F385857

General Info

Members Datasets Scaffolds Average Seq Length
283 231 566 712

Family's Representative Sequence

Representative Sequence 3300049581|Ga0501047_0005236|Ga0501047_0005236_9727_12105
Length 792
Sequence MPVSKLKKTEAEAEWARLAEAIRAADAAYYQSDAPHLTDAEYDKLRLRLGEIEARFPELKTADSPTQNVGAPLTSGFGKVEHLKPMLSLDNMFRDEQVGDFLDRVRRFLNLKPDAELGVTAEPKIDGLSCSLLYEGGILVRAATRGDGRVGEDVTANVRTLDDVPEKLKGSPGQKGGWPARIEVRGEIYMTMADFARLRDAETAAGRRTPANPRNFAAGSLRQKDPEITRSRPLRFFAYAWGDVSESFADTQWDAVQAFKKWGFATNPEMKLCHSAEELLKVYHAIEAKRSSLGYDIDGVVYKVDRLDWQARLGFVSRSPRWATAHKFPAEQAMTQLLGIDIQVGRTGKLAPVARLQPVTVGGVTVANATLHNEDEIARLGVMINDWVIVQRAGDVIPQIVRVVVDKRPKDVHVFKFPRVCPFCGSEAVRGSGDDADEVDRRCTGGLICPAQAVERLKHFVSRRAFDIEGLGQKQIELFHEAGVITAPQHIFTLEKQLQKAGKPPLEAWEGFGETSAKKLYDAIDKASTQPLDRFLNALGVRHIGETNALLLARHFGSLEALQEAVAKAAEQRPGDAYRRLENVAGVGPGALAKLLDAAPELSTKAAGESDALEDQLGEIELPADNGKKPSRLNKTSRAALAAEFGDWSTFRREAQAAAKHRPGEDLIALASINGFGEVAAEALVDFFAEKHNREVVRALLAKVTVTPLKMADTSGSPVADKTVVFTGTLEKMTRDEAKAQAQALGAKVSGSVSKKTDYVVAGPGAGSKLADAEKLGVKVLSEDEWLKLIGR

