F379342

General Info

Members Datasets Scaffolds Average Seq Length
273 202 546 318

Family's Representative Sequence

Representative Sequence 3300050508|nmdc:mga09592_65148_c1|nmdc:mga09592_65148_c1_1641_2750
Length 369
Sequence MRFNGYAPIRQICYGLAGEVKKARTGGFAAVQRTIASHPEREYRRMKSLLRILVAAGAVLSSVAASEQGNAQNYPSKPITIIVPFGPGSATDTITRVVGQHLGVALKQTVVVENRPGANGALAALFVARSAPDGYTLFMSTNSPHSAVPFLMKNVAYDPIKDFAAVTRMGSYTLVLVIHPSIPAKSVRELIEHAKANPGKLSFASGNTSGVVAGETLKRWAEIDMLHVPYKSAPPAINDVLAGRVSMMFTDLTTGLPHVKAGTLRALAVTRRQRSALIPELPTLDEAGVKGFDMDSWAAIFVPAHTPQDIVTLLNTELRKIIDSADVKSKLGNAGFEAFSSSAKELDAFVKVQLGHWGKMIKDAGIEPE

Samples

Sample ID Description Type Environment
1 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
2 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
9 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
10 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
15 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
16 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
17 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
18 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
19 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
22 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
23 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
24 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
27 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
28 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
29 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
30 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
31 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
32 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
35 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
36 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
37 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
38 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
39 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
40 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
41 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
42 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
43 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
44 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
45 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
46 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
47 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
48 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
49 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
50 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
51 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
52 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
53 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
54 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
55 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
56 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
57 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
58 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
59 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
60 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
61 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
62 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
63 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
64 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
65 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
66 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
67 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
68 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
69 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
70 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
71 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
72 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
73 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
74 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
75 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
76 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
96 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
97 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
98 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
99 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
100 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
101 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
102 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
103 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
104 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
105 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
106 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
107 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
108 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
109 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
110 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
111 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
112 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
113 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
114 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
115 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
116 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
117 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
118 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
119 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
120 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
121 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
122 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
123 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
124 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
125 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
126 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
127 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
128 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
129 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
130 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
131 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
132 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
133 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
134 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
135 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
136 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
137 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
138 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
139 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
140 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
141 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
142 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
143 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
144 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
145 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
146 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
147 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
148 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
149 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
150 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
151 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
152 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
153 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
154 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
155 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
156 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
157 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
158 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
159 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
160 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
161 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
162 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
163 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
164 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
165 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
166 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
167 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
168 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
169 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
170 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
171 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
172 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
173 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
174 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
175 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
176 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
177 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
178 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
179 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
180 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
181 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
182 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
183 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
184 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
185 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
186 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
187 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
188 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
189 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
190 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
191 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
192 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
193 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
194 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
195 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
196 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
197 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
198 2855730933 Achromobacter sp. HZ28 Isolate Nodule
199 2855767633 Achromobacter sp. HZ34 Isolate Nodule
200 2881412998 Achromobacter aloeverae AVA-1 Isolate Unclassified
201 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere
202 8055225921 Achromobacter panacis KCTC 42751 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.8
Metatranscriptomes 0
Isolates 2.2

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.89
Nodule 0.73
Rhizoplane 3.66
Rhizosphere 78.75
Stem 0
Stem Tuber 0
Unclassified 2.2

