F391538

General Info

Members Datasets Scaffolds Average Seq Length
293 205 584 563

Family's Representative Sequence

Representative Sequence 3300025928|Ga0207700_10060650|Ga0207700_100606502
Length 619
Sequence VSDTVGAEGAAAQLGRRPHGTVPLERRVTVAERLGDEVSRVLPQLRIDELLDELQVRLASVRSSRDRVSQLLDAVVGIGSGLDLEQALGRIVQAAVSLVDARYGALGVIGGDQRLARFITVGLSDDRIAAIGPYPEGHGLLGELIRRPVPLRTDDLSTHPRSYGFPEHHPPMHSFLGVPIRVRDEVFGNLYLTEKQGGAPFDADDEAVLVALAAAAGVAIDNARLYDEARRRQEWLETTAELTRGLLGGADVDDVLAAFAQRVRGFAGADLAVVALPESQDGDLLVIAADGEGADRLRGAVIELDDTLCGGVFKSGQREWVADVSRDERSDRGRFEGAGSMLVLPMGAAGAVHGVLALARATGGTPFDAGMVDLAADLGMQAAVVLEPAERRTDGGLLSLYADRDRIVRDLHDLAIQRLFATSMSLQGAYKITQKPAVARRIAQAIEDLDDTVKVIRSTIFALHAHDLDQDDAPSVRAQVMEECERAARSLGFTPAVRFTGPVDVLVAEEIATHLLPVLRETLSNAARHAHATRVDVDLAASDSRTVLTVADDGVGIPAGGRRSGLENLRERAEQQGGSFTTVPGPAGGTVATWSVPTRPHESGDPDETSGDLGRVESP

Samples

Sample ID Description Type Environment
1 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
3 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
4 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
7 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
11 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
12 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
13 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
14 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
15 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
16 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
17 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
24 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
25 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
26 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
27 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
28 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
29 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
41 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
42 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
43 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
44 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
45 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
46 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
47 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
48 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
49 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
50 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
51 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
52 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
53 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
54 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
55 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
56 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
57 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
58 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
59 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
60 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
61 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
62 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
63 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
64 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
65 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
66 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
67 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
68 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
69 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
70 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
71 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
72 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
73 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
74 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
75 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
76 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
77 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
78 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
79 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
80 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
81 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
82 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
83 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
84 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
85 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
86 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
87 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
88 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
89 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
90 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
91 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
92 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
93 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
94 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
95 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
96 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
97 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
98 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
99 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
100 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
101 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
102 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
103 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
104 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
105 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
106 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
107 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
108 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
109 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
110 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
111 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
112 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
113 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
114 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
115 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
116 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
117 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
118 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
119 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
120 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
121 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
122 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
123 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
128 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
130 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
131 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
132 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
133 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
134 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
135 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
136 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
137 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
138 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
139 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
140 3300053732 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 endosphere Metagenome Endosphere
141 2501939600 Micromonospora sp. L5 Isolate Unclassified
142 2506783011 Frankia datiscae Dg1 Isolate Nodule
143 2547132424 Nocardia nova SH22a Isolate Unclassified
144 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
145 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
146 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
147 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
148 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
149 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
150 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
151 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
152 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
153 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
154 2773857933 Frankia sp. BMG5.30 Isolate Nodule
155 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
156 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
157 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
158 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
159 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
160 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
161 2855683550 Micromonospora sp. RP3T Isolate Unclassified
162 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
163 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
164 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
165 2858868258 Micromonospora sp. MH33 Isolate Unclassified
166 2858882152 Micromonospora noduli MED15 Isolate Nodule
167 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
168 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
169 2862574272 Streptomyces sp. AcE210 Isolate Nodule
170 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
171 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
172 2867475112 Streptomyces sp. TM32 Isolate Unclassified
173 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
174 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
175 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
176 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
177 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
178 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
179 2902582711 Micromonospora sp. AP08 Isolate Unclassified
180 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
181 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
182 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
183 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
184 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
185 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
186 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
187 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
188 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
189 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
190 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
191 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
192 649633069 Micromonospora sp. L5 Isolate Unclassified
193 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
194 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
195 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
196 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified
197 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
198 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
199 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
200 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
201 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
202 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
203 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere
204 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
205 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 76.45
Metatranscriptomes 0
Isolates 23.55

