F382391

General Info

Members Datasets Scaffolds Average Seq Length
278 171 250 437

Family's Representative Sequence

Representative Sequence 3300013307|Ga0157372_10036360|Ga0157372_100363602
Length 476
Sequence LEDFRAAQKRSQEAKAFTGNAREVIRVFLLSSGSVFLVTVLLSIQMATNTQIPKIVIVGGGFGGMELAKKLKDKPVEVLMLDRHNYHTFQPLLYQVATGALEAETITFPLRRIFQNQKNFSFFLAEVLKINQEKNSLETTIGEITYDYLVLATGADTNFFGSKELEHFSMGMKSVSEALNIRSMILQSFEAALTEKDPLEKEELMTFVVVGGGPTGVELAGALAEFKNHILEKDYPKLDDCDMRVFVVEGKSSVLGVMSENAASKAQKYLQEMGVIIYNDVHVKSFDGELLTIDDGRVLRTRNVLWAAGVIGQFPEGISADNIVKGRRIQTDEINRVKGALNIFAIGDVAAVITNDNPNGYPGVAQVALQQGKHLAKNLVALIEGKETEPFKYNDRGSMATIGRNKAVADIGKLKFAGFFAWLLWCFVHVFSLLGNQNRINVFITWMGRYFTYNGPSRLIIRPFSRQSMTEDAAAK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
3 2738541284 Pedobacter sp. YR016 Isolate Unclassified
4 2738541302 Pedobacter sp. CF074 Isolate Unclassified
5 2738543023 Pedobacter sp. OK628 Isolate Unclassified
6 2739367651 Pedobacter sp. OK291 Isolate Unclassified
7 2739367656 Pedobacter sp. CF523 Isolate Unclassified
8 2739367663 Pedobacter sp. YR510 Isolate Unclassified
9 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
10 2818991437 Pedobacter terrae 518 Isolate Unclassified
11 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
12 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
13 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
14 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
15 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
16 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
17 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
18 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
19 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
20 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
21 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
22 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
23 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
24 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
25 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
26 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
27 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
28 3300002077 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3 Metagenome Rhizosphere
29 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
30 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
31 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
32 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
33 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
34 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
35 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
36 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
37 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
38 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
39 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
40 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
41 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
42 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
43 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
44 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
45 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
46 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
47 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
48 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
49 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
50 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
51 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
52 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
53 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
54 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
55 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
56 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
57 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
58 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
59 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
60 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
61 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
62 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
63 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
64 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
65 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
66 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
67 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
68 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
69 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
70 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
71 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
72 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
73 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
74 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
75 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
76 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
77 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
78 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
79 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
80 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
81 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
82 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
83 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
84 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
85 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
86 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
87 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
88 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
89 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
90 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
91 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
92 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
93 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
94 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
95 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
96 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
97 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
98 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
120 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
122 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
123 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
124 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
125 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
126 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
127 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
128 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
129 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
130 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
131 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
132 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
133 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
134 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
135 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
136 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
137 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
138 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
139 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
140 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
141 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
142 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
143 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
144 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
145 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
146 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
147 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
148 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
149 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
150 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
151 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
152 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
153 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
154 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
155 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
156 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
157 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
158 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
159 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
160 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
161 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
162 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
163 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
164 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
165 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
166 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
167 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
168 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
169 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
170 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
171 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.93
Metatranscriptomes 0
Isolates 10.07

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.67
Nodule 0
Rhizoplane 0
Rhizosphere 77.34
Stem 0
Stem Tuber 0
Unclassified 8.99

