F380071

General Info

Members Datasets Scaffolds Average Seq Length
274 205 166 530

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2643221637|2644210727
Length 591
Sequence LRFLPAGSDSFMVELADLESTLTLLDRMLAAPPEGVFETIPAARTLMVRFDPLVTDRARLSAYIRGLDLTERSAREGELFEIPVTYDGEDLADVADILGWTVEDVVRRHTAATYTVAFTGFAPGFAYMTADDPGFDVPRRKSPRVRIPAGAVALGGKFGGIYPSDSPGGWQLLGRTPLKMWDTSRPRAALLAPGDRVHFRDMAKGATVGFVPSIQHDVDAVSPHHPLAAAPTSPPQGGRLEYEGASRPISPLEGEMPGRAEGGKAANSARAATPPLPSPGKIFSETAGLRVLRADRPALYQDFGRAGRADQGVGESGALDRLAMQEANLTVGNPRETAVVEVTFGGFAIEADEPVTLSVFGAPSPLRIDTADGRQIAAPFARAFALDAGDRLTLDAPAEGMRSYLALRGGFAVEPVLGSASTDTLAKVGPPPIVAGDRLMLAGNRAAAVDPAPALPSPLPRAGDVVRLDVILGPRTDWFTQKGLDTFIAQEWTVTAESSRVGMRLSGPSPIERRDQAELPSEATAIGAIQVPHTGQPVLFLADHPLTGGYPVIGSVARHHLDLAGQIPIGARIRFNPIAGFDPEDAESLTR