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga09592_65148_c1 3300050508 Bacteria 3086
2 Ga0070677_10138705 3300005333 Bacteria 1119
3 Ga0068869_100004829 3300005334 Bacteria 8416
4 Ga0070680_100002523 3300005336 Bacteria 13558
5 Ga0070682_100080861 3300005337 Bacteria 2102
6 Ga0068868_100005044 3300005338 Bacteria 9273
7 Ga0070689_100030457 3300005340 Bacteria 4096
8 Ga0070691_10001214 3300005341 Bacteria 10830
9 Ga0070687_100002909 3300005343 Bacteria 6562
10 Ga0070692_10004072 3300005345 Bacteria 6044
11 Ga0070668_100040634 3300005347 Bacteria 3559
12 Ga0070675_100016819 3300005354 Bacteria 5806
13 Ga0070674_100026583 3300005356 Bacteria 3783
14 Ga0070714_100243792 3300005435 Bacteria 1659
15 Ga0070713_100385271 3300005436 Bacteria 1307
16 Ga0070701_10000841 3300005438 Bacteria 10992
17 Ga0070705_100000270 3300005440 Bacteria 31405
18 Ga0070700_100009582 3300005441 Bacteria 5321
19 Ga0070694_100004858 3300005444 Bacteria 8092
20 Ga0070694_100114094 3300005444 Bacteria 1929
21 Ga0070681_10252514 3300005458 Bacteria 1676
22 Ga0068867_100002959 3300005459 Bacteria 11964
23 Ga0070685_10194911 3300005466 Bacteria 1313
24 Ga0070707_100511428 3300005468 Bacteria 1163
25 Ga0070699_100007355 3300005518 Bacteria 9588
26 Ga0070679_100011197 3300005530 Bacteria 8548
27 Ga0070684_100046494 3300005535 Bacteria 3761
28 Ga0068853_100184168 3300005539 Bacteria 1895
29 Ga0068853_100370740 3300005539 Bacteria 1335
30 Ga0070686_100000516 3300005544 Bacteria 23132
31 Ga0070686_100007161 3300005544 Bacteria 6215
32 Ga0070695_100000162 3300005545 Bacteria 31870
33 Ga0070695_100032871 3300005545 Bacteria 3244
34 Ga0070696_100001976 3300005546 Bacteria 13463
35 Ga0070693_100000071 3300005547 Bacteria 42071
36 Ga0070693_100163072 3300005547 Bacteria 1421
37 Ga0070704_100000635 3300005549 Bacteria 16959
38 Ga0068855_100004363 3300005563 Bacteria 17292
39 Ga0068859_100016847 3300005617 Bacteria 7337
40 Ga0068866_10055758 3300005718 Bacteria 2031
41 Ga0068861_100010452 3300005719 Bacteria 6442
42 Ga0068858_100001499 3300005842 Bacteria 24066
43 Ga0068862_100004552 3300005844 Bacteria 11687
44 Ga0068862_100014226 3300005844 Bacteria 6598
45 Ga0081455_10000151 3300005937 Bacteria 83439
46 Ga0081455_10027532 3300005937 Bacteria 5209
47 Ga0081455_10035625 3300005937 Bacteria 4444
48 Ga0081538_10051211 3300005981 Bacteria 2482
49 Ga0081538_10138835 3300005981 Bacteria 1125
50 Ga0081538_10140510 3300005981 Bacteria 1115
51 Ga0081539_10001081 3300005985 Bacteria 49568
52 Ga0075365_10221650 3300006038 Bacteria 1327
53 Ga0070715_10183033 3300006163 Bacteria 1052
54 Ga0075362_10014752 3300006177 Bacteria 3162
55 Ga0075367_10006306 3300006178 Bacteria 5980
56 Ga0075367_10047581 3300006178 Bacteria 2524
57 Ga0075369_10019672 3300006186 Bacteria 2758
58 Ga0097621_100002880 3300006237 Bacteria 11805
59 Ga0097621_100014689 3300006237 Bacteria 5868
60 Ga0075370_10004642 3300006353 Bacteria 6699
61 Ga0068871_100009163 3300006358 Bacteria 7155
62 Ga0068871_100009630 3300006358 Bacteria 7015
63 Ga0075428_100127776 3300006844 Bacteria 2765
64 Ga0075428_100578823 3300006844 Bacteria 1200
65 Ga0075430_100247317 3300006846 Bacteria 1478
66 Ga0075431_100035346 3300006847 Bacteria 5144
67 Ga0075431_100124150 3300006847 Bacteria 2664