Samples

Sample ID Description Type Environment
1 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
2 3300001430 Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 Metagenome Rhizosphere
3 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
4 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
19 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
20 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
21 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
22 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
23 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
24 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
25 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
26 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
27 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
28 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
29 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
30 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
31 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
34 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
35 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
36 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
37 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
38 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
39 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
40 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
41 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
42 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
43 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
44 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
45 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
46 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
47 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
48 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
49 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
51 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
52 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
53 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
54 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
55 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
56 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
57 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
58 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
59 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
60 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
61 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
62 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
63 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
65 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
99 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
101 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
102 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
103 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
104 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
105 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
106 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
107 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
108 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
109 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
110 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
111 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
112 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
113 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
114 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
115 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
116 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
117 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
118 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
119 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
120 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
121 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
122 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
123 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
124 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
125 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
126 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
127 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
128 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
129 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
130 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
131 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
132 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
133 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
134 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
135 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
136 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
137 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
138 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
139 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
140 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
141 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
142 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
143 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
144 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
145 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
146 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
147 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
148 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
149 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
153 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
154 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
155 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
157 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
158 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
159 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
160 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
161 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
162 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
163 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
164 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
165 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
166 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
167 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
168 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
169 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
170 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
171 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
172 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
173 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
174 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
175 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
176 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
177 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
178 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
179 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
180 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
181 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
182 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
183 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
184 2508501128 Bradyrhizobium sp. ARR65 Isolate Nodule
185 2510461069 Rhizobium sp. PDO1-076 Isolate Rhizosphere
186 2513237137 Bradyrhizobium elkanii USDA 94 Isolate Nodule
187 2517572143 Bradyrhizobium elkanii USDA 76 Isolate Nodule
188 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
189 2582581308 Rhizobium sp. OK494 Isolate Rhizosphere
190 2585427527 Rhizobium lusitanum YR374 Isolate Rhizosphere
191 2585427530 Rhizobium tropici YR635 Isolate Rhizosphere
192 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
193 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
194 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
195 2600254933 Rhizobium sp. NFR12 Isolate Rhizoplane
196 2615840626 Rhizobium lusitanum P1-7 Isolate Nodule
197 2643221547 Pseudolabrys sp. Root1462 Isolate Unclassified
198 2643221651 Afipia sp. Root123D2 Isolate Unclassified
199 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
200 2667528175 Rhizobium tropici NFR14 Isolate Rhizoplane
201 2775507049 Rhizobium sp. ACO-34A Isolate Unclassified
202 2818991453 Rhizobium lusitanum 1158 Isolate Unclassified
203 2824617872 Bradyrhizobium sp. HAMBI 2133 Isolate Unclassified
204 2824626560 Bradyrhizobium sp. HAMBI 2149 Isolate Unclassified
205 2824635225 Bradyrhizobium sp. HAMBI 2136 Isolate Unclassified
206 2824644064 Bradyrhizobium sp. HAMBI 2137 Isolate Unclassified
207 2824704595 Bradyrhizobium sp. HAMBI 2150 Isolate Unclassified
208 2824714736 Bradyrhizobium sp. HAMBI 2151 Isolate Unclassified
209 2824723954 Bradyrhizobium sp. HAMBI 2152 Isolate Unclassified
210 2899803654 Agrobacterium sp. a22-2 Isolate Unclassified
211 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
212 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
213 2906610324
214 2906635258 Bradyrhizobium sp. USDA 3458 Isolate Unclassified
215 2906660503 Bradyrhizobium brasilense UFLA 03-321 Isolate Unclassified
216 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
217 2908756301 Bradyrhizobium ivorense CI-41S Isolate Nodule
218 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
219 2922425934
220 2932794094 Bradyrhizobium sp. S3.2.6 Isolate Nodule
221 2935630451 Bradyrhizobium sp. I1.14.4 Isolate Nodule
222 2941507105 Bradyrhizobium sp. i1.12.3 Isolate Nodule
223 2941515067 Bradyrhizobium sp. i1.14.1 Isolate Nodule
224 2941523033 Bradyrhizobium sp. i1.8.4 Isolate Nodule
225 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
226 8005658619 Rhizobium terrae CC-HIH110 Isolate Unclassified
227 8006994254 Bradyrhizobium sp. sGM-13 Isolate Nodule