Samples

Sample ID Description Type Environment
1 2508501122 Ensifer yinggardensis WSM1721 Isolate Nodule
2 2513020051 Variovorax sp. CF313 Isolate Rhizosphere
3 2513237088 Rhizobium mesoamericanum STM6155 Isolate Nodule
4 2513237165 Cupriavidus neocaledonicus STM6070 Isolate Nodule
5 2516143018 Ensifer sp. BR816 Isolate Nodule
6 2519899620 Rhizobium sp. Pop5 Isolate Nodule
7 2524023207 Ensifer sp. USDA 6670 Isolate Nodule
8 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
9 2558860100 Sinorhizobium sp. PC2 Isolate Nodule
10 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
11 2582581304 Rhizobium sp. YR519 Isolate Rhizosphere
12 2585427594 Rhizobium sp. YR528 Isolate Rhizosphere
13 2619619299 Pseudomonas veronii R4 Genome sequencing Isolate Unclassified
14 2643221599 Rhizobium sp. Root708 Isolate Unclassified
15 2643221637 Rhizobium sp. Root1212 Isolate Unclassified
16 2643221643 Rhizobium sp. Root1220 Isolate Unclassified
17 2643221683 Variovorax sp. Root473 Isolate Unclassified
18 2643221688 Rhizobium sp. Root482 Isolate Unclassified
19 2643221718 Rhizobium sp. Root268 Isolate Unclassified
20 2671180115 Cedecea sp. NFIX57 Isolate Rhizoplane
21 2718217927 Rhizobium sp. N324 Isolate Nodule
22 2718218423 Rhizobium sp. N941 Isolate Nodule
23 2721755523 Delftia sp. HK171 Isolate Unclassified
24 2721755809 Rhizobium sp. N541 Isolate Nodule
25 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
26 2738541265 Pseudomonas sp. GV077 Isolate Unclassified
27 2738541282 Pseudomonas sp. GV058 Isolate Unclassified
28 2738541293 Rhizobium sp. GV031 Isolate Unclassified
29 2738541303 Pseudomonas sp. GV105 Isolate Unclassified
30 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
31 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
32 2773857925 Microvirga vignae BR3299 Isolate Unclassified
33 2791355256 Rhizobium sp. M10 Isolate Nodule
34 2791355262 Rhizobium sp. M1 Isolate Nodule
35 2791355263 Rhizobium chutanense C5 Isolate Nodule
36 2808606366 Arthrobacter sp. SLBN-83 Isolate Unclassified
37 2808606371 Arthrobacter sp. SLBN-53 Isolate Unclassified
38 2816332298 Pseudomonas veronii R02 Isolate Rhizosphere
39 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
40 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
41 2838668709 Rhizobium sophoriradicis SEMIA 403 Isolate Nodule
42 2838701080 Rhizobium aethiopicum SEMIA 428 Isolate Nodule
43 2838729681 Rhizobium leguminosarum SEMIA 445 Isolate Nodule
44 2838742623 Rhizobium leguminosarum SEMIA 449 Isolate Nodule
45 2839138175 Delftia acidovorans B15 Isolate Rhizosphere
46 2841851746 Rhizobium leguminosarum SEMIA 498 Isolate Nodule
47 2842146304 Rhizobium sophoriradicis SEMIA 454 Isolate Nodule
48 2842229732 Rhizobium leguminosarum SEMIA 481 Isolate Nodule
49 2842243621 Rhizobium leguminosarum SEMIA 483 Isolate Nodule
50 2842250916 Rhizobium etli SEMIA 484 Isolate Nodule
51 2842257432 Rhizobium leguminosarum SEMIA 485 Isolate Nodule
52 2842395702 Rhizobium ecuadorense SEMIA 4029 Isolate Nodule
53 2844454524 Rhizobium leguminosarum bv. viciae BIHB 1217 Isolate Nodule
54 2846540461 Photorhabdus luminescens HIM3 Isolate Rhizosphere
55 2848992105 Sinorhizobium fredii CCBAU 25509 Isolate Unclassified
56 2855020534 Paracoccus endophyticus SYSUP0003 Isolate Stem Tuber
57 2855872281 Sinorhizobium fredii PCH1 Isolate Nodule
58 2856287931 Paraburkholderia bannensis BE22 Isolate Rhizosphere
59 2885270888 Paraburkholderia sp. UYCPa14C Isolate Unclassified
60 2891670763 Buttiauxella sp. B2 Isolate Rhizosphere
61 2900634093 Paraburkholderia dipogonis ICMP 19430 Isolate Unclassified
62 2904479285 Comamonas sediminis 4487 Isolate Rhizosphere
63 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
64 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
65 2917832318 Pseudomonas rhizoryzae RY24 Isolate Unclassified
66 2919125081 Pseudomonas psychrotolerans 1545 Isolate Rhizosphere
67 2921257292 Sinorhizobium meliloti USDA1320 Isolate Nodule
68 2923556063 Rhizobium tibeticum 3740 Isolate Unclassified
69 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
70 2928084124 Variovorax paradoxus 1218 Isolate Unclassified
71 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
72 2936381700 Rhizobium chutanense C16 Isolate Unclassified
73 2937023124 Sinorhizobium meliloti USDA1335 Isolate Nodule
74 2937063883 Sinorhizobium meliloti USDA1808 Isolate Nodule
75 2941479691
76 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere
77 2957382221 Sinorhizobium meliloti USDA1919 Isolate Nodule
78 2957395598 Sinorhizobium meliloti USDA1237 Isolate Nodule
79 2957402308 Sinorhizobium meliloti USDA1794 Isolate Nodule
80 2960637947 Sinorhizobium meliloti USDA1202 Isolate Nodule
81 2964615318 Sinorhizobium meliloti USDA1248 Isolate Nodule
82 2964628898 Sinorhizobium meliloti USDA1191 Isolate Nodule
83 2964719344 Sinorhizobium meliloti USDA1456 Isolate Nodule
84 2967755722 Sinorhizobium meliloti USDA1302 Isolate Nodule
85 2970033650 Sinorhizobium meliloti USDA1565 Isolate Nodule
86 2970068827 Sinorhizobium meliloti USDA1227 Isolate Nodule
87 2970102677 Sinorhizobium meliloti USDA1325 Isolate Nodule
88 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
89 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
90 2984504281 Pseudomonas psychrotolerans SORGH_AS201 Isolate Aerial Root
91 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
92 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
93 3005452660 Rhizobium grahamii BG7 Isolate Unclassified
94 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
95 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
96 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
97 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
98 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
99 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
100 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
101 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
102 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
103 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
104 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
105 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
106 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
107 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
108 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
109 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
110 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
111 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
112 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
113 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
114 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
115 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
116 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
117 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
118 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
119 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
120 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
121 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
122 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
123 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
124 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
125 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
126 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
127 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
128 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
129 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
130 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
131 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
132 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
133 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
134 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
135 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
136 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
137 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
138 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
139 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
140 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
141 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
142 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
143 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
144 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
145 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
146 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
147 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
148 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
149 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
150 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
151 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
152 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
153 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
154 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
155 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
156 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
157 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
158 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
159 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
160 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
161 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
162 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
163 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
164 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
165 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
166 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
167 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
168 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
169 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
170 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
171 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
172 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
173 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
174 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
175 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
176 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
177 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
178 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
179 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
180 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
181 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
182 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
183 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
184 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
185 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
186 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
187 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
188 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
189 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
190 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
191 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
192 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere
193 643692032 Sinorhizobium fredii NGR234 Isolate Nodule
194 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
195 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere
196 8005275841 Rhizobium sp. N4311 Isolate Nodule
197 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified
198 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
199 8020938398 Burkholderia sp. BE12 Isolate Rhizosphere
200 8021120328 Burkholderia sp. LS-044 Isolate Rhizosphere
201 8046767195 Rhizobium calliandrae CCGE524 Isolate Unclassified
202 8054558443 Rhizobium alarense TRM95111 Isolate Nodule
203 8054844752 Dryocola boscaweniae H18W14 Isolate Rhizosphere
204 8055431914 Allorhizobium sonneratiae BGMRC 0089 Isolate Unclassified
205 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 60.58
Metatranscriptomes 0
Isolates 39.42

