F382875

General Info

Members Datasets Scaffolds Average Seq Length
279 213 558 214

Family's Representative Sequence

Representative Sequence 3300005365|Ga0070688_100015154|Ga0070688_1000151544
Length 253
Sequence MIYDERIISGHCLKVHCTKGQVGNDVELGGWTADYSLEVKRTALSGLVYVVDDDASFRSAVERRLKLAGYDVVLNASAQQLLEQLPGTIGRSCILLDVRIPGLSGPELQTRLGELGSMLPIVFLTGYADTATTVRTIKAGAEDFLTKPVSSEQLIDAIERAMARHETSLSQRHKLDALRELLATLTPRERQVFELMVRGKINKQIAHELGTTERTIKAHRHQVMEKTRVNSLAELVSLAERLGLLDPDGRTDR

Samples

Sample ID Description Type Environment
1 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
4 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
5 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
6 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
7 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
13 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
19 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
20 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
21 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
22 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
23 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
24 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
25 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
26 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
27 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
28 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
29 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
30 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
31 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
32 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
33 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
34 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
35 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
38 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
39 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
40 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
41 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
42 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
43 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
44 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
45 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
46 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
47 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
48 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
49 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
50 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
51 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
52 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
53 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
54 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
55 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
57 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
58 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
59 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
60 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
61 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
62 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
63 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
64 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
65 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
66 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
67 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
68 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
69 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
70 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
71 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
73 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
75 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
76 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
113 3300027357 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) Metagenome Nodule
114 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
115 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
118 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
119 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
120 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
121 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
122 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
123 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
124 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
125 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
126 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
127 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
128 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
129 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
130 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
131 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
132 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
133 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
134 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
135 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
136 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
137 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
138 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
139 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
140 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
141 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
142 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
143 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
144 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
145 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
146 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
147 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
148 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
149 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
150 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
151 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
152 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
153 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
154 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
155 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
156 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
157 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
158 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
159 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
160 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
161 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
162 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
163 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
164 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
165 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
166 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
167 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
168 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
169 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
170 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
171 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
172 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
173 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
174 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
175 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
176 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
177 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
178 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
179 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
180 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
181 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
182 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
183 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
184 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
185 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
186 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
187 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
188 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
189 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
190 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
191 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
192 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
193 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
194 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
195 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
196 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
197 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
198 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
199 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
200 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
201 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
202 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
203 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
204 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
205 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
206 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
207 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
208 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
209 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
210 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
211 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere
212 2508501128 Bradyrhizobium sp. ARR65 Isolate Nodule
213 2513237141 Bradyrhizobium sp. TV2a.2 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 99.28
Metatranscriptomes 0
Isolates 0.72

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.53
Nodule 2.15
Rhizoplane 1.43
Rhizosphere 83.15
Stem 0
Stem Tuber 0
Unclassified 5.02