228 8019555841 Bradyrhizobium sp. JR6.1 Isolate Nodule
229 8054460903 Agrobacterium vaccinii B7.6 Isolate Unclassified
230 8055431914 Allorhizobium sonneratiae BGMRC 0089 Isolate Unclassified
231 8056689827 Bradyrhizobium semiaridum WSM 1704 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 83.63
Metatranscriptomes 0
Isolates 16.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.01
Nodule 7.07
Rhizoplane 7.07
Rhizosphere 67.14
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501047_0005236 3300049581 Bacteria 12177
2 JGI24032J14994_100276 3300001430 Bacteria 2701
3 JGI24738J21930_10000476 3300002075 Bacteria 11348
4 JGI25406J46586_10000789 3300003203 Bacteria 14957
5 rootH1_10004152 3300003323 Bacteria 56413
6 JGI25405J52794_10002022 3300003911 Bacteria 3438
7 Ga0070683_100061878 3300005329 Bacteria 3480
8 Ga0068868_100028682 3300005338 Bacteria 4258
9 Ga0070660_100026427 3300005339 Bacteria 4322
10 Ga0070689_100034535 3300005340 Bacteria 3858
11 Ga0070687_100005428 3300005343 Bacteria 5160
12 Ga0070668_100038866 3300005347 Bacteria 3639
13 Ga0070675_100008363 3300005354 Bacteria 8029
14 Ga0070675_100009040 3300005354 Bacteria 7740
15 Ga0070674_100019046 3300005356 Bacteria 4354
16 Ga0070673_100003153 3300005364 Bacteria 10216
17 Ga0070659_100048052 3300005366 Bacteria 3350
18 Ga0070667_100020583 3300005367 Bacteria 5476
19 Ga0070709_10023542 3300005434 Bacteria 3618
20 Ga0070714_100019922 3300005435 Bacteria 5473
21 Ga0070714_100019993 3300005435 Bacteria 5463
22 Ga0070713_100123769 3300005436 Bacteria 2271
23 Ga0070710_10013728 3300005437 Bacteria 4064
24 Ga0070710_10026494 3300005437 Bacteria 3080
25 Ga0070700_100032693 3300005441 Bacteria 3128
26 Ga0070663_100050747 3300005455 Bacteria 2952
27 Ga0070681_10043618 3300005458 Bacteria 4491
28 Ga0070685_10000716 3300005466 Bacteria 18035
29 Ga0070685_10004323 3300005466 Bacteria 7171
30 Ga0070699_100003612 3300005518 Bacteria 13675
31 Ga0070684_100072858 3300005535 Bacteria 3025
32 Ga0070704_100035497 3300005549 Bacteria 3390
33 Ga0068856_100051758 3300005614 Bacteria 4049
34 Ga0068864_100012215 3300005618 Bacteria 7098
35 Ga0068851_10027066 3300005834 Bacteria 2823
36 Ga0068863_100005905 3300005841 Bacteria 12002
37 Ga0081455_10002655 3300005937 Bacteria 21160
38 Ga0081455_10003627 3300005937 Bacteria 17687
39 Ga0081455_10034406 3300005937 Bacteria 4539
40 Ga0081538_10006048 3300005981 Bacteria 10753
41 Ga0081540_1001402 3300005983 Bacteria 20842
42 Ga0081540_1022006 3300005983 Bacteria 3774
43 Ga0081540_1027023 3300005983 Bacteria 3261
44 Ga0081539_10015699 3300005985 Bacteria 5483
45 Ga0075364_10027386 3300006051 Bacteria 3641
46 Ga0070716_100004389 3300006173 Bacteria 6740
47 Ga0070712_100034208 3300006175 Bacteria 3442
48 Ga0075366_10033230 3300006195 Bacteria 3038
49 Ga0075370_10035096 3300006353 Bacteria 2814
50 Ga0068871_100040129 3300006358 Bacteria 3748
51 Ga0075428_100007340 3300006844 Bacteria 12217
52 Ga0075430_100022855 3300006846 Bacteria 5318
53 Ga0075431_100000266 3300006847 Bacteria 40349
54 Ga0099826_10000198 3300006948 Bacteria 25811
55 Ga0099794_10001492 3300007265 Bacteria 8195
56 Ga0105240_10000440 3300009093 Bacteria 76796
57 Ga0111539_10000429 3300009094 Bacteria 52811
58 Ga0111539_10046510 3300009094 Bacteria 5190
59 Ga0105245_10033240 3300009098 Bacteria 4570
60 Ga0105247_10010984 3300009101 Bacteria 5466
61 Ga0114129_10000640 3300009147 Bacteria 43706
62 Ga0114129_10002372 3300009147 Bacteria 26153
63 Ga0114129_10011306 3300009147 Bacteria 12717
64 Ga0105237_10001024 3300009545 Bacteria 37600
65 Ga0105239_10043648 3300010375 Bacteria 4916
66 Ga0105239_10093821 3300010375 Bacteria 3314
67 Ga0105239_10126445 3300010375 Bacteria 2841
68 Ga0157370_10001822 3300013104 Bacteria 26247
69 Ga0157369_10020599 3300013105 Bacteria 7373
70 Ga0157375_10029565 3300013308 Bacteria 5155
71 Ga0163163_10005926 3300014325 Bacteria 10635
72 Ga0157379_10014665 3300014968 Bacteria 6873
73 Ga0182007_10006036 3300015262 Bacteria 5240
74 Ga0213875_10026713 3300021388 Bacteria 2746
75 Ga0228598_1006786 3300024227 Bacteria 2355
76 Ga0209677_100189 3300025253 Bacteria 50237
77 Ga0209233_1000139 3300025261 Bacteria 197070
78 Ga0209233_1006066 3300025261 Bacteria 3934
79 Ga0207710_10007096 3300025900 Bacteria 4754
80 Ga0207688_10000165 3300025901 Bacteria 28823
81 Ga0207680_10039077 3300025903 Bacteria 2751
82 Ga0207647_10025978 3300025904 Bacteria 3837
83 Ga0207685_10003399 3300025905 Bacteria 3865
84 Ga0207707_10003524 3300025912 Bacteria 13859
85 Ga0207695_10000180 3300025913 Bacteria 185504
86 Ga0207671_10000132 3300025914 Bacteria 115312
87 Ga0207671_10040940 3300025914 Bacteria 3429
88 Ga0207693_10002094 3300025915 Bacteria 17423
89 Ga0207693_10059375 3300025915 Bacteria 2996
90 Ga0207660_10002555 3300025917 Bacteria 11965
91 Ga0207662_10002660 3300025918 Bacteria 9010
92 Ga0207662_10047836 3300025918 Bacteria 2533
93 Ga0207657_10008360 3300025919 Bacteria 10509
94 Ga0207657_10026386 3300025919 Bacteria 5340