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.1
Nodule 2.39
Rhizoplane 4.44
Rhizosphere 67.92
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207700_10060650 3300025928 Bacteria 2866
2 Ga0068868_100157513 3300005338 Bacteria 1873
3 Ga0070668_100002413 3300005347 Bacteria 13759
4 Ga0070668_100008584 3300005347 Bacteria 7588
5 Ga0070709_10001265 3300005434 Bacteria 13838
6 Ga0070714_100023998 3300005435 Bacteria 5016
7 Ga0070713_100050923 3300005436 Bacteria 3423
8 Ga0070685_10065246 3300005466 Bacteria 2142
9 Ga0070706_100059600 3300005467 Bacteria 3524
10 Ga0070707_100009571 3300005468 Bacteria 9003
11 Ga0070707_100045512 3300005468 Bacteria 4200
12 Ga0070707_100071306 3300005468 Bacteria 3347
13 Ga0068853_100006285 3300005539 Bacteria 9418
14 Ga0068858_100015420 3300005842 Bacteria 7186
15 Ga0068862_100034214 3300005844 Bacteria 4298
16 Ga0081539_10009221 3300005985 Bacteria 8310
17 Ga0081539_10010580 3300005985 Bacteria 7461
18 Ga0070717_10022805 3300006028 Bacteria 4952
19 Ga0070715_10000255 3300006163 Bacteria 12867
20 Ga0070716_100005653 3300006173 Bacteria 6072
21 Ga0070712_100114588 3300006175 Bacteria 2018
22 Ga0075428_100010626 3300006844 Bacteria 10233
23 Ga0075430_100079108 3300006846 Bacteria 2756
24 Ga0075431_100035092 3300006847 Bacteria 5166
25 Ga0075429_100092542 3300006880 Bacteria 2637
26 Ga0114129_10000165 3300009147 Bacteria 71710
27 Ga0114129_10096388 3300009147 Bacteria 4095
28 Ga0114129_10195984 3300009147 Bacteria 2739
29 Ga0105243_10071720 3300009148 Bacteria 2801
30 Ga0157369_10128897 3300013105 Bacteria 2681
31 Ga0157375_10157307 3300013308 Bacteria 2412
32 Ga0213875_10003897 3300021388 Bacteria 8348
33 Ga0209758_1003197 3300025297 Bacteria 15291
34 Ga0207426_1001036 3300025302 Bacteria 26485
35 Ga0207426_1002124 3300025302 Bacteria 13572
36 Ga0207426_1004290 3300025302 Bacteria 7051
37 Ga0207692_10004411 3300025898 Bacteria 5569
38 Ga0207685_10004862 3300025905 Bacteria 3474
39 Ga0207699_10000640 3300025906 Bacteria 16963
40 Ga0207663_10001861 3300025916 Bacteria 9981
41 Ga0207646_10142485 3300025922 Bacteria 2159
42 Ga0207700_10002281 3300025928 Bacteria 11009
43 Ga0207664_10000771 3300025929 Bacteria 21685
44 Ga0207665_10001933 3300025939 Bacteria 13938
45 Ga0207668_10001176 3300025972 Bacteria 15535
46 Ga0207668_10019156 3300025972 Bacteria 4321
47 Ga0207678_10091087 3300026067 Bacteria 2606
48 Ga0207641_10171812 3300026088 Bacteria 1979
49 Ga0268265_10023482 3300028380 Bacteria 4347
50 Ga0307517_10004413 3300028786 Bacteria 21605
51 Ga0307515_10000741 3300028794 Bacteria 75546
52 Ga0307515_10010344 3300028794 Bacteria 17885
53 Ga0307512_10007301 3300030522 Bacteria 10981
54 Ga0307512_10011660 3300030522 Bacteria 8316
55 Ga0307512_10061707 3300030522 Bacteria 2884
56 Ga0307512_10064518 3300030522 Bacteria 2789
57 Ga0307513_10003800 3300031456 Bacteria 20348
58 Ga0307513_10004876 3300031456 Bacteria 17809
59 Ga0307509_10023396 3300031507 Bacteria 6940
60 Ga0307509_10042307 3300031507 Bacteria 4938
61 Ga0307408_100017567 3300031548 Bacteria 4789
62 Ga0307508_10007230 3300031616 Bacteria 10339
63 Ga0307508_10008822 3300031616 Bacteria 9302
64 Ga0307508_10062952 3300031616 Bacteria 3273
65 Ga0307514_10011281 3300031649 Bacteria 7430
66 Ga0307516_10069595 3300031730 Bacteria 3384
