F388231

General Info

Members Datasets Scaffolds Average Seq Length
287 221 179 531

Family's Representative Sequence

Representative Sequence 3300048925|Ga0496122_0044697|Ga0496122_0044697_1661_3412
Length 583
Sequence VEQAAEGGYLHLPPLSWQDQMNPRCLESAEKAAATKHRRTPIATAARECSLMKTYQNLLSAALIAVALNSTAITAVFAKTLIYCSEASPEMFDAAQTTSGAVYDASARNLSNGLVKIKRGSTELEPGLAESWDVSADGKEYIFHLRKGVKFHTTSYFTPTRDFNADDVIFSFERQGNKDNPYYNQGTWPQYGAYSFPTLIEKIERIDDNTVKFVLTRPEATFIPSLSLTFAVIQSKEYGDKLVAENRIVEFSQQPIGTGPYQFVAYQKDSAIRYQANPDYWGGKQKIDNLIFAITPDAAVRHQKLSSGECHVIAAPNPADIAEMKKDPAIEMQNKEGLNLSFLAYNTQQKPFDDVRVRKALNMAVNKPAIIDAVYLGSAVVSVNPLPPSVWGYNKAVKDDAYDPEQARKLLEEAGVKDLKMKIWAMPVQRPYMPNARRAAELIQADFAKVGVTADIVSYDWGEYLKRSLEKDRDGAVMLGWTGGIADPDNFLAALLSCQAVGSANRANWCDQDFEKLIQAAKLTTDQAERSRLYQQAQLVFKEQAPWLTIAHQIVEQPVSKKVKNFRIDPFGGYLFEDVDIEE

Samples

Sample ID Description Type Environment
1 2503198000 Mesorhizobium opportunistum WSM2075 Isolate Nodule
2 2512875024 Mesorhizobium loti R88b Isolate Nodule
3 2513237164 Mesorhizobium loti CJ3sym Isolate Nodule
4 2523231067 Pleomorphomonas oryzae DSM 16300 Isolate Unclassified
5 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
6 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
7 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
8 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
9 2582581294 Rhizobium sp. CF394 Isolate Rhizosphere
10 2599185210 Rhizobium sp. NFACC06-2 Isolate Rhizoplane
11 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
12 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
13 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
14 2643221557 Ensifer sp. Root558 Isolate Unclassified
15 2643221582 Rhizobium sp. Root651 Isolate Unclassified
16 2643221610 Ensifer sp. Root74 Isolate Unclassified
17 2643221618 Ensifer sp. Root231 Isolate Unclassified
18 2643221626 Ensifer sp. Root31 Isolate Unclassified
19 2643221655 Ensifer sp. Root1252 Isolate Unclassified
20 2643221659 Ensifer sp. Root127 Isolate Unclassified
21 2643221668 Ensifer sp. Root423 Isolate Unclassified
22 2643221675 Ensifer sp. Root1298 Isolate Unclassified
23 2643221680 Ensifer sp. Root1312 Isolate Unclassified
24 2643221693 Rhizobium sp. Root491 Isolate Unclassified
25 2643221698 Ensifer sp. Root142 Isolate Unclassified
26 2643221712 Ensifer sp. Root258 Isolate Unclassified
27 2643221723 Ensifer sp. Root278 Isolate Unclassified
28 2643221726 Ensifer sp. Root954 Isolate Unclassified
29 2671180139 Chelativorans sp. A52C2 Isolate Unclassified
30 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
31 2751185800 Brucella pituitosa AA2 Isolate Unclassified
32 2757320392 Phyllobacterium leguminum ORS 1419 Isolate Nodule
33 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
34 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
35 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
36 2834578030 Paracoccus thiocyanatus SST Isolate Unclassified
37 2837651117 Pseudohoeflea suaedae YC6898 Isolate Unclassified
38 2838675328 Agrobacterium radiobacter SEMIA 410 Isolate Nodule
39 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
40 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
41 2838724970 Agrobacterium radiobacter SEMIA 437 Isolate Nodule
42 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
43 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
44 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
45 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
46 2842130223 Agrobacterium radiobacter SEMIA 441 Isolate Nodule
47 2842152218 Agrobacterium radiobacter SEMIA 457 Isolate Nodule
48 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
49 2842175837 Agrobacterium radiobacter SEMIA 462 Isolate Nodule
50 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
51 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
52 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
53 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
54 2854911287 Brucella lupini LUP21 Isolate Unclassified
55 2871488783 Mesorhizobium sp. M4B.F.Ca.ET.203.01.1.1 Isolate Nodule
56 2878753008 Mesorhizobium sp. M4B.F.Ca.ET.150.01.1.1 Isolate Nodule
57 2881861095 Mesorhizobium sp. M4B.F.Ca.ET.049.02.1.2 Isolate Nodule
58 2885318864 Mesorhizobium sp. M4B.F.Ca.ET.017.02.2.1 Isolate Nodule
59 2888337043 Mesorhizobium sp. M8A.F.Ca.ET.057.01.1.1 Isolate Nodule
60 2889914905 Chelativorans alearense UJN715 Isolate Rhizosphere
61 2891048133 Martelella lutilitoris GH2-6 Isolate Rhizosphere
62 2898795034 Rhodobacter sp. SGA-6-6 Isolate Rhizosphere
63 2899259804 Paracoccus aeridis JC501 Isolate Rhizosphere
64 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
65 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
66 2903492973 Mesorhizobium sp. M00.F.Ca.ET.220.01.1.1 Isolate Nodule
67 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
68 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
69 2919679072 Pseudotabrizicola sp. 4114 Isolate Unclassified
70 2924784321 Mesorhizobium sp. M4B.F.Ca.ET.143.01.1.1 Isolate Nodule
71 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
72 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
73 2933006813 Rhizobium sp. SEMIA 439 Isolate Unclassified
74 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
75 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
76 2937822353 Mesorhizobium neociceri CCANP35 Isolate Nodule
77 2937843397 Mesorhizobium xinjiangense lm94 Isolate Rhizosphere
78 2941499720 Ensifer sp. 4252 Isolate Rhizosphere
79 2952252522 Salinicola sp. DM10 Isolate Unclassified
80 2961170736 Mesorhizobium sp. M4B.F.Ca.ET.200.01.1.1 Isolate Nodule
81 2967996073 Mesorhizobium sp. M4B.F.Ca.ET.169.01.1.1 Isolate Nodule
82 2968003550 Mesorhizobium sp. M4B.F.Ca.ET.215.01.1.1 Isolate Nodule
83 2970503327 Mesorhizobium sp. M4B.F.Ca.ET.190.01.1.1 Isolate Nodule
84 2977821940 Mesorhizobium sp. M4B.F.Ca.ET.214.01.1.1 Isolate Nodule
85 2977828996 Mesorhizobium sp. M4B.F.Ca.ET.089.01.1.1 Isolate Nodule
86 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
87 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
88 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
89 2979808191 Mesorhizobium sp. M4B.F.Ca.ET.172.01.1.1 Isolate Nodule
90 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
91 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
92 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
93 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
94 2995392953 Martelella limonii NBRC 109441 Isolate Unclassified
95 3000017691 Rhodobacteraceae bacterium GH2-2 Isolate Rhizosphere
96 3002141150 Phyllobacterium sp. 628 Isolate Unclassified
97 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
98 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
99 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
100 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
101 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
102 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
103 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
104 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
105 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
106 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
107 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
108 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
109 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
110 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
111 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
112 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
113 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
114 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
115 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
116 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
117 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
118 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
119 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
120 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
121 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
122 3300013249 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Metagenome Rhizosphere
123 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
124 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
125 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
126 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
127 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
128 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
129 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
130 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
131 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
132 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
133 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
134 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
135 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
136 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
137 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
138 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
139 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
140 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
141 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
142 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
143 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
144 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
145 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
146 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
147 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
148 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
149 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
150 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
151 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
152 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
153 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
154 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
155 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
156 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
157 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
158 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
159 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
160 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
161 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
162 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
163 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
164 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
165 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
166 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
167 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
168 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
169 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
170 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
171 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
172 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
173 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
174 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
175 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
176 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
177 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
178 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
179 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
180 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
181 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
182 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
183 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
184 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
185 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
186 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
187 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
188 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
189 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
190 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
191 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
192 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
193 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
194 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
195 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
196 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
197 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
198 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
199 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
200 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
201 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
202 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
203 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
204 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
205 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
206 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
207 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
208 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
209 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
210 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
211 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
212 3300059510 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 55R_CD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
213 3300059643 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 13R_AD_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
214 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
215 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
216 8002285264 Aminobacter anthyllidis LMG 26462 Isolate Nodule
217 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
218 8004374579 Mesorhizobium sp. M4B.F.Ca.ET.211.01.1.1 Isolate Nodule
219 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified
220 8045864390 Aurantimonas endophytica KCTC 52296 Isolate Unclassified
221 8054563764 Acuticoccus kalidii M5D2P5 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 58.89
Metatranscriptomes 3.48
Isolates 37.63