95 Ga0207650_10001504 3300025925 Bacteria 16684
96 Ga0207687_10050098 3300025927 Bacteria 2906
97 Ga0207700_10003542 3300025928 Bacteria 9092
98 Ga0207664_10006908 3300025929 Bacteria 7850
99 Ga0207706_10027026 3300025933 Bacteria 5133
100 Ga0207709_10013180 3300025935 Bacteria 4560
101 Ga0207670_10035914 3300025936 Bacteria 3219
102 Ga0207665_10002852 3300025939 Bacteria 11604
103 Ga0207665_10078431 3300025939 Bacteria 2269
104 Ga0207691_10000482 3300025940 Bacteria 39467
105 Ga0207689_10005787 3300025942 Bacteria 10976
106 Ga0207661_10058417 3300025944 Bacteria 3104
107 Ga0207679_10015382 3300025945 Bacteria 5055
108 Ga0207667_10020434 3300025949 Bacteria 7364
109 Ga0207667_10060672 3300025949 Bacteria 3958
110 Ga0207651_10046480 3300025960 Bacteria 2920
111 Ga0207712_10010573 3300025961 Bacteria 5862
112 Ga0207677_10002263 3300026023 Bacteria 10104
113 Ga0207639_10019991 3300026041 Bacteria 4786
114 Ga0207678_10007284 3300026067 Bacteria 9806
115 Ga0207708_10001645 3300026075 Bacteria 16633
116 Ga0207674_10098558 3300026116 Bacteria 2906
117 Ga0207675_100001173 3300026118 Bacteria 26117
118 Ga0207428_10011466 3300027907 Bacteria 7833
119 Ga0268266_10048439 3300028379 Bacteria 3643
120 Ga0265332_10001080 3300031238 Bacteria 15940
121 Ga0265339_10012242 3300031249 Bacteria 5246
122 Ga0265327_10000257 3300031251 Bacteria 105278
123 Ga0307408_100001572 3300031548 Bacteria 16865
124 Ga0265342_10000085 3300031712 Bacteria 100652
125 Ga0316574_0013196 3300035398 Bacteria 4745
126 Ga0373927_0000955 3300035695 Bacteria 22028
127 Ga0373927_0015179 3300035695 Bacteria 5093
128 Ga0373933_0000697 3300035724 Bacteria 20663
129 Ga0373947_0013259 3300035725 Bacteria 4721
130 Ga0316584_0035929 3300036712 Bacteria 3676
131 Ga0373925_0002490 3300037068 Bacteria 14722
132 Ga0395900_0006068 3300037418 Bacteria 12601
133 Ga0395898_0034749 3300037466 Bacteria 5018
134 Ga0436364_0834412 3300037853 Bacteria 9768
135 Ga0395901_0017267 3300038443 Bacteria 7366
136 Ga0436365_1253568 3300039437 Bacteria 9329
137 Ga0436361_1200524 3300039447 Bacteria 6090
138 Ga0439456_000003 3300042013 Viruses 283622
139 Ga0466958_0042138 3300045836 Bacteria 2748
140 Ga0466967_0001568 3300045976 Bacteria 13412
141 Ga0466967_0073811 3300045976 Bacteria 3061
142 Ga0495603_0020344 3300046455 Bacteria 4022
143 Ga0495638_0030534 3300046460 Bacteria 3467
144 Ga0495651_0025972 3300046462 Bacteria 4560
145 Ga0495582_0004923 3300046473 Bacteria 7486
146 Ga0495644_0013349 3300046523 Bacteria 3152
147 Ga0495598_0002562 3300046537 Bacteria 3761
148 Ga0495597_0000006 3300046542 Viruses 267320
149 Ga0495634_0010860 3300046642 Bacteria 6653
150 Ga0495634_0015567 3300046642 Bacteria 5459
151 Ga0495634_0047617 3300046642 Bacteria 2888
152 Ga0495581_0011829 3300047315 Bacteria 5051
153 Ga0495674_0007252 3300047319 Bacteria 10609
154 Ga0495684_0005151 3300047471 Bacteria 10189
155 Ga0495686_0000025 3300047472 Bacteria 388098
156 Ga0496100_0031065 3300048903 Bacteria 3317
157 Ga0496102_0010531 3300048905 Bacteria 7962
158 Ga0496102_0041791 3300048905 Bacteria 4154
159 Ga0496102_0073466 3300048905 Bacteria 3143
160 Ga0496103_0035790 3300048906 Bacteria 3039
161 Ga0496104_0002362 3300048907 Bacteria 16313
162 Ga0496105_0001993 3300048908 Bacteria 14718
163 Ga0496105_0013628 3300048908 Bacteria 6454
164 Ga0496106_0023222 3300048909 Bacteria 4607
165 Ga0496108_0000436 3300048911 Bacteria 33627
166 Ga0496109_0002318 3300048912 Bacteria 15851
167 Ga0496110_0033331 3300048913 Bacteria 4454
168 Ga0496110_0038441 3300048913 Bacteria 4165
169 Ga0496112_0000735 3300048915 Bacteria 22831
170 Ga0496112_0026427 3300048915 Bacteria 5585
171 Ga0496112_0067725 3300048915 Bacteria 3524
172 Ga0496116_0033635 3300048919 Bacteria 3634
173 Ga0496117_0005904 3300048920 Bacteria 12646
174 Ga0496118_0036676 3300048921 Bacteria 3959
175 Ga0496121_0001605 3300048924 Bacteria 37523
176 Ga0496121_0003916 3300048924 Bacteria 20651
177 Ga0496121_0005166 3300048924 Bacteria 16947
178 Ga0496121_0083160 3300048924 Bacteria 2528
179 Ga0496123_0014238 3300048926 Bacteria 6609
180 Ga0496123_0028910 3300048926 Bacteria 4092
181 Ga0496124_0089191 3300048927 Bacteria 2518
182 Ga0496125_0027576 3300048928 Bacteria 5147
183 Ga0501032_0000251 3300049569 Bacteria 44685
184 Ga0501032_0042080 3300049569 Bacteria 3100
185 Ga0501034_0114560 3300049571 Bacteria 2684
186 Ga0501037_0053362 3300049573 Bacteria 2957
187 Ga0501038_0023394 3300049574 Bacteria 5524
188 Ga0501042_0009781 3300049578 Bacteria 6407
189 Ga0501043_0009846 3300049579 Bacteria 7494
190 Ga0501046_0019426 3300049580 Bacteria 5638
191 Ga0501047_0013267 3300049581 Bacteria 7806
192 Ga0501048_0061762 3300049582 Bacteria 2652
193 Ga0501067_0001417 3300049583 Bacteria 12996
194 Ga0501067_0006426 3300049583 Bacteria 6511
195 Ga0501067_0045732 3300049583 Bacteria 2430
196 Ga0501068_0008177 3300049584 Bacteria 5813
197 Ga0501070_0057851 3300049586 Bacteria 3215
198 Ga0501072_0035553 3300049588 Bacteria 3902