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_629724 2162886007 Bacteria 2764
2 JGI24736J21556_1002417 3300001904 Bacteria 3300
3 JGI24744J21845_10002274 3300002077 Bacteria 3912
4 JGI25162J39368_1000017 3300002737 Bacteria 281385
5 JGI25162J39368_1001209 3300002737 Bacteria 15032
6 JGI25162J39368_1001318 3300002737 Bacteria 13921
7 JGI25152J39213_1000228 3300002773 Bacteria 37959
8 JGI25150J39212_1000002 3300002774 Bacteria 537631
9 JGI25151J46595_10000003 3300003187 Bacteria 715330
10 JGI25165J46597_1000615 3300003214 Bacteria 30104
11 JGI25165J46597_1001051 3300003214 Bacteria 17893
12 JGI25153J46596_10000003 3300003215 Bacteria 553253
13 rootH2_10024843 3300003320 Bacteria 5159
14 rootH2_10053168 3300003320 Bacteria 8993
15 rootH2_10147865 3300003320 Bacteria 4887
16 rootL2_10031826 3300003322 Bacteria 2602
17 rootH1_10008147 3300003323 Bacteria 15080
18 rootH1_10018482 3300003323 Bacteria 48371
19 rootH1_10161350 3300003323 Bacteria 5277
20 Ga0055536_1000007 3300003781 Bacteria 345133
21 Ga0065165_1000802 3300005262 Bacteria 41942
22 Ga0065714_10002655 3300005288 Bacteria 18426
23 Ga0065714_10064842 3300005288 Bacteria 17197
24 Ga0065714_10065558 3300005288 Bacteria 9412
25 Ga0065714_10066720 3300005288 Bacteria 6406
26 Ga0065714_10071959 3300005288 Bacteria 3461
27 Ga0065704_10075110 3300005289 Bacteria 5783
28 Ga0065712_10081770 3300005290 Bacteria 2976
29 Ga0065715_10005929 3300005293 Bacteria 3739
30 Ga0070676_10002876 3300005328 Bacteria 8893
31 Ga0070683_100138188 3300005329 Bacteria 2308
32 Ga0068868_100018594 3300005338 Bacteria 5199
33 Ga0070660_100016227 3300005339 Bacteria 5401
34 Ga0070671_100069931 3300005355 Bacteria 2928
35 Ga0070659_100000605 3300005366 Bacteria 26382
36 Ga0070659_100002083 3300005366 Bacteria 14235
37 Ga0070678_100000238 3300005456 Bacteria 25199
38 Ga0070662_100000343 3300005457 Bacteria 27936
39 Ga0070681_10280690 3300005458 Bacteria 1576
40 Ga0068867_100001894 3300005459 Bacteria 14557
41 Ga0070698_100001933 3300005471 Bacteria 23020
42 Ga0070699_100188152 3300005518 Unclassified 1833
43 Ga0070679_100071406 3300005530 Bacteria 3463
44 Ga0070697_100195296 3300005536 Viruses 1718
45 Ga0068853_100012708 3300005539 Bacteria 6856
46 Ga0068855_100000508 3300005563 Bacteria 48055
47 Ga0068855_100316879 3300005563 Bacteria 1725
48 Ga0068857_100081912 3300005577 Bacteria 2882
49 Ga0068857_100088690 3300005577 Unclassified 2767
50 Ga0068854_100015764 3300005578 Bacteria 5019
51 Ga0068856_100007535 3300005614 Bacteria 10621
52 Ga0068852_100000143 3300005616 Bacteria 48192
53 Ga0075366_10004625 3300006195 Bacteria 7396
54 Ga0097621_100000028 3300006237 Bacteria 71678
55 Ga0068871_100000066 3300006358 Bacteria 57980
56 Ga0068865_100000551 3300006881 Bacteria 20805
57 Ga0105244_10028728 3300009036 Bacteria 2980
58 Ga0105240_10000028 3300009093 Bacteria 347789
59 Ga0105240_10000876 3300009093 Bacteria 54171
60 Ga0105240_10007839 3300009093 Bacteria 15410
61 Ga0105240_10032200 3300009093 Bacteria 6790
62 Ga0105240_10038993 3300009093 Bacteria 6088
63 Ga0105240_10070316 3300009093 Bacteria 4330
64 Ga0105243_10114853 3300009148 Bacteria 2260
65 Ga0105241_10000711 3300009174 Bacteria 25180
66 Ga0105241_10002900 3300009174 Bacteria 12814
67 Ga0105241_10004477 3300009174 Bacteria 10333
68 Ga0105237_10000233 3300009545 Bacteria 79346
69 Ga0105237_10001267 3300009545 Bacteria 33722
70 Ga0105237_10004496 3300009545 Bacteria 16117
71 Ga0105237_10004508 3300009545 Bacteria 16094
72 Ga0105237_10006285 3300009545 Bacteria 13213
73 Ga0105237_10008720 3300009545 Bacteria 10948
74 Ga0105238_10004976 3300009551 Bacteria 13140
75 Ga0105239_10000039 3300010375 Bacteria 203537
76 Ga0105239_10000120 3300010375 Bacteria 110003
77 Ga0105239_10000445 3300010375 Bacteria 60337
78 Ga0105239_10008149 3300010375 Bacteria 11956
79 Ga0105239_10012753 3300010375 Bacteria 9351
80 Ga0105239_10013259 3300010375 Bacteria 9160
81 Ga0105239_10031709 3300010375 Bacteria 5808
82 Ga0105239_10122604 3300010375 Bacteria 2888
83 Ga0157373_10000119 3300013100 Bacteria 62053