67 Ga0307413_10000251 3300031824 Bacteria 16164
68 Ga0307413_10009263 3300031824 Bacteria 4704
69 Ga0307410_10025289 3300031852 Bacteria 3723
70 Ga0307406_10006719 3300031901 Bacteria 6361
71 Ga0307409_100012468 3300031995 Bacteria 5418
72 Ga0307409_100083581 3300031995 Bacteria 2589
73 Ga0307416_100021966 3300032002 Bacteria 4595
74 Ga0307414_10137417 3300032004 Bacteria 1908
75 Ga0307507_10000005 3300033179 Bacteria 281494
76 Ga0307507_10000920 3300033179 Bacteria 65498
77 Ga0307507_10001371 3300033179 Bacteria 54614
78 Ga0307510_10092742 3300033180 Bacteria 2855
79 Ga0373926_0001872 3300035083 Bacteria 6559
80 Ga0373942_0000136 3300035207 Bacteria 17474
81 Ga0373962_0011023 3300035242 Bacteria 2261
82 Ga0373935_0000083 3300035692 Bacteria 41413
83 Ga0373947_0000013 3300035725 Bacteria 145159
84 Ga0395899_0008290 3300037312 Bacteria 8003
85 Ga0395900_0031624 3300037418 Bacteria 5440
86 Ga0436364_0397767 3300037853 Bacteria 14268
87 Ga0466969_0024254 3300044656 Bacteria 3120
88 Ga0466972_0004050 3300044658 Bacteria 7310
89 Ga0466972_0009567 3300044658 Bacteria 4866
90 Ga0466965_0003020 3300044683 Bacteria 7312
91 Ga0466966_0006329 3300044684 Bacteria 7829
92 Ga0466961_0019406 3300044693 Bacteria 4372
93 Ga0495617_014520 3300046452 Bacteria 2677
94 Ga0495592_0048136 3300046454 Bacteria 3172
95 Ga0495592_0056347 3300046454 Bacteria 2905
96 Ga0495603_0000591 3300046455 Bacteria 20377
97 Ga0495603_0001735 3300046455 Bacteria 12847
98 Ga0495603_0001975 3300046455 Bacteria 12095
99 Ga0495603_0004054 3300046455 Bacteria 8718
100 Ga0495603_0004353 3300046455 Bacteria 8447
101 Ga0495603_0005821 3300046455 Bacteria 7373
102 Ga0495603_0009170 3300046455 Bacteria 5978
103 Ga0495629_0000767 3300046459 Bacteria 25905
104 Ga0495629_0002185 3300046459 Bacteria 15099
105 Ga0495629_0040974 3300046459 Bacteria 3259
106 Ga0495629_0062846 3300046459 Bacteria 2593
107 Ga0495651_0085940 3300046462 Bacteria 2368
108 Ga0495662_0000374 3300046476 Bacteria 19769
109 Ga0495664_0001217 3300046477 Bacteria 13459
110 Ga0495585_0035826 3300046492 Bacteria 2802
111 Ga0495585_0039744 3300046492 Bacteria 2644
112 Ga0495594_0003827 3300046499 Bacteria 7728
113 Ga0495594_0006143 3300046499 Bacteria 6178
114 Ga0495594_0014925 3300046499 Bacteria 4077
115 Ga0495583_0019288 3300046506 Bacteria 3563
116 Ga0495606_0001079 3300046507 Bacteria 39224
117 Ga0495606_0026521 3300046507 Bacteria 4129
118 Ga0495618_0052341 3300046514 Bacteria 2580
119 Ga0495620_0010450 3300046515 Bacteria 4898
120 Ga0495628_0034899 3300046516 Bacteria 4043
121 Ga0495628_0080606 3300046516 Bacteria 2529
122 Ga0495628_0158967 3300046516 Bacteria 1718
123 Ga0495643_0006537 3300046522 Bacteria 7669
124 Ga0495643_0009433 3300046522 Bacteria 6067
125 Ga0495666_0013588 3300046526 Bacteria 4059
126 Ga0495666_0022437 3300046526 Bacteria 3126
127 Ga0495666_0023772 3300046526 Bacteria 3031
128 Ga0495652_0008112 3300046529 Bacteria 9610
129 Ga0495652_0130313 3300046529 Bacteria 1992
130 Ga0495652_0142301 3300046529 Bacteria 1885
131 Ga0495640_0005317 3300046533 Bacteria 10232
132 Ga0495622_0003686 3300046557 Bacteria 7178
133 Ga0495622_0008075 3300046557 Bacteria 4880
134 Ga0495622_0014786 3300046557 Bacteria 3627
135 Ga0495667_0007350 3300046559 Bacteria 7468
136 Ga0495668_0000157 3300046616 Bacteria 103626
