F391823

General Info

Members Datasets Scaffolds Average Seq Length
293 160 242 814

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2895525241|2895525347
Length 944
Sequence PPATPPAPPRPTAAALRRARRQLDAWFAQREWIPLRFQREVWRRALAGESGLLHTPTGSGKTLAVAGTSLLEALARAESAPATKRRMRAAEAHPLRLLWITPLRALASDTTRALREPAAALGLDWRVGQRTGDASARDRRLAREGGLDALVTTPESLALLLSYPDAPERLRALDMVVVDEWHELLGNKRGVLLQLNLARLRALRPGLRIWGLSATLGNLGQAREVLLPHVPGAALVGSPRARTVAVRTLRAEGRERFPWAGHLGLGQLARVLERLLAVRSSLLFTNTRAQAELWHQALAAVWPEDPATLALHHGSLDPALRGAAEQGLREGTVRCVVATSSLDLGVDFPAVDQVLQLGSPKGVARLLQRAGRARHRPGESGAITCVPTHALELLEFAAARHALRSGRVEARPPPRCPLDVLAQHCVSCALAGGFEPDALLAEVRGTHAFAGLDDATWRAVLDFIVQGGRALSHYPDFRKVVRAEDGRYVVEDRRVATRHRLSIGTITSDGSVTVRMLRGGRLGAVEEQFVGRLRRGDRFQFAGRLLELVRLEDMTAYVRPVRGGEGAVPTWRGGRMPLSSQLADEVEQLLGTPDGSPELRTLAPLLALQERLSALPGPGRLLAEQVTLRGRLHLFAYPFGGRQVNEGLAALFALRWGRLQRNSFAFAANDYGLVLSPAQPVPVDEGLLQAMFSPQALAEDLRQALNLGELARRRFREIARVSGLLVPTLPGRQLRSLRQLQASSGLLFDVLSRHDPGHLLLAQAEREVLEGELELARLEQVLRDRGARAGPGPAAGADPAVVPALGRGPAWPAQHRGLAHPRAPRRRTWRPGQVPSPLRIATSKSSASRSAVGTLMSRRTRRAGMRALKRPSFGASHVAPTVGKVVMESSSCARSTVWATAARIVANAPEIAGASMSPFAVSSTRRGKRRKSTTPSRASSCLIW

Samples

Sample ID Description Type Environment
1 2511231024 Pseudomonas sp. GM84 Isolate Nodule
2 2576861471 Stenotrophomonas rhizophila DSM 14405 Isolate Rhizosphere
3 2593339238 Luteibacter sp. UNCMF366Tsu5.1 Isolate Unclassified
4 2593339239 Luteibacter sp. UNCMF331Sha3.1 Isolate Unclassified
5 2599185292 Achromobacter sp. NFACC18-2 Isolate Rhizoplane
6 2643221569 Achromobacter sp. Root565 Isolate Unclassified
7 2643221594 Achromobacter sp. Root170 Isolate Unclassified
8 2643221621 Achromobacter sp. Root83 Isolate Unclassified
9 2718218334 Luteibacter rhizovicinus LJ96 Isolate Rhizosphere
10 2734482264 Dyella sp. AD052 Isolate Unclassified
11 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
12 2765235841 Pseudomonas putida AA7 Isolate Unclassified
13 2808606395 Achromobacter sp. SLBN-14 Isolate Unclassified
14 2818991440 Luteibacter yeojuensis 583 Isolate Unclassified
15 2818991457 Xanthomonas translucens 569 Isolate Unclassified
16 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
17 2842780639 Pseudoxanthomonas sp. R-71986 Isolate Unclassified
18 2842914999 Luteibacter sp. R-72151 Isolate Unclassified
19 2852649853 Stenotrophomonas sp. JAI102 Isolate Rhizosphere
20 2852684882 Xanthomonas sp. JAI131 Isolate Rhizosphere
21 2857442823 Stenotrophomonas sp. R-74235 Isolate Unclassified
22 2857537821 Achromobacter sp. R-71975 Isolate Unclassified
23 2884338543 Luteibacter pinisoli MAH-14 Isolate Rhizosphere
24 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
25 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
26 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
27 2904463128 Luteibacter yeojuensis 3191 Isolate Unclassified
28 2904479285 Comamonas sediminis 4487 Isolate Rhizosphere
29 2919085039 Luteibacter sp. 1214 Isolate Unclassified
30 2919130084 Xanthomonas sp. 1678 Isolate Rhizosphere
31 2919155634 Pseudomonas fulva 1992 Isolate Unclassified
32 2919404418 Luteibacter sp. 3190 Isolate Unclassified
33 2919513703 Luteimonas sp. 3794 Isolate Unclassified
34 2919675420 Luteimonas terrae 4099 Isolate Unclassified
35 2929195423 Xanthomonas sp. R-73098 Hybrid assembly Isolate Unclassified
36 2939589442 Stenotrophomonas rhizophila 716 Isolate Rhizosphere
37 2939622612 Stenotrophomonas sp. 2619 Isolate Rhizosphere
38 2941471342 Luteibacter sp. 621 Isolate Unclassified
39 2941475908 Stenotrophomonas rhizophila 2680 Isolate Rhizosphere
40 2941479691
41 2953994433 Luteibacter sp. W1I16 Isolate Rhizosphere
42 2974307012 Stenotrophomonas sp. SORGH_AS_0282 Isolate Unclassified
43 2977247770 Stenotrophomonas rhizophila SORGH_AS 457 Isolate Unclassified
44 3007803356 Pseudomonas sp. CM27 Isolate Unclassified
45 3007872151 Pseudomonas sp. SWRI51 Isolate Rhizosphere
46 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
47 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
48 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
49 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
50 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
51 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
52 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
53 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
54 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
55 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
56 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
57 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
58 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
59 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
60 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
61 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
62 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
63 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
64 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
65 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
66 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
67 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
68 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
69 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
70 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
71 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
73 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
76 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
78 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
80 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
93 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
96 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
97 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
98 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
99 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
100 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
101 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
102 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
103 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
104 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
105 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
106 3300044672 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA3E Metagenome Unclassified
107 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
108 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
109 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
110 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
111 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
112 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
113 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
114 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
115 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
116 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
117 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
118 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
119 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
120 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
121 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
122 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
123 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
124 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
125 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
126 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
127 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
128 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
129 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
130 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
131 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
132 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
133 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
134 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
135 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
136 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
137 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
138 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
139 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
140 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
141 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
142 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
143 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
144 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
145 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
146 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
147 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
148 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
150 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
151 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
152 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
153 3300053135 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 endosphere Metagenome Endosphere
154 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
155 8021622325 Xanthomonas sp. LMG12462 Isolate Rhizosphere
156 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere
157 8052494512 Pseudomonas putida LD6 Isolate Unclassified
158 8054929484 Pseudomonas vlassakiae RW4S1 Isolate Rhizosphere
159 8055878733 Pseudomonas palmensis BBB001 Isolate Rhizosphere
160 8056137416 Pseudomonas fakonensis COW40 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.25
Metatranscriptomes 0.34
Isolates 17.41