68 Ga0075431_100193449 3300006847 Bacteria 2083
69 Ga0075433_10045751 3300006852 Bacteria 3806
70 Ga0075434_100030307 3300006871 Bacteria 5326
71 Ga0068865_100020043 3300006881 Bacteria 4335
72 Ga0075436_100000231 3300006914 Bacteria 34915
73 Ga0075436_100034413 3300006914 Bacteria 3494
74 Ga0097620_100016847 3300006931 Bacteria 7337
75 Ga0075435_100001525 3300007076 Bacteria 14901
76 Ga0099794_10007895 3300007265 Bacteria 4398
77 Ga0105240_10109668 3300009093 Unclassified 3342
78 Ga0111539_10003234 3300009094 Bacteria 21537
79 Ga0105245_10003763 3300009098 Bacteria 13508
80 Ga0105245_10020635 3300009098 Bacteria 5777
81 Ga0114129_10056163 3300009147 Bacteria 5516
82 Ga0114129_10133898 3300009147 Unclassified 3402
83 Ga0114129_10146297 3300009147 Bacteria 3237
84 Ga0105243_10000583 3300009148 Bacteria 36624
85 Ga0105243_10004481 3300009148 Bacteria 11041
86 Ga0105241_10089262 3300009174 Bacteria 2428
87 Ga0105242_10002173 3300009176 Bacteria 15464
88 Ga0105237_10026528 3300009545 Bacteria 5921
89 Ga0105249_10007154 3300009553 Bacteria 9741
90 Ga0099796_10002562 3300010159 Bacteria 4022
91 Ga0105239_10337578 3300010375 Bacteria 1700
92 Ga0157378_10002424 3300013297 Bacteria 16583
93 Ga0157375_10096171 3300013308 Bacteria 3034
94 Ga0157379_10133067 3300014968 Bacteria 2239
95 Ga0157376_10002828 3300014969 Bacteria 11868
96 Ga0157376_10151185 3300014969 Bacteria 2094
97 Ga0209025_1004267 3300025294 Bacteria 12569
98 Ga0207645_10160952 3300025907 Bacteria 1468
99 Ga0207663_10256078 3300025916 Bacteria 1290
100 Ga0207662_10000050 3300025918 Bacteria 51610
101 Ga0207652_10008703 3300025921 Bacteria 8168
102 Ga0207687_10004547 3300025927 Bacteria 9232
103 Ga0207686_10001719 3300025934 Bacteria 12192
104 Ga0207709_10003404 3300025935 Bacteria 9498
105 Ga0207670_10008747 3300025936 Bacteria 5734
106 Ga0207670_10017034 3300025936 Bacteria 4384
107 Ga0207669_10015835 3300025937 Bacteria 3814
108 Ga0207704_10002366 3300025938 Bacteria 8480
109 Ga0207704_10007169 3300025938 Bacteria 5246
110 Ga0207665_10021339 3300025939 Bacteria 4258
111 Ga0207689_10022228 3300025942 Bacteria 5333
112 Ga0207667_10375528 3300025949 Bacteria 1449
113 Ga0207712_10016172 3300025961 Bacteria 4824
114 Ga0207708_10000375 3300026075 Bacteria 34939
115 Ga0207708_10009944 3300026075 Bacteria 7062
116 Ga0207648_10000663 3300026089 Bacteria 38545
117 Ga0207648_10017508 3300026089 Bacteria 6516
118 Ga0207648_10080317 3300026089 Bacteria 2845
119 Ga0207675_100000454 3300026118 Bacteria 39739
120 Ga0207675_100005864 3300026118 Bacteria 11731
121 Ga0268265_10001189 3300028380 Bacteria 22690
122 Ga0268265_10005556 3300028380 Bacteria 8607
123 Ga0268264_10002504 3300028381 Bacteria 16153
124 Ga0307515_10000208 3300028794 Bacteria 144484
125 Ga0307511_10001610 3300030521 Bacteria 23948
126 Ga0307511_10148469 3300030521 Bacteria 1353
127 Ga0265332_10010404 3300031238 Bacteria 4140
128 Ga0265325_10000181 3300031241 Bacteria 44985
129 Ga0265340_10007745 3300031247 Bacteria 5824
130 Ga0265339_10005880 3300031249 Bacteria 8128
131 Ga0265339_10037341 3300031249 Bacteria 2715
132 Ga0265331_10022496 3300031250 Bacteria 3216
133 Ga0265327_10038439 3300031251 Bacteria 2611
134 Ga0265316_10227335 3300031344 Unclassified 1375