199 Ga0501073_0000438 3300049589 Bacteria 28698
200 Ga0501073_0045088 3300049589 Bacteria 3106
201 Ga0501074_0013185 3300049590 Bacteria 6010
202 Ga0501076_0094621 3300049592 Bacteria 2405
203 Ga0501077_0000013 3300049593 Bacteria 91207
204 Ga0501080_0001935 3300049742 Bacteria 17882
205 Ga0501080_0001959 3300049742 Bacteria 17767
206 Ga0501083_0008140 3300049744 Bacteria 7418
207 Ga0501083_0009075 3300049744 Bacteria 7022
208 Ga0501083_0093508 3300049744 Bacteria 1985
209 Ga0501044_0015906 3300049823 Bacteria 8097
210 Ga0501044_0077589 3300049823 Bacteria 3369
211 Ga0501045_0013200 3300049824 Bacteria 5826
212 nmdc:mga00v17_199_c1 3300050491 Bacteria 8278
213 nmdc:mga0yw44_17137_c1 3300050492 Bacteria 3934
214 nmdc:mga0k408_22118_c1 3300050493 Bacteria 3579
215 nmdc:mga07m45_40644_c1 3300050496 Bacteria 2602
216 nmdc:mga05p37_19919_c1 3300050507 Bacteria 8115
217 nmdc:mga05p37_3298_c1 3300050507 Bacteria 18825
218 nmdc:mga05p37_5756_c1 3300050507 Bacteria 14582
219 nmdc:mga05p37_64127_c1 3300050507 Bacteria 4521
220 nmdc:mga0qj67_12713_c1 3300050509 Bacteria 6348
221 nmdc:mga06r32_103719_c1 3300050510 Bacteria 2792
222 nmdc:mga06r32_56469_c1 3300050510 Bacteria 3769
223 nmdc:mga06r32_64_c1 3300050510 Bacteria 67984
224 nmdc:mga08y16_5017_c1 3300050511 Bacteria 13840
225 nmdc:mga0n895_61803_c1 3300050512 Bacteria 3699
226 Ga0495601_0016410 3300053077 Bacteria 4487
227 Ga0495601_0024313 3300053077 Bacteria 3731
228 Ga0495601_0065518 3300053077 Bacteria 2312
229 Ga0500556_0000208 3300053104 Bacteria 48224
230 Ga0500595_002683 3300053119 Bacteria 8652
231 Ga0500595_006970 3300053119 Bacteria 4740
232 Ga0500564_005158 3300053138 Bacteria 5317
233 Ga0500616_0000166 3300053153 Bacteria 110141
234 Ga0500616_0000277 3300053153 Bacteria 76399
235 Ga0500636_0000021 3300053177 Bacteria 96861
236 2509148865 2508501128 Bacteria 8613869
237 2510840709 2510461069 Bacteria 5505000
238 2513861030 2513237137 Bacteria 9558895
239 2517894732 2517572143 Bacteria 9484767
240 2561468391 2558860983 Bacteria 4133860
241 2585283271 2582581308 Bacteria 7413247
242 2585534681 2585427527 Bacteria 7273426
243 2585556581 2585427530 Bacteria 7383882
244 2585996185 2585427633 Bacteria 6413184
245 2586000795 2585427634 Bacteria 6455027
246 2599721934 2599185236 Bacteria 6875203
247 2600374379 2600254933 Bacteria 4750527
248 2616312373 2615840626 Bacteria 7921970
249 2643755183 2643221547 Bacteria 4740017
250 2644287359 2643221651 Bacteria 4798932
251 2644298650 2643221653 Bacteria 4569637
252 2671119147 2667528175 Bacteria 7532676
253 2776913903 2775507049 Bacteria 6284736
254 2819642109 2818991453 Bacteria 7181617
255 2824624664 2824617872 Bacteria 8814715
256 2824633301 2824626560 Bacteria 8813858
257 2824640653 2824635225 Bacteria 8785348
258 2824650604 2824644064 Bacteria 8743947
259 2824710919 2824704595 Bacteria 9667483
260 2824723231 2824714736 Bacteria 8717648
261 2824732562 2824723954 Bacteria 8758240
262 2899807289 2899803654 Bacteria 5577784
263 2903751416 2903748898 Bacteria 9972761
264 2904697717 2904690495 Bacteria 9412302
265 2906611453
266 2906640979 2906635258 Bacteria 8601019
267 2906660812 2906660503 Bacteria 8595048
268 2908745045 2908739725 Bacteria 8628932
269 2908757187 2908756301 Bacteria 8864324
270 2919174729 2919171160 Bacteria 6499771
271 2922427904
272 2932798304 2932794094 Bacteria 7915132
273 2935632168 2935630451 Bacteria 8169952
274 2941508116 2941507105 Bacteria 8166816
275 2941515379 2941515067 Bacteria 8166720
276 2941524046 2941523033 Bacteria 8169134
277 3005477614 3005474847 Bacteria 9259049
278 8005659051 8005658619 Bacteria 4500593
279 8006997827 8006994254 Bacteria 8309700
280 8019559539 8019555841 Bacteria 9642137
281 8054462953 8054460903 Bacteria 4872905
282 8055432784 8055431914 Bacteria 4551896
283 8056695161 8056689827 Bacteria 6712655
284 Ga0501047_0005236
285 JGI24032J14994_100276
286 JGI24738J21930_10000476
287 JGI25406J46586_10000789
288 rootH1_10004152
289 JGI25405J52794_10002022
290 Ga0070683_100061878
291 Ga0068868_100028682
292 Ga0070660_100026427
293 Ga0070689_100034535
294 Ga0070687_100005428
295 Ga0070668_100038866
296 Ga0070675_100008363
297 Ga0070675_100009040
298 Ga0070674_100019046
299 Ga0070673_100003153
300 Ga0070659_100048052
301 Ga0070667_100020583
302 Ga0070709_10023542
303 Ga0070714_100019922
304 Ga0070714_100019993
305 Ga0070713_100123769
306 Ga0070710_10013728
307 Ga0070710_10026494
308 Ga0070700_100032693
309 Ga0070663_100050747
310 Ga0070681_10043618
311 Ga0070685_10000716
312 Ga0070685_10004323
313 Ga0070699_100003612
314 Ga0070684_100072858
315 Ga0070704_100035497
316 Ga0068856_100051758
317 Ga0068864_100012215
318 Ga0068851_10027066
319 Ga0068863_100005905
320 Ga0081455_10002655
321 Ga0081455_10003627
322 Ga0081455_10034406
323 Ga0081538_10006048
324 Ga0081540_1001402
325 Ga0081540_1022006
326 Ga0081540_1027023
327 Ga0081539_10015699
328 Ga0075364_10027386
329 Ga0070716_100004389
330 Ga0070712_100034208
331 Ga0075366_10033230