137 Ga0495668_0021841 3300046616 Bacteria 3664
138 Ga0495634_0043182 3300046642 Bacteria 3055
139 Ga0495611_0014249 3300046648 Bacteria 3393
140 Ga0495611_0024987 3300046648 Bacteria 2600
141 Ga0495625_0000581 3300046660 Bacteria 53096
142 Ga0495625_0022927 3300046660 Bacteria 4776
143 Ga0495625_0057754 3300046660 Bacteria 2758
144 Ga0495635_0007435 3300046663 Bacteria 7646
145 Ga0495588_0006589 3300046674 Bacteria 5240
146 Ga0495588_0060705 3300046674 Bacteria 1957
147 Ga0495657_0006045 3300046675 Bacteria 9505
148 Ga0495657_0021843 3300046675 Bacteria 4591
149 Ga0495657_0037211 3300046675 Bacteria 3356
150 Ga0495623_0098852 3300046679 Bacteria 1780
151 Ga0495658_0013674 3300046683 Bacteria 4135
152 Ga0495613_0002860 3300046689 Bacteria 12925
153 Ga0495613_0006625 3300046689 Bacteria 8652
154 Ga0495613_0007182 3300046689 Bacteria 8296
155 Ga0495613_0008094 3300046689 Bacteria 7816
156 Ga0495613_0012349 3300046689 Bacteria 6346
157 Ga0495613_0053093 3300046689 Bacteria 2983
158 Ga0495613_0053542 3300046689 Bacteria 2969
159 Ga0495613_0135425 3300046689 Bacteria 1763
160 Ga0495624_0027795 3300046690 Bacteria 3700
161 Ga0495624_0051588 3300046690 Bacteria 2602
162 Ga0495670_0013936 3300046691 Bacteria 3955
163 Ga0495589_0005283 3300046794 Bacteria 6827
164 Ga0495589_0014371 3300046794 Bacteria 4078
165 Ga0495600_0008447 3300046809 Bacteria 6326
166 Ga0495600_0012674 3300046809 Bacteria 5277
167 Ga0495600_0058894 3300046809 Bacteria 2509
168 Ga0495604_0007378 3300047317 Bacteria 8712
169 Ga0495604_0023222 3300047317 Bacteria 4948
170 Ga0495604_0057512 3300047317 Bacteria 2989
171 Ga0495674_0010298 3300047319 Bacteria 8851
172 Ga0495674_0088879 3300047319 Bacteria 2641
173 Ga0495676_0002748 3300047321 Bacteria 15785
174 Ga0495676_0004479 3300047321 Bacteria 12770
175 Ga0495676_0005945 3300047321 Bacteria 11201
176 Ga0495676_0011064 3300047321 Bacteria 8156
177 Ga0495676_0011426 3300047321 Bacteria 8015
178 Ga0495676_0042046 3300047321 Bacteria 3755
179 Ga0495680_0058315 3300047322 Bacteria 2984
180 Ga0495683_0040248 3300047323 Bacteria 2361
181 Ga0495687_003909 3300047443 Bacteria 10445
182 Ga0495687_030446 3300047443 Bacteria 2484
183 Ga0495675_0023622 3300047444 Bacteria 3918
184 Ga0495685_001542 3300047447 Bacteria 7069
185 Ga0495685_001882 3300047447 Bacteria 6485
186 Ga0495593_0020144 3300047673 Bacteria 3735
187 Ga0495614_0000781 3300048089 Bacteria 13488
188 Ga0495626_0000582 3300048091 Bacteria 36171
189 Ga0495626_0031187 3300048091 Bacteria 2567
190 Ga0496101_0015110 3300048904 Bacteria 5196
191 Ga0496102_0296437 3300048905 Bacteria 1524
192 Ga0496104_0005898 3300048907 Bacteria 10729
193 Ga0496108_0000468 3300048911 Bacteria 32327
194 Ga0496108_0023008 3300048911 Bacteria 5127
195 Ga0496108_0069271 3300048911 Bacteria 2977
196 Ga0496108_0077293 3300048911 Bacteria 2815
197 Ga0496109_0021509 3300048912 Bacteria 5704
198 Ga0496112_0109660 3300048915 Bacteria 2730
199 Ga0496114_0010830 3300048917 Bacteria 7261
200 Ga0496114_0041100 3300048917 Bacteria 3832
201 Ga0496115_0016211 3300048918 Bacteria 5670
202 Ga0501032_0012744 3300049569 Bacteria 5995
203 Ga0501033_0078510 3300049570 Bacteria 2422
204 Ga0501036_0064716 3300049572 Bacteria 3095
205 Ga0501047_0003403 3300049581 Bacteria 15062
206 Ga0501073_0041914 3300049589 Bacteria 3233
