3300046810 Bacteria 1258
153 Ga0495581_0022371 3300047315 Bacteria 3664
154 Ga0495581_0105308 3300047315 Bacteria 1639
155 Ga0495604_0087070 3300047317 Bacteria 2327
156 Ga0495604_0144794 3300047317 Bacteria 1694
157 Ga0495636_0000562 3300047318 Bacteria 13627
158 Ga0495636_0011794 3300047318 Bacteria 3462
159 Ga0495636_0015245 3300047318 Bacteria 3063
160 Ga0495676_0011686 3300047321 Bacteria 7916
161 Ga0495676_0015695 3300047321 Bacteria 6734
162 Ga0495676_0017010 3300047321 Bacteria 6438
163 Ga0495676_0061071 3300047321 Bacteria 2950
164 Ga0495680_0012909 3300047322 Bacteria 7319
165 Ga0495687_000668 3300047443 Bacteria 39207
166 Ga0495687_004096 3300047443 Bacteria 10087
167 Ga0495687_029448 3300047443 Bacteria 2541
168 Ga0495675_0109492 3300047444 Bacteria 1725
169 Ga0495675_0133343 3300047444 Bacteria 1543
170 Ga0495677_0056234 3300047445 Bacteria 1453
171 Ga0495685_001741 3300047447 Bacteria 6709
172 Ga0495685_006516 3300047447 Bacteria 3826
173 Ga0495685_008428 3300047447 Bacteria 3424
174 Ga0495685_101422 3300047447 Bacteria 950
175 Ga0495681_0002694 3300047470 Bacteria 12584
176 Ga0495681_0015427 3300047470 Bacteria 4322
177 Ga0495686_0043196 3300047472 Bacteria 2860
178 Ga0495686_0046129 3300047472 Bacteria 2756
179 Ga0495602_0019377 3300048088 Bacteria 6756
180 Ga0495614_0001317 3300048089 Bacteria 10704
181 Ga0495614_0009969 3300048089 Bacteria 4193
182 Ga0495614_0012467 3300048089 Bacteria 3730
183 Ga0495614_0099840 3300048089 Bacteria 1267
184 Ga0495626_0010741 3300048091 Bacteria 4869
185 Ga0496113_0381475 3300048916 Bacteria 1131
186 Ga0501032_0001951 3300049569 Bacteria 16240
187 Ga0501032_0046596 3300049569 Bacteria 2930
188 Ga0501033_0014865 3300049570 Bacteria 5909
189 Ga0501034_0008702 3300049571 Bacteria 10690
190 Ga0501034_0090617 3300049571 Bacteria 3055
191 Ga0501036_0007326 3300049572 Bacteria 8986
192 Ga0501037_0002600 3300049573 Bacteria 13034
193 Ga0501038_0000639 3300049574 Bacteria 31108
194 Ga0501038_0003081 3300049574 Bacteria 15531
195 Ga0501039_0014825 3300049575 Bacteria 5961
196 Ga0501040_0002572 3300049576 Bacteria 11704
197 Ga0501041_0000324 3300049577 Bacteria 23255
198 Ga0501042_0002035 3300049578 Bacteria 12252
199 Ga0501043_0002955 3300049579 Bacteria 14172
200 Ga0501043_0033220 3300049579 Bacteria 4058
201 Ga0501043_0083615 3300049579 Bacteria 2509
202 Ga0501046_0211759 3300049580 Bacteria 1438
203 Ga0501047_0008353 3300049581 Bacteria 9771
204 Ga0501047_0083126 3300049581 Bacteria 3077
205 Ga0501048_0002939 3300049582 Bacteria 13025
206 Ga0501048_0066976 3300049582 Bacteria 2539
207 Ga0501067_0004626 3300049583 Bacteria 7620
208 Ga0501068_0000686 3300049584 Bacteria 17319
209 Ga0501069_0002695 3300049585 Bacteria 9065
210 Ga0501069_0042671 3300049585 Bacteria 2510
211 Ga0501070_0012920 3300049586 Bacteria 7037
212 Ga0501071_0002014 3300049587 Bacteria 12158
213 Ga0501072_0001674 3300049588 Bacteria 16499
214 Ga0501073_0013233 3300049589 Bacteria 6012
215 Ga0501074_0006162 3300049590 Bacteria 8658
216 Ga0501076_0003769 3300049592 Bacteria 10661
217 Ga0501077_0088421 3300049593 Bacteria 1963
218 Ga0501079_0007710 3300049741 Bacteria 8147
219 Ga0501080_0059033 3300049742 Bacteria 3570