84 Ga0157373_10001025 3300013100 Bacteria 21601
85 Ga0157373_10005760 3300013100 Bacteria 9275
86 Ga0157371_10000051 3300013102 Bacteria 180272
87 Ga0157371_10000216 3300013102 Bacteria 83975
88 Ga0157371_10000263 3300013102 Bacteria 71557
89 Ga0157371_10032353 3300013102 Bacteria 3764
90 Ga0157370_10007990 3300013104 Bacteria 11465
91 Ga0157370_10048059 3300013104 Bacteria 4088
92 Ga0157370_10092981 3300013104 Bacteria 2830
93 Ga0157370_10114380 3300013104 Bacteria 2521
94 Ga0157370_10124257 3300013104 Bacteria 2409
95 Ga0157370_10141015 3300013104 Bacteria 2246
96 Ga0157370_10146393 3300013104 Bacteria 2199
97 Ga0157370_10294460 3300013104 Bacteria 1499
98 Ga0157369_10003815 3300013105 Bacteria 17903
99 Ga0157369_10010481 3300013105 Bacteria 10555
100 Ga0157374_10000174 3300013296 Bacteria 59597
101 Ga0163162_10000130 3300013306 Bacteria 68177
102 Ga0157372_10000196 3300013307 Bacteria 66430
103 Ga0157372_10004462 3300013307 Bacteria 14931
104 Ga0157372_10007335 3300013307 Bacteria 11734
105 Ga0157372_10010335 3300013307 Bacteria 9917
106 Ga0157372_10036360 3300013307 Bacteria 5427
107 Ga0157372_10240940 3300013307 Bacteria 2099
108 Ga0157372_10310932 3300013307 Bacteria 1834
109 Ga0182008_10000023 3300014497 Bacteria 201526
110 Ga0182008_10000318 3300014497 Bacteria 37908
111 Ga0157377_10006453 3300014745 Bacteria 5598
112 Ga0182006_1000463 3300015261 Bacteria 31833
113 Ga0182006_1003693 3300015261 Bacteria 7748
114 Ga0182007_10000010 3300015262 Bacteria 286070
115 Ga0183373_1005 3300015682 Bacteria 351562
116 Ga0163161_10000206 3300017792 Bacteria 54119
117 Ga0163161_10005793 3300017792 Bacteria 8568
118 Ga0163161_10089674 3300017792 Bacteria 2274
119 Ga0163161_10176636 3300017792 Bacteria 1635
120 Ga0207427_100103 3300025231 Bacteria 119618
121 Ga0207427_100172 3300025231 Bacteria 71550
122 Ga0209437_100024 3300025233 Bacteria 592878
123 Ga0209437_100034 3300025233 Bacteria 494007
124 Ga0209437_100101 3300025233 Bacteria 226668
125 Ga0207425_1000004 3300025245 Bacteria 1092421
126 Ga0209026_1001771 3300025250 Bacteria 8938
127 Ga0209026_1003657 3300025250 Bacteria 4932
128 Ga0209026_1009381 3300025250 Bacteria 1927
129 Ga0209129_1000005 3300025258 Bacteria 777812
130 Ga0209233_1000038 3300025261 Bacteria 548972
131 Ga0209233_1000124 3300025261 Bacteria 226743
132 Ga0209233_1001998 3300025261 Bacteria 7718
133 Ga0209676_1000058 3300025292 Bacteria 345185
134 Ga0209025_1000009 3300025294 Bacteria 1092561
135 Ga0209758_1000010 3300025297 Bacteria 1092782
136 Ga0209050_1000054 3300025298 Bacteria 345186
137 Ga0207647_10000076 3300025904 Bacteria 75824
138 Ga0207647_10000104 3300025904 Bacteria 65696
139 Ga0207647_10000328 3300025904 Bacteria 38905
140 Ga0207645_10000190 3300025907 Bacteria 49657
141 Ga0207684_10068574 3300025910 Bacteria 3014
142 Ga0207654_10000978 3300025911 Bacteria 15688
143 Ga0207654_10005955 3300025911 Bacteria 6137
144 Ga0207654_10039042 3300025911 Bacteria 2667
145 Ga0207695_10000013 3300025913 Bacteria 821265
146 Ga0207695_10000088 3300025913 Bacteria 275833
147 Ga0207695_10008101 3300025913 Bacteria 13214
148 Ga0207695_10014055 3300025913 Bacteria 9506
149 Ga0207671_10000663 3300025914 Bacteria 44922
150 Ga0207671_10002021 3300025914 Bacteria 22315
151 Ga0207671_10003612 3300025914 Bacteria 15280
152 Ga0207671_10019639 3300025914 Bacteria 5163
153 Ga0207671_10021797 3300025914 Bacteria 4854
154 Ga0207657_10033360 3300025919 Bacteria 4642
155 Ga0207694_10012622 3300025924 Bacteria 6365
156 Ga0207694_10104748 3300025924 Bacteria 2245
157 Ga0207644_10050022 3300025931 Bacteria 2994
158 Ga0207690_10004892 3300025932 Bacteria 7903
159 Ga0207690_10040701 3300025932 Bacteria 3040
160 Ga0207706_10000778 3300025933 Bacteria 33033
161 Ga0207709_10069672 3300025935 Bacteria 2227
162 Ga0207669_10085820 3300025937 Bacteria 2033
163 Ga0207704_10000073 3300025938 Bacteria 62449
164 Ga0207665_10193885 3300025939 Bacteria 1477
165 Ga0207667_10009017 3300025949 Bacteria 11800
166 Ga0207667_10075928 3300025949 Bacteria 3488
167 Ga0207651_10046943 3300025960 Unclassified 2908