207 Ga0501035_0028550 3300049822 Bacteria 5092
208 Ga0501044_0050802 3300049823 Bacteria 4277
209 Ga0501044_0141006 3300049823 Bacteria 2399
210 nmdc:mga05p37_2145_c1 3300050507 Bacteria 23036
211 nmdc:mga05p37_82431_c1 3300050507 Bacteria 3963
212 nmdc:mga09592_67895_c1 3300050508 Bacteria 3024
213 nmdc:mga06r32_263670_c1 3300050510 Bacteria 1710
214 Ga0495612_0008177 3300053078 Bacteria 4250
215 Ga0495612_0019841 3300053078 Bacteria 2693
216 Ga0500578_0045324 3300053086 Bacteria 2821
217 Ga0500652_008338 3300053131 Bacteria 3448
218 Ga0500600_0025100 3300053149 Bacteria 3545
219 Ga0500616_0000667 3300053153 Bacteria 40674
220 Ga0500616_0004807 3300053153 Bacteria 9456
221 Ga0500633_0002205 3300053160 Bacteria 3947
222 Ga0500634_0009260 3300053161 Bacteria 4974
223 Ga0500656_000642 3300053732 Bacteria 2696
224 2501944533 2501939600 Bacteria 6907073
225 2506865896 2506783011 Bacteria 5323186
226 2548695793 2547132424 Bacteria 8348532
227 2548697151 2547132424 Bacteria 8348532
228 2586061069 2585427649 Bacteria 9053857
229 2616699579 2616644814 Bacteria 11555299
230 2616902762 2616644941 Bacteria 8510691
231 2623497956 2622736605 Bacteria 4992138
232 2623587494 2622736626 Bacteria 7181580
233 2643850039 2643221567 Bacteria 4163945
234 2643946846 2643221587 Bacteria 7586415
235 2644136041 2643221624 Bacteria 4384879
236 2644435027 2643221677 Bacteria 7584031
237 2772643810 2772190715 Bacteria 6959372
238 2774905333 2773857933 Bacteria 5818019
239 2831938612 2831935698 Bacteria 5963223
240 2832010952 2832004796 Bacteria 6538017
241 2837273972 2837268691 Bacteria 7850704
242 2852641801 2852635781 Bacteria 8251373
243 2855672787 2855670206 Bacteria 7120389
244 2855682995 2855676851 Bacteria 7063653
245 2855686179 2855683550 Bacteria 7134265
246 2856861361 2856858025 Bacteria 7255264
247 2857294879 2857288857 Bacteria 7189066
248 2858855427 2858848962 Bacteria 6963058
249 2858875301 2858868258 Bacteria 7683772
250 2858885488 2858882152 Bacteria 7230291
251 2858889616 2858888857 Bacteria 7060307
252 2858902029 2858895516 Bacteria 7378898
253 2862575557 2862574272 Bacteria 10567477
254 2866069136 2866065130 Bacteria 6518152
255 2867305858 2867302475 Bacteria 7087181
256 2867481374 2867475112 Bacteria 6909112
257 2867509899 2867507094 Bacteria 6506033
258 2869054842 2869048445 Bacteria 6875584
259 2869064435 2869061728 Bacteria 7112407
260 2869072554 2869068681 Bacteria 7205615
261 2880492723 2880489317 Bacteria 7096270
262 2880499592 2880495981 Bacteria 7340502
263 2902585692 2902582711 Bacteria 6187705
264 2915771144 2915768154 Bacteria 8424322
265 2918507920 2918501144 Bacteria 8668083
266 2919713559 2919713450 Bacteria 7431245
267 2929221554 2929219909 Bacteria 6984360
268 2935391285 2935390628 Bacteria 7043367
269 2935392993 2935390628 Bacteria 7043367
270 2966604650 2966598605 Bacteria 7676064
271 2990088988 2990088156 Bacteria 6657676
272 2996224743 2996221748 Bacteria 6799777
273 2997452356 2997451912 Bacteria 8492419
274 2997600784 2997600082 Bacteria 9896405
275 3006323448 3006321560 Bacteria 8247479
276 3006327183 3006321560 Bacteria 8247479
277 3006491911 3006486233 Bacteria 8157040
278 649812116 649633069 Bacteria 6962533
279 8001787599 8001781756 Bacteria 9586736
280 8003860858 8003856774 Bacteria 7675274