135 Ga0265316_10325652 3300031344 Unclassified 1116
136 Ga0307509_10084833 3300031507 Bacteria 3261
137 Ga0265313_10000358 3300031595 Bacteria 49794
138 Ga0307508_10000051 3300031616 Bacteria 134500
139 Ga0265342_10000096 3300031712 Bacteria 97237
140 Ga0307416_100352969 3300032002 Bacteria 1489
141 Ga0307507_10032381 3300033179 Bacteria 5459
142 Ga0307507_10061277 3300033179 Bacteria 3504
143 Ga0373952_0014073 3300035092 Bacteria 1596
144 Ga0373952_0016412 3300035092 Bacteria 1506
145 Ga0373936_0047592 3300035113 Bacteria 1730
146 Ga0373954_0000011 3300035118 Bacteria 74083
147 Ga0373960_0036604 3300035121 Bacteria 1399
148 Ga0373943_0010915 3300035170 Bacteria 4080
149 Ga0373943_0019783 3300035170 Bacteria 3099
150 Ga0373942_0089474 3300035207 Bacteria 926
151 Ga0373961_0018115 3300035241 Bacteria 1836
152 Ga0373924_0018477 3300035410 Bacteria 2687
153 Ga0373931_0013775 3300035691 Bacteria 3942
154 Ga0373931_0019312 3300035691 Bacteria 3401
155 Ga0373931_0069328 3300035691 Bacteria 1921
156 Ga0373931_0096165 3300035691 Bacteria 1658
157 Ga0373935_0016851 3300035692 Bacteria 4424
158 Ga0373935_0030278 3300035692 Bacteria 3353
159 Ga0373935_0142790 3300035692 Bacteria 1618
160 Ga0373927_0014720 3300035695 Bacteria 5172
161 Ga0373927_0046331 3300035695 Bacteria 2813
162 Ga0373927_0079661 3300035695 Bacteria 2122
163 Ga0373947_0001330 3300035725 Bacteria 15202
164 Ga0373947_0015990 3300035725 Bacteria 4311
165 Ga0373937_0000870 3300036401 Bacteria 25917
166 Ga0373925_0002633 3300037068 Bacteria 14247
167 Ga0373925_0024685 3300037068 Bacteria 4389
168 Ga0395905_0060079 3300037471 Bacteria 3554
169 Ga0395905_0195111 3300037471 Bacteria 1898
170 Ga0436365_0843907 3300039437 Bacteria 4447
171 Ga0451577_0162562 3300042876 Bacteria 2011
172 Ga0451576_0025759 3300045051 Bacteria 6335
173 Ga0495592_0072534 3300046454 Bacteria 2505
174 Ga0495662_0016733 3300046476 Bacteria 3552
175 Ga0495608_0006185 3300046511 Bacteria 8500
176 Ga0495628_0046499 3300046516 Bacteria 3446
177 Ga0495628_0102551 3300046516 Bacteria 2207
178 Ga0495630_0007869 3300046517 Bacteria 7640
179 Ga0495630_0039629 3300046517 Bacteria 3522
180 Ga0495666_0008030 3300046526 Bacteria 5288
181 Ga0495640_0015905 3300046533 Bacteria 5643
182 Ga0495586_0019466 3300046535 Bacteria 3614
183 Ga0495586_0097945 3300046535 Bacteria 1625
184 Ga0495667_0057415 3300046559 Bacteria 2558
185 Ga0495667_0250487 3300046559 Bacteria 1127
186 Ga0495634_0047641 3300046642 Bacteria 2887
187 Ga0495599_0058980 3300046678 Bacteria 2401
188 Ga0495647_0035171 3300046681 Bacteria 1880
189 Ga0495658_0003894 3300046683 Bacteria 7390
190 Ga0495613_0018440 3300046689 Bacteria 5203
191 Ga0495624_0048253 3300046690 Bacteria 2703
192 Ga0495600_0019279 3300046809 Bacteria 4355
193 Ga0495604_0036089 3300047317 Bacteria 3899
194 Ga0495680_0004876 3300047322 Bacteria 12708
195 Ga0495593_0036229 3300047673 Bacteria 2676
196 Ga0496100_0184384 3300048903 Bacteria 1511
197 Ga0496104_0000493 3300048907 Bacteria 34055
198 Ga0496104_0092698 3300048907 Bacteria 2889
199 Ga0496106_0012544 3300048909 Bacteria 6257
200 Ga0496106_0118166 3300048909 Unclassified 2070
201 Ga0496106_0201917 3300048909 Bacteria 1582
202 Ga0496107_0089269 3300048910 Bacteria 2251
203 Ga0496113_0108756 3300048916 Bacteria 2155