220 Ga0501080_0111859 3300049742 Bacteria 2531
221 Ga0501035_0004520 3300049822 Bacteria 13204
222 Ga0501044_0001855 3300049823 Bacteria 24529
223 Ga0501044_0004258 3300049823 Bacteria 16054
224 Ga0501044_0069212 3300049823 Bacteria 3593
225 Ga0501045_0011072 3300049824 Bacteria 6319
226 nmdc:mga0yw44_21812_c1 3300050492 Bacteria 3580
227 nmdc:mga06z11_10069_c1 3300050494 Bacteria 4012
228 nmdc:mga04h51_6874_c1 3300050495 Bacteria 2975
229 nmdc:mga07m45_22897_c1 3300050496 Bacteria 3412
230 Ga0500560_009300 3300053107 Bacteria 2409
231 Ga0500580_095267 3300053113 Bacteria 1181
232 Ga0500614_010697 3300053123 Bacteria 1975
233 Ga0500573_0023815 3300053140 Bacteria 3517
234 Ga0501084_0002366 3300054114 Bacteria 15172
235 Ga0466962_0001435 3300061719 Bacteria 11113
236 Ga0530510_0015341 3300061734 Bacteria 5413
237 2954008871 2954002825 Bacteria 9173742
238 2547409132 2547132111 Bacteria 8013147
239 2585309725 2582581313 Bacteria 10042643
240 2585315950 2582581314 Bacteria 11452267
241 2616692981 2616644814 Bacteria 11555299
242 2616905865 2616644941 Bacteria 8510691
243 2643764466 2643221548 Bacteria 8053412
244 2643905127 2643221578 Bacteria 9213798
245 2644264242 2643221647 Bacteria 10741251
246 2644386033 2643221670 Bacteria 6497041
247 2644403185 2643221673 Bacteria 9196637
248 2644430059 2643221677 Bacteria 7584031
249 2644458475 2643221682 Bacteria 6743283
250 2784586523 2784132148 Bacteria 8627943
251 2785345973 2784746763 Bacteria 9783172
252 2785366927 2784746768 Bacteria 10036182
253 2786667964 2786546132 Bacteria 10419719
254 2808918146 2808606375 Bacteria 9466072
255 2809230035 2808606448 Bacteria 8656184
256 2811846767 2808606982 Bacteria 7791042
257 2812482614 2811994917 Bacteria 7761064
258 2852641366 2852635781 Bacteria 8251373
259 2862289942 2862281513 Bacteria 9621493
260 2862386128 2862382967 Bacteria 10317375
261 2862514612 2862507626 Bacteria 9425308
262 2862580219 2862574272 Bacteria 10567477
263 2863407248 2863404153 Bacteria 9672205
264 2867435977 2867428634 Bacteria 9590268
265 2873158172 2873151551 Bacteria 8625867
266 2875392496 2875391855 Bacteria 7600475
267 2877683614 2877676314 Bacteria 9512378
268 2912722797 2912715099 Bacteria 9460473
269 2912726399 2912723979 Bacteria 8557534
270 2918502295 2918501144 Bacteria 8668083
271 2946052241 2946045630 Bacteria 8527308
272 2946065348 2946064051 Bacteria 8957905
273 2947232097 2947224130 Bacteria 9938529
274 2954388874 2954380949 Bacteria 10050426
275 2954674250 2954673503 Bacteria 9685905
276 2954689882 2954682443 Bacteria 9862841
277 2954699663 2954691527 Bacteria 10720516
278 2954702555 2954701450 Bacteria 10834262
279 2954718604 2954711539 Bacteria 10867210
280 2954728575 2954721474 Bacteria 10456478
281 2954733236 2954731030 Bacteria 10243860
282 2954747471 2954740390 Bacteria 10229294
283 2954752118 2954749733 Bacteria 10366972
284 2954766586 2954759201 Bacteria 9358192
285 2966604623 2966598605 Bacteria 7676064
286 2990063607 2990059506 Bacteria 9321252
287 2997452723 2997451912 Bacteria 8492419
288 2997603318 2997600082 Bacteria 9896405
289 3006394092 3006393351 Bacteria 6615579
290 3006497156 3006493962 Bacteria 8825450
291 8008561008 8008558824 Bacteria 10610750