Biome Distribution

Category Percentage (%)
Aerial Root 1.39
Bulb 0
Endosphere 16.03
Nodule 14.29
Rhizoplane 1.39
Rhizosphere 42.86
Stem 0
Stem Tuber 0
Unclassified 24.04

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25158J39367_1001704 3300002739 Bacteria 3768
2 JGI25159J45721_1000335 3300002987 Bacteria 21698
3 JGI25151J46595_10015442 3300003187 Bacteria 3365
4 JGI25165J46597_1002298 3300003214 Bacteria 6520
5 JGI25160J50197_1000538 3300003354 Bacteria 21698
6 Ga0006562J51391_1007027 3300003578 Bacteria 5745
7 Ga0006562J51391_1027265 3300003578 Bacteria 3618
8 Ga0055526_1000883 3300003771 Bacteria 22295
9 Ga0055524_1000581 3300003775 Bacteria 26755
10 Ga0055536_1002350 3300003781 Bacteria 10708
11 Ga0055543_1000561 3300004625 Bacteria 20685
12 Ga0065165_1000196 3300005262 Bacteria 104569
13 Ga0070659_100154063 3300005366 Bacteria 1876
14 Ga0070663_100044172 3300005455 Bacteria 3140
15 Ga0070665_100004646 3300005548 Bacteria 14351
16 Ga0070665_100089084 3300005548 Bacteria 3092
17 Ga0075368_10002112 3300006042 Bacteria 6414
18 Ga0075363_100000764 3300006048 Bacteria 11024
19 Ga0075363_100010439 3300006048 Bacteria 4413
20 Ga0075363_100018564 3300006048 Bacteria 3468
21 Ga0075363_100021187 3300006048 Bacteria 3270
22 Ga0075364_10009645 3300006051 Bacteria 5800
23 Ga0075362_10008202 3300006177 Bacteria 3986
24 Ga0075369_10011716 3300006186 Bacteria 3453
25 Ga0075366_10006595 3300006195 Bacteria 6369
26 Ga0075370_10003374 3300006353 Bacteria 7587
27 Ga0099826_10001282 3300006948 Bacteria 14779
28 Ga0157373_10037105 3300013100 Bacteria 3496
29 Ga0157371_10000235 3300013102 Bacteria 79378
30 Ga0157370_10002006 3300013104 Bacteria 25031
31 Ga0157370_10123224 3300013104 Bacteria 2420
32 Ga0171463_1013 3300013249 Bacteria 94945
33 Ga0183363_1131 3300015690 Bacteria 19060
34 Ga0209436_100761 3300025208 Bacteria 13349
35 Ga0207427_102189 3300025231 Bacteria 5544
36 Ga0209233_1001982 3300025261 Bacteria 7758
37 Ga0209130_1000075 3300025284 Bacteria 171698
38 Ga0209676_1003195 3300025292 Bacteria 10393
39 Ga0209025_1000277 3300025294 Bacteria 117930
40 Ga0209025_1005830 3300025294 Bacteria 9864
41 Ga0209564_1000869 3300025295 Bacteria 40151
42 Ga0209050_1003033 3300025298 Bacteria 12956
43 Ga0209256_1000828 3300025299 Bacteria 39174
44 Ga0209256_1007219 3300025299 Bacteria 5560
45 Ga0207426_1000163 3300025302 Bacteria 171698
46 Ga0209257_1002128 3300025304 Bacteria 20658
47 Ga0207647_10010500 3300025904 Bacteria 6540
48 Ga0207678_10022811 3300026067 Bacteria 5481
49 Ga0207648_10066084 3300026089 Bacteria 3154
50 Ga0209371_1000035 3300027312 Bacteria 368979
51 Ga0209371_1001482 3300027312 Bacteria 15675
52 Ga0209282_1000173 3300027666 Bacteria 36304
53 Ga0268266_10004228 3300028379 Bacteria 13826
54 Ga0265318_10009174 3300028577 Bacteria 4363
55 Ga0307515_10000252 3300028794 Bacteria 132500
56 Ga0268256_1000037 3300030500 Bacteria 367024
57 Ga0316181_1025740 3300030744 Bacteria 2979
58 Ga0265340_10019311 3300031247 Bacteria 3509
59 Ga0265339_10027829 3300031249 Bacteria 3220
60 Ga0265316_10014272 3300031344 Bacteria 7001
61 Ga0265316_10048811 3300031344 Bacteria 3338
62 Ga0265313_10004919 3300031595 Bacteria 10013
63 Ga0265313_10020109 3300031595 Bacteria 3692
64 Ga0265314_10014400 3300031711 Bacteria 6332
65 Ga0265342_10005039 3300031712 Bacteria 10191
66 Ga0265342_10015016 3300031712 Bacteria 5113
67 Ga0316576_10005626 3300031727 Bacteria 7693
68 Ga0316576_10022759 3300031727 Bacteria 4356
69 Ga0316592_1003633 3300033524 Bacteria 2799
70 Ga0316586_1003262 3300033527 Bacteria 2115
71 Ga0316588_1004999 3300033528 Bacteria 2552
72 Ga0316588_1009381 3300033528 Bacteria 2040
73 Ga0316588_1010314 3300033528 Bacteria 1967
74 Ga0316588_1012291 3300033528 Bacteria 1844
75 Ga0316574_0000091 3300035398 Bacteria 25911
76 Ga0316574_0010606 3300035398 Bacteria 5211
77 Ga0316574_0055001 3300035398 Bacteria 2487
78 Ga0373935_0097351 3300035692 Bacteria 1935
79 Ga0373927_0000253 3300035695 Bacteria 42014
80 Ga0316584_0044154 3300036712 Bacteria 3324
81 Ga0373925_0004876 3300037068 Bacteria 10098
82 Ga0395899_0025498 3300037312 Bacteria 4463
83 Ga0453684_0006877 3300044712 Bacteria 21353
84 Ga0453684_0013399 3300044712 Bacteria 13323
85 Ga0495606_0013800 3300046507 Bacteria 6352
86 Ga0495588_0001431 3300046674 Bacteria 10213
87 Ga0496116_0000582 3300048919 Bacteria 48827
88 Ga0496116_0004319 3300048919 Bacteria 13599