204 Ga0496113_0292353 3300048916 Bacteria 1304
205 Ga0496115_0111960 3300048918 Bacteria 2243
206 Ga0496117_0005421 3300048920 Bacteria 13417
207 Ga0496118_0009103 3300048921 Bacteria 10107
208 Ga0496119_0214252 3300048922 Bacteria 989
209 Ga0496121_0000099 3300048924 Bacteria 200160
210 Ga0496124_0000788 3300048927 Bacteria 51794
211 Ga0496125_0013147 3300048928 Bacteria 8157
212 Ga0496125_0029771 3300048928 Bacteria 4900
213 Ga0496126_0007094 3300048929 Bacteria 12342
214 Ga0496126_0025832 3300048929 Bacteria 5643
215 Ga0501033_0061648 3300049570 Bacteria 2764
216 Ga0501034_0000643 3300049571 Bacteria 54170
217 Ga0501034_0414535 3300049571 Bacteria 1269
218 Ga0501037_0039975 3300049573 Bacteria 3452
219 Ga0501068_0011127 3300049584 Bacteria 5068
220 Ga0501070_0025816 3300049586 Bacteria 4929
221 Ga0501072_0008918 3300049588 Bacteria 7622
222 Ga0501072_0426458 3300049588 Bacteria 1051
223 Ga0501073_0012009 3300049589 Bacteria 6324
224 Ga0501076_0454454 3300049592 Bacteria 1055
225 Ga0501080_0021168 3300049742 Bacteria 6018
226 Ga0501083_0041986 3300049744 Bacteria 3101
227 Ga0501035_0043617 3300049822 Bacteria 4041
228 Ga0501044_0128508 3300049823 Bacteria 2530
229 nmdc:mga00v17_16084_c1 3300050491 Bacteria 4213
230 nmdc:mga0yw44_14608_c1 3300050492 Bacteria 4176
231 nmdc:mga0yw44_2603_c1 3300050492 Bacteria 7753
232 nmdc:mga0k408_149509_c1 3300050493 Bacteria 1391
233 nmdc:mga0k408_74131_c1 3300050493 Bacteria 1988
234 nmdc:mga06z11_28053_c1 3300050494 Bacteria 2698
235 nmdc:mga06z11_33160_c1 3300050494 Bacteria 2524
236 nmdc:mga06z11_43533_c1 3300050494 Bacteria 2260
237 nmdc:mga04h51_57147_c1 3300050495 Bacteria 1327
238 nmdc:mga07m45_40725_c1 3300050496 Bacteria 2600
239 nmdc:mga05p37_16363_c1 3300050507 Bacteria 8933
240 nmdc:mga05p37_801582_c1 3300050507 Bacteria 1030
241 nmdc:mga0qj67_146936_c1 3300050509 Bacteria 1912
242 nmdc:mga06r32_272192_c1 3300050510 Bacteria 1681
243 nmdc:mga08y16_113406_c1 3300050511 Bacteria 2822
244 nmdc:mga08y16_421695_c1 3300050511 Bacteria 1364
245 nmdc:mga08y16_90196_c1 3300050511 Bacteria 3195
246 nmdc:mga0n895_25007_c1 3300050512 Bacteria 5637
247 nmdc:mga0rr50_342464_c1 3300050513 Bacteria 1256
248 nmdc:mga0rr50_585_c1 3300050513 Bacteria 19523
249 nmdc:mga08x19_1017_c1 3300050514 Bacteria 17528
250 nmdc:mga08x19_55812_c1 3300050514 Bacteria 2547
251 nmdc:mga0a205_1459_c1 3300050515 Bacteria 20172
252 nmdc:mga0a205_402206_c1 3300050515 Unclassified 1233
253 nmdc:mga0sz30_1662_c2 3300050516 Bacteria 5173
254 nmdc:mga0sz30_27462_c1 3300050516 Bacteria 2338
255 nmdc:mga0sz30_3765_c1 3300050516 Bacteria 5463
256 Ga0495601_0055905 3300053077 Bacteria 2499
257 Ga0495601_0064222 3300053077 Bacteria 2334
258 Ga0495595_0123233 3300053084 Bacteria 1263
259 Ga0495619_0180883 3300053085 Bacteria 1459
260 Ga0500646_0000624 3300053090 Bacteria 10144
261 Ga0500646_0010147 3300053090 Bacteria 2415
262 Ga0500566_0122343 3300053094 Bacteria 1401
263 Ga0500595_019528 3300053119 Bacteria 2457
264 Ga0500573_0041291 3300053140 Bacteria 2662
265 Ga0500604_0000847 3300053151 Bacteria 8454
266 Ga0500596_000225 3300053735 Bacteria 9606
267 Ga0501084_0139096 3300054114 Bacteria 2044
268 2834643656 2834641062 Bacteria 5559922
269 2855733622 2855730933 Bacteria 7047938
