F391692

General Info

Members Datasets Scaffolds Average Seq Length
293 212 225 299

Family's Representative Sequence

Representative Sequence 3300048088|Ga0495602_0148169|Ga0495602_0148169_735_1814
Length 359
Sequence MAIARVIDDDRINLRDVYIHDCSLRSTCRLDGMEASLLSNNSAINNGKENVLLLPGETMQNLDALLIFARVAEMTSFTRAAESLGMQKGRVSLVIRELERDVGATLLHRTTRSVQLTEDGRAFYSRARDVLAEVEDLQSMFAGNGAPLRGTLRVDMPTELARGVVFPALPELIAAHPELELELSSTDRRVDLVHEGFDCVIRLGPIVDETLIARPLGKLRMTNAASPSYLARYGMPHTLHDLRSQGHRMVHYAETLGSRHAGWEYPAGDGYASLPLPGSIQVNSVQTYHAAGLAGIGLIQAGYSALAHHIESGELVEVLPNLRPEPLSASLLVAHRRNLSQRVRAFMNWLEKVLEPYFD

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2506520007 Serratia plymuthica AS9 Isolate Rhizosphere
3 2506520008 Serratia plymuthica AS12 Isolate Unclassified
4 2508501125 Burkholderia sp. WSM2232 Isolate Nodule
5 2510917022 Rhizobium sp. AP16 Isolate Rhizosphere
6 2519103095 Burkholderia sp. KJ006 Isolate Nodule
7 2582581283 Rhizobium sp. OK665 Isolate Rhizosphere
8 2582581306 Rhizobium sp. YR295 Isolate Rhizosphere
9 2582581307 Rhizobium sp. YR060 Isolate Rhizosphere
10 2582581311 Burkholderia sp. WP42 Isolate Rhizosphere
11 2582581865 Rhizobium sp. CF258 Isolate Rhizosphere
12 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
13 2585427531 Agrobacterium rhizogenes YR530 Isolate Rhizosphere
14 2585427609 Agrobacterium rhizogenes CF263 Isolate Rhizosphere
15 2585428125 Agrobacterium rhizogenes CF262 Isolate Rhizosphere
16 2599185239 Burkholderia sp. NFACC38-1 Isolate Rhizoplane
17 2599185240 Burkholderia sp. NFPP32 Isolate Rhizoplane
18 2599185355 Burkholderia sp. NFACC33-1 Isolate Rhizoplane
19 2643221607 Rhizobium sp. Root73 Isolate Unclassified
20 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
21 2643221686 Rhizobium sp. Root1334 Isolate Unclassified
22 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
23 2654587920 Serratia plymuthica HRO-C48 Isolate Rhizosphere
24 2667528172 Enterobacteriaceae bacterium NFIX31 Isolate Rhizoplane
25 2675903129 Burkholderia pyrrocinia NFIX32 Isolate Rhizoplane
26 2681812869 Enterobacter ludwigii NFPP41 Isolate Rhizoplane
27 2718217927 Rhizobium sp. N324 Isolate Nodule
28 2718218423 Rhizobium sp. N941 Isolate Nodule
29 2721755763 Pandoraea thiooxydans ATSB16 Isolate Rhizosphere
30 2721755809 Rhizobium sp. N541 Isolate Nodule
31 2738541276 Cellvibrio sp. YR554 Isolate Unclassified
32 2765235842 Enterobacter ludwigii AA4 Isolate Unclassified
33 2816332253 Burkholderia vietnamiensis HI2297 Isolate Unclassified
34 2816332256 Burkholderia vietnamiensis MSMB608WGS Isolate Unclassified
35 2816332286 Burkholderia vietnamiensis HI2221 Isolate Rhizosphere
36 2818991452 Burkholderia cepacia 561 Isolate Unclassified
37 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
38 2823373977 Enterobacter ludwigii NCR3 Isolate Rhizosphere
39 2826581358 Pseudomonas viridiflava CDRTc14 Isolate Unclassified
40 2842395702 Rhizobium ecuadorense SEMIA 4029 Isolate Nodule
41 2842747753 Variovorax sp. R-72060 Isolate Unclassified
42 2842849001 Pseudomonas sp. R-72008 Isolate Unclassified
43 2863421361 Burkholderia cenocepacia CACua-24 Isolate Rhizosphere
44 2869551831 Serratia inhibens PRI-2C Isolate Rhizosphere
45 2870068957 Burkholderia sp. JP2-270 Isolate Unclassified
46 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
47 2904564687 Burkholderia sp. 571 Isolate Unclassified
48 2904571731 Burkholderia cenocepacia 574 Isolate Unclassified
49 2919476304 Duganella sp. 3397 Isolate Unclassified
50 2928163908 Burkholderia sp. 567 Isolate Unclassified
51 2928170801 Burkholderia sp. 572 Isolate Unclassified
52 2928536128 Burkholderia sola 565 Isolate Unclassified
53 2939617950 Kosakonia cowanii 2056 Isolate Rhizosphere
54 2974310843 Enterobacter sp. SORGH_AS 287 Isolate Unclassified
55 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
56 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
57 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
58 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
59 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
60 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
61 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
62 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
63 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
64 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
65 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
66 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
67 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
68 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
69 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
70 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
71 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
72 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
73 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
74 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
75 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
76 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
77 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
78 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
79 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
80 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
81 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
82 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
83 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
84 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
85 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
86 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
87 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
88 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
89 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
90 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
91 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
92 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
93 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
94 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
95 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
96 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
97 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
98 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
99 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
100 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
101 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
102 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
103 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
104 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
105 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
106 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
107 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
108 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
109 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
110 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
111 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
112 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
113 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
114 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
115 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
116 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
118 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
119 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
122 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
123 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
124 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
125 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
126 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
127 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
128 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
129 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