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070688_100015154 3300005365 Bacteria 4379
2 rootL2_10215865 3300003322 Bacteria 2102
3 JGI25404J52841_10005447 3300003659 Bacteria 2631
4 JGI25404J52841_10036762 3300003659 Bacteria 1042
5 Ga0055542_1008594 3300003762 Bacteria 1988
6 Ga0055529_1008578 3300003763 Bacteria 1358
7 Ga0065165_1002403 3300005262 Bacteria 15976
8 Ga0065712_10025552 3300005290 Unclassified 1200
9 Ga0070658_10009703 3300005327 Bacteria 7729
10 Ga0070658_10716441 3300005327 Bacteria 869
11 Ga0070670_100491554 3300005331 Unclassified 1090
12 Ga0070666_10075069 3300005335 Bacteria 2305
13 Ga0070689_100148914 3300005340 Bacteria 1887
14 Ga0070692_10288795 3300005345 Bacteria 997
15 Ga0070669_100161257 3300005353 Unclassified 1742
16 Ga0070671_100119113 3300005355 Bacteria 2221
17 Ga0070674_100003512 3300005356 Bacteria 8802
18 Ga0070688_100271274 3300005365 Bacteria 1215
19 Ga0070659_100233568 3300005366 Bacteria 1520
20 Ga0070659_100297256 3300005366 Unclassified 1346
21 Ga0070667_100470812 3300005367 Unclassified 1149
22 Ga0070667_100867733 3300005367 Bacteria 839
23 Ga0070714_100130982 3300005435 Bacteria 2241
24 Ga0070713_100318323 3300005436 Bacteria 1436
25 Ga0070710_10026899 3300005437 Bacteria 3063
26 Ga0070701_10169162 3300005438 Bacteria 1271
27 Ga0070711_100034711 3300005439 Bacteria 3366
28 Ga0070700_100691674 3300005441 Unclassified 810
29 Ga0070678_100081480 3300005456 Bacteria 2453
30 Ga0068867_100298241 3300005459 Unclassified 1328
31 Ga0070684_100015956 3300005535 Bacteria 6133
32 Ga0068853_100074190 3300005539 Bacteria 2968
33 Ga0070672_100039528 3300005543 Bacteria 3614
34 Ga0070686_100047540 3300005544 Bacteria 2713
35 Ga0070664_100513775 3300005564 Bacteria 1105
36 Ga0068857_100349417 3300005577 Bacteria 1369
37 Ga0068856_100981922 3300005614 Bacteria 863
38 Ga0068852_100520719 3300005616 Bacteria 1186
39 Ga0068859_100036334 3300005617 Bacteria 4945
40 Ga0068859_100465870 3300005617 Bacteria 1359
41 Ga0068864_100810347 3300005618 Unclassified 921
42 Ga0068863_100120451 3300005841 Bacteria 2502
43 Ga0068863_100245628 3300005841 Bacteria 1728
44 Ga0068858_100092541 3300005842 Bacteria 2814
45 Ga0068858_100152503 3300005842 Bacteria 2173
46 Ga0068860_100073422 3300005843 Bacteria 3252
47 Ga0068860_100235567 3300005843 Bacteria 1779
48 Ga0068862_100025207 3300005844 Bacteria 4992
49 Ga0081455_10081263 3300005937 Bacteria 2654
50 Ga0081540_1005651 3300005983 Bacteria 9301
51 Ga0070717_10000579 3300006028 Bacteria 23331
52 Ga0070717_10390430 3300006028 Bacteria 1249
53 Ga0070716_100145603 3300006173 Bacteria 1517
54 Ga0070712_100374243 3300006175 Bacteria 1171
55 Ga0070712_100457563 3300006175 Bacteria 1064
56 Ga0075369_10108129 3300006186 Bacteria 1252
57 Ga0075366_10358067 3300006195 Bacteria 896
58 Ga0068871_100085334 3300006358 Bacteria 2622
59 Ga0075433_10065356 3300006852 Bacteria 3191
60 Ga0075434_100040078 3300006871 Bacteria 4640
61 Ga0075436_100135292 3300006914 Bacteria 1730
62 Ga0097620_100036335 3300006931 Bacteria 4945
63 Ga0097620_100465909 3300006931 Bacteria 1359
64 Ga0099824_1022997 3300006942 Bacteria 3968
65 Ga0099795_10008744 3300007788 Bacteria 2905
66 Ga0105240_10016198 3300009093 Bacteria 10102
67 Ga0105240_10172539 3300009093 Bacteria 2560