89 Ga0496117_0000066 3300048920 Bacteria 253534
90 Ga0496118_0000231 3300048921 Bacteria 97930
91 Ga0496119_0004810 3300048922 Bacteria 13249
92 Ga0496119_0008996 3300048922 Bacteria 8668
93 Ga0496120_0000463 3300048923 Bacteria 64041
94 Ga0496121_0013383 3300048924 Bacteria 8823
95 Ga0496122_0000057 3300048925 Bacteria 253452
96 Ga0496122_0004319 3300048925 Bacteria 17795
97 Ga0496122_0008931 3300048925 Bacteria 10662
98 Ga0496122_0012514 3300048925 Bacteria 8435
99 Ga0496122_0040512 3300048925 Bacteria 3700
100 Ga0496122_0044697 3300048925 Bacteria 3453
101 Ga0496122_0053382 3300048925 Bacteria 3047
102 Ga0496122_0060864 3300048925 Bacteria 2777
103 Ga0496123_0000401 3300048926 Bacteria 79665
104 Ga0496124_0012645 3300048927 Bacteria 8304
105 Ga0496124_0027157 3300048927 Bacteria 5144
106 Ga0496125_0000101 3300048928 Bacteria 202248
107 Ga0496125_0000830 3300048928 Bacteria 49880
108 Ga0496125_0001132 3300048928 Bacteria 40590
109 Ga0496125_0002530 3300048928 Bacteria 23601
110 Ga0496125_0014393 3300048928 Bacteria 7706
111 Ga0496125_0062985 3300048928 Bacteria 2961
112 Ga0501032_0011231 3300049569 Bacteria 6433
113 Ga0501033_0002859 3300049570 Bacteria 14469
114 Ga0501033_0075942 3300049570 Bacteria 2466
115 Ga0501034_0000088 3300049571 Bacteria 166615
116 Ga0501034_0000160 3300049571 Bacteria 126787
117 Ga0501034_0014101 3300049571 Bacteria 8234
118 Ga0501034_0022248 3300049571 Bacteria 6461
119 Ga0501036_0201414 3300049572 Bacteria 1674
120 Ga0501037_0000283 3300049573 Bacteria 43184
121 Ga0501037_0041052 3300049573 Bacteria 3403
122 Ga0501038_0016237 3300049574 Bacteria 6751
123 Ga0501038_0061906 3300049574 Bacteria 3200
124 Ga0501039_0026891 3300049575 Bacteria 4423
125 Ga0501040_0002102 3300049576 Bacteria 12831
126 Ga0501041_0063909 3300049577 Bacteria 2254
127 Ga0501042_0011601 3300049578 Bacteria 5951
128 Ga0501043_0000005 3300049579 Bacteria 254466
129 Ga0501047_0032264 3300049581 Bacteria 5055
130 Ga0501047_0033349 3300049581 Bacteria 4970
131 Ga0501047_0063910 3300049581 Bacteria 3550
132 Ga0501047_0161313 3300049581 Bacteria 2114
133 Ga0501069_0000033 3300049585 Bacteria 92477
134 Ga0501070_0000055 3300049586 Bacteria 99156
135 Ga0501070_0000949 3300049586 Bacteria 26162
136 Ga0501070_0003497 3300049586 Bacteria 13608
137 Ga0501070_0029997 3300049586 Bacteria 4557
138 Ga0501070_0052484 3300049586 Bacteria 3384
139 Ga0501072_0029164 3300049588 Bacteria 4308
140 Ga0501073_0013274 3300049589 Bacteria 6002
141 Ga0501073_0041427 3300049589 Bacteria 3254
142 Ga0501074_0000053 3300049590 Bacteria 56031
143 Ga0501074_0040047 3300049590 Bacteria 3394
144 Ga0501075_0001061 3300049591 Bacteria 17681
145 Ga0501079_0005333 3300049741 Bacteria 9568
146 Ga0501080_0000448 3300049742 Bacteria 32030
147 Ga0501080_0007173 3300049742 Bacteria 10058
148 Ga0501080_0022084 3300049742 Bacteria 5896
149 Ga0501080_0068293 3300049742 Bacteria 3306
150 Ga0501083_0000063 3300049744 Bacteria 74976
151 Ga0501083_0023398 3300049744 Bacteria 4285
152 Ga0501035_0000086 3300049822 Bacteria 115822
153 Ga0501035_0000288 3300049822 Bacteria 59750
154 Ga0501035_0002104 3300049822 Bacteria 19786
155 Ga0501035_0067368 3300049822 Bacteria 3177
156 Ga0501044_0000242 3300049823 Bacteria 69190
157 Ga0501044_0004354 3300049823 Bacteria 15856
158 Ga0501044_0036505 3300049823 Bacteria 5142
159 Ga0501045_0018013 3300049824 Bacteria 5015
160 nmdc:mga03683_4299_c1 3300050489 Bacteria 4706
161 nmdc:mga03n38_2536_c1 3300050490 Bacteria 5666
162 nmdc:mga00v17_59_c1 3300050491 Bacteria 36576
163 nmdc:mga0yw44_1407_c1 3300050492 Bacteria 9536
164 nmdc:mga06z11_23005_c1 3300050494 Bacteria 2921
165 nmdc:mga07m45_850_c1 3300050496 Bacteria 13267
166 nmdc:mga0sz30_2400_c1 3300050516 Bacteria 6685
167 nmdc:mga0sz30_6227_c1 3300050516 Bacteria 4424
168 Ga0500608_002146 3300053122 Bacteria 7080
169 Ga0500559_0013105 3300053136 Bacteria 3516
170 Ga0500604_0002396 3300053151 Bacteria 5119
171 Ga0500620_000274 3300053155 Bacteria 9968
172 Ga0500622_0000466 3300053156 Bacteria 38413
173 Ga0501084_0004721 3300054114 Bacteria 11133
174 Ga0501084_0026830 3300054114 Bacteria 4811
175 Ga0590071_005420 3300059421 Bacteria 3065
176 Ga0587090_000081 3300059510 Bacteria 5561
177 Ga0587072_000363 3300059643 Bacteria 4387
178 Ga0501082_0007030 3300060353 Bacteria 9711
179 Ga0501082_0114755 3300060353 Bacteria 2332