281 8025483595 8025478263 Bacteria 8209203
282 8033687698 8033684223 Bacteria 6906479
283 8047894368 8047893842 Bacteria 11723082
284 8048130359 8048127548 Bacteria 11053136
285 8048364684 8048356638 Bacteria 11044339
286 8048371385 8048369669 Bacteria 11666822
287 8048380186 8048379754 Bacteria 11877923
288 8054164498 8054160619 Bacteria 7783213
289 8054474447 8054472261 Bacteria 7464355
290 8054477369 8054472261 Bacteria 7464355
291 8054732233 8054727385 Bacteria 7558670
292 8055414695 8055412473 Bacteria 6257500
293 Ga0207700_10060650
294 Ga0068868_100157513
295 Ga0070668_100002413
296 Ga0070668_100008584
297 Ga0070709_10001265
298 Ga0070714_100023998
299 Ga0070713_100050923
300 Ga0070685_10065246
301 Ga0070706_100059600
302 Ga0070707_100009571
303 Ga0070707_100045512
304 Ga0070707_100071306
305 Ga0068853_100006285
306 Ga0068858_100015420
307 Ga0068862_100034214
308 Ga0081539_10009221
309 Ga0081539_10010580
310 Ga0070717_10022805
311 Ga0070715_10000255
312 Ga0070716_100005653
313 Ga0070712_100114588
314 Ga0075428_100010626
315 Ga0075430_100079108
316 Ga0075431_100035092
317 Ga0075429_100092542
318 Ga0114129_10000165
319 Ga0114129_10096388
320 Ga0114129_10195984
321 Ga0105243_10071720
322 Ga0157369_10128897
323 Ga0157375_10157307
324 Ga0213875_10003897
325 Ga0209758_1003197
326 Ga0207426_1001036
327 Ga0207426_1002124
328 Ga0207426_1004290
329 Ga0207692_10004411
330 Ga0207685_10004862
331 Ga0207699_10000640
332 Ga0207663_10001861
333 Ga0207646_10142485
334 Ga0207700_10002281
335 Ga0207664_10000771
336 Ga0207665_10001933
337 Ga0207668_10001176
338 Ga0207668_10019156
339 Ga0207678_10091087
340 Ga0207641_10171812
341 Ga0268265_10023482
342 Ga0307517_10004413
343 Ga0307515_10000741
344 Ga0307515_10010344
345 Ga0307512_10007301
346 Ga0307512_10011660
347 Ga0307512_10061707
348 Ga0307512_10064518
349 Ga0307513_10003800
350 Ga0307513_10004876
351 Ga0307509_10023396
352 Ga0307509_10042307
353 Ga0307408_100017567
354 Ga0307508_10007230
355 Ga0307508_10008822
356 Ga0307508_10062952
357 Ga0307514_10011281
358 Ga0307516_10069595
359 Ga0307413_10000251
360 Ga0307413_10009263
361 Ga0307410_10025289
362 Ga0307406_10006719
363 Ga0307409_100012468
364 Ga0307409_100083581
365 Ga0307416_100021966
366 Ga0307414_10137417
367 Ga0307507_10000005
368 Ga0307507_10000920
369 Ga0307507_10001371
370 Ga0307510_10092742
371 Ga0373926_0001872
372 Ga0373942_0000136
373 Ga0373962_0011023
374 Ga0373935_0000083
375 Ga0373947_0000013
376 Ga0395899_0008290
377 Ga0395900_0031624
378 Ga0436364_0397767
379 Ga0466969_0024254
380 Ga0466972_0004050
381 Ga0466972_0009567
382 Ga0466965_0003020
383 Ga0466966_0006329
384 Ga0466961_0019406
385 Ga0495617_014520
386 Ga0495592_0048136
387 Ga0495592_0056347
388 Ga0495603_0000591
389 Ga0495603_0001735
390 Ga0495603_0001975
391 Ga0495603_0004054
392 Ga0495603_0004353
393 Ga0495603_0005821
394 Ga0495603_0009170
395 Ga0495629_0000767
396 Ga0495629_0002185
397 Ga0495629_0040974
398 Ga0495629_0062846
399 Ga0495651_0085940
400 Ga0495662_0000374
401 Ga0495664_0001217
402 Ga0495585_0035826
403 Ga0495585_0039744
404 Ga0495594_0003827
405 Ga0495594_0006143
406 Ga0495594_0014925
407 Ga0495583_0019288
408 Ga0495606_0001079
409 Ga0495606_0026521
410 Ga0495618_0052341
411 Ga0495620_0010450
412 Ga0495628_0034899
413 Ga0495628_0080606