68 Ga0105240_11147512 3300009093 Unclassified 825
69 Ga0111539_10920413 3300009094 Bacteria 1017
70 Ga0105247_10040208 3300009101 Bacteria 2858
71 Ga0105247_10057918 3300009101 Bacteria 2396
72 Ga0105247_10403460 3300009101 Bacteria 975
73 Ga0105248_10025048 3300009177 Bacteria 6632
74 Ga0105237_10002179 3300009545 Bacteria 24557
75 Ga0105237_10037228 3300009545 Bacteria 4919
76 Ga0105237_10122977 3300009545 Bacteria 2589
77 Ga0105238_10044324 3300009551 Bacteria 4497
78 Ga0105238_10318843 3300009551 Bacteria 1540
79 Ga0105239_10058136 3300010375 Bacteria 4243
80 Ga0105239_10083613 3300010375 Bacteria 3515
81 Ga0105246_10168194 3300011119 Bacteria 1676
82 Ga0157370_10001125 3300013104 Bacteria 33417
83 Ga0157378_10069253 3300013297 Bacteria 3165
84 Ga0163162_10059636 3300013306 Bacteria 3848
85 Ga0157375_10063965 3300013308 Bacteria 3662
86 Ga0157379_10061567 3300014968 Bacteria 3356
87 Ga0157376_10063182 3300014969 Bacteria 3118
88 Ga0157376_10466403 3300014969 Bacteria 1235
89 Ga0163161_10060036 3300017792 Bacteria 2767
90 Ga0163161_10398759 3300017792 Bacteria 1103
91 Ga0213873_10000496 3300021358 Bacteria 6334
92 Ga0213876_10001337 3300021384 Bacteria 15450
93 Ga0209148_1000274 3300025254 Bacteria 81201
94 Ga0209233_1017957 3300025261 Bacteria 1915
95 Ga0209455_1003270 3300025272 Bacteria 5830
96 Ga0209758_1000881 3300025297 Bacteria 41200
97 Ga0207426_1004044 3300025302 Bacteria 7423
98 Ga0207710_10057878 3300025900 Bacteria 1752
99 Ga0207710_10059244 3300025900 Bacteria 1733
100 Ga0207710_10115187 3300025900 Bacteria 1279
101 Ga0207680_10113912 3300025903 Bacteria 1759
102 Ga0207699_10019697 3300025906 Bacteria 3603
103 Ga0207705_10005858 3300025909 Bacteria 9147
104 Ga0207695_10000015 3300025913 Bacteria 803205
105 Ga0207671_10006009 3300025914 Bacteria 10973
106 Ga0207671_10043237 3300025914 Bacteria 3331
107 Ga0207671_10081238 3300025914 Bacteria 2431
108 Ga0207671_10259125 3300025914 Bacteria 1368
109 Ga0207693_10310479 3300025915 Bacteria 1235
110 Ga0207693_10387336 3300025915 Bacteria 1093
111 Ga0207663_10222270 3300025916 Bacteria 1375
112 Ga0207681_10283439 3300025923 Bacteria 1305
113 Ga0207694_10027950 3300025924 Bacteria 4299
114 Ga0207694_10172358 3300025924 Bacteria 1752
115 Ga0207650_10237514 3300025925 Unclassified 1472
116 Ga0207700_10010055 3300025928 Bacteria 5947
117 Ga0207700_10010105 3300025928 Bacteria 5934
118 Ga0207644_10053168 3300025931 Bacteria 2914
119 Ga0207690_10423804 3300025932 Bacteria 1065
120 Ga0207706_10141356 3300025933 Bacteria 2118
121 Ga0207706_10312509 3300025933 Bacteria 1368
122 Ga0207686_10109046 3300025934 Bacteria 1863
123 Ga0207670_10098055 3300025936 Bacteria 2088
124 Ga0207669_10004498 3300025937 Bacteria 6148
125 Ga0207665_10095163 3300025939 Bacteria 2070
126 Ga0207665_10281011 3300025939 Bacteria 1239
127 Ga0207691_10007151 3300025940 Bacteria 10768
128 Ga0207711_10031951 3300025941 Bacteria 4448
129 Ga0207689_10001027 3300025942 Bacteria 26845
130 Ga0207661_10001512 3300025944 Bacteria 15769
131 Ga0207651_10295815 3300025960 Bacteria 1344
132 Ga0207712_10443994 3300025961 Bacteria 1099
133 Ga0207640_10298925 3300025981 Bacteria 1273
134 Ga0207658_10808598 3300025986 Bacteria 851
135 Ga0207677_10086792 3300026023 Bacteria 2263
136 Ga0207677_10395033 3300026023 Unclassified 1171