292 8008580973 8008574985 Bacteria 7815457
293 8023624769 8023623736 Bacteria 8593882
294 8025480644 8025478263 Bacteria 8209203
295 8048413487 8048406513 Bacteria 8936924
296 8056668742 8056667051 Bacteria 6953971
297 8056832553 8056829672 Bacteria 9045328
298 JGI24737J22298_10022771
299 rootH1_10031241
300 rootL2_10048584
301 Ga0081455_10064067
302 Ga0075368_10001334
303 Ga0075363_100036224
304 Ga0075367_10002287
305 Ga0075370_10108728
306 Ga0099826_10165749
307 Ga0182008_10001088
308 Ga0157376_10269643
309 Ga0182007_10001536
310 Ga0183367_1003
311 Ga0207426_1000877
312 Ga0207647_10002380
313 Ga0207702_10062752
314 Ga0209813_10007600
315 Ga0307517_10016151
316 Ga0307515_10006537
317 Ga0307515_10099358
318 Ga0307511_10000093
319 Ga0307511_10027735
320 Ga0307511_10029729
321 Ga0307512_10017345
322 Ga0307512_10065431
323 Ga0307513_10029666
324 Ga0307513_10112709
325 Ga0307509_10026960
326 Ga0307514_10000838
327 Ga0307514_10151122
328 Ga0307516_10017868
329 Ga0307516_10019724
330 Ga0307516_10246705
331 Ga0307518_10020580
332 Ga0307518_10124532
333 Ga0307410_10102938
334 Ga0307409_100241516
335 Ga0307416_100024719
336 Ga0307507_10007139
337 Ga0307507_10075124
338 Ga0307510_10009545
339 Ga0307510_10073342
340 Ga0307510_10164965
341 Ga0395898_0009428
342 Ga0395898_0014243
343 Ga0439436_0044591
344 Ga0451837_0711767
345 Ga0451841_0593537
346 Ga0451851_1006635
347 Ga0451853_2391674
348 Ga0439433_0016652
349 Ga0439449_0003675
350 Ga0439449_0023845
351 Ga0439455_0000962
352 Ga0439457_000293
353 Ga0450894_000067
354 Ga0450898_001898
355 Ga0450899_002697
356 Ga0450900_012980
357 Ga0450903_000071
358 Ga0439458_0000246
359 Ga0466969_0006479
360 Ga0466972_0000824
361 Ga0466972_0028657
362 Ga0466972_0034325
363 Ga0466965_0001707
364 Ga0466965_0027634
365 Ga0466966_0001546
366 Ga0466961_0002383
367 Ga0466963_0002646
368 Ga0466963_0129610
369 Ga0466964_0001398
370 Ga0466971_0000117
371 Ga0466968_0000305
372 Ga0466970_0004945
373 Ga0466970_0030431
374 Ga0466957_0002663
375 Ga0466959_0002612
376 Ga0466959_0039978
377 Ga0466958_0000510
378 Ga0466967_0001219
379 Ga0466967_0048442
380 Ga0466967_0183567
381 Ga0495617_005325
382 Ga0495592_0035021
383 Ga0495603_0002098
384 Ga0495603_0021176
385 Ga0495603_0023055
386 Ga0495629_0001628
387 Ga0495629_0019716
388 Ga0495629_0071338
389 Ga0495629_0083631
390 Ga0495638_0176956
391 Ga0495641_0135538
392 Ga0495651_0022671
393 Ga0495605_0003408
394 Ga0495605_0079458
395 Ga0495605_0087076
396 Ga0495639_0019240
397 Ga0495662_0001847
398 Ga0495662_0036561
399 Ga0495662_0072887
400 Ga0495594_0018173
401 Ga0495596_0078682
402 Ga0495607_0016289
403 Ga0495583_0022299
404 Ga0495606_0002917
405 Ga0495610_0022556
406 Ga0495616_0020909
407 Ga0495618_0067375
408 Ga0495620_0006721
409 Ga0495620_0036860
410 Ga0495628_0071160
411 Ga0495631_0002488
412 Ga0495631_0144997
413 Ga0495643_0002940
414 Ga0495648_0084975
415 Ga0495652_0120799
416 Ga0495654_0129751
417 Ga0495640_0016130
418 Ga0495609_0020890
419 Ga0495597_0042857
420 Ga0495622_0032131
421 Ga0495622_0041474
422 Ga0495633_0050745
423 Ga0495668_0005469
424 Ga0495668_0057702
425 Ga0495611_0071288
426 Ga0495611_0113118
427 Ga0495625_0002211
428 Ga0495625_0053453
429 Ga0495625_0115174
430 Ga0495635_0051006