Biome Distribution

Category Percentage (%)
Aerial Root 0.73
Bulb 0
Endosphere 17.88
Nodule 18.98
Rhizoplane 0.73
Rhizosphere 31.75
Stem 0
Stem Tuber 0.36
Unclassified 29.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25150J39212_1000028 3300002774 Bacteria 105831
2 JGI25151J46595_10000123 3300003187 Bacteria 105339
3 JGI25151J46595_10014797 3300003187 Bacteria 3463
4 rootH1_10184110 3300003323 Bacteria 1934
5 Ga0055532_1000122 3300003758 Bacteria 79139
6 Ga0055527_1000078 3300003760 Bacteria 79672
7 Ga0055535_1000054 3300003761 Bacteria 131373
8 Ga0055526_1003025 3300003771 Bacteria 10956
9 Ga0055526_1011800 3300003771 Bacteria 3883
10 Ga0055536_1001522 3300003781 Bacteria 13907
11 Ga0055536_1003520 3300003781 Bacteria 8386
12 Ga0055528_1000191 3300003790 Bacteria 52111
13 Ga0055530_10007980 3300003791 Bacteria 4327
14 Ga0055540_1001603 3300003792 Bacteria 13189
15 Ga0055540_1002446 3300003792 Bacteria 9794
16 Ga0055531_10001546 3300003794 Bacteria 16850
17 Ga0065165_1000076 3300005262 Bacteria 163890
18 Ga0070670_100002190 3300005331 Bacteria 16052
19 Ga0068853_100101733 3300005539 Bacteria 2542
20 Ga0070665_100007856 3300005548 Bacteria 10818
21 Ga0070665_100091088 3300005548 Bacteria 3055
22 Ga0070664_100214899 3300005564 Bacteria 1719
23 Ga0068857_100033686 3300005577 Bacteria 4531
24 Ga0068857_100130373 3300005577 Bacteria 2267
25 Ga0075364_10049696 3300006051 Bacteria 2736
26 Ga0075432_10000153 3300006058 Bacteria 16576
27 Ga0075432_10005366 3300006058 Bacteria 4370
28 Ga0075366_10016746 3300006195 Bacteria 4215
29 Ga0079104_1000016 3300006946 Bacteria 313865
30 Ga0079104_1000165 3300006946 Bacteria 94074
31 Ga0079104_1000874 3300006946 Bacteria 24733
32 Ga0105250_10001707 3300009092 Bacteria 11611
33 Ga0105250_10009500 3300009092 Bacteria 4093
34 Ga0105243_10002075 3300009148 Bacteria 16989
35 Ga0105243_10002952 3300009148 Bacteria 14064
36 Ga0105243_10004882 3300009148 Bacteria 10523
37 Ga0105246_10027924 3300011119 Bacteria 3703
38 Ga0157371_10000800 3300013102 Bacteria 36092
39 Ga0157370_10011155 3300013104 Bacteria 9418
40 Ga0182008_10012848 3300014497 Bacteria 4412
41 Ga0182005_1000626 3300015265 Bacteria 17007
42 Ga0213872_10000003 3300021361 Bacteria 366948
43 Ga0228710_1011527 3300022740 Bacteria 11372
44 Ga0209672_100036 3300025228 Bacteria 287801
45 Ga0209147_100066 3300025229 Bacteria 232474
46 Ga0209258_100085 3300025242 Bacteria 244731
47 Ga0207425_1000077 3300025245 Bacteria 105391
48 Ga0209148_1000198 3300025254 Bacteria 109136
49 Ga0209129_1000036 3300025258 Bacteria 328331
50 Ga0209455_1000289 3300025272 Bacteria 53897
51 Ga0209673_1000020 3300025273 Bacteria 430653
52 Ga0209673_1008802 3300025273 Bacteria 4450
53 Ga0209675_1004266 3300025291 Bacteria 6435
54 Ga0209676_1000209 3300025292 Bacteria 130388
55 Ga0209676_1000961 3300025292 Bacteria 34895
56 Ga0209025_1000145 3300025294 Bacteria 181436
57 Ga0209025_1000329 3300025294 Bacteria 105391
58 Ga0209025_1000822 3300025294 Bacteria 49588
59 Ga0209564_1000114 3300025295 Bacteria 209934
60 Ga0209564_1000730 3300025295 Bacteria 46914
61 Ga0209758_1000259 3300025297 Bacteria 105391
62 Ga0209050_1000884 3300025298 Bacteria 40094
63 Ga0209050_1009776 3300025298 Bacteria 4841
64 Ga0209256_1000123 3300025299 Bacteria 165547
65 Ga0209256_1002416 3300025299 Bacteria 15315
66 Ga0209051_1000156 3300025303 Bacteria 128246
67 Ga0209051_1000830 3300025303 Bacteria 31912
68 Ga0209257_1000172 3300025304 Bacteria 167434
69 Ga0209257_1019615 3300025304 Bacteria 2537
70 Ga0207696_1000520 3300025711 Bacteria 31938
71 Ga0207696_1010187 3300025711 Bacteria 3460
72 Ga0207650_10004248 3300025925 Bacteria 9778
73 Ga0207686_10025721 3300025934 Bacteria 3428
74 Ga0207709_10000433 3300025935 Bacteria 39614
75 Ga0207709_10001930 3300025935 Bacteria 13624
76 Ga0207709_10003559 3300025935 Bacteria 9210
77 Ga0207674_10043968 3300026116 Bacteria 4604
78 Ga0207674_10089866 3300026116 Bacteria 3064
79 Ga0209281_1000017 3300027111 Bacteria 583251
80 Ga0209281_1000095 3300027111 Bacteria 238108
81 Ga0209281_1001202 3300027111 Bacteria 17603