137 Ga0207677_10550198 3300026023 Bacteria 1006
138 Ga0207677_10592632 3300026023 Bacteria 972
139 Ga0207703_10172345 3300026035 Bacteria 1904
140 Ga0207678_10482875 3300026067 Bacteria 1079
141 Ga0207708_10490434 3300026075 Unclassified 1028
142 Ga0207702_10272952 3300026078 Bacteria 1596
143 Ga0207641_10422210 3300026088 Bacteria 1284
144 Ga0207648_10130412 3300026089 Bacteria 2213
145 Ga0207683_10076819 3300026121 Bacteria 2957
146 Ga0207698_10044016 3300026142 Bacteria 3350
147 Ga0207698_10139835 3300026142 Bacteria 2084
148 Ga0207698_10161886 3300026142 Bacteria 1958
149 Ga0209389_1000075 3300027296 Bacteria 92887
150 Ga0209589_1000085 3300027357 Bacteria 92543
151 Ga0209489_100062 3300027361 Bacteria 145478
152 Ga0209179_1048657 3300027512 Bacteria 905
153 Ga0268265_10018106 3300028380 Bacteria 4876
154 Ga0307510_10212799 3300033180 Bacteria 1453
155 Ga0373934_0032923 3300035086 Bacteria 2035
156 Ga0373944_0029660 3300035089 Bacteria 1637
157 Ga0373945_0005834 3300035116 Bacteria 3953
158 Ga0373953_0121651 3300035117 Bacteria 1109
159 Ga0373953_0239729 3300035117 Bacteria 787
160 Ga0373954_0032867 3300035118 Bacteria 2400
161 Ga0373956_0158824 3300035119 Bacteria 1065
162 Ga0373957_0128197 3300035120 Bacteria 1031
163 Ga0373946_0043693 3300035171 Bacteria 1847
164 Ga0373946_0059657 3300035171 Bacteria 1620
165 Ga0373955_0079067 3300035172 Bacteria 1854
166 Ga0373955_0214455 3300035172 Bacteria 1148
167 Ga0373924_0050165 3300035410 Bacteria 1728
168 Ga0373931_0486894 3300035691 Bacteria 794
169 Ga0373935_0007120 3300035692 Bacteria 6679
170 Ga0373935_0338647 3300035692 Bacteria 1070
171 Ga0373927_0029069 3300035695 Bacteria 3602
172 Ga0373927_0036721 3300035695 Bacteria 3185
173 Ga0373933_0107437 3300035724 Bacteria 1737
174 Ga0373947_0009796 3300035725 Bacteria 5498
175 Ga0373937_0048348 3300036401 Bacteria 3894
176 Ga0373925_0225354 3300037068 Bacteria 1497
177 Ga0436365_1845823 3300039437 Bacteria 28721
178 Ga0436362_0274598 3300039453 Bacteria 16081
179 Ga0466967_0091374 3300045976 Bacteria 2767
180 Ga0466967_0333808 3300045976 Bacteria 1464
181 Ga0495592_0060485 3300046454 Bacteria 2786
182 Ga0495603_0011786 3300046455 Bacteria 5292
183 Ga0495629_0037485 3300046459 Bacteria 3417
184 Ga0495641_0025606 3300046461 Bacteria 2894
185 Ga0495653_0596073 3300046463 Bacteria 680
186 Ga0495580_0026250 3300046472 Bacteria 4249
187 Ga0495580_0345819 3300046472 Bacteria 1008
188 Ga0495582_0001520 3300046473 Bacteria 13079
189 Ga0495639_0003605 3300046475 Bacteria 6679
190 Ga0495639_0170825 3300046475 Bacteria 1055
191 Ga0495662_0001699 3300046476 Bacteria 10997
192 Ga0495594_0011646 3300046499 Bacteria 4572
193 Ga0495594_0372622 3300046499 Bacteria 813
194 Ga0495606_0082817 3300046507 Bacteria 1991
195 Ga0495610_0107172 3300046512 Bacteria 1243
196 Ga0495620_0066406 3300046515 Bacteria 1486
197 Ga0495630_0016914 3300046517 Bacteria 5337
198 Ga0495630_0107371 3300046517 Bacteria 2114
199 Ga0495648_0009975 3300046524 Bacteria 7287
200 Ga0495652_0057372 3300046529 Bacteria 3302
201 Ga0495652_0226357 3300046529 Bacteria 1402
202 Ga0495665_0003411 3300046531 Bacteria 8627
203 Ga0495665_0131252 3300046531 Bacteria 1311
204 Ga0495640_0008977 3300046533 Bacteria 7807
205 Ga0495640_0101704 3300046533 Bacteria 1886