431 Ga0495661_0148255
432 Ga0495588_0001871
433 Ga0495588_0013053
434 Ga0495657_0036297
435 Ga0495657_0161445
436 Ga0495646_0082503
437 Ga0495613_0001293
438 Ga0495613_0033301
439 Ga0495613_0097833
440 Ga0495613_0170724
441 Ga0495624_0061110
442 Ga0495671_0007708
443 Ga0495649_0040379
444 Ga0495589_0033836
445 Ga0495589_0050432
446 Ga0495589_0073184
447 Ga0495589_0122427
448 Ga0495600_0012975
449 Ga0495660_0130918
450 Ga0495581_0022371
451 Ga0495581_0105308
452 Ga0495604_0087070
453 Ga0495604_0144794
454 Ga0495636_0000562
455 Ga0495636_0011794
456 Ga0495636_0015245
457 Ga0495676_0011686
458 Ga0495676_0015695
459 Ga0495676_0017010
460 Ga0495676_0061071
461 Ga0495680_0012909
462 Ga0495687_000668
463 Ga0495687_004096
464 Ga0495687_029448
465 Ga0495675_0109492
466 Ga0495675_0133343
467 Ga0495677_0056234
468 Ga0495685_001741
469 Ga0495685_006516
470 Ga0495685_008428
471 Ga0495685_101422
472 Ga0495681_0002694
473 Ga0495681_0015427
474 Ga0495686_0043196
475 Ga0495686_0046129
476 Ga0495602_0019377
477 Ga0495614_0001317
478 Ga0495614_0009969
479 Ga0495614_0012467
480 Ga0495614_0099840
481 Ga0495626_0010741
482 Ga0496113_0381475
483 Ga0501032_0001951
484 Ga0501032_0046596
485 Ga0501033_0014865
486 Ga0501034_0008702
487 Ga0501034_0090617
488 Ga0501036_0007326
489 Ga0501037_0002600
490 Ga0501038_0000639
491 Ga0501038_0003081
492 Ga0501039_0014825
493 Ga0501040_0002572
494 Ga0501041_0000324
495 Ga0501042_0002035
496 Ga0501043_0002955
497 Ga0501043_0033220
498 Ga0501043_0083615
499 Ga0501046_0211759
500 Ga0501047_0008353
501 Ga0501047_0083126
502 Ga0501048_0002939
503 Ga0501048_0066976
504 Ga0501067_0004626
505 Ga0501068_0000686
506 Ga0501069_0002695
507 Ga0501069_0042671
508 Ga0501070_0012920
509 Ga0501071_0002014
510 Ga0501072_0001674
511 Ga0501073_0013233
512 Ga0501074_0006162
513 Ga0501076_0003769
514 Ga0501077_0088421
515 Ga0501079_0007710
516 Ga0501080_0059033
517 Ga0501080_0111859
518 Ga0501035_0004520
519 Ga0501044_0001855
520 Ga0501044_0004258
521 Ga0501044_0069212
522 Ga0501045_0011072
523 nmdc:mga0yw44_21812_c1
524 nmdc:mga06z11_10069_c1
525 nmdc:mga04h51_6874_c1
526 nmdc:mga07m45_22897_c1
527 Ga0500560_009300
528 Ga0500580_095267
529 Ga0500614_010697
530 Ga0500573_0023815
531 Ga0501084_0002366
532 Ga0466962_0001435
533 Ga0530510_0015341
534 2954008871
535 2547409132
536 2585309725
537 2585315950
538 2616692981
539 2616905865
540 2643764466
541 2643905127
542 2644264242
543 2644386033
544 2644403185
545 2644430059
546 2644458475
547 2784586523
548 2785345973
549 2785366927
550 2786667964
551 2808918146
552 2809230035
553 2811846767
554 2812482614
555 2852641366
556 2862289942
557 2862386128
558 2862514612
559 2862580219
560 2863407248
561 2867435977
562 2873158172
563 2875392496
564 2877683614
565 2912722797
566 2912726399
567 2918502295
568 2946052241
569 2946065348
570 2947232097
571 2954388874
572 2954674250
573 2954689882
574 2954699663
575 2954702555
576 2954718604
577 2954728575
578 2954733236
579 2954747471
580 2954752118
581 2954766586
582 2966604623
583 2990063607
584 2997452723
585 2997603318
586 3006394092
587 3006497156
588 8008561008
589 8008580973
590 8023624769
591 8025480644
592 8048413487
593 8056668742
594 8056832553