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.99
Nodule 1.02
Rhizoplane 2.39
Rhizosphere 41.64
Stem 0
Stem Tuber 0
Unclassified 40.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10008460 3300003320 Bacteria 14652
2 rootH2_10166466 3300003320 Bacteria 3674
3 rootH1_10080861 3300003323 Bacteria 8421
4 Ga0006562J51391_1132138 3300003578 Bacteria 8962
5 Ga0055526_1003734 3300003771 Bacteria 9506
6 Ga0055536_1001722 3300003781 Bacteria 12941
7 Ga0055536_1001780 3300003781 Bacteria 12694
8 Ga0055528_1000867 3300003790 Bacteria 20519
9 Ga0055530_10002899 3300003791 Bacteria 10415
10 Ga0055530_10003102 3300003791 Bacteria 9844
11 Ga0055531_10001068 3300003794 Bacteria 21517
12 Ga0055531_10002306 3300003794 Bacteria 12889
13 Ga0055531_10002461 3300003794 Bacteria 12378
14 Ga0055531_10004372 3300003794 Bacteria 8640
15 Ga0055531_10006918 3300003794 Bacteria 6316
16 Ga0058692_1000024 3300003856 Bacteria 219702
17 Ga0065165_1000565 3300005262 Bacteria 55180
18 Ga0070658_10001381 3300005327 Bacteria 20738
19 Ga0070665_100007769 3300005548 Bacteria 10891
20 Ga0099823_1000376 3300006944 Bacteria 28378
21 Ga0105251_10003039 3300009011 Bacteria 12493
22 Ga0105251_10010555 3300009011 Bacteria 5349
23 Ga0105244_10001713 3300009036 Bacteria 17317
24 Ga0105244_10002909 3300009036 Bacteria 12647
25 Ga0105244_10004722 3300009036 Bacteria 9272
26 Ga0105243_10005058 3300009148 Bacteria 10348
27 Ga0105243_10024956 3300009148 Bacteria 4564
28 Ga0105238_10000702 3300009551 Bacteria 35000
29 Ga0157371_10000320 3300013102 Bacteria 62229
30 Ga0157370_10000184 3300013104 Bacteria 78500
31 Ga0157370_10005405 3300013104 Bacteria 14329
32 Ga0157372_10000274 3300013307 Bacteria 57253
33 Ga0182008_10000045 3300014497 Bacteria 114620
34 Ga0182008_10018960 3300014497 Bacteria 3557
35 Ga0182006_1000057 3300015261 Bacteria 168707
36 Ga0182006_1011068 3300015261 Bacteria 3983
37 Ga0182007_10000128 3300015262 Bacteria 53368
38 Ga0182005_1000096 3300015265 Bacteria 66910
39 Ga0182005_1000588 3300015265 Bacteria 17824
40 Ga0163161_10003693 3300017792 Bacteria 10729
41 Ga0163161_10005992 3300017792 Bacteria 8425
42 Ga0209148_1001097 3300025254 Bacteria 16280
43 Ga0209129_1000346 3300025258 Bacteria 39518
44 Ga0209565_1000119 3300025263 Bacteria 112825
45 Ga0209673_1000866 3300025273 Bacteria 39283
46 Ga0209675_1000048 3300025291 Bacteria 221457
47 Ga0209676_1000034 3300025292 Bacteria 460125
48 Ga0209676_1000091 3300025292 Bacteria 251328
49 Ga0209676_1000231 3300025292 Bacteria 120750
50 Ga0209676_1000355 3300025292 Bacteria 86710
51 Ga0209564_1000106 3300025295 Bacteria 216131
52 Ga0209050_1000175 3300025298 Bacteria 146845
53 Ga0209050_1000206 3300025298 Bacteria 131913
54 Ga0209050_1003858 3300025298 Bacteria 10669
55 Ga0209256_1007580 3300025299 Bacteria 5302
56 Ga0209256_1009969 3300025299 Bacteria 4066
57 Ga0209051_1000384 3300025303 Bacteria 62340
58 Ga0209051_1004856 3300025303 Bacteria 8081
59 Ga0209257_1000062 3300025304 Bacteria 362413
60 Ga0209257_1000096 3300025304 Bacteria 259390
61 Ga0209257_1000320 3300025304 Bacteria 100514
62 Ga0209257_1000492 3300025304 Bacteria 71085
63 Ga0209257_1000745 3300025304 Bacteria 49164
64 Ga0209257_1002308 3300025304 Bacteria 19281
65 Ga0209257_1013895 3300025304 Bacteria 3521
66 Ga0207696_1000022 3300025711 Bacteria 427529
67 Ga0207696_1005976 3300025711 Bacteria 4968
68 Ga0207655_1000399 3300025728 Bacteria 60374
69 Ga0207655_1002011 3300025728 Bacteria 17238
70 Ga0207655_1006933 3300025728 Bacteria 7432
71 Ga0207713_1002783 3300025735 Bacteria 12355
72 Ga0207713_1009727 3300025735 Bacteria 5387
73 Ga0207713_1011057 3300025735 Bacteria 4942
74 Ga0207713_1012232 3300025735 Bacteria 4607
75 Ga0207647_10000168 3300025904 Bacteria 52172
76 Ga0207705_10003128 3300025909 Bacteria 12600
77 Ga0207694_10001036 3300025924 Bacteria 24194
78 Ga0207650_10024696 3300025925 Bacteria 4276
79 Ga0207709_10007061 3300025935 Bacteria 6278
80 Ga0207709_10012233 3300025935 Bacteria 4729
81 Ga0207668_10033159 3300025972 Bacteria 3419
82 Ga0207702_10018063 3300026078 Bacteria 5835
83 Ga0209389_1000131 3300027296 Bacteria 66499
84 Ga0209371_1000016 3300027312 Bacteria 646301
85 Ga0268266_10000021 3300028379 Bacteria 522453
86 Ga0268256_1000015 3300030500 Bacteria 646300
87 Ga0316183_1209112 3300030742 Bacteria 8679
88 Ga0307412_10000227 3300031911 Bacteria 37682
89 Ga0307414_10001812 3300032004 Bacteria 11043
90 Ga0395905_0039279 3300037471 Bacteria 4440
91 Ga0395905_0068175 3300037471 Bacteria 3332
92 Ga0237819_00315 3300038705 Bacteria 17820
93 Ga0439438_000320 3300041405 Bacteria 21667
94 Ga0439465_0000061 3300041413 Bacteria 23263
95 Ga0439432_008835 3300042006 Bacteria 3523
96 Ga0450908_000017 3300042184 Bacteria 39197
97 Ga0450901_000100 3300042533 Bacteria 9240
98 Ga0466982_0000138 3300044672 Bacteria 18232
99 Ga0466968_0002561 3300044735 Bacteria 6682
100 Ga0495617_000095 3300046452 Bacteria 62657
101 Ga0495627_002828 3300046453 Bacteria 8033
102 Ga0495638_0000860 3300046460 Bacteria 31632
103 Ga0495638_0005023 3300046460 Bacteria 9932
104 Ga0495650_0001350 3300046471 Bacteria 24409
105 Ga0495650_0014160 3300046471 Bacteria 4169
106 Ga0495584_0017280 3300046491 Bacteria 3675
107 Ga0495607_0000068 3300046501 Bacteria 102009
108 Ga0495606_0000275 3300046507 Bacteria 90456
109 Ga0495606_0000388 3300046507 Bacteria 74395
110 Ga0495606_0002743 3300046507 Bacteria 19774
111 Ga0495606_0008487 3300046507 Bacteria 8914
112 Ga0495610_0001283 3300046512 Bacteria 22455
113 Ga0495616_0000062 3300046513 Bacteria 91197
114 Ga0495620_0000013 3300046515 Bacteria 160349
115 Ga0495620_0000368 3300046515 Bacteria 31016
116 Ga0495631_0000702 3300046518 Bacteria 21654
117 Ga0495631_0001828 3300046518 Bacteria 12570
118 Ga0495632_0000003 3300046519 Bacteria 396071
119 Ga0495632_0001757 3300046519 Bacteria 17531
120 Ga0495643_0000210 3300046522 Bacteria 89409