332 Ga0075370_10035096
333 Ga0068871_100040129
334 Ga0075428_100007340
335 Ga0075430_100022855
336 Ga0075431_100000266
337 Ga0099826_10000198
338 Ga0099794_10001492
339 Ga0105240_10000440
340 Ga0111539_10000429
341 Ga0111539_10046510
342 Ga0105245_10033240
343 Ga0105247_10010984
344 Ga0114129_10000640
345 Ga0114129_10002372
346 Ga0114129_10011306
347 Ga0105237_10001024
348 Ga0105239_10043648
349 Ga0105239_10093821
350 Ga0105239_10126445
351 Ga0157370_10001822
352 Ga0157369_10020599
353 Ga0157375_10029565
354 Ga0163163_10005926
355 Ga0157379_10014665
356 Ga0182007_10006036
357 Ga0213875_10026713
358 Ga0228598_1006786
359 Ga0209677_100189
360 Ga0209233_1000139
361 Ga0209233_1006066
362 Ga0207710_10007096
363 Ga0207688_10000165
364 Ga0207680_10039077
365 Ga0207647_10025978
366 Ga0207685_10003399
367 Ga0207707_10003524
368 Ga0207695_10000180
369 Ga0207671_10000132
370 Ga0207671_10040940
371 Ga0207693_10002094
372 Ga0207693_10059375
373 Ga0207660_10002555
374 Ga0207662_10002660
375 Ga0207662_10047836
376 Ga0207657_10008360
377 Ga0207657_10026386
378 Ga0207650_10001504
379 Ga0207687_10050098
380 Ga0207700_10003542
381 Ga0207664_10006908
382 Ga0207706_10027026
383 Ga0207709_10013180
384 Ga0207670_10035914
385 Ga0207665_10002852
386 Ga0207665_10078431
387 Ga0207691_10000482
388 Ga0207689_10005787
389 Ga0207661_10058417
390 Ga0207679_10015382
391 Ga0207667_10020434
392 Ga0207667_10060672
393 Ga0207651_10046480
394 Ga0207712_10010573
395 Ga0207677_10002263
396 Ga0207639_10019991
397 Ga0207678_10007284
398 Ga0207708_10001645
399 Ga0207674_10098558
400 Ga0207675_100001173
401 Ga0207428_10011466
402 Ga0268266_10048439
403 Ga0265332_10001080
404 Ga0265339_10012242
405 Ga0265327_10000257
406 Ga0307408_100001572
407 Ga0265342_10000085
408 Ga0316574_0013196
409 Ga0373927_0000955
410 Ga0373927_0015179
411 Ga0373933_0000697
412 Ga0373947_0013259
413 Ga0316584_0035929
414 Ga0373925_0002490
415 Ga0395900_0006068
416 Ga0395898_0034749
417 Ga0436364_0834412
418 Ga0395901_0017267
419 Ga0436365_1253568
420 Ga0436361_1200524
421 Ga0439456_000003
422 Ga0466958_0042138
423 Ga0466967_0001568
424 Ga0466967_0073811
425 Ga0495603_0020344
426 Ga0495638_0030534
427 Ga0495651_0025972
428 Ga0495582_0004923
429 Ga0495644_0013349
430 Ga0495598_0002562
431 Ga0495597_0000006
432 Ga0495634_0010860
433 Ga0495634_0015567
434 Ga0495634_0047617
435 Ga0495581_0011829
436 Ga0495674_0007252
437 Ga0495684_0005151
438 Ga0495686_0000025
439 Ga0496100_0031065
440 Ga0496102_0010531
441 Ga0496102_0041791
442 Ga0496102_0073466
443 Ga0496103_0035790
444 Ga0496104_0002362
445 Ga0496105_0001993
446 Ga0496105_0013628
447 Ga0496106_0023222
448 Ga0496108_0000436
449 Ga0496109_0002318
450 Ga0496110_0033331
451 Ga0496110_0038441
452 Ga0496112_0000735
453 Ga0496112_0026427
454 Ga0496112_0067725
455 Ga0496116_0033635
456 Ga0496117_0005904
457 Ga0496118_0036676
458 Ga0496121_0001605
459 Ga0496121_0003916
460 Ga0496121_0005166
461 Ga0496121_0083160
462 Ga0496123_0014238
463 Ga0496123_0028910
464 Ga0496124_0089191
465 Ga0496125_0027576
466 Ga0501032_0000251
467 Ga0501032_0042080
468 Ga0501034_0114560
469 Ga0501037_0053362
470 Ga0501038_0023394
471 Ga0501042_0009781
472 Ga0501043_0009846
473 Ga0501046_0019426
474 Ga0501047_0013267
475 Ga0501048_0061762
476 Ga0501067_0001417
477 Ga0501067_0006426
478 Ga0501067_0045732
479 Ga0501068_0008177
480 Ga0501070_0057851
481 Ga0501072_0035553
482 Ga0501073_0000438
483 Ga0501073_0045088
484 Ga0501074_0013185
485 Ga0501076_0094621
486 Ga0501077_0000013
487 Ga0501080_0001935
488 Ga0501080_0001959
489 Ga0501083_0008140
490 Ga0501083_0009075
491 Ga0501083_0093508
492 Ga0501044_0015906
493 Ga0501044_0077589
494 Ga0501045_0013200
495 nmdc:mga00v17_199_c1
496 nmdc:mga0yw44_17137_c1
497 nmdc:mga0k408_22118_c1
498 nmdc:mga07m45_40644_c1
499 nmdc:mga05p37_19919_c1
500 nmdc:mga05p37_3298_c1
501 nmdc:mga05p37_5756_c1
502 nmdc:mga05p37_64127_c1
503 nmdc:mga0qj67_12713_c1
504 nmdc:mga06r32_103719_c1
505 nmdc:mga06r32_56469_c1
506 nmdc:mga06r32_64_c1
507 nmdc:mga08y16_5017_c1
508 nmdc:mga0n895_61803_c1
509 Ga0495601_0016410
510 Ga0495601_0024313
511 Ga0495601_0065518
512 Ga0500556_0000208
513 Ga0500595_002683
514 Ga0500595_006970
515 Ga0500564_005158
516 Ga0500616_0000166
517 Ga0500616_0000277
518 Ga0500636_0000021
519 2509148865
520 2510840709
521 2513861030
522 2517894732
523 2561468391
524 2585283271
525 2585534681
526 2585556581
527 2585996185
528 2586000795
529 2599721934
530 2600374379
531 2616312373
532 2643755183
533 2644287359
534 2644298650
535 2671119147
536 2776913903
537 2819642109
538 2824624664
539 2824633301
540 2824640653
541 2824650604
542 2824710919
543 2824723231
544 2824732562
545 2899807289
546 2903751416
547 2904697717
548 2906611453
549 2906640979
550 2906660812
551 2908745045
552 2908757187
553 2919174729
554 2922427904
555 2932798304
556 2935632168
557 2941508116
558 2941515379
559 2941524046
560 3005477614
561 8005659051
562 8006997827
563 8019559539
564 8054462953
565 8055432784
566 8056695161