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04545

Sigma70_r4

Sigma-70, region 4

115

164

0.95

PF08281

Sigma70_r4_2

Sigma-70, region 4

109

162

0.95

PF04542

Sigma70_r2

Sigma-70 region 2

5

71

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
2h27-assembly2.cif.gz_D crystal structure of escherichia coli sigmae region 4 bound to its-35 element dna 0.9547 116 166
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.947 116 162
2o8x-assembly1.cif.gz_A "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.944 116 162
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.9398 116 166
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9317 116 162
ID Description Score Start End Superfamily
af_P0AGB6_121_191_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9621 116 162 1.10.10.10
1or7A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9595 116 162 1.10.10.10
1or7B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.959 116 166 1.10.10.10
2h27D00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9547 116 166 1.10.10.10
2o8xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.944 116 162 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A4D4L5G4-F1-model_v4 Uncharacterized protein 0.9664 204 289 GO:0016987
AF-A0A656KVT4-F1-model_v4 deleted 0.9538 173 294
AF-A0A2V7J9K7-F1-model_v4 SnoaL-like domain-containing protein 0.9536 181 291 GO:0016987
AF-A0A2A8SGA4-F1-model_v4 SnoaL-like domain-containing protein 0.9522 178 289 GO:0016987
AF-A0A0P4R5G6-F1-model_v4 RNA polymerase ECF-type sigma factor 0.9442 206 289 GO:0016987

Map