130 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
131 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
132 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
133 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
134 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
135 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
136 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
137 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
138 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
139 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
140 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
141 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
142 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
143 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
144 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
145 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
146 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
147 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
148 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
149 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
150 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
151 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
152 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
153 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
154 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
155 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
156 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
157 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
158 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
159 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
160 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
161 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
162 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
163 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
164 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
165 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
166 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
167 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
168 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
169 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
170 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
171 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
172 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
173 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
174 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
175 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
176 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
177 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
178 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
179 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
180 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
181 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
182 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
183 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
184 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
185 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
186 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
187 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
188 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
189 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
190 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
191 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
192 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
193 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
194 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
195 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
196 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
197 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
198 8005275841 Rhizobium sp. N4311 Isolate Nodule
199 8005556819 Rhizobium sp. WYCCWR 11128 Isolate Nodule
200 8005563573 Rhizobium sp. WYCCWR 11152 Isolate Nodule
201 8005695170 Rhizobium sp. RMa-01 Isolate Unclassified
202 8018163183 Rhizobium sp. WYCCWR 11146 Isolate Nodule
203 8018405270 Enterobacter sp. 198 Isolate Rhizosphere
204 8018845410 Burkholderia reimsis BE51 Isolate Rhizosphere
205 8019504834 Atlantibacter hermannii 1903 Isolate Rhizosphere
206 8020807995 Burkholderia sp. B10 Isolate Rhizosphere
207 8020938398 Burkholderia sp. BE12 Isolate Rhizosphere
208 8020945358 Burkholderia sp. BE17 Isolate Rhizosphere
209 8020953355 Burkholderia sp. BE24 Isolate Rhizosphere
210 8021120328 Burkholderia sp. LS-044 Isolate Rhizosphere
211 8040167225 Burkholderia vietnamiensis RS1 Isolate Unclassified
212 8040173305 Burkholderia vietnamiensis BE10 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.79
Metatranscriptomes 0
Isolates 23.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.36
Nodule 3.41
Rhizoplane 4.44
Rhizosphere 49.83
Stem 0
Stem Tuber 0
Unclassified 26.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_668471 2162886007 Bacteria 8103
2 JGI24740J21852_10001109 3300001979 Bacteria 12163
3 rootH2_10052331 3300003320 Bacteria 11944
4 rootL2_10290445 3300003322 Bacteria 1523
5 Ga0055538_1001918 3300003751 Bacteria 3445
6 Ga0055539_1000293 3300003752 Bacteria 27556
7 Ga0055533_1003345 3300003756 Bacteria 3256
8 Ga0055532_1000237 3300003758 Bacteria 40420
9 Ga0055525_1000353 3300003759 Bacteria 32699
10 Ga0055527_1000040 3300003760 Bacteria 118145
11 Ga0055527_1000085 3300003760 Bacteria 73489
12 Ga0055535_1000036 3300003761 Bacteria 162035
13 Ga0055535_1000154 3300003761 Bacteria 73489
14 Ga0055542_1000061 3300003762 Bacteria 162035
15 Ga0055542_1003602 3300003762 Bacteria 4098
16 Ga0055529_1000069 3300003763 Bacteria 162035
17 Ga0055528_1005982 3300003790 Bacteria 5573
18 Ga0055541_1002751 3300003841 Bacteria 3426
19 Ga0058692_1007697 3300003856 Bacteria 2837
20 Ga0065714_10013183 3300005288 Bacteria 2199
21 Ga0065712_10067846 3300005290 Bacteria 26205
22 Ga0070670_100000048 3300005331 Bacteria 132947
23 Ga0070661_100000708 3300005344 Bacteria 24429
24 Ga0070669_100050857 3300005353 Bacteria 3027
25 Ga0070663_100000336 3300005455 Bacteria 24425
26 Ga0070665_100001044 3300005548 Bacteria 34690
27 Ga0070664_100000787 3300005564 Bacteria 24429
28 Ga0068856_100103318 3300005614 Bacteria 2843
29 Ga0068852_100079530 3300005616 Bacteria 2904
30 Ga0075363_100051342 3300006048 Bacteria 2199
31 Ga0075364_10012214 3300006051 Bacteria 5247
32 Ga0075367_10005561 3300006178 Bacteria 6278
33 Ga0075367_10070946 3300006178 Bacteria 2095
34 Ga0105251_10002880 3300009011 Bacteria 12969
35 Ga0105251_10007000 3300009011 Bacteria 7046
36 Ga0105244_10000625 3300009036 Bacteria 31364
37 Ga0105244_10006635 3300009036 Bacteria 7456
38 Ga0105244_10136212 3300009036 Bacteria 1183
39 Ga0105250_10001366 3300009092 Bacteria 13242
40 Ga0105240_10000553 3300009093 Bacteria 69247
41 Ga0105240_10000985 3300009093 Bacteria 50823
42 Ga0105240_10001505 3300009093 Bacteria 39693
43 Ga0105240_10227410 3300009093 Bacteria 2170
44 Ga0105247_10000030 3300009101 Bacteria 187803
45 Ga0105241_10409632 3300009174 Bacteria 1191
46 Ga0105241_10414578 3300009174 Bacteria 1184
47 Ga0105239_10000080 3300010375 Bacteria 134982
48 Ga0157373_10001660 3300013100 Bacteria 16991
49 Ga0157371_10001472 3300013102 Bacteria 24434
50 Ga0157370_10000002 3300013104 Bacteria 431400
51 Ga0157372_10001617 3300013307 Bacteria 24435
52 Ga0182006_1005358 3300015261 Bacteria 6134
53 Ga0182007_10000975 3300015262 Bacteria 15724
54 Ga0183363_1043 3300015690 Bacteria 40750
55 Ga0163161_10000031 3300017792 Bacteria 166584
56 Ga0163161_10096873 3300017792 Bacteria 2190
57 Ga0213872_10002152 3300021361 Bacteria 11812
58 Ga0213872_10017967 3300021361 Bacteria 3263
59 Ga0213872_10049612 3300021361 Bacteria 1906