82 Ga0207428_10000900 3300027907 Bacteria 33202
83 Ga0268266_10007499 3300028379 Bacteria 9836
84 Ga0307515_10009209 3300028794 Bacteria 19123
85 Ga0265331_10001540 3300031250 Bacteria 16957
86 Ga0265327_10000012 3300031251 Bacteria 530403
87 Ga0265327_10000183 3300031251 Bacteria 133191
88 Ga0265327_10048957 3300031251 Bacteria 2219
89 Ga0307405_10017518 3300031731 Bacteria 3932
90 Ga0307416_100010993 3300032002 Bacteria 6009
91 Ga0395899_0001474 3300037312 Bacteria 20022
92 Ga0395899_0075230 3300037312 Bacteria 2466
93 Ga0395900_0000302 3300037418 Bacteria 73622
94 Ga0395898_0000518 3300037466 Bacteria 73622
95 Ga0395905_0000285 3300037471 Bacteria 73934
96 Ga0395905_0001110 3300037471 Bacteria 33818
97 Ga0395901_0000210 3300038443 Bacteria 73622
98 Ga0395901_0012435 3300038443 Bacteria 8636
99 Ga0436361_0051608 3300039447 Bacteria 8445
100 Ga0495620_0004950 3300046515 Bacteria 7473
101 Ga0495628_0002571 3300046516 Bacteria 16333
102 Ga0495631_0000382 3300046518 Bacteria 30522
103 Ga0495643_0003076 3300046522 Bacteria 12524
104 Ga0495621_0019915 3300046539 Bacteria 2196
105 Ga0495597_0000925 3300046542 Bacteria 22776
106 Ga0495597_0001209 3300046542 Bacteria 19263
107 Ga0495645_0008259 3300046543 Bacteria 7260
108 Ga0495633_0000657 3300046558 Bacteria 31904
109 Ga0495625_0004344 3300046660 Bacteria 13460
110 Ga0495680_0010114 3300047322 Bacteria 8434
111 Ga0495687_008861 3300047443 Bacteria 5700
112 Ga0496116_0000346 3300048919 Bacteria 73590
113 Ga0496116_0001646 3300048919 Bacteria 24574
114 Ga0496116_0024962 3300048919 Bacteria 4405
115 Ga0496116_0036221 3300048919 Bacteria 3456
116 Ga0496116_0059895 3300048919 Bacteria 2472
117 Ga0496116_0061191 3300048919 Bacteria 2438
118 Ga0496117_0000070 3300048920 Bacteria 245027
119 Ga0496117_0002893 3300048920 Bacteria 20804
120 Ga0496117_0029053 3300048920 Bacteria 4268
121 Ga0496118_0000746 3300048921 Bacteria 52673
122 Ga0496118_0006608 3300048921 Bacteria 12661
123 Ga0496118_0015750 3300048921 Bacteria 6978
124 Ga0496118_0046189 3300048921 Bacteria 3391
125 Ga0496118_0060383 3300048921 Bacteria 2815
126 Ga0496119_0020083 3300048922 Bacteria 4886
127 Ga0496119_0037597 3300048922 Bacteria 3142
128 Ga0496119_0047758 3300048922 Bacteria 2660
129 Ga0496120_0002074 3300048923 Bacteria 21539
130 Ga0496120_0003414 3300048923 Bacteria 14524
131 Ga0496120_0013385 3300048923 Bacteria 5526
132 Ga0496121_0000159 3300048924 Bacteria 147049
133 Ga0496121_0008771 3300048924 Bacteria 11794
134 Ga0496122_0000022 3300048925 Bacteria 388704
135 Ga0496122_0000115 3300048925 Bacteria 183402
136 Ga0496122_0000449 3300048925 Bacteria 85961
137 Ga0496122_0004410 3300048925 Bacteria 17516
138 Ga0496123_0000016 3300048926 Bacteria 424330
139 Ga0496123_0000129 3300048926 Bacteria 153816
140 Ga0496123_0000263 3300048926 Bacteria 105886
141 Ga0496124_0000080 3300048927 Bacteria 210439
142 Ga0496124_0000111 3300048927 Bacteria 166285
143 Ga0496124_0001325 3300048927 Bacteria 37278
144 Ga0496124_0003966 3300048927 Bacteria 17645
145 Ga0496124_0014874 3300048927 Bacteria 7496
146 Ga0496124_0041291 3300048927 Bacteria 3982
147 Ga0496124_0088536 3300048927 Bacteria 2530
148 Ga0496125_0000005 3300048928 Bacteria 827598
149 Ga0496125_0000371 3300048928 Bacteria 84352
150 Ga0496125_0016933 3300048928 Bacteria 6973
151 Ga0496125_0025264 3300048928 Bacteria 5443
152 Ga0496125_0055013 3300048928 Bacteria 3247
153 Ga0496126_0000335 3300048929 Bacteria 99038
154 Ga0496126_0000918 3300048929 Bacteria 50977
155 Ga0496126_0002414 3300048929 Bacteria 25283
156 Ga0496126_0083211 3300048929 Bacteria 2825
157 Ga0501033_0011517 3300049570 Bacteria 6768
158 Ga0501034_0000163 3300049571 Bacteria 125417
159 Ga0501043_0135498 3300049579 Bacteria 1929
160 Ga0501035_0053186 3300049822 Bacteria 3622
161 Ga0501044_0026729 3300049823 Bacteria 6108
162 nmdc:mga00v17_41927_c1 3300050491 Bacteria 2751
163 nmdc:mga0k408_7130_c1 3300050493 Bacteria 5430
164 nmdc:mga06z11_7802_c1 3300050494 Bacteria 4425
165 Ga0500559_0002535 3300053136 Bacteria 9377
166 Ga0500609_001471 3300053731 Bacteria 3442