206 Ga0495587_0335880 3300046536 Bacteria 843
207 Ga0495598_0014631 3300046537 Bacteria 1965
208 Ga0495621_0002522 3300046539 Bacteria 4938
209 Ga0495622_0042885 3300046557 Bacteria 2103
210 Ga0495656_0032898 3300046615 Bacteria 2113
211 Ga0495634_0002719 3300046642 Bacteria 14550
212 Ga0495634_0114070 3300046642 Bacteria 1735
213 Ga0495625_0234631 3300046660 Bacteria 1197
214 Ga0495635_0012006 3300046663 Bacteria 6071
215 Ga0495588_0276646 3300046674 Bacteria 884
216 Ga0495657_0222747 3300046675 Bacteria 1143
217 Ga0495623_0193976 3300046679 Bacteria 1172
218 Ga0495646_0113478 3300046680 Bacteria 1541
219 Ga0495647_0010289 3300046681 Bacteria 3183
220 Ga0495658_0007887 3300046683 Bacteria 5270
221 Ga0495613_0029019 3300046689 Bacteria 4114
222 Ga0495613_0109396 3300046689 Bacteria 1993
223 Ga0495624_0162801 3300046690 Bacteria 1362
224 Ga0495624_0328631 3300046690 Bacteria 920
225 Ga0495581_0003908 3300047315 Bacteria 8574
226 Ga0495581_0073622 3300047315 Bacteria 1977
227 Ga0495674_0026239 3300047319 Bacteria 5333
228 Ga0495676_0034893 3300047321 Bacteria 4215
229 Ga0495676_0571221 3300047321 Bacteria 738
230 Ga0495680_0146862 3300047322 Bacteria 1722
231 Ga0495677_0172651 3300047445 Bacteria 837
232 Ga0495673_0030966 3300047469 Bacteria 2508
233 Ga0495673_0200884 3300047469 Bacteria 746
234 Ga0495684_0036706 3300047471 Bacteria 3757
235 Ga0495684_0248020 3300047471 Bacteria 1296
236 Ga0495593_0005448 3300047673 Bacteria 7519
237 Ga0495593_0089650 3300047673 Bacteria 1584
238 Ga0495615_0052757 3300048090 Unclassified 1051
239 Ga0496100_0329517 3300048903 Bacteria 1149
240 Ga0496108_0162570 3300048911 Bacteria 1930
241 Ga0496108_0741234 3300048911 Bacteria 850
242 Ga0496112_0200509 3300048915 Unclassified 1955
243 Ga0496118_0550586 3300048921 Bacteria 563
244 Ga0496119_0042546 3300048922 Bacteria 2879
245 Ga0496121_0037580 3300048924 Bacteria 4298
246 Ga0496121_0146642 3300048924 Bacteria 1743
247 Ga0496121_0194304 3300048924 Bacteria 1452
248 Ga0496124_0018275 3300048927 Bacteria 6571
249 Ga0496124_0024140 3300048927 Bacteria 5534
250 Ga0496125_0027741 3300048928 Bacteria 5125
251 Ga0496125_0062436 3300048928 Bacteria 2979
252 Ga0496125_0387271 3300048928 Bacteria 822
253 Ga0496126_0041765 3300048929 Bacteria 4241
254 Ga0496126_0277613 3300048929 Bacteria 1389
255 Ga0501046_0053650 3300049580 Bacteria 3174
256 Ga0501047_0041477 3300049581 Bacteria 4447
257 Ga0501070_0005562 3300049586 Bacteria 10745
258 Ga0501074_0038185 3300049590 Bacteria 3480
259 Ga0501080_0028356 3300049742 Bacteria 5208
260 Ga0501035_0528040 3300049822 Bacteria 969
261 Ga0501044_0109861 3300049823 Bacteria 2766
262 nmdc:mga0yw44_639979_c1 3300050492 Bacteria 723
263 nmdc:mga07m45_15384_c1 3300050496 Bacteria 4085
264 nmdc:mga08y16_264894_c1 3300050511 Bacteria 1774
265 nmdc:mga0n895_105599_c1 3300050512 Bacteria 2829
266 nmdc:mga0a205_57287_c1 3300050515 Bacteria 3763
267 Ga0495619_0133133 3300053085 Bacteria 1709
268 Ga0495619_0399032 3300053085 Bacteria 950
269 Ga0500644_0137956 3300053088 Bacteria 967
270 Ga0500646_0020450 3300053090 Bacteria 1759
271 Ga0500566_0000094 3300053094 Bacteria 44567
272 Ga0500595_029853 3300053119 Bacteria 1845
273 Ga0500614_004446 3300053123 Bacteria 2960
274 Ga0500655_016371 3300053133 Bacteria 1365