60 Ga0209784_100024 3300025224 Bacteria 394613
61 Ga0209566_100018 3300025225 Bacteria 448638
62 Ga0209566_100274 3300025225 Bacteria 48108
63 Ga0209674_100046 3300025226 Bacteria 357920
64 Ga0209674_105569 3300025226 Bacteria 1836
65 Ga0209672_100035 3300025228 Bacteria 303111
66 Ga0209672_100040 3300025228 Bacteria 278858
67 Ga0209147_100037 3300025229 Bacteria 326977
68 Ga0209147_100041 3300025229 Bacteria 303111
69 Ga0209147_100048 3300025229 Bacteria 278858
70 Ga0209563_100039 3300025230 Bacteria 409717
71 Ga0209258_100063 3300025242 Bacteria 303577
72 Ga0209258_100070 3300025242 Bacteria 278858
73 Ga0209677_100024 3300025253 Bacteria 406035
74 Ga0209148_1000088 3300025254 Bacteria 258188
75 Ga0209148_1000311 3300025254 Bacteria 69457
76 Ga0209759_1004089 3300025256 Bacteria 5574
77 Ga0209759_1004321 3300025256 Bacteria 5343
78 Ga0209129_1000018 3300025258 Bacteria 469298
79 Ga0209565_1002689 3300025263 Bacteria 6217
80 Ga0209455_1000075 3300025272 Bacteria 285430
81 Ga0209455_1000351 3300025272 Bacteria 43193
82 Ga0209673_1000061 3300025273 Bacteria 262274
83 Ga0209025_1002133 3300025294 Bacteria 22211
84 Ga0209256_1000287 3300025299 Bacteria 88526
85 Ga0209051_1007243 3300025303 Bacteria 6097
86 Ga0207696_1000001 3300025711 Bacteria 2579611
87 Ga0207655_1018746 3300025728 Bacteria 3653
88 Ga0207713_1000022 3300025735 Bacteria 351775
89 Ga0207713_1010661 3300025735 Bacteria 5065
90 Ga0207710_10000068 3300025900 Bacteria 152636
91 Ga0207695_10000529 3300025913 Bacteria 80214
92 Ga0207695_10000912 3300025913 Bacteria 53029
93 Ga0207695_10001440 3300025913 Bacteria 39881
94 Ga0207695_10067793 3300025913 Bacteria 3659
95 Ga0207649_10000075 3300025920 Bacteria 83915
96 Ga0207681_10066455 3300025923 Bacteria 2496
97 Ga0207650_10000187 3300025925 Bacteria 72348
98 Ga0207679_10000267 3300025945 Bacteria 39861
99 Ga0207678_10001137 3300026067 Bacteria 24387
100 Ga0207702_10001353 3300026078 Bacteria 24432
101 Ga0207698_10227449 3300026142 Bacteria 1691
102 Ga0209371_1000041 3300027312 Bacteria 340377
103 Ga0209371_1000226 3300027312 Bacteria 73506
104 Ga0209371_1001693 3300027312 Bacteria 13989
105 Ga0268266_10015039 3300028379 Bacteria 6643
106 Ga0307515_10003918 3300028794 Bacteria 31060
107 Ga0307515_10004543 3300028794 Bacteria 28621
108 Ga0307515_10178186 3300028794 Bacteria 2087
109 Ga0268256_1000003 3300030500 Bacteria 1289401
110 Ga0268256_1000006 3300030500 Bacteria 1063991
111 Ga0268256_1000187 3300030500 Bacteria 73516
112 Ga0316181_1030846 3300030744 Bacteria 3540
113 Ga0307510_10000293 3300033180 Bacteria 46132
114 Ga0436361_0191986 3300039447 Bacteria 7353
115 Ga0436361_0584902 3300039447 Bacteria 2359
116 Ga0436361_0654596 3300039447 Bacteria 2025
117 Ga0436361_0773716 3300039447 Bacteria 1589
118 Ga0436361_0848090 3300039447 Bacteria 48566
119 Ga0439452_000008 3300042010 Bacteria 569877
120 Ga0439452_000014 3300042010 Bacteria 344969
121 Ga0466966_0005177 3300044684 Bacteria 8570
122 Ga0466961_0067998 3300044693 Unclassified 2262
123 Ga0466964_0010110 3300044706 Bacteria 3556
124 Ga0466971_0000728 3300044719 Bacteria 13167
125 Ga0466968_0074559 3300044735 Unclassified 1482
126 Ga0466970_0012598 3300044765 Bacteria 4326
127 Ga0466957_0036710 3300044842 Unclassified 2948
128 Ga0466959_0049121 3300045049 Unclassified 3099
129 Ga0495627_000019 3300046453 Bacteria 309691
130 Ga0495651_0008039 3300046462 Bacteria 8087
131 Ga0495650_0000005 3300046471 Bacteria 766553
132 Ga0495650_0007489 3300046471 Bacteria 6547
133 Ga0495605_0000749 3300046474 Bacteria 23822
134 Ga0495585_0000469 3300046492 Bacteria 38600
135 Ga0495607_0005082 3300046501 Bacteria 9521
136 Ga0495606_0003191 3300046507 Bacteria 17682
137 Ga0495610_0014231 3300046512 Bacteria 4684
138 Ga0495610_0084628 3300046512 Bacteria 1449
139 Ga0495628_0050360 3300046516 Bacteria 3294
140 Ga0495630_0007414 3300046517 Bacteria 7837
141 Ga0495631_0001579 3300046518 Bacteria 13686
142 Ga0495632_0076066 3300046519 Bacteria 1606
143 Ga0495643_0014455 3300046522 Bacteria 4697
144 Ga0495666_0010999 3300046526 Bacteria 4514
145 Ga0495652_0032991 3300046529 Bacteria 4525
146 Ga0495654_0004977 3300046530 Bacteria 7803
147 Ga0495609_0006833 3300046538 Bacteria 5766
148 Ga0495609_0013245 3300046538 Bacteria 3899
149 Ga0495633_0000009 3300046558 Bacteria 293183
150 Ga0495634_0164547 3300046642 Bacteria 1397
151 Ga0495625_0069862 3300046660 Bacteria 2467
152 Ga0495659_0152053 3300046664 Bacteria 930
153 Ga0495599_0022569 3300046678 Bacteria 3929
154 Ga0495624_0003245 3300046690 Bacteria 12128
155 Ga0495671_0000780 3300046692 Bacteria 22874
156 Ga0495660_0002678 3300046810 Bacteria 11273
157 Ga0495660_0013018 3300046810 Bacteria 4822
158 Ga0495660_0130062 3300046810 Bacteria 1264
159 Ga0495660_0168935 3300046810 Unclassified 1066
160 Ga0495604_0223570 3300047317 Bacteria 1295
161 Ga0495680_0141448 3300047322 Bacteria 1760
162 Ga0495683_0000150 3300047323 Bacteria 68562
163 Ga0495673_0018363 3300047469 Bacteria 3528
164 Ga0495602_0009916 3300048088 Bacteria 9879
165 Ga0495602_0148169 3300048088 Bacteria 1848
166 Ga0495602_0149306 3300048088 Bacteria 1839
167 Ga0496100_0151367 3300048903 Bacteria 1655
168 Ga0496101_0012871 3300048904 Bacteria 5596
169 Ga0496103_0097882 3300048906 Bacteria 1855
170 Ga0496104_0006478 3300048907 Bacteria 10292
171 Ga0496105_0004378 3300048908 Bacteria 10632
172 Ga0496106_0493005 3300048909 Bacteria 984
173 Ga0496115_0507241 3300048918 Bacteria 969
174 Ga0496116_0000007 3300048919 Bacteria 795464
175 Ga0496116_0082585 3300048919 Bacteria 1987
176 Ga0496116_0093358 3300048919 Bacteria 1822
177 Ga0496117_0000020 3300048920 Bacteria 458405
178 Ga0496117_0000933 3300048920 Bacteria 44787
179 Ga0496117_0003718 3300048920 Bacteria 17520
180 Ga0496117_0014784 3300048920 Bacteria 6699
181 Ga0496117_0038731 3300048920 Bacteria 3529
182 Ga0496117_0038843 3300048920 Bacteria 3521
183 Ga0496117_0125417 3300048920 Bacteria 1568
184 Ga0496117_0166396 3300048920 Bacteria 1285
185 Ga0496117_0192815 3300048920 Bacteria 1158
186 Ga0496118_0000015 3300048921 Bacteria 551359
187 Ga0496118_0000999 3300048921 Bacteria 44116
188 Ga0496118_0009486 3300048921 Bacteria 9816
189 Ga0496118_0014856 3300048921 Bacteria 7253
190 Ga0496118_0018654 3300048921 Bacteria 6239
191 Ga0496118_0020091 3300048921 Bacteria 5937
192 Ga0496118_0113377 3300048921 Bacteria 1791
193 Ga0496119_0000537 3300048922 Bacteria 51588
194 Ga0496119_0014548 3300048922 Bacteria 6142
195 Ga0496120_0000055 3300048923 Bacteria 180856
196 Ga0496120_0002649 3300048923 Bacteria 17666
197 Ga0496120_0030301 3300048923 Bacteria 3290
198 Ga0496120_0043778 3300048923 Bacteria 2605
199 Ga0496121_0000101 3300048924 Bacteria 195984
200 Ga0496121_0000760 3300048924 Bacteria 59241
201 Ga0496121_0001238 3300048924 Bacteria 44339
202 Ga0496121_0188826 3300048924 Bacteria 1480
203 Ga0496122_0000319 3300048925 Bacteria 105543
204 Ga0496122_0005531 3300048925 Bacteria 15007
205 Ga0496123_0000117 3300048926 Bacteria 161679
206 Ga0496123_0008787 3300048926 Bacteria 9210
207 Ga0496124_0000283 3300048927 Bacteria 96433
208 Ga0496124_0004785 3300048927 Bacteria 15586
209 Ga0496124_0029385 3300048927 Bacteria 4899
210 Ga0496124_0054415 3300048927 Bacteria 3387
211 Ga0496124_0060667 3300048927 Bacteria 3172
212 Ga0496125_0000975 3300048928 Bacteria 44797
213 Ga0496125_0018648 3300048928 Bacteria 6584
214 Ga0496125_0021345 3300048928 Bacteria 6043
215 Ga0496126_0000073 3300048929 Bacteria 236027
216 Ga0496126_0000896 3300048929 Bacteria 51766
217 Ga0496126_0003552 3300048929 Bacteria 19608
218 Ga0496126_0138265 3300048929 Bacteria 2099
219 Ga0496126_0163103 3300048929 Bacteria 1903
220 Ga0501249_004163 3300049679 Bacteria 2929
221 Ga0501269_000132 3300049766 Bacteria 23425
222 Ga0500569_052282 3300053109 Bacteria 1236
223 Ga0500607_041840 3300053121 Bacteria 2476
224 Ga0500618_000230 3300053125 Bacteria 44012
225 Ga0466962_0003920 3300061719 Bacteria 7119