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03120

DNA_ligase_OB

NAD-dependent DNA ligase OB-fold domain

334

412

0.98

PF01653

DNA_ligase_aden

NAD-dependent DNA ligase adenylation domain

74

331

0.96

PF03119

DNA_ligase_ZBD

NAD-dependent DNA ligase C4 zinc finger domain

420

451

0.95

PF00533

BRCT

BRCA1 C Terminus (BRCT) domain

714

790

0.94

PF12826

HHH_2

Helix-hairpin-helix motif

534

572

0.93

PF12738

PTCB-BRCT

twin BRCT domain

723

784

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
3bac-assembly1.cif.gz_A-2 structural basis for the inhibition of bacterial nad+ dependent dna ligase 0.9192 66 315
3bac-assembly1.cif.gz_A-2 structural basis for the inhibition of bacterial nad+ dependent dna ligase 0.8981 66 315
4glw-assembly1.cif.gz_A dna ligase a in complex with inhibitor 0.8469 20 314
4glw-assembly1.cif.gz_A dna ligase a in complex with inhibitor 0.8409 20 314
3jsn-assembly1.cif.gz_A crystal structure of the adenylation domain of nad+-dependent dna ligase from staphylococcus aureus 0.8378 21 312
ID Description Score Start End Superfamily
4glwB01 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.9592 70 299 3.30.470.30
4cc5A02 Alpha Beta;2-Layer Sandwich;Dna Ligase; domain 1; 0.951 77 313 3.30.1490.70
1zauA02 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.9498 66 313 3.30.470.30
2owoA03 Alpha Beta;2-Layer Sandwich;Dna Ligase; domain 1; 0.9471 74 313 3.30.1490.70
4glwB01 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.9466 70 299 3.30.470.30
ID Description Score Start End GO Terms
AF-A0A529UDK6-F1-model_v4 deleted 0.992 121 308
AF-A0A358HP82-F1-model_v4 DNA ligase (NAD(+)) LigA 0.9893 111 230 GO:0003911
GO:0006281
AF-A0A529UDK6-F1-model_v4 deleted 0.9868 121 308
AF-A0A7K1IP74-F1-model_v4 deleted 0.9853 161 277
AF-A0A540WI88-F1-model_v4 NAD-dependent DNA ligase LigA (EC 6.5.1.2) 0.9839 128 259 GO:0003911

Map