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046507 Ga0495606_0013800 Ga0495606_0013800_3086_4429 447
2 iso_pu_bacteria 2840764183 2840766673 458
3 3300059421 Ga0590071_005420 Ga0590071_005420_649_2241 514
4 3300048922 Ga0496119_0004810 Ga0496119_0004810_9395_10942 515
5 3300049581 Ga0501047_0032264 Ga0501047_0032264_2392_3972 516
6 3300049589 Ga0501073_0041427 Ga0501073_0041427_1324_2904 516
7 3300049744 Ga0501083_0023398 Ga0501083_0023398_1640_3220 516
8 3300049581 Ga0501047_0161313 Ga0501047_0161313_542_2101 519
9 3300049586 Ga0501070_0029997 Ga0501070_0029997_23_1618 520
10 3300049742 Ga0501080_0068293 Ga0501080_0068293_432_2027 520
11 3300054114 Ga0501084_0026830 Ga0501084_0026830_642_2234 520
12 3300060353 Ga0501082_0114755 Ga0501082_0114755_141_1733 520
13 3300049742 Ga0501080_0000448 Ga0501080_0000448_13945_15528 522
14 3300049744 Ga0501083_0000063 Ga0501083_0000063_43083_44666 522
15 iso_pu_bacteria 2888337043 2888343359 522
16 iso_pu_bacteria 2534681796 2535518465 523
17 iso_pu_bacteria 2582581294 2585203983 523
18 iso_pu_bacteria 2871488783 2871491086 523
19 iso_pu_bacteria 2878753008 2878755495 523
20 iso_pu_bacteria 2881861095 2881867811 523
21 iso_pu_bacteria 2885318864 2885324350 523
22 iso_pu_bacteria 2903492973 2903499030 523
23 iso_pu_bacteria 2924784321 2924791532 523
24 iso_pu_bacteria 2961170736 2961176561 523
25 iso_pu_bacteria 2967996073 2968001422 523
26 iso_pu_bacteria 2968003550 2968007475 523
27 iso_pu_bacteria 2970503327 2970509232 523
28 iso_pu_bacteria 2977821940 2977824635 523
29 iso_pu_bacteria 2977828996 2977831900 523
30 iso_pu_bacteria 2979808191 2979813911 523
31 iso_pu_bacteria 8004374579 8004377074 523
32 iso_pu_bacteria 8005542996 8005549385 523
33 iso_pu_bacteria 2503198000 2503198741 524
34 iso_pu_bacteria 2512875024 2512962058 524
35 iso_pu_bacteria 2513237164 2514039136 524
36 iso_pu_bacteria 2751185800 2753361522 524
37 iso_pu_bacteria 2758568016 2758637998 524
38 iso_pu_bacteria 2854911287 2854915716 524
39 iso_pu_bacteria 2919679072 2919679090 524
40 iso_pu_bacteria 2937822353 2937826462 524
41 iso_pu_bacteria 2952252522 2952255966 524
42 iso_pu_bacteria 3002141150 3002145714 524
43 3300003214 JGI25165J46597_1002298 JGI25165J46597_10022987 525
44 3300005366 Ga0070659_100154063 Ga0070659_1001540631 525
45 3300005455 Ga0070663_100044172 Ga0070663_1000441723 525
46 3300025231 Ga0207427_102189 Ga0207427_1021892 525
47 3300025261 Ga0209233_1001982 Ga0209233_10019829 525
48 3300025904 Ga0207647_10010500 Ga0207647_100105003 525
49 3300026067 Ga0207678_10022811 Ga0207678_100228112 525
50 3300049570 Ga0501033_0002859 Ga0501033_0002859_10852_12444 525
51 3300049570 Ga0501033_0075942 Ga0501033_0075942_312_1904 525
52 3300049572 Ga0501036_0201414 Ga0501036_0201414_50_1642 525
53 3300049573 Ga0501037_0000283 Ga0501037_0000283_10739_12331 525
54 3300049579 Ga0501043_0000005 Ga0501043_0000005_189302_190894 525
55 3300049581 Ga0501047_0063910 Ga0501047_0063910_1384_2976 525
56 3300049585 Ga0501069_0000033 Ga0501069_0000033_27268_28860 525
57 3300049586 Ga0501070_0000055 Ga0501070_0000055_15360_16952 525
58 3300049586 Ga0501070_0003497 Ga0501070_0003497_8788_10380 525
59 3300049590 Ga0501074_0000053 Ga0501074_0000053_39327_40919 525
60 3300049742 Ga0501080_0007173 Ga0501080_0007173_3251_4843 525
61 3300049822 Ga0501035_0000086 Ga0501035_0000086_50613_52205 525
62 3300049822 Ga0501035_0000288 Ga0501035_0000288_11130_12722 525
63 3300049823 Ga0501044_0000242 Ga0501044_0000242_16966_18558 525
64 3300050490 nmdc:mga03n38_2536_c1 nmdc:mga03n38_2536_c1_4040_5623 525
65 3300050496 nmdc:mga07m45_850_c1 nmdc:mga07m45_850_c1_2332_3915 525
66 iso_pu_bacteria 2898795034 2898795467 525
67 iso_pu_bacteria 2937843397 2937844881 525
68 3300033528 Ga0316588_1012291 Ga0316588_10122911 526
69 iso_pu_bacteria 2523231067 2523469729 526
70 iso_pu_bacteria 2738543031 2739348953 526
71 iso_pu_bacteria 2837651117 2837651122 526
72 iso_pu_bacteria 2889914905 2889916254 526
73 iso_pu_bacteria 2899259804 2899262365 526