121 Ga0495643_0000740 3300046522 Bacteria 37104
122 Ga0495643_0001199 3300046522 Bacteria 25188
123 Ga0495648_0000885 3300046524 Bacteria 31452
124 Ga0495648_0006816 3300046524 Bacteria 9230
125 Ga0495663_0000616 3300046525 Bacteria 12392
126 Ga0495663_0002034 3300046525 Bacteria 6208
127 Ga0495633_0004635 3300046558 Bacteria 8658
128 Ga0495668_0004459 3300046616 Bacteria 9931
129 Ga0495611_0001076 3300046648 Bacteria 14428
130 Ga0495625_0006754 3300046660 Bacteria 10161
131 Ga0495660_0000367 3300046810 Bacteria 39592
132 Ga0495660_0002183 3300046810 Bacteria 12596
133 Ga0495672_0000073 3300047320 Bacteria 179398
134 Ga0495683_0003496 3300047323 Bacteria 9153
135 Ga0495673_0000001 3300047469 Bacteria 1630730
136 Ga0495673_0000030 3300047469 Bacteria 468915
137 Ga0495681_0012718 3300047470 Bacteria 4928
138 Ga0495686_0000019 3300047472 Bacteria 434054
139 Ga0495686_0000175 3300047472 Bacteria 122163
140 Ga0495686_0012686 3300047472 Bacteria 5889
141 Ga0495686_0014166 3300047472 Bacteria 5498
142 Ga0495686_0014846 3300047472 Bacteria 5348
143 Ga0496101_0000410 3300048904 Bacteria 27774
144 Ga0496106_0000420 3300048909 Bacteria 30172
145 Ga0496114_0011345 3300048917 Bacteria 7119
146 Ga0496114_0012375 3300048917 Bacteria 6827
147 Ga0496114_0021973 3300048917 Bacteria 5194
148 Ga0496115_0000293 3300048918 Bacteria 43225
149 Ga0496116_0000205 3300048919 Bacteria 112754
150 Ga0496116_0005714 3300048919 Bacteria 11442
151 Ga0496116_0009529 3300048919 Bacteria 8269
152 Ga0496116_0012341 3300048919 Bacteria 6985
153 Ga0496116_0038603 3300048919 Bacteria 3313
154 Ga0496116_0047342 3300048919 Bacteria 2895
155 Ga0496117_0000476 3300048920 Bacteria 66684
156 Ga0496117_0001111 3300048920 Bacteria 40583
157 Ga0496117_0001232 3300048920 Bacteria 38326
158 Ga0496117_0001376 3300048920 Bacteria 35421
159 Ga0496117_0001851 3300048920 Bacteria 28533
160 Ga0496117_0003546 3300048920 Bacteria 18014
161 Ga0496117_0011180 3300048920 Bacteria 8060
162 Ga0496117_0015285 3300048920 Bacteria 6554
163 Ga0496117_0019145 3300048920 Bacteria 5634
164 Ga0496118_0000403 3300048921 Bacteria 72390
165 Ga0496118_0000750 3300048921 Bacteria 52525
166 Ga0496118_0001027 3300048921 Bacteria 43446
167 Ga0496118_0001633 3300048921 Bacteria 33050
168 Ga0496118_0002130 3300048921 Bacteria 27647
169 Ga0496118_0002140 3300048921 Bacteria 27569
170 Ga0496118_0003246 3300048921 Bacteria 20729
171 Ga0496118_0003340 3300048921 Bacteria 20304
172 Ga0496118_0015111 3300048921 Bacteria 7170
173 Ga0496118_0018795 3300048921 Bacteria 6206
174 Ga0496118_0024588 3300048921 Bacteria 5194
175 Ga0496118_0045947 3300048921 Bacteria 3402
176 Ga0496118_0066665 3300048921 Bacteria 2626
177 Ga0496119_0000112 3300048922 Bacteria 114767
178 Ga0496119_0000177 3300048922 Bacteria 89166
179 Ga0496119_0001108 3300048922 Bacteria 33950
180 Ga0496120_0000188 3300048923 Bacteria 105545
181 Ga0496120_0000328 3300048923 Bacteria 79028
182 Ga0496120_0001230 3300048923 Bacteria 32387
183 Ga0496121_0000314 3300048924 Bacteria 100909
184 Ga0496121_0000350 3300048924 Bacteria 96129
185 Ga0496121_0000521 3300048924 Bacteria 73374
186 Ga0496121_0000979 3300048924 Bacteria 51171
187 Ga0496121_0002623 3300048924 Bacteria 27120
188 Ga0496121_0027718 3300048924 Bacteria 5295
189 Ga0496121_0039268 3300048924 Bacteria 4175
190 Ga0496122_0000209 3300048925 Bacteria 130440
191 Ga0496122_0003379 3300048925 Bacteria 21010
192 Ga0496122_0004505 3300048925 Bacteria 17215
193 Ga0496122_0004606 3300048925 Bacteria 16975
194 Ga0496122_0006810 3300048925 Bacteria 12976
195 Ga0496122_0009350 3300048925 Bacteria 10349
196 Ga0496122_0014855 3300048925 Bacteria 7499
197 Ga0496122_0016189 3300048925 Bacteria 7081
198 Ga0496122_0034175 3300048925 Bacteria 4166
199 Ga0496123_0000106 3300048926 Bacteria 167799
200 Ga0496123_0000352 3300048926 Bacteria 86286
201 Ga0496123_0001754 3300048926 Bacteria 28633
202 Ga0496123_0004655 3300048926 Bacteria 14243
203 Ga0496123_0006395 3300048926 Bacteria 11427
204 Ga0496123_0011861 3300048926 Bacteria 7496
205 Ga0496123_0012451 3300048926 Bacteria 7251
206 Ga0496123_0012913 3300048926 Bacteria 7065
207 Ga0496123_0023055 3300048926 Bacteria 4778
208 Ga0496124_0000087 3300048927 Bacteria 200697
209 Ga0496124_0000401 3300048927 Bacteria 79057
210 Ga0496124_0000886 3300048927 Bacteria 48645
211 Ga0496124_0002726 3300048927 Bacteria 22514
212 Ga0496124_0006656 3300048927 Bacteria 12536
213 Ga0496124_0007261 3300048927 Bacteria 11819
214 Ga0496124_0008971 3300048927 Bacteria 10351
215 Ga0496124_0011845 3300048927 Bacteria 8683
216 Ga0496124_0013568 3300048927 Bacteria 7945
217 Ga0496124_0016854 3300048927 Bacteria 6923
218 Ga0496124_0017369 3300048927 Bacteria 6780
219 Ga0496124_0018236 3300048927 Bacteria 6580
220 Ga0496124_0022067 3300048927 Bacteria 5847
221 Ga0496124_0028332 3300048927 Bacteria 5011
222 Ga0496125_0000028 3300048928 Bacteria 387222
223 Ga0496125_0001176 3300048928 Bacteria 39651
224 Ga0496125_0002206 3300048928 Bacteria 25985
225 Ga0496125_0005316 3300048928 Bacteria 14394
226 Ga0496125_0006529 3300048928 Bacteria 12575
227 Ga0496125_0007932 3300048928 Bacteria 11211
228 Ga0496125_0021888 3300048928 Bacteria 5949
229 Ga0496125_0069339 3300048928 Bacteria 2768
230 Ga0496126_0000057 3300048929 Bacteria 276781
231 Ga0496126_0002462 3300048929 Bacteria 24953
232 Ga0496126_0021877 3300048929 Bacteria 6239
233 Ga0496126_0030026 3300048929 Bacteria 5158
234 Ga0501034_0000020 3300049571 Bacteria 280294
235 Ga0501040_0000097 3300049576 Bacteria 43974
236 Ga0501042_0000057 3300049578 Bacteria 39414
237 Ga0501048_0011546 3300049582 Bacteria 6587
238 nmdc:mga00v17_14700_c2 3300050491 Bacteria 4113
239 nmdc:mga00v17_15743_c1 3300050491 Bacteria 4251
240 nmdc:mga00v17_734_c1 3300050491 Bacteria 17921
241 Ga0500659_0001360 3300053135 Bacteria 15531
242 Ga0500633_0011939 3300053160 Bacteria 2382