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046664 Ga0495659_0152053 Ga0495659_0152053_19_777 252
2 3300048918 Ga0496115_0507241 Ga0496115_0507241_164_955 261
3 3300044684 Ga0466966_0005177 Ga0466966_0005177_3006_3905 275
4 3300044693 Ga0466961_0067998 Ga0466961_0067998_942_1841 275
5 3300044706 Ga0466964_0010110 Ga0466964_0010110_165_1064 275
6 3300044719 Ga0466971_0000728 Ga0466971_0000728_11102_12001 275
7 3300044735 Ga0466968_0074559 Ga0466968_0074559_520_1419 275
8 3300044765 Ga0466970_0012598 Ga0466970_0012598_549_1448 275
9 3300044842 Ga0466957_0036710 Ga0466957_0036710_1760_2659 275
10 3300045049 Ga0466959_0049121 Ga0466959_0049121_715_1614 275
11 iso_pu_bacteria 2582581306 2585270235 285
12 iso_pu_bacteria 2582581866 2585395815 285
13 3300009036 Ga0105244_10136212 Ga0105244_101362121 289
14 3300009093 Ga0105240_10000985 Ga0105240_1000098522 290
15 3300009174 Ga0105241_10414578 Ga0105241_104145781 290
16 3300010375 Ga0105239_10000080 Ga0105239_10000080102 290
17 3300025913 Ga0207695_10000529 Ga0207695_1000052925 290
18 3300048906 Ga0496103_0097882 Ga0496103_0097882_509_1381 290
19 3300048907 Ga0496104_0006478 Ga0496104_0006478_4737_5609 290
20 3300048908 Ga0496105_0004378 Ga0496105_0004378_4458_5330 290
21 3300048909 Ga0496106_0493005 Ga0496106_0493005_42_914 290
22 3300048920 Ga0496117_0038731 Ga0496117_0038731_1273_2145 290
23 3300048921 Ga0496118_0020091 Ga0496118_0020091_3793_4665 290
24 3300048922 Ga0496119_0000537 Ga0496119_0000537_27494_28366 290
25 3300048923 Ga0496120_0000055 Ga0496120_0000055_27952_28824 290
26 3300048924 Ga0496121_0000101 Ga0496121_0000101_176324_177196 290
27 3300061719 Ga0466962_0003920 Ga0466962_0003920_758_1657 290
28 3300009093 Ga0105240_10001505 Ga0105240_1000150523 291
29 3300025913 Ga0207695_10001440 Ga0207695_1000144016 291
30 3300028794 Ga0307515_10003918 Ga0307515_1000391824 291
31 3300053109 Ga0500569_052282 Ga0500569_052282_186_1067 291
32 iso_pu_bacteria 2896384573 2896389827 292
33 3300039447 Ga0436361_0584902 Ga0436361_0584902_1113_1994 293
34 3300039447 Ga0436361_0773716 Ga0436361_0773716_225_1106 293
35 3300048927 Ga0496124_0004785 Ga0496124_0004785_2235_3140 293
36 iso_pu_bacteria 2510917022 2511137256 293
37 iso_pu_bacteria 2582581283 2585169042 293
38 iso_pu_bacteria 2582581307 2585274083 293
39 iso_pu_bacteria 2585427531 2585560533 293
40 iso_pu_bacteria 2585427609 2585903684 293
41 iso_pu_bacteria 2585428125 2587981197 293
42 iso_pu_bacteria 2643221607 2644051218 293
43 iso_pu_bacteria 2643221636 2644200889 293
44 iso_pu_bacteria 2643221686 2644484122 293
45 iso_pu_bacteria 2718217927 2719386917 293
46 iso_pu_bacteria 2718218423 2721400640 293
47 iso_pu_bacteria 2721755809 2724039453 293
48 iso_pu_bacteria 2821443989 2821448455 293
49 iso_pu_bacteria 2842395702 2842400502 293
50 iso_pu_bacteria 8005275841 8005281731 293
51 iso_pu_bacteria 8005556819 8005561713 293
52 iso_pu_bacteria 8005563573 8005568492 293
53 iso_pu_bacteria 8005695170 8005696716 293
54 iso_pu_bacteria 8018163183 8018163266 293
55 3300005288 Ga0065714_10013183 Ga0065714_100131832 294
56 3300005331 Ga0070670_100000048 Ga0070670_1000000486 294
57 3300021361 Ga0213872_10049612 Ga0213872_100496122 294
58 3300039447 Ga0436361_0654596 Ga0436361_0654596_730_1614 294
59 3300046492 Ga0495585_0000469 Ga0495585_0000469_17133_18038 294
60 3300046512 Ga0495610_0014231 Ga0495610_0014231_1432_2316 294
61 3300046530 Ga0495654_0004977 Ga0495654_0004977_1098_1982 294
62 3300046538 Ga0495609_0013245 Ga0495609_0013245_756_1640 294
63 3300046558 Ga0495633_0000009 Ga0495633_0000009_44907_45791 294
64 3300046692 Ga0495671_0000780 Ga0495671_0000780_20771_21676 294
65 3300046810 Ga0495660_0013018 Ga0495660_0013018_1708_2592 294
66 3300047323 Ga0495683_0000150 Ga0495683_0000150_44831_45715 294
67 3300047469 Ga0495673_0018363 Ga0495673_0018363_2212_3096 294
68 3300017792 Ga0163161_10096873 Ga0163161_100968733 295
69 3300025925 Ga0207650_10000187 Ga0207650_1000018759 295
70 3300046501 Ga0495607_0005082 Ga0495607_0005082_2359_3264 295
71 3300048920 Ga0496117_0000933 Ga0496117_0000933_1299_2204 295
72 3300048921 Ga0496118_0000999 Ga0496118_0000999_628_1533 295
73 3300048924 Ga0496121_0001238 Ga0496121_0001238_794_1699 295