270 2855772161 2855767633 Bacteria 7049357
271 2881417730 2881412998 Bacteria 6492157
272 8003405042 8003400568 Bacteria 5535898
273 8055228654 8055225921 Bacteria 3341787
274 nmdc:mga09592_65148_c1
275 Ga0070677_10138705
276 Ga0068869_100004829
277 Ga0070680_100002523
278 Ga0070682_100080861
279 Ga0068868_100005044
280 Ga0070689_100030457
281 Ga0070691_10001214
282 Ga0070687_100002909
283 Ga0070692_10004072
284 Ga0070668_100040634
285 Ga0070675_100016819
286 Ga0070674_100026583
287 Ga0070714_100243792
288 Ga0070713_100385271
289 Ga0070701_10000841
290 Ga0070705_100000270
291 Ga0070700_100009582
292 Ga0070694_100004858
293 Ga0070694_100114094
294 Ga0070681_10252514
295 Ga0068867_100002959
296 Ga0070685_10194911
297 Ga0070707_100511428
298 Ga0070699_100007355
299 Ga0070679_100011197
300 Ga0070684_100046494
301 Ga0068853_100184168
302 Ga0068853_100370740
303 Ga0070686_100000516
304 Ga0070686_100007161
305 Ga0070695_100000162
306 Ga0070695_100032871
307 Ga0070696_100001976
308 Ga0070693_100000071
309 Ga0070693_100163072
310 Ga0070704_100000635
311 Ga0068855_100004363
312 Ga0068859_100016847
313 Ga0068866_10055758
314 Ga0068861_100010452
315 Ga0068858_100001499
316 Ga0068862_100004552
317 Ga0068862_100014226
318 Ga0081455_10000151
319 Ga0081455_10027532
320 Ga0081455_10035625
321 Ga0081538_10051211
322 Ga0081538_10138835
323 Ga0081538_10140510
324 Ga0081539_10001081
325 Ga0075365_10221650
326 Ga0070715_10183033
327 Ga0075362_10014752
328 Ga0075367_10006306
329 Ga0075367_10047581
330 Ga0075369_10019672
331 Ga0097621_100002880
332 Ga0097621_100014689
333 Ga0075370_10004642
334 Ga0068871_100009163
335 Ga0068871_100009630
336 Ga0075428_100127776
337 Ga0075428_100578823
338 Ga0075430_100247317
339 Ga0075431_100035346
340 Ga0075431_100124150
341 Ga0075431_100193449
342 Ga0075433_10045751
343 Ga0075434_100030307
344 Ga0068865_100020043
345 Ga0075436_100000231
346 Ga0075436_100034413
347 Ga0097620_100016847
348 Ga0075435_100001525
349 Ga0099794_10007895
350 Ga0105240_10109668
351 Ga0111539_10003234
352 Ga0105245_10003763
353 Ga0105245_10020635
354 Ga0114129_10056163
355 Ga0114129_10133898
356 Ga0114129_10146297
357 Ga0105243_10000583
358 Ga0105243_10004481
359 Ga0105241_10089262
360 Ga0105242_10002173
361 Ga0105237_10026528
362 Ga0105249_10007154
363 Ga0099796_10002562
364 Ga0105239_10337578
365 Ga0157378_10002424
366 Ga0157375_10096171
367 Ga0157379_10133067
368 Ga0157376_10002828
369 Ga0157376_10151185
370 Ga0209025_1004267
371 Ga0207645_10160952
372 Ga0207663_10256078
373 Ga0207662_10000050
374 Ga0207652_10008703
375 Ga0207687_10004547
376 Ga0207686_10001719
377 Ga0207709_10003404
378 Ga0207670_10008747
379 Ga0207670_10017034
380 Ga0207669_10015835
381 Ga0207704_10002366
382 Ga0207704_10007169
383 Ga0207665_10021339
384 Ga0207689_10022228
385 Ga0207667_10375528
386 Ga0207712_10016172
387 Ga0207708_10000375
388 Ga0207708_10009944
389 Ga0207648_10000663
390 Ga0207648_10017508
391 Ga0207648_10080317
392 Ga0207675_100000454
393 Ga0207675_100005864
394 Ga0268265_10001189
395 Ga0268265_10005556
396 Ga0268264_10002504
397 Ga0307515_10000208
398 Ga0307511_10001610
399 Ga0307511_10148469
400 Ga0265332_10010404
401 Ga0265325_10000181
402 Ga0265340_10007745
403 Ga0265339_10005880