74 3300003578 Ga0006562J51391_1027265 Ga0006562J51391_10272653 527
75 3300005548 Ga0070665_100089084 Ga0070665_1000890842 527
76 3300006048 Ga0075363_100018564 Ga0075363_1000185642 527
77 3300006186 Ga0075369_10011716 Ga0075369_100117162 527
78 3300036712 Ga0316584_0044154 Ga0316584_0044154_1344_2939 527
79 3300048919 Ga0496116_0000582 Ga0496116_0000582_12497_14086 527
80 3300048919 Ga0496116_0004319 Ga0496116_0004319_5270_6859 527
81 3300048924 Ga0496121_0013383 Ga0496121_0013383_6741_8330 527
82 3300048925 Ga0496122_0004319 Ga0496122_0004319_1839_3437 527
83 3300048925 Ga0496122_0040512 Ga0496122_0040512_1019_2617 527
84 3300048925 Ga0496122_0060864 Ga0496122_0060864_103_1701 527
85 3300048927 Ga0496124_0027157 Ga0496124_0027157_3501_5090 527
86 3300048928 Ga0496125_0000830 Ga0496125_0000830_32563_34161 527
87 3300048928 Ga0496125_0014393 Ga0496125_0014393_3959_5557 527
88 3300049571 Ga0501034_0014101 Ga0501034_0014101_6324_7928 527
89 3300049574 Ga0501038_0061906 Ga0501038_0061906_493_2097 527
90 3300049581 Ga0501047_0033349 Ga0501047_0033349_1421_3025 527
91 3300050492 nmdc:mga0yw44_1407_c1 nmdc:mga0yw44_1407_c1_5117_6706 527
92 3300050494 nmdc:mga06z11_23005_c1 nmdc:mga06z11_23005_c1_34_1623 527
93 3300050516 nmdc:mga0sz30_2400_c1 nmdc:mga0sz30_2400_c1_2936_4525 527
94 iso_pu_bacteria 2537561587 2537875723 527
95 iso_pu_bacteria 2554235003 2554244849 527
96 iso_pu_bacteria 2558860242 2559297317 527
97 iso_pu_bacteria 2599185210 2599605865 527
98 iso_pu_bacteria 2600255279 2601611580 527
99 iso_pu_bacteria 2600255308 2601748868 527
100 iso_pu_bacteria 2643221582 2643921858 527
101 iso_pu_bacteria 2643221693 2644519826 527
102 iso_pu_bacteria 2751185800 2753359921 527
103 iso_pu_bacteria 2757320392 2757571795 527
104 iso_pu_bacteria 2758568016 2758642241 527
105 iso_pu_bacteria 2808606387 2808988725 527
106 iso_pu_bacteria 2818991439 2819561411 527
107 iso_pu_bacteria 2834578030 2834579390 527
108 iso_pu_bacteria 2838675328 2838679436 527
109 iso_pu_bacteria 2838714209 2838718793 527
110 iso_pu_bacteria 2838719591 2838723791 527
111 iso_pu_bacteria 2838724970 2838729114 527
112 iso_pu_bacteria 2841846520 2841851118 527
113 iso_pu_bacteria 2841859092 2841863923 527
114 iso_pu_bacteria 2842124991 2842129811 527
115 iso_pu_bacteria 2842130223 2842134445 527
116 iso_pu_bacteria 2842152218 2842156441 527
117 iso_pu_bacteria 2842170452 2842175038 527
118 iso_pu_bacteria 2842175837 2842179955 527
119 iso_pu_bacteria 2842187318 2842191627 527
120 iso_pu_bacteria 2842211629 2842215944 527
121 iso_pu_bacteria 2842224351 2842228556 527
122 iso_pu_bacteria 2842515876 2842520705 527
123 iso_pu_bacteria 2854911287 2854912578 527
124 iso_pu_bacteria 2891048133 2891048590 527
125 iso_pu_bacteria 2899792073 2899794658 527
126 iso_pu_bacteria 2899845264 2899850403 527
127 iso_pu_bacteria 2915650412 2915653300 527
128 iso_pu_bacteria 2919114240 2919118833 527
129 iso_pu_bacteria 2926754445 2926758146 527
130 iso_pu_bacteria 2926760298 2926764287 527
131 iso_pu_bacteria 2933006813 2933011215 527
132 iso_pu_bacteria 2933011516 2933016245 527
133 iso_pu_bacteria 2933594066 2933598958 527
134 iso_pu_bacteria 2979089926 2979090611 527
135 iso_pu_bacteria 2979095461 2979096135 527
136 iso_pu_bacteria 2979100975 2979101663 527
137 iso_pu_bacteria 2984509177 2984510385 527
138 iso_pu_bacteria 2984518228 2984518911 527
139 iso_pu_bacteria 2984537506 2984538733 527
140 iso_pu_bacteria 2984601300 2984605440 527
141 iso_pu_bacteria 2995392953 2995394347 527
142 iso_pu_bacteria 3000017691 3000019357 527
143 iso_pu_bacteria 650716007 650843749 527
144 iso_pu_bacteria 8003570095 8003573990 527
145 iso_pu_bacteria 8045864390 8045864444 527
146 iso_pu_bacteria 8054563764 8054565028 527
147 3300006048 Ga0075363_100010439 Ga0075363_1000104393 528
148 3300006048 Ga0075363_100021187 Ga0075363_1000211872 528
149 3300006177 Ga0075362_10008202 Ga0075362_100082023 528
150 3300006195 Ga0075366_10006595 Ga0075366_100065954 528
151 3300006353 Ga0075370_10003374 Ga0075370_100033744 528
152 3300028794 Ga0307515_10000252 Ga0307515_10000252100 528