414 Ga0495628_0158967
415 Ga0495643_0006537
416 Ga0495643_0009433
417 Ga0495666_0013588
418 Ga0495666_0022437
419 Ga0495666_0023772
420 Ga0495652_0008112
421 Ga0495652_0130313
422 Ga0495652_0142301
423 Ga0495640_0005317
424 Ga0495622_0003686
425 Ga0495622_0008075
426 Ga0495622_0014786
427 Ga0495667_0007350
428 Ga0495668_0000157
429 Ga0495668_0021841
430 Ga0495634_0043182
431 Ga0495611_0014249
432 Ga0495611_0024987
433 Ga0495625_0000581
434 Ga0495625_0022927
435 Ga0495625_0057754
436 Ga0495635_0007435
437 Ga0495588_0006589
438 Ga0495588_0060705
439 Ga0495657_0006045
440 Ga0495657_0021843
441 Ga0495657_0037211
442 Ga0495623_0098852
443 Ga0495658_0013674
444 Ga0495613_0002860
445 Ga0495613_0006625
446 Ga0495613_0007182
447 Ga0495613_0008094
448 Ga0495613_0012349
449 Ga0495613_0053093
450 Ga0495613_0053542
451 Ga0495613_0135425
452 Ga0495624_0027795
453 Ga0495624_0051588
454 Ga0495670_0013936
455 Ga0495589_0005283
456 Ga0495589_0014371
457 Ga0495600_0008447
458 Ga0495600_0012674
459 Ga0495600_0058894
460 Ga0495604_0007378
461 Ga0495604_0023222
462 Ga0495604_0057512
463 Ga0495674_0010298
464 Ga0495674_0088879
465 Ga0495676_0002748
466 Ga0495676_0004479
467 Ga0495676_0005945
468 Ga0495676_0011064
469 Ga0495676_0011426
470 Ga0495676_0042046
471 Ga0495680_0058315
472 Ga0495683_0040248
473 Ga0495687_003909
474 Ga0495687_030446
475 Ga0495675_0023622
476 Ga0495685_001542
477 Ga0495685_001882
478 Ga0495593_0020144
479 Ga0495614_0000781
480 Ga0495626_0000582
481 Ga0495626_0031187
482 Ga0496101_0015110
483 Ga0496102_0296437
484 Ga0496104_0005898
485 Ga0496108_0000468
486 Ga0496108_0023008
487 Ga0496108_0069271
488 Ga0496108_0077293
489 Ga0496109_0021509
490 Ga0496112_0109660
491 Ga0496114_0010830
492 Ga0496114_0041100
493 Ga0496115_0016211
494 Ga0501032_0012744
495 Ga0501033_0078510
496 Ga0501036_0064716
497 Ga0501047_0003403
498 Ga0501073_0041914
499 Ga0501035_0028550
500 Ga0501044_0050802
501 Ga0501044_0141006
502 nmdc:mga05p37_2145_c1
503 nmdc:mga05p37_82431_c1
504 nmdc:mga09592_67895_c1
505 nmdc:mga06r32_263670_c1
506 Ga0495612_0008177
507 Ga0495612_0019841
508 Ga0500578_0045324
509 Ga0500652_008338
510 Ga0500600_0025100
511 Ga0500616_0000667
512 Ga0500616_0004807
513 Ga0500633_0002205
514 Ga0500634_0009260
515 Ga0500656_000642
516 2501944533
517 2506865896
518 2548695793
519 2548697151
520 2586061069
521 2616699579
522 2616902762
523 2623497956
524 2623587494
525 2643850039
526 2643946846
527 2644136041
528 2644435027
529 2772643810
530 2774905333
531 2831938612
532 2832010952
533 2837273972
534 2852641801
535 2855672787
536 2855682995
537 2855686179
538 2856861361
539 2857294879
540 2858855427
541 2858875301
542 2858885488
543 2858889616
544 2858902029
545 2862575557
546 2866069136
547 2867305858
548 2867481374
549 2867509899
550 2869054842
551 2869064435
552 2869072554
553 2880492723
554 2880499592
555 2902585692
556 2915771144
557 2918507920
558 2919713559
559 2929221554
560 2935391285
561 2935392993
562 2966604650
563 2990088988
564 2996224743
565 2997452356
566 2997600784
567 3006323448
568 3006327183
569 3006491911
570 649812116
571 8001787599
572 8003860858
573 8025483595
574 8033687698
575 8047894368
576 8048130359
577 8048364684
578 8048371385
579 8048380186
580 8054164498
581 8054474447
582 8054477369
583 8054732233
584 8055414695