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300038443 Ga0395901_0012435 Ga0395901_0012435_4652_6235 458
2 iso_pu_bacteria 2839138175 2839143433 460
3 iso_pu_bacteria 2855872281 2855876018 465
4 3300048920 Ga0496117_0000070 Ga0496117_0000070_201248_202996 473
5 3300048922 Ga0496119_0047758 Ga0496119_0047758_315_2030 476
6 3300048923 Ga0496120_0003414 Ga0496120_0003414_12040_13755 476
7 3300048928 Ga0496125_0000371 Ga0496125_0000371_14291_15838 476
8 3300048928 Ga0496125_0016933 Ga0496125_0016933_3615_5363 483
9 3300049570 Ga0501033_0011517 Ga0501033_0011517_3298_4962 485
10 3300049579 Ga0501043_0135498 Ga0501043_0135498_95_1759 485
11 3300049822 Ga0501035_0053186 Ga0501035_0053186_1944_3608 485
12 3300049823 Ga0501044_0026729 Ga0501044_0026729_859_2523 485
13 iso_pu_bacteria 8016254467 8016255190 485
14 iso_pu_bacteria 2904509784 2904510414 487
15 iso_pu_bacteria 2977228692 2977230265 487
16 iso_pu_bacteria 2977236895 2977239067 487
17 iso_pu_bacteria 2984542743 2984543148 487
18 3300025294 Ga0209025_1000822 Ga0209025_100082229 488
19 3300048921 Ga0496118_0015750 Ga0496118_0015750_387_1922 490
20 3300048922 Ga0496119_0020083 Ga0496119_0020083_3019_4554 490
21 3300048923 Ga0496120_0002074 Ga0496120_0002074_13194_14729 490
22 3300048925 Ga0496122_0000022 Ga0496122_0000022_282220_283755 490
23 3300048926 Ga0496123_0000016 Ga0496123_0000016_317703_319238 490
24 3300048927 Ga0496124_0003966 Ga0496124_0003966_10448_11983 490
25 3300048929 Ga0496126_0002414 Ga0496126_0002414_2779_4314 490
26 3300021361 Ga0213872_10000003 Ga0213872_10000003201 495
27 3300039447 Ga0436361_0051608 Ga0436361_0051608_4300_5913 495
28 3300025298 Ga0209050_1009776 Ga0209050_10097763 496
29 3300046542 Ga0495597_0001209 Ga0495597_0001209_2577_4205 496
30 3300048920 Ga0496117_0029053 Ga0496117_0029053_1322_2971 496
31 iso_pu_bacteria 2757320536 2758224855 496
32 3300046516 Ga0495628_0002571 Ga0495628_0002571_8848_10788 497
33 3300046543 Ga0495645_0008259 Ga0495645_0008259_395_2335 497
34 3300048929 Ga0496126_0000918 Ga0496126_0000918_6858_8459 498
35 3300025291 Ga0209675_1004266 Ga0209675_10042662 499
36 3300047322 Ga0495680_0010114 Ga0495680_0010114_5458_6990 499
37 3300048919 Ga0496116_0024962 Ga0496116_0024962_1920_3557 499
38 3300011119 Ga0105246_10027924 Ga0105246_100279243 500
39 3300005548 Ga0070665_100007856 Ga0070665_1000078562 501
40 3300025935 Ga0207709_10003559 Ga0207709_100035596 501
41 3300028379 Ga0268266_10007499 Ga0268266_100074993 501
42 iso_pu_bacteria 2619619299 2621300001 501
43 iso_pu_bacteria 2738541265 2738670001 501
44 iso_pu_bacteria 2738541282 2738748394 501
45 iso_pu_bacteria 2738541303 2738857436 501
46 iso_pu_bacteria 2816332298 2817491297 501
47 3300005262 Ga0065165_1000076 Ga0065165_100007692 502
48 iso_pu_bacteria 2904541872 2904546446 502
49 iso_pu_bacteria 2917832318 2917836441 502
50 iso_pu_bacteria 2919125081 2919126537 502
51 iso_pu_bacteria 2929160207 2929165893 502
52 iso_pu_bacteria 2984504281 2984506888 502
53 3300031251 Ga0265327_10048957 Ga0265327_100489572 503
54 3300049571 Ga0501034_0000163 Ga0501034_0000163_121408_123009 503
55 iso_pu_bacteria 2855020534 2855023481 503
56 iso_pu_bacteria 2513237165 2514041942 504
57 iso_pu_bacteria 2721755523 2722881725 504
58 3300005564 Ga0070664_100214899 Ga0070664_1002148991 505
59 3300005577 Ga0068857_100130373 Ga0068857_1001303732 505
60 3300026116 Ga0207674_10089866 Ga0207674_100898662 505
61 3300031250 Ga0265331_10001540 Ga0265331_1000154016 505
62 3300031251 Ga0265327_10000012 Ga0265327_10000012250 505
63 3300031251 Ga0265327_10000183 Ga0265327_1000018387 505
64 3300048925 Ga0496122_0000449 Ga0496122_0000449_66264_67853 505
65 3300048926 Ga0496123_0000263 Ga0496123_0000263_37979_39568 505
66 3300048927 Ga0496124_0014874 Ga0496124_0014874_2714_4303 505
67 3300048927 Ga0496124_0041291 Ga0496124_0041291_463_2055 505
68 iso_pu_bacteria 2513020051 2513227554 505
69 iso_pu_bacteria 2643221683 2644466497 505
70 iso_pu_bacteria 2728369276 2729906444 505
71 iso_pu_bacteria 2928084124 2928085690 505
72 3300003187 JGI25151J46595_10014797 JGI25151J46595_100147972 506
73 3300006195 Ga0075366_10016746 Ga0075366_100167463 506
74 3300009148 Ga0105243_10002075 Ga0105243_100020756 506
75 3300013102 Ga0157371_10000800 Ga0157371_1000080024 506
76 3300025294 Ga0209025_1000145 Ga0209025_100014530 506
77 3300028794 Ga0307515_10009209 Ga0307515_1000920921 506
78 3300050493 nmdc:mga0k408_7130_c1 nmdc:mga0k408_7130_c1_3229_4812 506
79 3300053136 Ga0500559_0002535 Ga0500559_0002535_7080_8672 506
80 iso_pu_bacteria 8055431914 8055434913 506
81 3300003781 Ga0055536_1003520 Ga0055536_10035202 507
82 3300003791 Ga0055530_10007980 Ga0055530_100079802 507
83 3300003792 Ga0055540_1002446 Ga0055540_10024462 507
84 3300003794 Ga0055531_10001546 Ga0055531_1000154614 507
85 3300025292 Ga0209676_1000961 Ga0209676_100096118 507
86 3300025298 Ga0209050_1000884 Ga0209050_100088417 507
87 3300025303 Ga0209051_1000830 Ga0209051_100083013 507
88 3300025304 Ga0209257_1000172 Ga0209257_100017219 507
89 3300046558 Ga0495633_0000657 Ga0495633_0000657_20112_21722 507