168 Ga0207640_10105142 3300025981 Bacteria 1989
169 Ga0207677_10110262 3300026023 Bacteria 2048
170 Ga0207639_10037544 3300026041 Bacteria 3599
171 Ga0207639_10052596 3300026041 Bacteria 3104
172 Ga0207702_10010549 3300026078 Bacteria 7724
173 Ga0207674_10039644 3300026116 Bacteria 4882
174 Ga0207674_10107109 3300026116 Unclassified 2772
175 Ga0207683_10002525 3300026121 Bacteria 15981
176 Ga0207698_10006150 3300026142 Bacteria 7474
177 Ga0265318_10026174 3300028577 Bacteria 2299
178 Ga0307515_10000353 3300028794 Bacteria 112876
179 Ga0307515_10011327 3300028794 Bacteria 16927
180 Ga0307515_10223376 3300028794 Bacteria 1695
181 Ga0307408_100002098 3300031548 Bacteria 14350
182 Ga0307408_100007330 3300031548 Bacteria 7297
183 Ga0307408_100007638 3300031548 Bacteria 7150
184 Ga0307405_10000035 3300031731 Bacteria 92134
185 Ga0307405_10000048 3300031731 Bacteria 67670
186 Ga0307405_10031090 3300031731 Unclassified 3139
187 Ga0307413_10131610 3300031824 Bacteria 1713
188 Ga0307406_10076265 3300031901 Bacteria 2214
189 Ga0307407_10000005 3300031903 Bacteria 233125
190 Ga0307412_10000004 3300031911 Bacteria 544053
191 Ga0307412_10000847 3300031911 Bacteria 17599
192 Ga0307416_100000001 3300032002 Bacteria 515017
193 Ga0307414_10000313 3300032004 Bacteria 28201
194 Ga0307414_10001582 3300032004 Bacteria 11819
195 Ga0307414_10006873 3300032004 Bacteria 6367
196 Ga0307414_10018574 3300032004 Bacteria 4286
197 Ga0307414_10025190 3300032004 Bacteria 3806
198 Ga0307414_10063625 3300032004 Bacteria 2623
199 Ga0307507_10000052 3300033179 Bacteria 168303
200 Ga0373957_0027380 3300035120 Unclassified 2071
201 Ga0373935_0002891 3300035692 Bacteria 9880
202 Ga0395899_0000002 3300037312 Bacteria 1324310
203 Ga0395899_0000033 3300037312 Bacteria 306589
204 Ga0395899_0000640 3300037312 Bacteria 36134
205 Ga0395900_0001694 3300037418 Bacteria 25602
206 Ga0395901_0066776 3300038443 Bacteria 3746
207 Ga0395901_0137376 3300038443 Bacteria 2569
208 Ga0436361_0399615 3300039447 Bacteria 11828
209 Ga0439448_0004330 3300042005 Bacteria 4003
210 Ga0439449_0039419 3300042007 Unclassified 1756
211 Ga0439457_004687 3300042014 Bacteria 3534
212 Ga0451576_0017195 3300045051 Bacteria 7956
213 Ga0495651_0081648 3300046462 Bacteria 2440
214 Ga0495606_0035897 3300046507 Bacteria 3384
215 Ga0495610_0000074 3300046512 Bacteria 120043
216 Ga0495610_0000405 3300046512 Bacteria 44184
217 Ga0495616_0016939 3300046513 Bacteria 4025
218 Ga0495637_0021755 3300046520 Bacteria 2935
219 Ga0495644_0014275 3300046523 Bacteria 3044
220 Ga0495652_0087293 3300046529 Bacteria 2559
221 Ga0495633_0000029 3300046558 Bacteria 200381
222 Ga0495668_0000070 3300046616 Bacteria 174051
223 Ga0495625_0004413 3300046660 Bacteria 13320
224 Ga0495625_0010618 3300046660 Bacteria 7597
225 Ga0495625_0029098 3300046660 Bacteria 4135
226 Ga0495625_0031805 3300046660 Bacteria 3921
227 Ga0495661_0001360 3300046665 Bacteria 20657
228 Ga0495681_0035717 3300047470 Bacteria 2466
229 Ga0495686_0000052 3300047472 Bacteria 262622
230 Ga0495686_0001661 3300047472 Bacteria 23172
231 Ga0495614_0003441 3300048089 Bacteria 7085
232 Ga0501040_0060340 3300049576 Unclassified 2606
233 Ga0501068_0005028 3300049584 Bacteria 7203
234 Ga0501075_0001196 3300049591 Bacteria 16787
235 Ga0501080_0002990 3300049742 Bacteria 14896
236 nmdc:mga0k408_4467_c1 3300050493 Bacteria 7421
237 nmdc:mga0k408_778_c1 3300050493 Bacteria 17529
238 Ga0500635_0000678 3300053080 Bacteria 8618
239 Ga0500635_0000806 3300053080 Bacteria 7735
240 Ga0500635_0039996 3300053080 Bacteria 1563
241 Ga0495595_0098214 3300053084 Unclassified 1411
242 Ga0495619_0033134 3300053085 Unclassified 3355
243 Ga0500651_0000168 3300053093 Bacteria 42658
244 Ga0500608_007061 3300053122 Bacteria 4618
245 Ga0500618_000037 3300053125 Bacteria 117320
246 Ga0500622_0000216 3300053156 Bacteria 61250
247 Ga0500622_0002157 3300053156 Bacteria 14602
248 Ga0500624_000134 3300053157 Bacteria 31729
249 Ga0500624_000167 3300053157 Bacteria 26625
250 Ga0501082_0000665 3300060353 Bacteria 30227