275 Ga0500559_0003665 3300053136 Bacteria 7507
276 Ga0500588_0107316 3300053146 Bacteria 970
277 Ga0500609_014349 3300053731 Bacteria 1073
278 2509146479 2508501128 Bacteria 8613869
279 2513894838 2513237141 Bacteria 8496279
280 Ga0070688_100015154
281 rootL2_10215865
282 JGI25404J52841_10005447
283 JGI25404J52841_10036762
284 Ga0055542_1008594
285 Ga0055529_1008578
286 Ga0065165_1002403
287 Ga0065712_10025552
288 Ga0070658_10009703
289 Ga0070658_10716441
290 Ga0070670_100491554
291 Ga0070666_10075069
292 Ga0070689_100148914
293 Ga0070692_10288795
294 Ga0070669_100161257
295 Ga0070671_100119113
296 Ga0070674_100003512
297 Ga0070688_100271274
298 Ga0070659_100233568
299 Ga0070659_100297256
300 Ga0070667_100470812
301 Ga0070667_100867733
302 Ga0070714_100130982
303 Ga0070713_100318323
304 Ga0070710_10026899
305 Ga0070701_10169162
306 Ga0070711_100034711
307 Ga0070700_100691674
308 Ga0070678_100081480
309 Ga0068867_100298241
310 Ga0070684_100015956
311 Ga0068853_100074190
312 Ga0070672_100039528
313 Ga0070686_100047540
314 Ga0070664_100513775
315 Ga0068857_100349417
316 Ga0068856_100981922
317 Ga0068852_100520719
318 Ga0068859_100036334
319 Ga0068859_100465870
320 Ga0068864_100810347
321 Ga0068863_100120451
322 Ga0068863_100245628
323 Ga0068858_100092541
324 Ga0068858_100152503
325 Ga0068860_100073422
326 Ga0068860_100235567
327 Ga0068862_100025207
328 Ga0081455_10081263
329 Ga0081540_1005651
330 Ga0070717_10000579
331 Ga0070717_10390430
332 Ga0070716_100145603
333 Ga0070712_100374243
334 Ga0070712_100457563
335 Ga0075369_10108129
336 Ga0075366_10358067
337 Ga0068871_100085334
338 Ga0075433_10065356
339 Ga0075434_100040078
340 Ga0075436_100135292
341 Ga0097620_100036335
342 Ga0097620_100465909
343 Ga0099824_1022997
344 Ga0099795_10008744
345 Ga0105240_10016198
346 Ga0105240_10172539
347 Ga0105240_11147512
348 Ga0111539_10920413
349 Ga0105247_10040208
350 Ga0105247_10057918
351 Ga0105247_10403460
352 Ga0105248_10025048
353 Ga0105237_10002179
354 Ga0105237_10037228
355 Ga0105237_10122977
356 Ga0105238_10044324
357 Ga0105238_10318843
358 Ga0105239_10058136
359 Ga0105239_10083613
360 Ga0105246_10168194
361 Ga0157370_10001125
362 Ga0157378_10069253
363 Ga0163162_10059636
364 Ga0157375_10063965
365 Ga0157379_10061567
366 Ga0157376_10063182
367 Ga0157376_10466403
368 Ga0163161_10060036
369 Ga0163161_10398759
370 Ga0213873_10000496
371 Ga0213876_10001337
372 Ga0209148_1000274
373 Ga0209233_1017957
374 Ga0209455_1003270
375 Ga0209758_1000881
376 Ga0207426_1004044
377 Ga0207710_10057878
378 Ga0207710_10059244
379 Ga0207710_10115187
380 Ga0207680_10113912
381 Ga0207699_10019697
382 Ga0207705_10005858
383 Ga0207695_10000015
384 Ga0207671_10006009
385 Ga0207671_10043237
386 Ga0207671_10081238
387 Ga0207671_10259125
388 Ga0207693_10310479
389 Ga0207693_10387336
390 Ga0207663_10222270
391 Ga0207681_10283439
392 Ga0207694_10027950
393 Ga0207694_10172358
394 Ga0207650_10237514
395 Ga0207700_10010055
396 Ga0207700_10010105
397 Ga0207644_10053168
398 Ga0207690_10423804
399 Ga0207706_10141356
400 Ga0207706_10312509
401 Ga0207686_10109046
402 Ga0207670_10098055
403 Ga0207669_10004498
404 Ga0207665_10095163
405 Ga0207665_10281011
406 Ga0207691_10007151
407 Ga0207711_10031951
408 Ga0207689_10001027
409 Ga0207661_10001512
410 Ga0207651_10295815