90 3300048928 Ga0496125_0055013 Ga0496125_0055013_365_1975 507
91 iso_pu_bacteria 2904479285 2904481883 507
92 iso_pu_bacteria 2941479691 2941481550 507
93 iso_pu_bacteria 2945984333 2945990115 507
94 iso_pu_bacteria 8054558443 8054561516 507
95 3300005539 Ga0068853_100101733 Ga0068853_1001017332 508
96 3300005548 Ga0070665_100091088 Ga0070665_1000910882 508
97 3300005577 Ga0068857_100033686 Ga0068857_1000336865 508
98 3300006946 Ga0079104_1000016 Ga0079104_1000016226 508
99 3300009092 Ga0105250_10009500 Ga0105250_100095001 508
100 3300009148 Ga0105243_10004882 Ga0105243_100048829 508
101 3300025711 Ga0207696_1010187 Ga0207696_10101873 508
102 3300025935 Ga0207709_10001930 Ga0207709_100019302 508
103 3300026116 Ga0207674_10043968 Ga0207674_100439682 508
104 3300027111 Ga0209281_1000017 Ga0209281_1000017236 508
105 3300046518 Ga0495631_0000382 Ga0495631_0000382_20155_21756 508
106 3300046539 Ga0495621_0019915 Ga0495621_0019915_369_1967 508
107 3300048921 Ga0496118_0060383 Ga0496118_0060383_184_1782 508
108 iso_pu_bacteria 2818991461 2819683201 508
109 iso_pu_bacteria 8003400568 8003404233 508
110 3300003323 rootH1_10184110 rootH1_101841101 509
111 3300003781 Ga0055536_1001522 Ga0055536_10015225 509
112 3300003792 Ga0055540_1001603 Ga0055540_10016038 509
113 3300005331 Ga0070670_100002190 Ga0070670_1000021908 509
114 3300009148 Ga0105243_10002952 Ga0105243_100029528 509
115 3300025292 Ga0209676_1000209 Ga0209676_100020939 509
116 3300025303 Ga0209051_1000156 Ga0209051_100015674 509
117 3300025304 Ga0209257_1019615 Ga0209257_10196152 509
118 3300025925 Ga0207650_10004248 Ga0207650_100042487 509
119 3300025935 Ga0207709_10000433 Ga0207709_100004339 509
120 3300048927 Ga0496124_0001325 Ga0496124_0001325_10065_11654 509
121 3300048929 Ga0496126_0000335 Ga0496126_0000335_14714_16303 509
122 iso_pu_bacteria 2834641062 2834644365 509
123 3300013104 Ga0157370_10011155 Ga0157370_100111557 510
124 3300014497 Ga0182008_10012848 Ga0182008_100128483 510
125 3300032002 Ga0307416_100010993 Ga0307416_1000109935 510
126 3300048919 Ga0496116_0001646 Ga0496116_0001646_20923_22533 510
127 3300048924 Ga0496121_0008771 Ga0496121_0008771_4834_6444 510
128 3300048925 Ga0496122_0000115 Ga0496122_0000115_46421_48031 510
129 3300048926 Ga0496123_0000129 Ga0496123_0000129_10174_11784 510
130 3300048927 Ga0496124_0088536 Ga0496124_0088536_908_2518 510
131 3300048928 Ga0496125_0025264 Ga0496125_0025264_892_2502 510
132 3300048929 Ga0496126_0083211 Ga0496126_0083211_179_1789 510
133 iso_pu_bacteria 2846540461 2846540937 510
134 3300031731 Ga0307405_10017518 Ga0307405_100175184 511
135 3300037312 Ga0395899_0001474 Ga0395899_0001474_16543_18105 511
136 3300037418 Ga0395900_0000302 Ga0395900_0000302_16543_18105 511
137 3300037466 Ga0395898_0000518 Ga0395898_0000518_16543_18105 511
138 3300037471 Ga0395905_0000285 Ga0395905_0000285_16543_18105 511
139 3300038443 Ga0395901_0000210 Ga0395901_0000210_16543_18105 511
140 3300048919 Ga0496116_0061191 Ga0496116_0061191_30_1649 511
141 3300048921 Ga0496118_0046189 Ga0496118_0046189_860_2479 511
142 3300048923 Ga0496120_0013385 Ga0496120_0013385_879_2498 511
143 3300048924 Ga0496121_0000159 Ga0496121_0000159_115188_116807 511
144 3300048928 Ga0496125_0000005 Ga0496125_0000005_684231_685850 511
145 iso_pu_bacteria 8002811521 8002813489 511
146 iso_pu_bacteria 8054844752 8054846710 511
147 iso_pu_bacteria 2558860983 2561467394 512
148 iso_pu_bacteria 2671180115 2671584448 512
149 iso_pu_bacteria 2891670763 2891674451 512
150 iso_pu_bacteria 2808606371 2808897592 513
151 iso_pu_bacteria 2643221643 2644242210 514
152 iso_pu_bacteria 2718217927 2719389254 515
153 iso_pu_bacteria 2718218423 2721402019 515
154 iso_pu_bacteria 2721755809 2724035852 515
155 iso_pu_bacteria 2791355256 2793299971 515
156 iso_pu_bacteria 2791355262 2793338489 515
157 iso_pu_bacteria 2791355263 2793340895 515
158 iso_pu_bacteria 2838668709 2838674844 515
159 iso_pu_bacteria 2838701080 2838707178 515
160 iso_pu_bacteria 2838729681 2838733496 515
161 iso_pu_bacteria 2838742623 2838746166 515
162 iso_pu_bacteria 2841851746 2841858078 515
163 iso_pu_bacteria 2842146304 2842151791 515
164 iso_pu_bacteria 2842229732 2842237055 515
165 iso_pu_bacteria 2842243621 2842247806 515
166 iso_pu_bacteria 2842250916 2842257016 515
167 iso_pu_bacteria 2842257432 2842259401 515
168 iso_pu_bacteria 2842395702 2842402047 515
169 iso_pu_bacteria 2844454524 2844459728 515
170 iso_pu_bacteria 2848992105 2848998631 515
171 iso_pu_bacteria 2936381700 2936384322 515
172 iso_pu_bacteria 8005275841 8005277595 515
173 3300006946 Ga0079104_1000165 Ga0079104_10001659 516
174 3300025711 Ga0207696_1000520 Ga0207696_100052022 516
175 3300027111 Ga0209281_1000095 Ga0209281_100009551 516
176 3300037312 Ga0395899_0075230 Ga0395899_0075230_321_1997 516
177 iso_pu_bacteria 2508501122 2509112163 516
178 iso_pu_bacteria 2758568016 2758638263 516
179 iso_pu_bacteria 2808606366 2808876090 516
180 iso_pu_bacteria 2921257292 2921262220 516
181 iso_pu_bacteria 2923556063 2923560342 516