153 3300031727 Ga0316576_10022759 Ga0316576_100227592 528
154 3300035692 Ga0373935_0097351 Ga0373935_0097351_99_1691 528
155 3300035695 Ga0373927_0000253 Ga0373927_0000253_15465_17057 528
156 3300037068 Ga0373925_0004876 Ga0373925_0004876_8420_10012 528
157 3300048928 Ga0496125_0000101 Ga0496125_0000101_84724_86316 528
158 3300049571 Ga0501034_0000088 Ga0501034_0000088_35463_37055 528
159 3300049822 Ga0501035_0067368 Ga0501035_0067368_86_1678 528
160 3300050489 nmdc:mga03683_4299_c1 nmdc:mga03683_4299_c1_1066_2658 528
161 3300053122 Ga0500608_002146 Ga0500608_002146_2323_3915 528
162 3300053136 Ga0500559_0013105 Ga0500559_0013105_1315_2907 528
163 3300053151 Ga0500604_0002396 Ga0500604_0002396_27_1619 528
164 3300053155 Ga0500620_000274 Ga0500620_000274_1148_2740 528
165 3300053156 Ga0500622_0000466 Ga0500622_0000466_23251_24843 528
166 iso_pu_bacteria 2671180139 2671694236 528
167 3300013104 Ga0157370_10123224 Ga0157370_101232241 529
168 3300028577 Ga0265318_10009174 Ga0265318_100091743 529
169 3300031247 Ga0265340_10019311 Ga0265340_100193112 529
170 3300031249 Ga0265339_10027829 Ga0265339_100278292 529
171 3300031344 Ga0265316_10014272 Ga0265316_100142722 529
172 3300031344 Ga0265316_10048811 Ga0265316_100488112 529
173 3300031595 Ga0265313_10004919 Ga0265313_100049199 529
174 3300031595 Ga0265313_10020109 Ga0265313_100201092 529
175 3300031711 Ga0265314_10014400 Ga0265314_100144002 529
176 3300031712 Ga0265342_10005039 Ga0265342_1000503910 529
177 3300031712 Ga0265342_10015016 Ga0265342_100150162 529
178 3300033528 Ga0316588_1009381 Ga0316588_10093812 529
179 3300037312 Ga0395899_0025498 Ga0395899_0025498_544_2268 529
180 3300049569 Ga0501032_0011231 Ga0501032_0011231_1404_3002 529
181 3300049571 Ga0501034_0022248 Ga0501034_0022248_888_2486 529
182 3300049574 Ga0501038_0016237 Ga0501038_0016237_3722_5320 529
183 3300049575 Ga0501039_0026891 Ga0501039_0026891_865_2463 529
184 3300049586 Ga0501070_0000949 Ga0501070_0000949_23403_25052 529
185 3300049586 Ga0501070_0052484 Ga0501070_0052484_626_2275 529
186 3300049589 Ga0501073_0013274 Ga0501073_0013274_656_2254 529
187 3300049590 Ga0501074_0040047 Ga0501074_0040047_177_1826 529
188 3300049742 Ga0501080_0022084 Ga0501080_0022084_241_1890 529
189 3300049822 Ga0501035_0002104 Ga0501035_0002104_11791_13440 529
190 3300049823 Ga0501044_0004354 Ga0501044_0004354_12772_14421 529
191 3300049823 Ga0501044_0036505 Ga0501044_0036505_863_2461 529
192 3300003187 JGI25151J46595_10015442 JGI25151J46595_100154422 530
193 3300003578 Ga0006562J51391_1007027 Ga0006562J51391_10070272 530
194 3300005548 Ga0070665_100004646 Ga0070665_10000464610 530
195 3300006042 Ga0075368_10002112 Ga0075368_100021122 530
196 3300006048 Ga0075363_100000764 Ga0075363_1000007642 530
197 3300006051 Ga0075364_10009645 Ga0075364_100096453 530
198 3300006948 Ga0099826_10001282 Ga0099826_100012823 530
199 3300013100 Ga0157373_10037105 Ga0157373_100371053 530
200 3300013102 Ga0157371_10000235 Ga0157371_100002359 530
201 3300013104 Ga0157370_10002006 Ga0157370_1000200610 530
202 3300025294 Ga0209025_1000277 Ga0209025_100027750 530
203 3300027312 Ga0209371_1000035 Ga0209371_100003563 530
204 3300027312 Ga0209371_1001482 Ga0209371_10014828 530
205 3300027666 Ga0209282_1000173 Ga0209282_100017327 530
206 3300028379 Ga0268266_10004228 Ga0268266_100042284 530
207 3300030500 Ga0268256_1000037 Ga0268256_100003762 530
208 3300030744 Ga0316181_1025740 Ga0316181_10257402 530
209 3300046674 Ga0495588_0001431 Ga0495588_0001431_1256_2860 530
210 3300048920 Ga0496117_0000066 Ga0496117_0000066_69320_70924 530
211 3300048921 Ga0496118_0000231 Ga0496118_0000231_69373_70977 530
212 3300048923 Ga0496120_0000463 Ga0496120_0000463_7904_9508 530
213 3300048925 Ga0496122_0000057 Ga0496122_0000057_182529_184133 530
214 3300048925 Ga0496122_0053382 Ga0496122_0053382_901_2496 530
215 3300048926 Ga0496123_0000401 Ga0496123_0000401_8742_10346 530
216 3300048927 Ga0496124_0012645 Ga0496124_0012645_1547_3151 530
217 3300048928 Ga0496125_0062985 Ga0496125_0062985_71_1675 530