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300053160 Ga0500633_0011939 Ga0500633_0011939_309_2357 666
2 3300037471 Ga0395905_0068175 Ga0395905_0068175_1203_3293 674
3 iso_pu_bacteria 2734482264 2735836648 746
4 3300013307 Ga0157372_10000274 Ga0157372_1000027421 749
5 3300048922 Ga0496119_0000112 Ga0496119_0000112_39157_41601 749
6 3300048923 Ga0496120_0001230 Ga0496120_0001230_9247_11691 749
7 3300048927 Ga0496124_0013568 Ga0496124_0013568_2046_4523 753
8 3300049576 Ga0501040_0000097 Ga0501040_0000097_39142_41604 758
9 3300049578 Ga0501042_0000057 Ga0501042_0000057_20247_22709 758
10 3300003794 Ga0055531_10001068 Ga0055531_1000106817 760
11 3300025303 Ga0209051_1000384 Ga0209051_100038418 760
12 3300025304 Ga0209257_1000096 Ga0209257_1000096161 760
13 3300046515 Ga0495620_0000013 Ga0495620_0000013_25127_27580 760
14 3300046519 Ga0495632_0001757 Ga0495632_0001757_4264_6717 760
15 3300046522 Ga0495643_0001199 Ga0495643_0001199_1013_3466 760
16 3300046524 Ga0495648_0000885 Ga0495648_0000885_4258_6711 760
17 3300009036 Ga0105244_10004722 Ga0105244_100047226 761
18 3300009148 Ga0105243_10024956 Ga0105243_100249562 761
19 3300025711 Ga0207696_1000022 Ga0207696_100002223 761
20 3300025728 Ga0207655_1006933 Ga0207655_10069334 761
21 3300025735 Ga0207713_1011057 Ga0207713_10110572 761
22 3300025935 Ga0207709_10012233 Ga0207709_100122333 761
23 3300048919 Ga0496116_0009529 Ga0496116_0009529_4024_6477 761
24 3300048920 Ga0496117_0001232 Ga0496117_0001232_24919_27372 761
25 3300048920 Ga0496117_0001851 Ga0496117_0001851_1380_3833 761
26 3300048921 Ga0496118_0002130 Ga0496118_0002130_3854_6307 761
27 3300048927 Ga0496124_0011845 Ga0496124_0011845_883_3336 761
28 3300048928 Ga0496125_0001176 Ga0496125_0001176_11678_14131 761
29 3300025711 Ga0207696_1005976 Ga0207696_10059763 763
30 3300031911 Ga0307412_10000227 Ga0307412_1000022718 769
31 3300048924 Ga0496121_0000314 Ga0496121_0000314_89838_92300 769
32 3300048926 Ga0496123_0023055 Ga0496123_0023055_158_2620 769
33 3300048928 Ga0496125_0000028 Ga0496125_0000028_72956_75418 769
34 3300048927 Ga0496124_0016854 Ga0496124_0016854_2131_4581 771
35 3300050491 nmdc:mga00v17_734_c1 nmdc:mga00v17_734_c1_10224_12713 777
36 3300025258 Ga0209129_1000346 Ga0209129_100034627 779
37 3300047470 Ga0495681_0012718 Ga0495681_0012718_77_2566 779
38 3300048925 Ga0496122_0000209 Ga0496122_0000209_114511_117051 781
39 3300048926 Ga0496123_0000106 Ga0496123_0000106_151865_154405 781
40 3300046460 Ga0495638_0000860 Ga0495638_0000860_13708_16155 783
41 iso_pu_bacteria 2511231024 2511376397 783
42 3300041405 Ga0439438_000320 Ga0439438_000320_1278_3731 784
43 3300048917 Ga0496114_0011345 Ga0496114_0011345_532_2985 784
44 iso_pu_bacteria 2919155634 2919159336 784
45 iso_pu_bacteria 2919404418 2919405169 784
46 iso_pu_bacteria 2765235841 2765585630 785
47 iso_pu_bacteria 3007803356 3007805060 785
48 iso_pu_bacteria 3007872151 3007874577 785
49 iso_pu_bacteria 8052494512 8052498828 785
50 iso_pu_bacteria 8054929484 8054933303 785
51 iso_pu_bacteria 8056137416 8056138642 785
52 3300006944 Ga0099823_1000376 Ga0099823_100037616 786
53 3300009011 Ga0105251_10010555 Ga0105251_100105552 786
54 3300009036 Ga0105244_10001713 Ga0105244_1000171314 786
55 3300009036 Ga0105244_10002909 Ga0105244_100029097 786
56 3300025292 Ga0209676_1000231 Ga0209676_100023151 786
57 3300025728 Ga0207655_1000399 Ga0207655_100039954 786
58 3300025728 Ga0207655_1002011 Ga0207655_100201114 786
59 3300025735 Ga0207713_1009727 Ga0207713_10097274 786
60 3300027296 Ga0209389_1000131 Ga0209389_100013149 786
61 3300042006 Ga0439432_008835 Ga0439432_008835_51_2501 786
62 3300042533 Ga0450901_000100 Ga0450901_000100_4091_6541 786
63 3300046522 Ga0495643_0000740 Ga0495643_0000740_2227_4680 786
64 3300048917 Ga0496114_0021973 Ga0496114_0021973_1338_3791 786
65 3300048920 Ga0496117_0001376 Ga0496117_0001376_31661_34114 786
66 3300048921 Ga0496118_0024588 Ga0496118_0024588_1359_3812 786
67 3300048925 Ga0496122_0004606 Ga0496122_0004606_11374_13827 786
68 3300048926 Ga0496123_0001754 Ga0496123_0001754_23032_25485 786
69 3300048927 Ga0496124_0006656 Ga0496124_0006656_8117_10570 786
70 3300048928 Ga0496125_0007932 Ga0496125_0007932_1420_3870 786
71 3300048928 Ga0496125_0069339 Ga0496125_0069339_137_2599 786
72 3300049571 Ga0501034_0000020 Ga0501034_0000020_251563_254013 786
73 3300053135 Ga0500659_0001360 Ga0500659_0001360_3086_5536 786