182 iso_pu_bacteria 2937023124 2937027229 516
183 iso_pu_bacteria 2957382221 2957385540 516
184 iso_pu_bacteria 2957395598 2957398976 516
185 iso_pu_bacteria 2957402308 2957405037 516
186 iso_pu_bacteria 2964615318 2964620581 516
187 iso_pu_bacteria 2967755722 2967759954 516
188 iso_pu_bacteria 2970102677 2970107333 516
189 iso_pu_bacteria 643692032 643823813 516
190 3300025934 Ga0207686_10025721 Ga0207686_100257211 517
191 3300037471 Ga0395905_0001110 Ga0395905_0001110_13202_14788 517
192 3300048927 Ga0496124_0000080 Ga0496124_0000080_125438_127066 517
193 iso_pu_bacteria 2513237088 2513600033 517
194 iso_pu_bacteria 2516143018 2516207639 517
195 iso_pu_bacteria 2558860100 2558860145 517
196 iso_pu_bacteria 2773857925 2774874405 517
197 iso_pu_bacteria 2856287931 2856288314 517
198 iso_pu_bacteria 2900634093 2900642084 517
199 iso_pu_bacteria 2926754445 2926760017 517
200 iso_pu_bacteria 2937063883 2937065088 517
201 iso_pu_bacteria 2960637947 2960643150 517
202 iso_pu_bacteria 2964628898 2964629393 517
203 iso_pu_bacteria 2964719344 2964724879 517
204 iso_pu_bacteria 2970033650 2970036402 517
205 iso_pu_bacteria 2970068827 2970071907 517
206 iso_pu_bacteria 8020938398 8020942100 517
207 iso_pu_bacteria 8021120328 8021127644 517
208 iso_pu_bacteria 8046767195 8046774066 517
209 iso_pu_bacteria 2643221637 2644210727 518
210 iso_pu_bacteria 2643221718 2644654261 518
211 iso_pu_bacteria 8056875544 8056876418 518
212 3300025273 Ga0209673_1008802 Ga0209673_10088023 519
213 iso_pu_bacteria 2524023207 2524453826 519
214 iso_pu_bacteria 3005452660 3005456721 519
215 iso_pu_bacteria 3005452660 3005458548 519
216 3300006946 Ga0079104_1000874 Ga0079104_10008746 520
217 3300009092 Ga0105250_10001707 Ga0105250_100017074 520
218 3300027111 Ga0209281_1001202 Ga0209281_100120210 520
219 3300046515 Ga0495620_0004950 Ga0495620_0004950_2021_3616 520
220 3300046542 Ga0495597_0000925 Ga0495597_0000925_7055_8695 520
221 3300053731 Ga0500609_001471 Ga0500609_001471_1648_3243 520
222 iso_pu_bacteria 2643221688 2644494894 520
223 3300003758 Ga0055532_1000122 Ga0055532_100012270 521
224 3300003760 Ga0055527_1000078 Ga0055527_100007871 521
225 3300003761 Ga0055535_1000054 Ga0055535_100005414 521
226 3300003771 Ga0055526_1003025 Ga0055526_10030255 521
227 3300003771 Ga0055526_1011800 Ga0055526_10118002 521
228 3300003790 Ga0055528_1000191 Ga0055528_100019126 521
229 3300006051 Ga0075364_10049696 Ga0075364_100496962 521
230 3300006058 Ga0075432_10000153 Ga0075432_1000015312 521
231 3300006058 Ga0075432_10005366 Ga0075432_100053662 521
232 3300015265 Ga0182005_1000626 Ga0182005_100062612 521
233 3300022740 Ga0228710_1011527 Ga0228710_10115279 521
234 3300025228 Ga0209672_100036 Ga0209672_10003614 521
235 3300025229 Ga0209147_100066 Ga0209147_10006614 521
236 3300025242 Ga0209258_100085 Ga0209258_10008514 521
237 3300025254 Ga0209148_1000198 Ga0209148_100019814 521
238 3300025272 Ga0209455_1000289 Ga0209455_100028940 521
239 3300025273 Ga0209673_1000020 Ga0209673_1000020291 521
240 3300025295 Ga0209564_1000114 Ga0209564_100011473 521
241 3300025295 Ga0209564_1000730 Ga0209564_100073041 521
242 3300025299 Ga0209256_1000123 Ga0209256_1000123109 521
243 3300025299 Ga0209256_1002416 Ga0209256_10024165 521
244 3300027907 Ga0207428_10000900 Ga0207428_100009007 521
245 3300046522 Ga0495643_0003076 Ga0495643_0003076_6953_8560 521
246 3300046660 Ga0495625_0004344 Ga0495625_0004344_5180_6787 521
247 3300047443 Ga0495687_008861 Ga0495687_008861_878_2485 521
248 3300048919 Ga0496116_0036221 Ga0496116_0036221_127_1725 521
249 3300048921 Ga0496118_0006608 Ga0496118_0006608_6004_7602 521
250 3300050491 nmdc:mga00v17_41927_c1 nmdc:mga00v17_41927_c1_779_2377 521
251 iso_pu_bacteria 2519899620 2520376825 521
252 iso_pu_bacteria 2885270888 2885279906 521
253 iso_pu_bacteria 2534681796 2535517902 525
254 iso_pu_bacteria 2643221599 2644003954 525
255 iso_pu_bacteria 8005542996 8005548770 525
256 iso_pu_bacteria 2582581304 2585258457 527
257 iso_pu_bacteria 2585427594 2585842233 527
258 iso_pu_bacteria 2738541293 2738803167 527
259 iso_pu_bacteria 2989771324 2989775256 527
260 3300048919 Ga0496116_0059895 Ga0496116_0059895_297_1919 529
261 3300048922 Ga0496119_0037597 Ga0496119_0037597_468_2090 529
262 3300002774 JGI25150J39212_1000028 JGI25150J39212_100002857 531
263 3300003187 JGI25151J46595_10000123 JGI25151J46595_1000012340 531
264 3300025245 Ga0207425_1000077 Ga0207425_100007738 531
265 3300025258 Ga0209129_1000036 Ga0209129_1000036279 531
266 3300025294 Ga0209025_1000329 Ga0209025_100032938 531
267 3300025297 Ga0209758_1000259 Ga0209758_100025954 531
268 3300048919 Ga0496116_0000346 Ga0496116_0000346_59615_61246 531
269 3300048920 Ga0496117_0002893 Ga0496117_0002893_6841_8472 531
270 3300048921 Ga0496118_0000746 Ga0496118_0000746_12137_13768 531
271 3300048925 Ga0496122_0004410 Ga0496122_0004410_3757_5388 531
272 3300048927 Ga0496124_0000111 Ga0496124_0000111_13775_15406 531
273 3300050494 nmdc:mga06z11_7802_c1 nmdc:mga06z11_7802_c1_2005_3636 531
274 iso_pu_bacteria 2513237088 2513600774 531