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02518

HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

510

600

0.93

PF13185

GAF_2

GAF domain

81

221

0.93

PF07730

HisKA_3

Histidine kinase

403

468

0.88

PF01590

GAF

GAF domain

83

220

0.87

PF01590

GAF

GAF domain

251

386

0.84

PF13185

GAF_2

GAF domain

249

387

0.84

PF13492

GAF_3

GAF domain

251

388

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
2w3h-assembly1.cif.gz_B cyanide bound structure of the first gaf domain of mycobacterium tuberculosis doss 0.9679 35 178
2vzw-assembly1.cif.gz_A x-ray structure of the heme-bound gaf domain of sensory histidine kinase dost of mycobacterium tuberculosis 0.9639 37 179
4ynr-assembly1.cif.gz_A doss gafa domain reduced co bound crystal structure 0.9608 37 176
4yof-assembly1.cif.gz_A doss gafa domain reduced nitric oxide bound crystal structure 0.9591 37 175
2y79-assembly1.cif.gz_B structure of the first gaf domain e87a mutant of mycobacterium tuberculosis doss 0.9571 35 181
ID Description Score Start End Superfamily
4ynrA00 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9608 37 176 3.30.450.40
4ynrA00 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9274 37 176 3.30.450.40
af_P0AFA2_454_587_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.9046 415 548 3.30.565.10
af_P09835_373_498_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8609 425 549 3.30.565.10
af_P0AFA2_454_587_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8531 415 548 3.30.565.10
ID Description Score Start End GO Terms
AF-A0A3M2EN23-F1-model_v4 GAF domain-containing protein 0.9118 20 195
AF-A0A0F8ZGY8-F1-model_v4 GAF domain-containing protein 0.9013 15 204
AF-A0A1F3T077-F1-model_v4 GAF domain-containing protein 0.8589 181 353
AF-A0A7C5BFD4-F1-model_v4 GAF domain-containing protein 0.8505 22 187 GO:0016020
AF-A0A6G3X3M3-F1-model_v4 GAF domain-containing protein 0.8447 19 145

Map