74 3300003578 Ga0006562J51391_1132138 Ga0006562J51391_11321384 787
75 3300048919 Ga0496116_0038603 Ga0496116_0038603_362_2824 787
76 3300048924 Ga0496121_0027718 Ga0496121_0027718_2028_4490 787
77 3300048926 Ga0496123_0000352 Ga0496123_0000352_23778_26240 787
78 iso_pu_bacteria 2818991440 2819563063 787
79 iso_pu_bacteria 2904463128 2904463679 787
80 iso_pu_bacteria 8055878733 8055884134 787
81 3300025304 Ga0209257_1000492 Ga0209257_100049245 788
82 3300025904 Ga0207647_10000168 Ga0207647_1000016841 788
83 3300037471 Ga0395905_0039279 Ga0395905_0039279_218_2797 788
84 3300046519 Ga0495632_0000003 Ga0495632_0000003_361769_364207 788
85 3300047472 Ga0495686_0000019 Ga0495686_0000019_329053_331491 788
86 3300048919 Ga0496116_0047342 Ga0496116_0047342_32_2470 788
87 3300048920 Ga0496117_0019145 Ga0496117_0019145_3165_5603 788
88 3300048921 Ga0496118_0000750 Ga0496118_0000750_45293_47731 788
89 3300048921 Ga0496118_0001027 Ga0496118_0001027_32310_34748 788
90 3300048924 Ga0496121_0000350 Ga0496121_0000350_90952_93390 788
91 3300048925 Ga0496122_0034175 Ga0496122_0034175_1364_3802 788
92 3300048926 Ga0496123_0011861 Ga0496123_0011861_4425_6863 788
93 3300048929 Ga0496126_0021877 Ga0496126_0021877_2286_4724 788
94 iso_pu_bacteria 2884338543 2884340284 788
95 iso_pu_bacteria 2941471342 2941473535 788
96 3300003320 rootH2_10166466 rootH2_101664663 789
97 3300005262 Ga0065165_1000565 Ga0065165_100056533 789
98 3300014497 Ga0182008_10018960 Ga0182008_100189601 789
99 3300015261 Ga0182006_1000057 Ga0182006_100005795 789
100 3300017792 Ga0163161_10005992 Ga0163161_100059928 789
101 3300025254 Ga0209148_1001097 Ga0209148_100109711 789
102 3300025299 Ga0209256_1009969 Ga0209256_10099692 789
103 3300041413 Ga0439465_0000061 Ga0439465_0000061_16979_19420 789
104 3300042184 Ga0450908_000017 Ga0450908_000017_16429_18870 789
105 3300044672 Ga0466982_0000138 Ga0466982_0000138_953_3394 789
106 3300044735 Ga0466968_0002561 Ga0466968_0002561_3207_5651 789
107 3300046452 Ga0495617_000095 Ga0495617_000095_26382_28823 789
108 3300046471 Ga0495650_0001350 Ga0495650_0001350_16523_18964 789
109 3300046471 Ga0495650_0014160 Ga0495650_0014160_798_3239 789
110 3300046491 Ga0495584_0017280 Ga0495584_0017280_592_3033 789
111 3300046501 Ga0495607_0000068 Ga0495607_0000068_22164_24602 789
112 3300046507 Ga0495606_0000275 Ga0495606_0000275_54820_57261 789
113 3300046507 Ga0495606_0000388 Ga0495606_0000388_9096_11537 789
114 3300046507 Ga0495606_0002743 Ga0495606_0002743_9162_11603 789
115 3300046513 Ga0495616_0000062 Ga0495616_0000062_82789_85230 789
116 3300046515 Ga0495620_0000368 Ga0495620_0000368_8769_11210 789
117 3300046518 Ga0495631_0000702 Ga0495631_0000702_12221_14662 789
118 3300046524 Ga0495648_0006816 Ga0495648_0006816_1407_3848 789
119 3300046616 Ga0495668_0004459 Ga0495668_0004459_4158_6599 789
120 3300046648 Ga0495611_0001076 Ga0495611_0001076_5458_7899 789
121 3300046660 Ga0495625_0006754 Ga0495625_0006754_6231_8672 789
122 3300046810 Ga0495660_0000367 Ga0495660_0000367_9436_11877 789
123 3300047323 Ga0495683_0003496 Ga0495683_0003496_1047_3488 789
124 3300047469 Ga0495673_0000001 Ga0495673_0000001_1202089_1204530 789
125 3300047469 Ga0495673_0000030 Ga0495673_0000030_6792_9233 789
126 3300047472 Ga0495686_0000175 Ga0495686_0000175_17774_20215 789
127 3300047472 Ga0495686_0014166 Ga0495686_0014166_2453_4894 789
128 3300048904 Ga0496101_0000410 Ga0496101_0000410_21737_24178 789
129 3300048909 Ga0496106_0000420 Ga0496106_0000420_15747_18188 789
130 3300048924 Ga0496121_0000521 Ga0496121_0000521_63100_65541 789
131 3300048924 Ga0496121_0000979 Ga0496121_0000979_29330_31771 789
132 3300048925 Ga0496122_0006810 Ga0496122_0006810_9567_12008 789
133 3300048925 Ga0496122_0014855 Ga0496122_0014855_1950_4388 789
134 3300048927 Ga0496124_0028332 Ga0496124_0028332_1942_4380 789
135 iso_pu_bacteria 2593339238 2595445896 789
136 iso_pu_bacteria 2593339239 2595452612 789
137 iso_pu_bacteria 2718218334 2721027775 789
138 iso_pu_bacteria 2842914999 2842916235 789
139 iso_pu_bacteria 2953994433 2953994869 789
140 3300005327 Ga0070658_10001381 Ga0070658_1000138114 790
141 3300005548 Ga0070665_100007769 Ga0070665_1000077696 790
142 3300009551 Ga0105238_10000702 Ga0105238_1000070221 790
143 3300025909 Ga0207705_10003128 Ga0207705_100031285 790
144 3300025924 Ga0207694_10001036 Ga0207694_100010368 790