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300053084 Ga0495595_0098214 Ga0495595_0098214_207_1394 391
2 3300005518 Ga0070699_100188152 Ga0070699_1001881522 393
3 3300005536 Ga0070697_100195296 Ga0070697_1001952961 393
4 3300009093 Ga0105240_10000028 Ga0105240_10000028252 395
5 3300005290 Ga0065712_10081770 Ga0065712_100817704 397
6 3300005293 Ga0065715_10005929 Ga0065715_100059296 397
7 3300005471 Ga0070698_100001933 Ga0070698_1000019338 397
8 3300025910 Ga0207684_10068574 Ga0207684_100685742 397
9 3300038443 Ga0395901_0137376 Ga0395901_0137376_483_1763 397
10 3300025939 Ga0207665_10193885 Ga0207665_101938851 401
11 3300049576 Ga0501040_0060340 Ga0501040_0060340_504_1808 401
12 3300005563 Ga0068855_100000508 Ga0068855_10000050820 402
13 3300025949 Ga0207667_10009017 Ga0207667_1000901710 402
14 3300028577 Ga0265318_10026174 Ga0265318_100261742 402
15 3300005288 Ga0065714_10071959 Ga0065714_100719592 404
16 3300025250 Ga0209026_1001771 Ga0209026_10017712 406
17 3300003322 rootL2_10031826 rootL2_100318262 414
18 3300032004 Ga0307414_10001582 Ga0307414_1000158211 414
19 3300047470 Ga0495681_0035717 Ga0495681_0035717_1089_2423 415
20 3300028794 Ga0307515_10223376 Ga0307515_102233761 416
21 3300035692 Ga0373935_0002891 Ga0373935_0002891_1588_2844 416
22 3300025913 Ga0207695_10000088 Ga0207695_1000008860 417
23 3300053156 Ga0500622_0000216 Ga0500622_0000216_54151_55491 417
24 iso_pu_bacteria 2833640130 2833642723 418
25 iso_pu_bacteria 2852623160 2852623532 421
26 iso_pu_bacteria 2884933994 2884937567 421
27 3300035120 Ga0373957_0027380 Ga0373957_0027380_225_1529 422
28 3300053085 Ga0495619_0033134 Ga0495619_0033134_1058_2362 422
29 iso_pu_bacteria 2902048731 2902050834 422
30 3300003323 rootH1_10008147 rootH1_100081476 423
31 3300005262 Ga0065165_1000802 Ga0065165_100080221 423
32 3300031548 Ga0307408_100007330 Ga0307408_1000073305 423
33 3300031548 Ga0307408_100007638 Ga0307408_1000076382 423
34 3300031911 Ga0307412_10000847 Ga0307412_100008472 423
35 iso_pu_bacteria 8055588893 8055589611 423
36 3300042007 Ga0439449_0039419 Ga0439449_0039419_271_1572 424
37 3300042014 Ga0439457_004687 Ga0439457_004687_1647_2948 424
38 3300049584 Ga0501068_0005028 Ga0501068_0005028_2762_4096 424
39 3300049591 Ga0501075_0001196 Ga0501075_0001196_5407_6741 424
40 3300049742 Ga0501080_0002990 Ga0501080_0002990_7664_8998 424
41 3300060353 Ga0501082_0000665 Ga0501082_0000665_10096_11430 424
42 3300002737 JGI25162J39368_1001318 JGI25162J39368_100131815 425
43 3300003214 JGI25165J46597_1001051 JGI25165J46597_10010518 425
44 3300005366 Ga0070659_100002083 Ga0070659_10000208314 425
45 3300005577 Ga0068857_100088690 Ga0068857_1000886902 425
46 3300013100 Ga0157373_10001025 Ga0157373_100010255 425
47 3300013102 Ga0157371_10000216 Ga0157371_1000021647 425
48 3300013104 Ga0157370_10146393 Ga0157370_101463933 425
49 3300013307 Ga0157372_10000196 Ga0157372_100001965 425
50 3300013307 Ga0157372_10036360 Ga0157372_100363602 425
51 3300025231 Ga0207427_100103 Ga0207427_10010318 425
52 3300025233 Ga0209437_100101 Ga0209437_10010139 425
53 3300025250 Ga0209026_1009381 Ga0209026_10093812 425
54 3300025261 Ga0209233_1000124 Ga0209233_1000124197 425
55 3300025261 Ga0209233_1001998 Ga0209233_10019988 425
56 3300025904 Ga0207647_10000104 Ga0207647_1000010445 425
57 3300026116 Ga0207674_10107109 Ga0207674_101071093 425
58 3300031731 Ga0307405_10031090 Ga0307405_100310903 425
59 3300037312 Ga0395899_0000033 Ga0395899_0000033_48539_49837 425
60 3300045051 Ga0451576_0017195 Ga0451576_0017195_6569_7894 425
61 3300046513 Ga0495616_0016939 Ga0495616_0016939_929_2227 425
62 3300046660 Ga0495625_0029098 Ga0495625_0029098_457_1755 425
63 3300046665 Ga0495661_0001360 Ga0495661_0001360_6366_7664 425
64 3300053080 Ga0500635_0000678 Ga0500635_0000678_5262_6557 425
65 3300053157 Ga0500624_000167 Ga0500624_000167_570_1868 425
66 iso_pu_bacteria 2738541302 2738856665 425
67 3300005458 Ga0070681_10280690 Ga0070681_102806901 426
68 3300005530 Ga0070679_100071406 Ga0070679_1000714064 426
69 3300006195 Ga0075366_10004625 Ga0075366_100046257 426
70 3300046523 Ga0495644_0014275 Ga0495644_0014275_1412_2722 426
71 3300050493 nmdc:mga0k408_4467_c1 nmdc:mga0k408_4467_c1_1292_2596 426
72 3300053156 Ga0500622_0002157 Ga0500622_0002157_31_1335 426
73 iso_pu_bacteria 2739367656 2739615340 426
74 3300032004 Ga0307414_10063625 Ga0307414_100636253 427
75 3300017792 Ga0163161_10089674 Ga0163161_100896741 428
76 3300032004 Ga0307414_10025190 Ga0307414_100251903 428
77 iso_pu_bacteria 2739367663 2739644302 428
78 iso_pu_bacteria 2852623160 2852626877 428
79 iso_pu_bacteria 2884933994 2884938074 428
80 iso_pu_bacteria 2919437846 2919438979 428
81 3300005288 Ga0065714_10064842 Ga0065714_100648426 429
82 3300013104 Ga0157370_10294460 Ga0157370_102944601 429
83 3300013306 Ga0163162_10000130 Ga0163162_1000013064 429
84 3300015262 Ga0182007_10000010 Ga0182007_10000010216 429
85 3300015682 Ga0183373_1005 Ga0183373_1005202 429
86 3300017792 Ga0163161_10000206 Ga0163161_100002066 429
87 3300046512 Ga0495610_0000074 Ga0495610_0000074_10095_11414 429
88 3300046512 Ga0495610_0000405 Ga0495610_0000405_4649_5974 429
89 3300046520 Ga0495637_0021755 Ga0495637_0021755_692_2017 429
90 iso_pu_bacteria 2818991437 2819548508 429
91 iso_pu_bacteria 2857627736 2857631174 429
92 3300001904 JGI24736J21556_1002417 JGI24736J21556_10024172 430
93 3300002077 JGI24744J21845_10002274 JGI24744J21845_100022742 430