218 3300049571 Ga0501034_0000160 Ga0501034_0000160_120302_121897 530
219 3300049573 Ga0501037_0041052 Ga0501037_0041052_1014_2609 530
220 3300050491 nmdc:mga00v17_59_c1 nmdc:mga00v17_59_c1_9172_10776 530
221 3300050516 nmdc:mga0sz30_6227_c1 nmdc:mga0sz30_6227_c1_1335_2939 530
222 3300059510 Ga0587090_000081 Ga0587090_000081_1350_2954 530
223 3300059643 Ga0587072_000363 Ga0587072_000363_777_2381 530
224 3300033528 Ga0316588_1004999 Ga0316588_10049992 531
225 3300035398 Ga0316574_0000091 Ga0316574_0000091_7189_8787 531
226 3300044712 Ga0453684_0006877 Ga0453684_0006877_10297_11895 531
227 3300044712 Ga0453684_0013399 Ga0453684_0013399_1917_3518 531
228 3300048925 Ga0496122_0044697 Ga0496122_0044697_1661_3412 531
229 3300048928 Ga0496125_0001132 Ga0496125_0001132_4210_5961 531
230 3300049576 Ga0501040_0002102 Ga0501040_0002102_6488_8086 531
231 3300049577 Ga0501041_0063909 Ga0501041_0063909_185_1783 531
232 3300049578 Ga0501042_0011601 Ga0501042_0011601_210_1808 531
233 3300049588 Ga0501072_0029164 Ga0501072_0029164_872_2470 531
234 3300049591 Ga0501075_0001061 Ga0501075_0001061_2707_4305 531
235 3300049741 Ga0501079_0005333 Ga0501079_0005333_6269_7867 531
236 3300049824 Ga0501045_0018013 Ga0501045_0018013_992_2590 531
237 3300054114 Ga0501084_0004721 Ga0501084_0004721_1702_3300 531
238 3300060353 Ga0501082_0007030 Ga0501082_0007030_331_1929 531
239 3300026089 Ga0207648_10066084 Ga0207648_100660841 532
240 3300031727 Ga0316576_10005626 Ga0316576_100056264 533
241 3300033524 Ga0316592_1003633 Ga0316592_10036331 533
242 3300033527 Ga0316586_1003262 Ga0316586_10032622 533
243 3300033528 Ga0316588_1010314 Ga0316588_10103142 533
244 3300035398 Ga0316574_0010606 Ga0316574_0010606_3237_4841 533
245 3300035398 Ga0316574_0055001 Ga0316574_0055001_202_1806 533
246 iso_pu_bacteria 2599185352 2600194444 535
247 iso_pu_bacteria 2643221557 2643806937 535
248 iso_pu_bacteria 2643221610 2644068081 535
249 iso_pu_bacteria 2643221618 2644106510 535
250 iso_pu_bacteria 2643221626 2644149251 535
251 iso_pu_bacteria 2643221655 2644308392 535
252 iso_pu_bacteria 2643221659 2644332105 535
253 iso_pu_bacteria 2643221668 2644380040 535
254 iso_pu_bacteria 2643221675 2644418989 535
255 iso_pu_bacteria 2643221680 2644452370 535
256 iso_pu_bacteria 2643221698 2644544478 535
257 iso_pu_bacteria 2643221712 2644615780 535
258 iso_pu_bacteria 2643221723 2644673295 535
259 iso_pu_bacteria 2643221726 2644688238 535
260 iso_pu_bacteria 2751185800 2753356969 535
261 iso_pu_bacteria 2758568016 2758640559 535
262 iso_pu_bacteria 2941499720 2941505254 535
263 iso_pu_bacteria 8002285264 8002290676 535
264 3300002739 JGI25158J39367_1001704 JGI25158J39367_10017042 539
265 3300002987 JGI25159J45721_1000335 JGI25159J45721_100033519 539
266 3300003354 JGI25160J50197_1000538 JGI25160J50197_10005383 539
267 3300003771 Ga0055526_1000883 Ga0055526_10008833 539
268 3300003775 Ga0055524_1000581 Ga0055524_100058121 539
269 3300003781 Ga0055536_1002350 Ga0055536_10023507 539
270 3300004625 Ga0055543_1000561 Ga0055543_100056119 539
271 3300005262 Ga0065165_1000196 Ga0065165_10001963 539
272 3300013249 Ga0171463_1013 Ga0171463_101371 539
273 3300015690 Ga0183363_1131 Ga0183363_113118 539
274 3300025208 Ga0209436_100761 Ga0209436_10076110 539
275 3300025284 Ga0209130_1000075 Ga0209130_1000075155 539
276 3300025292 Ga0209676_1003195 Ga0209676_10031957 539
277 3300025294 Ga0209025_1005830 Ga0209025_10058307 539
278 3300025295 Ga0209564_1000869 Ga0209564_100086934 539
279 3300025298 Ga0209050_1003033 Ga0209050_10030332 539
280 3300025299 Ga0209256_1000828 Ga0209256_100082821 539
281 3300025299 Ga0209256_1007219 Ga0209256_10072193 539
282 3300025302 Ga0207426_1000163 Ga0207426_1000163155 539
283 3300025304 Ga0209257_1002128 Ga0209257_10021287 539
284 3300048922 Ga0496119_0008996 Ga0496119_0008996_6001_7620 539
285 3300048925 Ga0496122_0008931 Ga0496122_0008931_653_2272 539
286 3300048925 Ga0496122_0012514 Ga0496122_0012514_6306_7925 539
287 3300048928 Ga0496125_0002530 Ga0496125_0002530_12990_14609 539