145 3300028379 Ga0268266_10000021 Ga0268266_10000021249 790
146 3300048918 Ga0496115_0000293 Ga0496115_0000293_19213_21654 790
147 3300048924 Ga0496121_0039268 Ga0496121_0039268_920_3364 790
148 3300048929 Ga0496126_0000057 Ga0496126_0000057_133635_136076 790
149 iso_pu_bacteria 2919513703 2919515344 790
150 iso_pu_bacteria 2919675420 2919675717 790
151 3300048919 Ga0496116_0000205 Ga0496116_0000205_14181_16655 791
152 3300048927 Ga0496124_0000401 Ga0496124_0000401_63202_65742 791
153 3300049582 Ga0501048_0011546 Ga0501048_0011546_1787_4234 791
154 iso_pu_bacteria 2643221621 2644124297 791
155 iso_pu_bacteria 2857537821 2857540427 791
156 3300009011 Ga0105251_10003039 Ga0105251_100030398 792
157 3300013104 Ga0157370_10000184 Ga0157370_1000018434 792
158 3300015265 Ga0182005_1000096 Ga0182005_100009636 792
159 3300025735 Ga0207713_1002783 Ga0207713_10027838 792
160 3300025925 Ga0207650_10024696 Ga0207650_100246963 792
161 3300047472 Ga0495686_0014846 Ga0495686_0014846_1687_4164 792
162 3300048920 Ga0496117_0011180 Ga0496117_0011180_4356_6899 792
163 3300048921 Ga0496118_0045947 Ga0496118_0045947_302_2752 792
164 3300048921 Ga0496118_0066665 Ga0496118_0066665_35_2578 792
165 3300048922 Ga0496119_0000177 Ga0496119_0000177_9984_12527 792
166 3300048923 Ga0496120_0000328 Ga0496120_0000328_13384_15927 792
167 iso_pu_bacteria 2576861471 2578457469 792
168 iso_pu_bacteria 2852649853 2852649894 792
169 iso_pu_bacteria 2919085039 2919085636 792
170 iso_pu_bacteria 2941475908 2941476761 792
171 iso_pu_bacteria 2599185292 2599907466 793
172 iso_pu_bacteria 2643221594 2643981072 793
173 iso_pu_bacteria 2808606395 2809034940 793
174 iso_pu_bacteria 2895522137 2895522881 793
175 iso_pu_bacteria 2941479691 2941485151 793
176 3300003856 Ga0058692_1000024 Ga0058692_100002422 794
177 3300025299 Ga0209256_1007580 Ga0209256_10075803 794
178 3300027312 Ga0209371_1000016 Ga0209371_1000016547 794
179 3300030500 Ga0268256_1000015 Ga0268256_100001522 794
180 3300003791 Ga0055530_10003102 Ga0055530_100031026 796
181 3300003794 Ga0055531_10004372 Ga0055531_100043722 796
182 3300013102 Ga0157371_10000320 Ga0157371_1000032019 796
183 3300015261 Ga0182006_1011068 Ga0182006_10110684 796
184 3300015262 Ga0182007_10000128 Ga0182007_100001287 796
185 3300015265 Ga0182005_1000588 Ga0182005_10005887 796
186 3300026078 Ga0207702_10018063 Ga0207702_100180635 796
187 3300030742 Ga0316183_1209112 Ga0316183_12091123 796
188 3300046453 Ga0495627_002828 Ga0495627_002828_361_2808 796
189 3300046460 Ga0495638_0005023 Ga0495638_0005023_4041_6488 796
190 3300046512 Ga0495610_0001283 Ga0495610_0001283_10091_12538 796
191 3300046518 Ga0495631_0001828 Ga0495631_0001828_6015_8462 796
192 3300046522 Ga0495643_0000210 Ga0495643_0000210_3577_6024 796
193 3300046525 Ga0495663_0000616 Ga0495663_0000616_4560_7007 796
194 3300046810 Ga0495660_0002183 Ga0495660_0002183_6227_8674 796
195 3300047320 Ga0495672_0000073 Ga0495672_0000073_11735_14182 796
196 3300047472 Ga0495686_0012686 Ga0495686_0012686_1468_3915 796
197 3300048919 Ga0496116_0005714 Ga0496116_0005714_5961_8408 796
198 3300048919 Ga0496116_0012341 Ga0496116_0012341_2647_5094 796
199 3300048920 Ga0496117_0000476 Ga0496117_0000476_13497_15941 796
200 3300048920 Ga0496117_0001111 Ga0496117_0001111_2593_5040 796
201 3300048920 Ga0496117_0003546 Ga0496117_0003546_12894_15341 796
202 3300048920 Ga0496117_0015285 Ga0496117_0015285_1501_3948 796
203 3300048921 Ga0496118_0000403 Ga0496118_0000403_13494_15938 796
204 3300048921 Ga0496118_0001633 Ga0496118_0001633_2674_5121 796
205 3300048921 Ga0496118_0002140 Ga0496118_0002140_21520_23967 796
206 3300048921 Ga0496118_0003246 Ga0496118_0003246_4548_6995 796
207 3300048921 Ga0496118_0003340 Ga0496118_0003340_2593_5040 796
208 3300048921 Ga0496118_0015111 Ga0496118_0015111_2071_4518 796
209 3300048921 Ga0496118_0018795 Ga0496118_0018795_945_3392 796
210 3300048922 Ga0496119_0001108 Ga0496119_0001108_13523_15970 796
211 3300048923 Ga0496120_0000188 Ga0496120_0000188_13507_15954 796
212 3300048924 Ga0496121_0002623 Ga0496121_0002623_10971_13418 796
213 3300048925 Ga0496122_0003379 Ga0496122_0003379_3878_6325 796
214 3300048925 Ga0496122_0009350 Ga0496122_0009350_5393_7840 796
215 3300048925 Ga0496122_0016189 Ga0496122_0016189_2510_4957 796
216 3300048926 Ga0496123_0006395 Ga0496123_0006395_2634_5081 796
217 3300048926 Ga0496123_0012451 Ga0496123_0012451_2168_4615 796