94 3300002737 JGI25162J39368_1000017 JGI25162J39368_100001755 430
95 3300002737 JGI25162J39368_1001209 JGI25162J39368_10012098 430
96 3300003214 JGI25165J46597_1000615 JGI25165J46597_100061532 430
97 3300003320 rootH2_10024843 rootH2_100248435 430
98 3300003320 rootH2_10053168 rootH2_100531687 430
99 3300003320 rootH2_10147865 rootH2_101478653 430
100 3300003323 rootH1_10018482 rootH1_1001848222 430
101 3300003323 rootH1_10161350 rootH1_101613505 430
102 3300005328 Ga0070676_10002876 Ga0070676_100028766 430
103 3300005329 Ga0070683_100138188 Ga0070683_1001381881 430
104 3300005338 Ga0068868_100018594 Ga0068868_1000185942 430
105 3300005339 Ga0070660_100016227 Ga0070660_1000162272 430
106 3300005355 Ga0070671_100069931 Ga0070671_1000699312 430
107 3300005366 Ga0070659_100000605 Ga0070659_1000006057 430
108 3300005456 Ga0070678_100000238 Ga0070678_10000023812 430
109 3300005457 Ga0070662_100000343 Ga0070662_1000003436 430
110 3300005459 Ga0068867_100001894 Ga0068867_1000018947 430
111 3300005539 Ga0068853_100012708 Ga0068853_1000127083 430
112 3300005563 Ga0068855_100316879 Ga0068855_1003168791 430
113 3300005578 Ga0068854_100015764 Ga0068854_1000157642 430
114 3300005614 Ga0068856_100007535 Ga0068856_1000075355 430
115 3300005616 Ga0068852_100000143 Ga0068852_10000014334 430
116 3300006237 Ga0097621_100000028 Ga0097621_10000002851 430
117 3300006358 Ga0068871_100000066 Ga0068871_10000006648 430
118 3300006881 Ga0068865_100000551 Ga0068865_10000055122 430
119 3300009093 Ga0105240_10000876 Ga0105240_1000087630 430
120 3300009093 Ga0105240_10007839 Ga0105240_100078395 430
121 3300009093 Ga0105240_10032200 Ga0105240_100322002 430
122 3300009093 Ga0105240_10038993 Ga0105240_100389938 430
123 3300009093 Ga0105240_10070316 Ga0105240_100703162 430
124 3300009148 Ga0105243_10114853 Ga0105243_101148533 430
125 3300009174 Ga0105241_10000711 Ga0105241_1000071121 430
126 3300009174 Ga0105241_10002900 Ga0105241_1000290011 430
127 3300009174 Ga0105241_10004477 Ga0105241_100044778 430
128 3300009545 Ga0105237_10000233 Ga0105237_1000023335 430
129 3300009545 Ga0105237_10001267 Ga0105237_1000126731 430
130 3300009545 Ga0105237_10004496 Ga0105237_100044962 430
131 3300009545 Ga0105237_10004508 Ga0105237_100045086 430
132 3300009545 Ga0105237_10006285 Ga0105237_100062859 430
133 3300009545 Ga0105237_10008720 Ga0105237_100087202 430
134 3300009551 Ga0105238_10004976 Ga0105238_1000497610 430
135 3300010375 Ga0105239_10000039 Ga0105239_10000039103 430
136 3300010375 Ga0105239_10000120 Ga0105239_1000012041 430
137 3300010375 Ga0105239_10000445 Ga0105239_100004452 430
138 3300010375 Ga0105239_10008149 Ga0105239_100081499 430
139 3300010375 Ga0105239_10012753 Ga0105239_1001275310 430
140 3300010375 Ga0105239_10013259 Ga0105239_100132598 430
141 3300010375 Ga0105239_10031709 Ga0105239_100317092 430
142 3300010375 Ga0105239_10122604 Ga0105239_101226043 430
143 3300013100 Ga0157373_10000119 Ga0157373_1000011925 430
144 3300013102 Ga0157371_10032353 Ga0157371_100323532 430
145 3300013104 Ga0157370_10141015 Ga0157370_101410152 430
146 3300013296 Ga0157374_10000174 Ga0157374_1000017437 430
147 3300013307 Ga0157372_10010335 Ga0157372_100103355 430
148 3300013307 Ga0157372_10240940 Ga0157372_102409401 430
149 3300014745 Ga0157377_10006453 Ga0157377_100064533 430
150 3300017792 Ga0163161_10176636 Ga0163161_101766361 430
151 3300025231 Ga0207427_100172 Ga0207427_10017229 430
152 3300025233 Ga0209437_100024 Ga0209437_100024260 430
153 3300025233 Ga0209437_100034 Ga0209437_100034134 430
154 3300025250 Ga0209026_1003657 Ga0209026_10036573 430
155 3300025261 Ga0209233_1000038 Ga0209233_1000038134 430
156 3300025904 Ga0207647_10000328 Ga0207647_1000032827 430
157 3300025907 Ga0207645_10000190 Ga0207645_1000019050 430
158 3300025911 Ga0207654_10000978 Ga0207654_100009787 430
159 3300025911 Ga0207654_10005955 Ga0207654_100059555 430
160 3300025911 Ga0207654_10039042 Ga0207654_100390422 430
161 3300025913 Ga0207695_10000013 Ga0207695_10000013295 430
162 3300025913 Ga0207695_10008101 Ga0207695_100081018 430
163 3300025913 Ga0207695_10014055 Ga0207695_100140554 430
164 3300025914 Ga0207671_10000663 Ga0207671_1000066335 430
165 3300025914 Ga0207671_10002021 Ga0207671_1000202122 430
166 3300025914 Ga0207671_10003612 Ga0207671_100036129 430
167 3300025914 Ga0207671_10019639 Ga0207671_100196392 430
168 3300025914 Ga0207671_10021797 Ga0207671_100217972 430
169 3300025919 Ga0207657_10033360 Ga0207657_100333602 430
170 3300025924 Ga0207694_10012622 Ga0207694_100126226 430
171 3300025924 Ga0207694_10104748 Ga0207694_101047481 430
172 3300025931 Ga0207644_10050022 Ga0207644_100500222 430
173 3300025932 Ga0207690_10004892 Ga0207690_100048925 430
174 3300025933 Ga0207706_10000778 Ga0207706_100007787 430
175 3300025935 Ga0207709_10069672 Ga0207709_100696722 430
176 3300025937 Ga0207669_10085820 Ga0207669_100858202 430
177 3300025938 Ga0207704_10000073 Ga0207704_1000007364 430
178 3300025949 Ga0207667_10075928 Ga0207667_100759282 430
179 3300025960 Ga0207651_10046943 Ga0207651_100469433 430
180 3300025981 Ga0207640_10105142 Ga0207640_101051421 430
181 3300026023 Ga0207677_10110262 Ga0207677_101102621 430
182 3300026041 Ga0207639_10037544 Ga0207639_100375442 430
183 3300026041 Ga0207639_10052596 Ga0207639_100525962 430
184 3300026078 Ga0207702_10010549 Ga0207702_100105492 430
185 3300026121 Ga0207683_10002525 Ga0207683_1000252520 430
186 3300026142 Ga0207698_10006150 Ga0207698_100061508 430