74 3300048928 Ga0496125_0000975 Ga0496125_0000975_42641_43546 295
75 iso_pu_bacteria 2738541276 2738714203 295
76 3300006178 Ga0075367_10005561 Ga0075367_100055615 296
77 3300046518 Ga0495631_0001579 Ga0495631_0001579_1775_2680 296
78 3300048903 Ga0496100_0151367 Ga0496100_0151367_57_947 296
79 3300048904 Ga0496101_0012871 Ga0496101_0012871_4565_5455 296
80 3300048920 Ga0496117_0038843 Ga0496117_0038843_683_1573 296
81 3300048921 Ga0496118_0018654 Ga0496118_0018654_200_1090 296
82 3300048924 Ga0496121_0188826 Ga0496121_0188826_485_1375 296
83 3300048929 Ga0496126_0000896 Ga0496126_0000896_22996_23886 296
84 3300003320 rootH2_10052331 rootH2_100523317 297
85 3300006048 Ga0075363_100051342 Ga0075363_1000513421 297
86 3300006178 Ga0075367_10070946 Ga0075367_100709462 297
87 3300021361 Ga0213872_10002152 Ga0213872_100021526 297
88 3300021361 Ga0213872_10017967 Ga0213872_100179674 297
89 3300028794 Ga0307515_10178186 Ga0307515_101781862 297
90 3300039447 Ga0436361_0191986 Ga0436361_0191986_1714_2640 297
91 3300039447 Ga0436361_0848090 Ga0436361_0848090_31628_32521 297
92 3300046512 Ga0495610_0084628 Ga0495610_0084628_421_1341 297
93 3300046522 Ga0495643_0014455 Ga0495643_0014455_408_1328 297
94 3300046660 Ga0495625_0069862 Ga0495625_0069862_1248_2147 297
95 3300046810 Ga0495660_0130062 Ga0495660_0130062_135_1055 297
96 iso_pu_bacteria 2506520007 2506579326 297
97 iso_pu_bacteria 2506520008 2506584465 297
98 iso_pu_bacteria 2508501125 2509130567 297
99 iso_pu_bacteria 2519103095 2519463187 297
100 iso_pu_bacteria 2582581311 2585293533 297
101 iso_pu_bacteria 2582581865 2585390457 297
102 iso_pu_bacteria 2599185239 2599739004 297
103 iso_pu_bacteria 2599185240 2599745985 297
104 iso_pu_bacteria 2599185355 2600207756 297
105 iso_pu_bacteria 2643221689 2644497929 297
106 iso_pu_bacteria 2654587920 2656276497 297
107 iso_pu_bacteria 2667528172 2671103026 297
108 iso_pu_bacteria 2675903129 2676744069 297
109 iso_pu_bacteria 2681812869 2682005331 297
110 iso_pu_bacteria 2721755763 2723878289 297
111 iso_pu_bacteria 2765235842 2765588902 297
112 iso_pu_bacteria 2816332253 2817263432 297
113 iso_pu_bacteria 2816332256 2817276808 297
114 iso_pu_bacteria 2816332286 2817452921 297
115 iso_pu_bacteria 2818991452 2819631575 297
116 iso_pu_bacteria 2823373977 2823374694 297
117 iso_pu_bacteria 2826581358 2826582457 297
118 iso_pu_bacteria 2842747753 2842752484 297
119 iso_pu_bacteria 2842849001 2842851707 297
120 iso_pu_bacteria 2863421361 2863426585 297
121 iso_pu_bacteria 2869551831 2869555242 297
122 iso_pu_bacteria 2870068957 2870075681 297
123 iso_pu_bacteria 2904564687 2904566691 297
124 iso_pu_bacteria 2904571731 2904573736 297
125 iso_pu_bacteria 2919476304 2919477387 297
126 iso_pu_bacteria 2928163908 2928167789 297
127 iso_pu_bacteria 2928170801 2928175950 297
128 iso_pu_bacteria 2928536128 2928539429 297
129 iso_pu_bacteria 2939617950 2939619207 297
130 iso_pu_bacteria 2974310843 2974312173 297
131 iso_pu_bacteria 8018405270 8018407857 297
132 iso_pu_bacteria 8018845410 8018847295 297
133 iso_pu_bacteria 8019504834 8019506091 297
134 iso_pu_bacteria 8020807995 8020811199 297
135 iso_pu_bacteria 8020938398 8020940266 297
136 iso_pu_bacteria 8020945358 8020946603 297
137 iso_pu_bacteria 8020953355 8020955355 297
138 iso_pu_bacteria 8021120328 8021125952 297
139 iso_pu_bacteria 8040167225 8040170027 297
140 iso_pu_bacteria 8040173305 8040176636 297
141 3300005353 Ga0070669_100050857 Ga0070669_1000508573 298
142 3300025263 Ga0209565_1002689 Ga0209565_10026893 298
143 3300025294 Ga0209025_1002133 Ga0209025_10021332 298
144 3300025299 Ga0209256_1000287 Ga0209256_100028746 298
145 3300025303 Ga0209051_1007243 Ga0209051_10072431 298
146 3300025923 Ga0207681_10066455 Ga0207681_100664553 298
147 3300033180 Ga0307510_10000293 Ga0307510_1000029312 298
148 3300048925 Ga0496122_0000319 Ga0496122_0000319_66232_67143 298
149 3300048926 Ga0496123_0000117 Ga0496123_0000117_52059_52970 298
150 3300048927 Ga0496124_0054415 Ga0496124_0054415_1695_2615 298
151 3300048929 Ga0496126_0138265 Ga0496126_0138265_158_1078 298
152 3300053121 Ga0500607_041840 Ga0500607_041840_719_1627 298
153 3300053125 Ga0500618_000230 Ga0500618_000230_11837_12751 298
154 3300028794 Ga0307515_10004543 Ga0307515_100045437 299