218 3300048926 Ga0496123_0012913 Ga0496123_0012913_2510_4957 796
219 3300048927 Ga0496124_0000886 Ga0496124_0000886_34091_36538 796
220 3300048927 Ga0496124_0002726 Ga0496124_0002726_475_2922 796
221 3300048927 Ga0496124_0007261 Ga0496124_0007261_5519_7966 796
222 3300048927 Ga0496124_0008971 Ga0496124_0008971_5192_7636 796
223 3300048927 Ga0496124_0017369 Ga0496124_0017369_3444_5891 796
224 3300048927 Ga0496124_0018236 Ga0496124_0018236_1540_3987 796
225 3300048927 Ga0496124_0022067 Ga0496124_0022067_800_3247 796
226 3300048928 Ga0496125_0002206 Ga0496125_0002206_4171_6618 796
227 3300048928 Ga0496125_0005316 Ga0496125_0005316_9341_11788 796
228 3300048928 Ga0496125_0006529 Ga0496125_0006529_3710_6157 796
229 3300048928 Ga0496125_0021888 Ga0496125_0021888_3125_5572 796
230 3300048929 Ga0496126_0002462 Ga0496126_0002462_19460_21907 796
231 iso_pu_bacteria 2643221569 2643860989 796
232 iso_pu_bacteria 2818991457 2819660241 796
233 iso_pu_bacteria 2904479285 2904480643 796
234 3300025292 Ga0209676_1000034 Ga0209676_1000034280 797
235 3300025298 Ga0209050_1003858 Ga0209050_10038583 797
236 3300025972 Ga0207668_10033159 Ga0207668_100331592 797
237 3300048917 Ga0496114_0012375 Ga0496114_0012375_466_2925 797
238 3300048929 Ga0496126_0030026 Ga0496126_0030026_1075_3534 797
239 3300050491 nmdc:mga00v17_15743_c1 nmdc:mga00v17_15743_c1_244_2727 797
240 iso_pu_bacteria 2747842501 2748017274 797
241 iso_pu_bacteria 2852684882 2852684940 797
242 iso_pu_bacteria 2919130084 2919130482 797
243 iso_pu_bacteria 2929195423 2929198511 797
244 iso_pu_bacteria 8021622325 8021625329 797
245 iso_pu_bacteria 8021648035 8021649202 797
246 3300032004 Ga0307414_10001812 Ga0307414_100018127 798
247 iso_pu_bacteria 2857442823 2857444669 798
248 iso_pu_bacteria 2939589442 2939591261 798
249 iso_pu_bacteria 2939622612 2939626784 798
250 iso_pu_bacteria 2974307012 2974308089 798
251 iso_pu_bacteria 2977247770 2977248822 798
252 3300025735 Ga0207713_1012232 Ga0207713_10122324 799
253 iso_pu_bacteria 2842757796 2842759483 799
254 3300003794 Ga0055531_10006918 Ga0055531_100069185 800
255 3300025304 Ga0209257_1000320 Ga0209257_100032063 800
256 3300009148 Ga0105243_10005058 Ga0105243_100050584 801
257 3300025935 Ga0207709_10007061 Ga0207709_100070615 801
258 3300038705 Ga0237819_00315 Ga0237819_00315_10666_13122 801
259 3300046507 Ga0495606_0008487 Ga0495606_0008487_6261_8816 801
260 3300048925 Ga0496122_0004505 Ga0496122_0004505_12738_15251 801
261 3300048926 Ga0496123_0004655 Ga0496123_0004655_9459_11972 801
262 3300048927 Ga0496124_0000087 Ga0496124_0000087_66929_69436 801
263 iso_pu_bacteria 2842780639 2842783761 801
264 3300003771 Ga0055526_1003734 Ga0055526_10037348 802
265 3300003781 Ga0055536_1001722 Ga0055536_10017228 802
266 3300003781 Ga0055536_1001780 Ga0055536_10017808 802
267 3300003790 Ga0055528_1000867 Ga0055528_100086715 802
268 3300003791 Ga0055530_10002899 Ga0055530_100028996 802
269 3300003794 Ga0055531_10002306 Ga0055531_100023066 802
270 3300003794 Ga0055531_10002461 Ga0055531_100024618 802
271 3300013104 Ga0157370_10005405 Ga0157370_1000540510 802
272 3300014497 Ga0182008_10000045 Ga0182008_1000004519 802
273 3300017792 Ga0163161_10003693 Ga0163161_100036936 802
274 3300025263 Ga0209565_1000119 Ga0209565_100011917 802
275 3300025273 Ga0209673_1000866 Ga0209673_100086611 802
276 3300025291 Ga0209675_1000048 Ga0209675_100004843 802
277 3300025292 Ga0209676_1000091 Ga0209676_100009134 802
278 3300025292 Ga0209676_1000355 Ga0209676_100035517 802
279 3300025295 Ga0209564_1000106 Ga0209564_1000106144 802
280 3300025298 Ga0209050_1000175 Ga0209050_100017519 802
281 3300025298 Ga0209050_1000206 Ga0209050_1000206113 802
282 3300025303 Ga0209051_1004856 Ga0209051_10048564 802
283 3300025304 Ga0209257_1000062 Ga0209257_1000062173 802
284 3300025304 Ga0209257_1000745 Ga0209257_100074534 802
285 3300025304 Ga0209257_1002308 Ga0209257_10023085 802
286 3300025304 Ga0209257_1013895 Ga0209257_10138953 802
287 iso_pu_bacteria 2895511927 2895512873 802
288 iso_pu_bacteria 2895525241 2895525347 802
289 3300046525 Ga0495663_0002034 Ga0495663_0002034_1931_4387 803
290 3300046558 Ga0495633_0004635 Ga0495633_0004635_1179_3635 803
291 3300050491 nmdc:mga00v17_14700_c2 nmdc:mga00v17_14700_c2_43_2592 803
292 3300003320 rootH2_10008460 rootH2_1000846012 804
293 3300003323 rootH1_10080861 rootH1_100808615 804