411 Ga0207712_10443994
412 Ga0207640_10298925
413 Ga0207658_10808598
414 Ga0207677_10086792
415 Ga0207677_10395033
416 Ga0207677_10550198
417 Ga0207677_10592632
418 Ga0207703_10172345
419 Ga0207678_10482875
420 Ga0207708_10490434
421 Ga0207702_10272952
422 Ga0207641_10422210
423 Ga0207648_10130412
424 Ga0207683_10076819
425 Ga0207698_10044016
426 Ga0207698_10139835
427 Ga0207698_10161886
428 Ga0209389_1000075
429 Ga0209589_1000085
430 Ga0209489_100062
431 Ga0209179_1048657
432 Ga0268265_10018106
433 Ga0307510_10212799
434 Ga0373934_0032923
435 Ga0373944_0029660
436 Ga0373945_0005834
437 Ga0373953_0121651
438 Ga0373953_0239729
439 Ga0373954_0032867
440 Ga0373956_0158824
441 Ga0373957_0128197
442 Ga0373946_0043693
443 Ga0373946_0059657
444 Ga0373955_0079067
445 Ga0373955_0214455
446 Ga0373924_0050165
447 Ga0373931_0486894
448 Ga0373935_0007120
449 Ga0373935_0338647
450 Ga0373927_0029069
451 Ga0373927_0036721
452 Ga0373933_0107437
453 Ga0373947_0009796
454 Ga0373937_0048348
455 Ga0373925_0225354
456 Ga0436365_1845823
457 Ga0436362_0274598
458 Ga0466967_0091374
459 Ga0466967_0333808
460 Ga0495592_0060485
461 Ga0495603_0011786
462 Ga0495629_0037485
463 Ga0495641_0025606
464 Ga0495653_0596073
465 Ga0495580_0026250
466 Ga0495580_0345819
467 Ga0495582_0001520
468 Ga0495639_0003605
469 Ga0495639_0170825
470 Ga0495662_0001699
471 Ga0495594_0011646
472 Ga0495594_0372622
473 Ga0495606_0082817
474 Ga0495610_0107172
475 Ga0495620_0066406
476 Ga0495630_0016914
477 Ga0495630_0107371
478 Ga0495648_0009975
479 Ga0495652_0057372
480 Ga0495652_0226357
481 Ga0495665_0003411
482 Ga0495665_0131252
483 Ga0495640_0008977
484 Ga0495640_0101704
485 Ga0495587_0335880
486 Ga0495598_0014631
487 Ga0495621_0002522
488 Ga0495622_0042885
489 Ga0495656_0032898
490 Ga0495634_0002719
491 Ga0495634_0114070
492 Ga0495625_0234631
493 Ga0495635_0012006
494 Ga0495588_0276646
495 Ga0495657_0222747
496 Ga0495623_0193976
497 Ga0495646_0113478
498 Ga0495647_0010289
499 Ga0495658_0007887
500 Ga0495613_0029019
501 Ga0495613_0109396
502 Ga0495624_0162801
503 Ga0495624_0328631
504 Ga0495581_0003908
505 Ga0495581_0073622
506 Ga0495674_0026239
507 Ga0495676_0034893
508 Ga0495676_0571221
509 Ga0495680_0146862
510 Ga0495677_0172651
511 Ga0495673_0030966
512 Ga0495673_0200884
513 Ga0495684_0036706
514 Ga0495684_0248020
515 Ga0495593_0005448
516 Ga0495593_0089650
517 Ga0495615_0052757
518 Ga0496100_0329517
519 Ga0496108_0162570
520 Ga0496108_0741234
521 Ga0496112_0200509
522 Ga0496118_0550586
523 Ga0496119_0042546
524 Ga0496121_0037580
525 Ga0496121_0146642
526 Ga0496121_0194304
527 Ga0496124_0018275
528 Ga0496124_0024140
529 Ga0496125_0027741
530 Ga0496125_0062436
531 Ga0496125_0387271
532 Ga0496126_0041765
533 Ga0496126_0277613
534 Ga0501046_0053650
535 Ga0501047_0041477
536 Ga0501070_0005562
537 Ga0501074_0038185
538 Ga0501080_0028356
539 Ga0501035_0528040
540 Ga0501044_0109861
541 nmdc:mga0yw44_639979_c1
542 nmdc:mga07m45_15384_c1
543 nmdc:mga08y16_264894_c1
544 nmdc:mga0n895_105599_c1
545 nmdc:mga0a205_57287_c1
546 Ga0495619_0133133
547 Ga0495619_0399032
548 Ga0500644_0137956
549 Ga0500646_0020450
550 Ga0500566_0000094
551 Ga0500595_029853
552 Ga0500614_004446
553 Ga0500655_016371
554 Ga0500559_0003665
555 Ga0500588_0107316
556 Ga0500609_014349
557 2509146479
558 2513894838