187 3300028794 Ga0307515_10000353 Ga0307515_100003532 430
188 3300028794 Ga0307515_10011327 Ga0307515_1001132711 430
189 3300033179 Ga0307507_10000052 Ga0307507_1000005242 430
190 3300037312 Ga0395899_0000002 Ga0395899_0000002_987363_988679 430
191 3300037418 Ga0395900_0001694 Ga0395900_0001694_12549_13862 430
192 3300039447 Ga0436361_0399615 Ga0436361_0399615_8340_9653 430
193 3300042005 Ga0439448_0004330 Ga0439448_0004330_1801_3114 430
194 3300046462 Ga0495651_0081648 Ga0495651_0081648_595_1908 430
195 3300046507 Ga0495606_0035897 Ga0495606_0035897_1626_2939 430
196 3300046529 Ga0495652_0087293 Ga0495652_0087293_494_1807 430
197 3300046558 Ga0495633_0000029 Ga0495633_0000029_176275_177588 430
198 3300046616 Ga0495668_0000070 Ga0495668_0000070_43239_44552 430
199 3300046660 Ga0495625_0004413 Ga0495625_0004413_2670_3983 430
200 3300046660 Ga0495625_0010618 Ga0495625_0010618_5791_7104 430
201 3300046660 Ga0495625_0031805 Ga0495625_0031805_404_1717 430
202 3300047472 Ga0495686_0000052 Ga0495686_0000052_206210_207523 430
203 3300047472 Ga0495686_0001661 Ga0495686_0001661_9570_10883 430
204 3300048089 Ga0495614_0003441 Ga0495614_0003441_2607_3920 430
205 3300050493 nmdc:mga0k408_778_c1 nmdc:mga0k408_778_c1_14935_16308 430
206 3300053080 Ga0500635_0039996 Ga0500635_0039996_55_1368 430
207 3300053122 Ga0500608_007061 Ga0500608_007061_196_1509 430
208 3300053125 Ga0500618_000037 Ga0500618_000037_62493_63806 430
209 iso_pu_bacteria 2585427687 2586208517 430
210 iso_pu_bacteria 2739367651 2739590103 430
211 iso_pu_bacteria 2842722452 2842722917 430
212 iso_pu_bacteria 2842909656 2842913339 430
213 iso_pu_bacteria 2849281842 2849284484 430
214 iso_pu_bacteria 2852627209 2852627733 430
215 iso_pu_bacteria 2904445276 2904448515 430
216 iso_pu_bacteria 2919186247 2919187910 430
217 iso_pu_bacteria 2939664404 2939664823 430
218 iso_pu_bacteria 2945997725 2945999878 430
219 iso_pu_bacteria 2954016120 2954016495 430
220 iso_pu_bacteria 2965320100 2965323674 430
221 3300002773 JGI25152J39213_1000228 JGI25152J39213_100022818 431
222 3300002774 JGI25150J39212_1000002 JGI25150J39212_1000002177 431
223 3300003187 JGI25151J46595_10000003 JGI25151J46595_10000003480 431
224 3300003215 JGI25153J46596_10000003 JGI25153J46596_10000003312 431
225 3300003781 Ga0055536_1000007 Ga0055536_100000746 431
226 3300005288 Ga0065714_10065558 Ga0065714_100655587 431
227 3300005577 Ga0068857_100081912 Ga0068857_1000819123 431
228 3300009036 Ga0105244_10028728 Ga0105244_100287282 431
229 3300013100 Ga0157373_10005760 Ga0157373_100057605 431
230 3300013102 Ga0157371_10000263 Ga0157371_1000026364 431
231 3300013104 Ga0157370_10007990 Ga0157370_100079902 431
232 3300013104 Ga0157370_10092981 Ga0157370_100929813 431
233 3300013104 Ga0157370_10114380 Ga0157370_101143803 431
234 3300013105 Ga0157369_10010481 Ga0157369_1001048112 431
235 3300013307 Ga0157372_10004462 Ga0157372_100044624 431
236 3300025245 Ga0207425_1000004 Ga0207425_1000004766 431
237 3300025258 Ga0209129_1000005 Ga0209129_1000005176 431
238 3300025292 Ga0209676_1000058 Ga0209676_100005845 431
239 3300025294 Ga0209025_1000009 Ga0209025_1000009766 431
240 3300025297 Ga0209758_1000010 Ga0209758_1000010767 431
241 3300025298 Ga0209050_1000054 Ga0209050_100005445 431
242 3300025904 Ga0207647_10000076 Ga0207647_1000007634 431
243 3300025932 Ga0207690_10040701 Ga0207690_100407012 431
244 3300026116 Ga0207674_10039644 Ga0207674_100396443 431
245 3300037312 Ga0395899_0000640 Ga0395899_0000640_3659_4975 431
246 3300038443 Ga0395901_0066776 Ga0395901_0066776_91_1413 431
247 3300053080 Ga0500635_0000806 Ga0500635_0000806_4083_5414 431
248 3300053157 Ga0500624_000134 Ga0500624_000134_7973_9274 431
249 3300005288 Ga0065714_10002655 Ga0065714_1000265513 432
250 3300005288 Ga0065714_10066720 Ga0065714_100667202 432
251 3300013102 Ga0157371_10000051 Ga0157371_100000513 432
252 3300013104 Ga0157370_10048059 Ga0157370_100480595 432
253 3300013104 Ga0157370_10124257 Ga0157370_101242572 432
254 3300013105 Ga0157369_10003815 Ga0157369_1000381516 432
255 3300013307 Ga0157372_10007335 Ga0157372_100073356 432
256 3300013307 Ga0157372_10310932 Ga0157372_103109322 432
257 3300014497 Ga0182008_10000023 Ga0182008_10000023116 432
258 3300014497 Ga0182008_10000318 Ga0182008_100003182 432
259 3300015261 Ga0182006_1000463 Ga0182006_100046329 432
260 3300017792 Ga0163161_10005793 Ga0163161_100057932 432
261 3300031548 Ga0307408_100002098 Ga0307408_10000209813 432
262 3300031731 Ga0307405_10000035 Ga0307405_100000357 432
263 3300031903 Ga0307407_10000005 Ga0307407_1000000561 432
264 3300031911 Ga0307412_10000004 Ga0307412_10000004246 432
265 3300032002 Ga0307416_100000001 Ga0307416_100000001387 432
266 3300032004 Ga0307414_10000313 Ga0307414_1000031325 432
267 3300032004 Ga0307414_10006873 Ga0307414_100068736 432
268 3300053093 Ga0500651_0000168 Ga0500651_0000168_11197_12600 432
269 iso_pu_bacteria 2738541284 2738763038 432
270 iso_pu_bacteria 2738543023 2739301798 432
271 iso_pu_bacteria 2775506987 2776614670 432
272 2162886007 SwRhRL2b_contig_629724 SwRhRL2b_0653.00001650 434
273 3300005289 Ga0065704_10075110 Ga0065704_100751104 434
274 3300015261 Ga0182006_1003693 Ga0182006_10036934 434
275 3300031731 Ga0307405_10000048 Ga0307405_1000004849 434
276 3300031824 Ga0307413_10131610 Ga0307413_101316102 434
277 3300031901 Ga0307406_10076265 Ga0307406_100762651 434
278 3300032004 Ga0307414_10018574 Ga0307414_100185742 434