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF19306

Lhr_WH

Helicase Lhr winged helix domain

401

568

0.97

PF08494

DEAD_assoc

DEAD/H associated

615

789

0.95

PF00271

Helicase_C

Helicase conserved C-terminal domain

267

378

0.88

PF00270

DEAD

DEAD/DEAH box helicase

35

222

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
1t6n-assembly1.cif.gz_B crystal structure of the n-terminal domain of human uap56 0.7997 9 220
2db3-assembly2.cif.gz_B structural basis for rna unwinding by the dead-box protein drosophila vasa 0.7954 9 388
7aud-assembly5.cif.gz_D structure of an engineered helicase domain construct for human bloom syndrome protein (blm) 0.7859 28 369
2p6n-assembly1.cif.gz_A human dead-box rna helicase ddx41, helicase domain 0.7859 226 368
3fe2-assembly2.cif.gz_B human dead-box rna helicase ddx5 (p68), conserved domain i in complex with adp 0.7839 9 198
ID Description Score Start End Superfamily
af_P30015_273_429_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8682 251 367 3.40.50.300
af_I1KZI0_21_231_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8604 19 203 3.40.50.300
af_Q55BR9_2_209_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8575 10 198 3.40.50.300
af_Q9FT69_484_600_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8547 262 367 3.40.50.300
af_Q8L4E9_52_282_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8478 8 217 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A4Q2ZUM0-F1-model_v4 DEAD/DEAH box helicase 0.966 9 202 GO:0003677
GO:0004386
GO:0005524
GO:0016887
AF-A0A7V9E0H3-F1-model_v4 DEAD/DEAH box helicase 0.9597 11 185 GO:0003677
GO:0004386
GO:0005524
GO:0016887
AF-A0A0R0CQG9-F1-model_v4 DEAD/DEAH box helicase 0.9455 1 804 GO:0003677
GO:0004386
GO:0005524
GO:0016887
AF-A0A2W6IXE4-F1-model_v4 DNA ligase-associated DEXH box helicase 0.9448 1 804 GO:0003677
GO:0005524
GO:0016874
GO:0016887
AF-A0A0R0CQG9-F1-model_v4 DEAD/DEAH box helicase 0.9443 1 804 GO:0003677
GO:0004386
GO:0005524
GO:0016887

Feature Viewer

pLDDT pTM Quality
80.5 0.69 Medium
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Predicted Structure (AlphaFold2)

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