155 3300015690 Ga0183363_1043 Ga0183363_10435 300
156 2162886007 SwRhRL2b_contig_668471 SwRhRL2b_0828.00004950 301
157 3300001979 JGI24740J21852_10001109 JGI24740J21852_1000110911 301
158 3300003322 rootL2_10290445 rootL2_102904452 301
159 3300003751 Ga0055538_1001918 Ga0055538_10019183 301
160 3300003752 Ga0055539_1000293 Ga0055539_100029315 301
161 3300003756 Ga0055533_1003345 Ga0055533_10033453 301
162 3300003758 Ga0055532_1000237 Ga0055532_100023731 301
163 3300003759 Ga0055525_1000353 Ga0055525_100035315 301
164 3300003760 Ga0055527_1000040 Ga0055527_100004053 301
165 3300003760 Ga0055527_1000085 Ga0055527_10000856 301
166 3300003761 Ga0055535_1000036 Ga0055535_100003698 301
167 3300003761 Ga0055535_1000154 Ga0055535_10001546 301
168 3300003762 Ga0055542_1000061 Ga0055542_100006163 301
169 3300003762 Ga0055542_1003602 Ga0055542_10036023 301
170 3300003763 Ga0055529_1000069 Ga0055529_100006998 301
171 3300003790 Ga0055528_1005982 Ga0055528_10059827 301
172 3300003841 Ga0055541_1002751 Ga0055541_10027513 301
173 3300003856 Ga0058692_1007697 Ga0058692_10076972 301
174 3300005290 Ga0065712_10067846 Ga0065712_100678468 301
175 3300005344 Ga0070661_100000708 Ga0070661_1000007082 301
176 3300005455 Ga0070663_100000336 Ga0070663_1000003362 301
177 3300005548 Ga0070665_100001044 Ga0070665_1000010445 301
178 3300005564 Ga0070664_100000787 Ga0070664_10000078722 301
179 3300005614 Ga0068856_100103318 Ga0068856_1001033182 301
180 3300005616 Ga0068852_100079530 Ga0068852_1000795303 301
181 3300006051 Ga0075364_10012214 Ga0075364_100122143 301
182 3300009011 Ga0105251_10002880 Ga0105251_1000288015 301
183 3300009011 Ga0105251_10007000 Ga0105251_100070005 301
184 3300009036 Ga0105244_10000625 Ga0105244_1000062524 301
185 3300009036 Ga0105244_10006635 Ga0105244_100066354 301
186 3300009092 Ga0105250_10001366 Ga0105250_1000136614 301
187 3300009093 Ga0105240_10000553 Ga0105240_1000055316 301
188 3300009093 Ga0105240_10227410 Ga0105240_102274102 301
189 3300009101 Ga0105247_10000030 Ga0105247_10000030104 301
190 3300009174 Ga0105241_10409632 Ga0105241_104096321 301
191 3300013100 Ga0157373_10001660 Ga0157373_100016608 301
192 3300013102 Ga0157371_10001472 Ga0157371_1000147220 301
193 3300013104 Ga0157370_10000002 Ga0157370_10000002369 301
194 3300013307 Ga0157372_10001617 Ga0157372_1000161721 301
195 3300015261 Ga0182006_1005358 Ga0182006_10053582 301
196 3300015262 Ga0182007_10000975 Ga0182007_1000097510 301
197 3300017792 Ga0163161_10000031 Ga0163161_1000003141 301
198 3300025224 Ga0209784_100024 Ga0209784_100024346 301
199 3300025225 Ga0209566_100018 Ga0209566_100018346 301
200 3300025225 Ga0209566_100274 Ga0209566_10027417 301
201 3300025226 Ga0209674_100046 Ga0209674_10004617 301
202 3300025226 Ga0209674_105569 Ga0209674_1055692 301
203 3300025228 Ga0209672_100035 Ga0209672_100035178 301
204 3300025228 Ga0209672_100040 Ga0209672_100040219 301
205 3300025229 Ga0209147_100037 Ga0209147_10003792 301
206 3300025229 Ga0209147_100041 Ga0209147_100041178 301
207 3300025229 Ga0209147_100048 Ga0209147_100048219 301
208 3300025230 Ga0209563_100039 Ga0209563_10003917 301
209 3300025242 Ga0209258_100063 Ga0209258_100063180 301
210 3300025242 Ga0209258_100070 Ga0209258_100070219 301
211 3300025253 Ga0209677_100024 Ga0209677_10002415 301
212 3300025254 Ga0209148_1000088 Ga0209148_1000088178 301
213 3300025254 Ga0209148_1000311 Ga0209148_100031157 301
214 3300025256 Ga0209759_1004089 Ga0209759_10040893 301
215 3300025256 Ga0209759_1004321 Ga0209759_10043213 301
216 3300025258 Ga0209129_1000018 Ga0209129_1000018369 301
217 3300025272 Ga0209455_1000075 Ga0209455_100007588 301
218 3300025272 Ga0209455_1000351 Ga0209455_100035136 301
219 3300025273 Ga0209673_1000061 Ga0209673_1000061183 301
220 3300025711 Ga0207696_1000001 Ga0207696_10000012102 301
221 3300025728 Ga0207655_1018746 Ga0207655_10187461 301
222 3300025735 Ga0207713_1000022 Ga0207713_1000022190 301
223 3300025735 Ga0207713_1010661 Ga0207713_10106613 301
224 3300025900 Ga0207710_10000068 Ga0207710_10000068105 301
225 3300025913 Ga0207695_10000912 Ga0207695_1000091229 301
226 3300025913 Ga0207695_10067793 Ga0207695_100677931 301
227 3300025920 Ga0207649_10000075 Ga0207649_1000007554 301