404 Ga0265339_10037341
405 Ga0265331_10022496
406 Ga0265327_10038439
407 Ga0265316_10227335
408 Ga0265316_10325652
409 Ga0307509_10084833
410 Ga0265313_10000358
411 Ga0307508_10000051
412 Ga0265342_10000096
413 Ga0307416_100352969
414 Ga0307507_10032381
415 Ga0307507_10061277
416 Ga0373952_0014073
417 Ga0373952_0016412
418 Ga0373936_0047592
419 Ga0373954_0000011
420 Ga0373960_0036604
421 Ga0373943_0010915
422 Ga0373943_0019783
423 Ga0373942_0089474
424 Ga0373961_0018115
425 Ga0373924_0018477
426 Ga0373931_0013775
427 Ga0373931_0019312
428 Ga0373931_0069328
429 Ga0373931_0096165
430 Ga0373935_0016851
431 Ga0373935_0030278
432 Ga0373935_0142790
433 Ga0373927_0014720
434 Ga0373927_0046331
435 Ga0373927_0079661
436 Ga0373947_0001330
437 Ga0373947_0015990
438 Ga0373937_0000870
439 Ga0373925_0002633
440 Ga0373925_0024685
441 Ga0395905_0060079
442 Ga0395905_0195111
443 Ga0436365_0843907
444 Ga0451577_0162562
445 Ga0451576_0025759
446 Ga0495592_0072534
447 Ga0495662_0016733
448 Ga0495608_0006185
449 Ga0495628_0046499
450 Ga0495628_0102551
451 Ga0495630_0007869
452 Ga0495630_0039629
453 Ga0495666_0008030
454 Ga0495640_0015905
455 Ga0495586_0019466
456 Ga0495586_0097945
457 Ga0495667_0057415
458 Ga0495667_0250487
459 Ga0495634_0047641
460 Ga0495599_0058980
461 Ga0495647_0035171
462 Ga0495658_0003894
463 Ga0495613_0018440
464 Ga0495624_0048253
465 Ga0495600_0019279
466 Ga0495604_0036089
467 Ga0495680_0004876
468 Ga0495593_0036229
469 Ga0496100_0184384
470 Ga0496104_0000493
471 Ga0496104_0092698
472 Ga0496106_0012544
473 Ga0496106_0118166
474 Ga0496106_0201917
475 Ga0496107_0089269
476 Ga0496113_0108756
477 Ga0496113_0292353
478 Ga0496115_0111960
479 Ga0496117_0005421
480 Ga0496118_0009103
481 Ga0496119_0214252
482 Ga0496121_0000099
483 Ga0496124_0000788
484 Ga0496125_0013147
485 Ga0496125_0029771
486 Ga0496126_0007094
487 Ga0496126_0025832
488 Ga0501033_0061648
489 Ga0501034_0000643
490 Ga0501034_0414535
491 Ga0501037_0039975
492 Ga0501068_0011127
493 Ga0501070_0025816
494 Ga0501072_0008918
495 Ga0501072_0426458
496 Ga0501073_0012009
497 Ga0501076_0454454
498 Ga0501080_0021168
499 Ga0501083_0041986
500 Ga0501035_0043617
501 Ga0501044_0128508
502 nmdc:mga00v17_16084_c1
503 nmdc:mga0yw44_14608_c1
504 nmdc:mga0yw44_2603_c1
505 nmdc:mga0k408_149509_c1
506 nmdc:mga0k408_74131_c1
507 nmdc:mga06z11_28053_c1
508 nmdc:mga06z11_33160_c1
509 nmdc:mga06z11_43533_c1
510 nmdc:mga04h51_57147_c1
511 nmdc:mga07m45_40725_c1
512 nmdc:mga05p37_16363_c1
513 nmdc:mga05p37_801582_c1
514 nmdc:mga0qj67_146936_c1
515 nmdc:mga06r32_272192_c1
516 nmdc:mga08y16_113406_c1
517 nmdc:mga08y16_421695_c1
518 nmdc:mga08y16_90196_c1
519 nmdc:mga0n895_25007_c1
520 nmdc:mga0rr50_342464_c1
521 nmdc:mga0rr50_585_c1
522 nmdc:mga08x19_1017_c1
523 nmdc:mga08x19_55812_c1
524 nmdc:mga0a205_1459_c1
525 nmdc:mga0a205_402206_c1
526 nmdc:mga0sz30_1662_c2
527 nmdc:mga0sz30_27462_c1
528 nmdc:mga0sz30_3765_c1
529 Ga0495601_0055905
530 Ga0495601_0064222
531 Ga0495595_0123233
532 Ga0495619_0180883
533 Ga0500646_0000624
534 Ga0500646_0010147
535 Ga0500566_0122343
536 Ga0500595_019528
537 Ga0500573_0041291
538 Ga0500604_0000847
539 Ga0500596_000225
540 Ga0501084_0139096
541 2834643656
542 2855733622
543 2855772161
544 2881417730
545 8003405042
546 8055228654