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02626

CT_A_B

Carboxyltransferase domain, subdomain A and B

311

577

0.96

PF02682

CT_C_D

Carboxyltransferase domain, subdomain C and D

1

191

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
3mml-assembly2.cif.gz_E allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-msmeg0436 0.9413 222 513
5dud-assembly2.cif.gz_C crystal structure of e. coli ybgjk 0.933 222 512
5i8i-assembly2.cif.gz_D crystal structure of the k. lactis urea amidolyase 0.921 220 512
5dud-assembly1.cif.gz_A crystal structure of e. coli ybgjk 0.9154 222 512
3mml-assembly2.cif.gz_E allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-msmeg0436 0.9132 222 513
ID Description Score Start End Superfamily
af_Q2G094_189_326_2.40.100.10 Mainly Beta;Beta Barrel;Cyclophilin;Cyclophilin-like 0.9725 400 511 2.40.100.10
af_Q2FXW9_143_281_2.40.100.10 Mainly Beta;Beta Barrel;Cyclophilin;Cyclophilin-like 0.9704 400 512 2.40.100.10
5dudA02 Mainly Beta;Beta Barrel;Cyclophilin;Cyclophilin-like 0.9596 400 512 2.40.100.10
3mmlG02 Mainly Beta;Beta Barrel;Cyclophilin;Cyclophilin-like 0.948 397 513 2.40.100.10
3mmlG02 Mainly Beta;Beta Barrel;Cyclophilin;Cyclophilin-like 0.932 397 513 2.40.100.10
ID Description Score Start End GO Terms
AF-A0A066YTC5-F1-model_v4 Carboxyltransferase domain-containing protein 0.9869 401 510 GO:0005524
GO:0016787
AF-A0A379FJX8-F1-model_v4 Allophanate hydrolase 0.9864 404 515 GO:0005524
GO:0016787
AF-A0A837ALE9-F1-model_v4 deleted 0.9805 423 515
AF-A0A0E4FZV7-F1-model_v4 Carboxyltransferase domain-containing protein 0.9739 400 512 GO:0005524
GO:0016787
AF-W8WZC1-F1-model_v4 Allophanate hydrolase 2 subunit 1 / Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) 0.9726 399 513 GO:0004039
GO:0005524

Feature Viewer

pLDDT pTM Quality
86.68 0.86 High
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Predicted Structure (AlphaFold2)

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