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00496

SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

123

503

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
1dpp-assembly4.cif.gz_G dipeptide binding protein complex with glycyl-l-leucine 0.9817 32 538
1dpp-assembly4.cif.gz_G dipeptide binding protein complex with glycyl-l-leucine 0.9798 32 538
5f1q-assembly2.cif.gz_B crystal structure of periplasmic dipeptide transport protein from yersinia pestis 0.9797 32 538
5f1q-assembly2.cif.gz_B crystal structure of periplasmic dipeptide transport protein from yersinia pestis 0.9778 32 538
3m8u-assembly1.cif.gz_A crystal structure of glutathione-binding protein a (gbpa) from haemophilus parasuis sh0165 in complex with glutathione disulfide (gssg) 0.9724 32 539
ID Description Score Start End Superfamily
af_P23847_24_252_3.10.105.10 Alpha Beta;Roll;Dipeptide-binding Protein; domain 3;Dipeptide-binding Protein; Domain 3 0.9867 28 255 3.10.105.10
4qflB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9831 215 289 3.40.190.10
3tpaA03 Alpha Beta;Roll;Dipeptide-binding Protein; domain 3;Dipeptide-binding Protein; Domain 3 0.9747 293 509 3.10.105.10
af_P23847_24_252_3.10.105.10 Alpha Beta;Roll;Dipeptide-binding Protein; domain 3;Dipeptide-binding Protein; Domain 3 0.974 28 255 3.10.105.10
4qfkA03 Alpha Beta;Roll;Dipeptide-binding Protein; domain 3;Dipeptide-binding Protein; Domain 3 0.9704 293 509 3.10.105.10
ID Description Score Start End GO Terms
AF-A0A0F3IHQ5-F1-model_v4 Solute-binding protein family 5 domain-containing protein 0.9872 70 276 GO:0030288
GO:0042938
GO:1904680
AF-I6DMU4-F1-model_v4 Bacterial extracellular solute-binding s, 5 Middle family protein 0.9829 103 436 GO:0030288
GO:0042938
GO:1904680
AF-A0A0F3IHQ5-F1-model_v4 Solute-binding protein family 5 domain-containing protein 0.9825 70 276 GO:0030288
GO:0042938
GO:1904680
AF-A0A4Q3TQI7-F1-model_v4 ABC transporter substrate-binding protein 0.9818 29 163 GO:0030288
GO:0042938
GO:1904680
AF-Q14F37-F1-model_v4 DppA 0.9814 31 190 GO:0030288
GO:0042938
GO:1904680

Feature Viewer

pLDDT pTM Quality
91.82 0.88 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map