228 3300025945 Ga0207679_10000267 Ga0207679_1000026720 301
229 3300026067 Ga0207678_10001137 Ga0207678_100011372 301
230 3300026078 Ga0207702_10001353 Ga0207702_1000135321 301
231 3300026142 Ga0207698_10227449 Ga0207698_102274492 301
232 3300027312 Ga0209371_1000041 Ga0209371_100004154 301
233 3300027312 Ga0209371_1000226 Ga0209371_100022668 301
234 3300027312 Ga0209371_1001693 Ga0209371_10016937 301
235 3300028379 Ga0268266_10015039 Ga0268266_100150395 301
236 3300030500 Ga0268256_1000003 Ga0268256_1000003878 301
237 3300030500 Ga0268256_1000006 Ga0268256_1000006826 301
238 3300030500 Ga0268256_1000187 Ga0268256_100018768 301
239 3300030744 Ga0316181_1030846 Ga0316181_10308463 301
240 3300042010 Ga0439452_000008 Ga0439452_000008_145858_146763 301
241 3300042010 Ga0439452_000014 Ga0439452_000014_37733_38638 301
242 3300046453 Ga0495627_000019 Ga0495627_000019_275451_276359 301
243 3300046462 Ga0495651_0008039 Ga0495651_0008039_1411_2316 301
244 3300046471 Ga0495650_0000005 Ga0495650_0000005_517641_518546 301
245 3300046471 Ga0495650_0007489 Ga0495650_0007489_304_1287 301
246 3300046474 Ga0495605_0000749 Ga0495605_0000749_16780_17694 301
247 3300046507 Ga0495606_0003191 Ga0495606_0003191_10490_11404 301
248 3300046516 Ga0495628_0050360 Ga0495628_0050360_2358_3263 301
249 3300046517 Ga0495630_0007414 Ga0495630_0007414_5063_5968 301
250 3300046519 Ga0495632_0076066 Ga0495632_0076066_390_1295 301
251 3300046526 Ga0495666_0010999 Ga0495666_0010999_3456_4361 301
252 3300046529 Ga0495652_0032991 Ga0495652_0032991_194_1099 301
253 3300046538 Ga0495609_0006833 Ga0495609_0006833_204_1112 301
254 3300046642 Ga0495634_0164547 Ga0495634_0164547_89_994 301
255 3300046678 Ga0495599_0022569 Ga0495599_0022569_1820_2725 301
256 3300046690 Ga0495624_0003245 Ga0495624_0003245_8667_9572 301
257 3300046810 Ga0495660_0002678 Ga0495660_0002678_9938_10846 301
258 3300046810 Ga0495660_0168935 Ga0495660_0168935_91_1026 301
259 3300047317 Ga0495604_0223570 Ga0495604_0223570_353_1258 301
260 3300047322 Ga0495680_0141448 Ga0495680_0141448_82_987 301
261 3300048088 Ga0495602_0009916 Ga0495602_0009916_608_1513 301
262 3300048088 Ga0495602_0148169 Ga0495602_0148169_735_1814 301
263 3300048088 Ga0495602_0149306 Ga0495602_0149306_419_1324 301
264 3300048919 Ga0496116_0000007 Ga0496116_0000007_31746_32654 301
265 3300048919 Ga0496116_0082585 Ga0496116_0082585_599_1546 301
266 3300048919 Ga0496116_0093358 Ga0496116_0093358_537_1445 301
267 3300048920 Ga0496117_0000020 Ga0496117_0000020_291232_292137 301
268 3300048920 Ga0496117_0003718 Ga0496117_0003718_16329_17237 301
269 3300048920 Ga0496117_0014784 Ga0496117_0014784_5726_6631 301
270 3300048920 Ga0496117_0125417 Ga0496117_0125417_345_1250 301
271 3300048920 Ga0496117_0166396 Ga0496117_0166396_79_984 301
272 3300048920 Ga0496117_0192815 Ga0496117_0192815_185_1090 301
273 3300048921 Ga0496118_0000015 Ga0496118_0000015_306447_307352 301
274 3300048921 Ga0496118_0009486 Ga0496118_0009486_1863_2771 301
275 3300048921 Ga0496118_0014856 Ga0496118_0014856_4322_5269 301
276 3300048921 Ga0496118_0113377 Ga0496118_0113377_298_1206 301
277 3300048922 Ga0496119_0014548 Ga0496119_0014548_2168_3073 301
278 3300048923 Ga0496120_0002649 Ga0496120_0002649_12075_12980 301
279 3300048923 Ga0496120_0030301 Ga0496120_0030301_1724_2629 301
280 3300048923 Ga0496120_0043778 Ga0496120_0043778_870_1775 301
281 3300048924 Ga0496121_0000760 Ga0496121_0000760_9991_10896 301
282 3300048925 Ga0496122_0005531 Ga0496122_0005531_7976_8881 301
283 3300048926 Ga0496123_0008787 Ga0496123_0008787_2179_3084 301
284 3300048927 Ga0496124_0000283 Ga0496124_0000283_79194_80099 301
285 3300048927 Ga0496124_0029385 Ga0496124_0029385_3156_4061 301
286 3300048927 Ga0496124_0060667 Ga0496124_0060667_1347_2255 301
287 3300048928 Ga0496125_0018648 Ga0496125_0018648_4606_5511 301
288 3300048928 Ga0496125_0021345 Ga0496125_0021345_4729_5634 301
289 3300048929 Ga0496126_0000073 Ga0496126_0000073_59450_60355 301
290 3300048929 Ga0496126_0003552 Ga0496126_0003552_13236_14141 301
291 3300048929 Ga0496126_0163103 Ga0496126_0163103_314_1219 301
292 3300049679 Ga0501249_004163 Ga0501249_004163_120_1034 301
293 3300049766 Ga0501269_000132 Ga0501269_000132_2410_3324 301