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

183

239

0.97

PF00072

Response_reg

Response regulator receiver domain

48

159

0.96

PF08281

Sigma70_r4_2

Sigma-70, region 4

175

226

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
1dck-assembly1.cif.gz_A structure of unphosphorylated fixj-n complexed with mn2+ 0.9374 4 120
1je8-assembly2.cif.gz_E two-component response regulator narl/dna complex: dna bending found in a high affinity site 0.9346 140 202
1d5w-assembly1.cif.gz_A phosphorylated fixj receiver domain 0.9269 1 120
4wsz-assembly1.cif.gz_B crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9128 138 202
1nxx-assembly1.cif.gz_A-2 micarec ph 5.5 0.9094 4 121
ID Description Score Start End Superfamily
1dckB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9322 1 120 3.40.50.2300
af_Q11028_1077_1158_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9298 141 198 1.10.10.10
1yioA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9263 141 198 1.10.10.10
1zn2A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9219 141 198 1.10.10.10
3klnC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9215 139 198 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A4Q7G639-F1-model_v4 DNA-binding response regulator 0.9596 1 204 GO:0000160
GO:0003677
GO:0006355
AF-A0A3B1AI15-F1-model_v4 Two-component nitrogen fixation transcriptional regulator FixJ 0.9556 1 199 GO:0000160
GO:0003677
GO:0006355
AF-A0A1L3RZP3-F1-model_v4 deleted 0.9511 1 200
AF-A0A0M4NIZ7-F1-model_v4 Histidine kinase 0.9502 2 203 GO:0000160
GO:0003677
GO:0006355
GO:0016301
AF-A0A0J8C0Z7-F1-model_v4 LuxR family transcriptional regulator 0.9497 5 204 GO:0000160
GO:0003677
GO:0006355

Map