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03401

TctC

Tripartite tricarboxylate transporter family receptor

94

366

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
8hkb-assembly1.cif.gz_A tpa bound-form of periplasmic terephthalate binding protein (tbp) from ideonella sakaiensis mutant k184d 0.9727 26 319
2dvz-assembly1.cif.gz_A structure of a periplasmic transporter 0.969 22 319
5oku-assembly1.cif.gz_A r. palustris rpa4515 with adipate 0.9683 22 317
6hke-assembly1.cif.gz_A matc (rpa3494) from rhodopseudomonas palustris with bound malate 0.9658 22 310
2dvz-assembly1.cif.gz_A structure of a periplasmic transporter 0.9595 22 319
ID Description Score Start End Superfamily
6hkeC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9575 121 244 3.40.190.10
2dvzA01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Bordetella uptake gene, domain 1 0.9554 22 317 3.40.190.150
4x9tA02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9505 121 244 3.40.190.10
6hkeC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9501 121 244 3.40.190.10
4x9tA02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.943 121 244 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A537DML3-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9807 30 317
AF-A0A4Q2LC50-F1-model_v4 deleted 0.9804 33 193
AF-A0A2U1V7V3-F1-model_v4 ABC transporter substrate-binding protein 0.979 16 319
AF-A0A849MZ44-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9787 23 319
AF-A0A317HXN3-F1-model_v4 deleted 0.9784 16 319

Map