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

62

121

0.98

PF03466

LysR_substrate

LysR substrate binding domain

145

355

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ihs-assembly1.cif.gz_A crystal structure of benm_dbd/catb site 1 dna complex 0.9753 4 82
5xxp-assembly1.cif.gz_B crystal structure of cbnr_dbd-dna complex 0.9667 4 82
4ihs-assembly1.cif.gz_B crystal structure of benm_dbd/catb site 1 dna complex 0.9633 4 82
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.9596 4 82
4iht-assembly1.cif.gz_A crystal structure of benm_dbd/bena site 1 dna complex 0.9585 4 82
ID Description Score Start End Superfamily
af_P0ACR7_1_84_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9869 5 82 1.10.10.10
af_Q2FVT4_1_85_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.983 4 82 1.10.10.10
af_P77744_4_93_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9804 4 82 1.10.10.10
af_Q47141_1_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9779 4 84 1.10.10.10
af_P23841_7_96_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9769 4 82 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A242M2C6-F1-model_v4 Putative transcription regulator protein of MDR efflux pump cluster 0.9371 164 268 GO:0003700
GO:0006351
GO:0043565
AF-A0A351P061-F1-model_v4 LysR family transcriptional regulator 0.9116 118 294 GO:0003700
GO:0006351
GO:0043565
AF-A0A242M2C6-F1-model_v4 Putative transcription regulator protein of MDR efflux pump cluster 0.9116 164 268 GO:0003700
GO:0006351
GO:0043565
AF-A0A4Q5XXI8-F1-model_v4 deleted 0.9004 107 296
AF-A0A4D4IQK1-F1-model_v4 deleted 0.8998 1 294

Feature Viewer

pLDDT pTM Quality
89.33 0.7 High
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Predicted Structure (AlphaFold2)

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