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22366

NDH2_C

NDH2 C-terminal domain

396

452

0.94

PF00070

Pyr_redox

Pyridine nucleotide-disulphide oxidoreductase

206

298

0.91

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

53

372

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
4nwz-assembly1.cif.gz_A structure of bacterial type ii nadh dehydrogenase from caldalkalibacillus thermarum at 2.5a resolution 0.918 9 400
5kmq-assembly2.cif.gz_C the structure of i379e variant of type ii nadh dehydrogenase from caldalkalibacillus thermarum 0.9171 9 400
5kmp-assembly1.cif.gz_A the structure of g164e variant of type ii nadh dehydrogenase from caldalkalibacillus thermarum 0.9165 9 400
5kmq-assembly1.cif.gz_B the structure of i379e variant of type ii nadh dehydrogenase from caldalkalibacillus thermarum 0.9162 9 400
5kmr-assembly2.cif.gz_C the structure of type ii nadh dehydrogenase from caldalkalibacillus thermarum complexed with nad+ at 3.0 angstrom resolution. 0.9152 9 400
ID Description Score Start End Superfamily
af_A0A1D6LPC7_51_198_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9298 6 129 3.50.50.60
af_Q8I302_30_421_3.50.50.100 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.9287 6 309 3.50.50.100
af_P95200_9_428_3.50.50.100 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.9246 4 407 3.50.50.100
af_Q5QLT6_55_454_3.50.50.100 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.9228 4 373 3.50.50.100
af_Q55CD9_31_450_3.50.50.100 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.9164 8 419 3.50.50.100
ID Description Score Start End GO Terms
AF-A0A519XK41-F1-model_v4 NADH:ubiquinone reductase (non-electrogenic) (EC 1.6.5.9) 0.9888 38 396 GO:0003954
GO:0006116
GO:0016020
AF-A0A520GUG5-F1-model_v4 NADH:ubiquinone reductase (non-electrogenic) (EC 1.6.5.9) 0.9879 230 351 GO:0003954
GO:0006116
AF-A0A2D6S8V5-F1-model_v4 deleted 0.9875 1 319
AF-A0A7C2R2R8-F1-model_v4 NADH:ubiquinone reductase (non-electrogenic) (EC 1.6.5.9) 0.9867 1 345 GO:0003954
GO:0006116
AF-A0A519TDB5-F1-model_v4 NADH:ubiquinone reductase (non-electrogenic) (EC 1.6.5.9) 0.9867 1 298 GO:0003954
GO:0006116

Feature Viewer

pLDDT pTM Quality
87.73 0.85 High
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Predicted Structure (AlphaFold2)

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